Multiple sequence alignment - TraesCS3B01G198000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G198000 chr3B 100.000 3352 0 0 1 3352 225320900 225317549 0.000000e+00 6191.0
1 TraesCS3B01G198000 chr3B 100.000 2596 0 0 3687 6282 225317214 225314619 0.000000e+00 4795.0
2 TraesCS3B01G198000 chr3B 90.698 86 8 0 1314 1399 251185138 251185053 1.430000e-21 115.0
3 TraesCS3B01G198000 chr3B 85.567 97 12 2 6172 6268 671446601 671446695 4.010000e-17 100.0
4 TraesCS3B01G198000 chr3B 83.333 102 13 4 1432 1531 602789043 602788944 2.410000e-14 91.6
5 TraesCS3B01G198000 chr3D 90.451 2461 138 36 3854 6268 156211293 156213702 0.000000e+00 3153.0
6 TraesCS3B01G198000 chr3D 95.939 591 13 5 732 1312 156210462 156211051 0.000000e+00 948.0
7 TraesCS3B01G198000 chr3D 83.954 349 29 18 1 348 156209891 156210213 6.120000e-80 309.0
8 TraesCS3B01G198000 chr3D 96.629 178 6 0 2735 2912 156211120 156211297 4.760000e-76 296.0
9 TraesCS3B01G198000 chr3D 81.875 160 25 4 6110 6268 279906600 279906756 1.420000e-26 132.0
10 TraesCS3B01G198000 chr3A 93.293 1670 66 23 3854 5506 175845224 175846864 0.000000e+00 2422.0
11 TraesCS3B01G198000 chr3A 94.745 609 20 6 716 1312 175844407 175845015 0.000000e+00 937.0
12 TraesCS3B01G198000 chr3A 84.150 347 28 16 3 348 175843871 175844191 1.700000e-80 311.0
13 TraesCS3B01G198000 chr3A 96.855 159 5 0 2741 2899 175845046 175845204 3.730000e-67 267.0
14 TraesCS3B01G198000 chr7D 86.997 1515 132 38 3870 5349 510323910 510325394 0.000000e+00 1646.0
15 TraesCS3B01G198000 chr7D 84.752 564 46 24 751 1290 510323098 510323645 4.310000e-146 529.0
16 TraesCS3B01G198000 chr7D 78.289 456 88 10 4788 5239 602847424 602846976 3.710000e-72 283.0
17 TraesCS3B01G198000 chr7D 85.780 218 30 1 1079 1295 602848692 602848475 4.900000e-56 230.0
18 TraesCS3B01G198000 chr7B 86.998 1469 130 33 3870 5291 538571443 538572897 0.000000e+00 1598.0
19 TraesCS3B01G198000 chr7B 85.817 557 38 20 751 1290 538570655 538571187 2.560000e-153 553.0
20 TraesCS3B01G198000 chr7B 78.202 445 92 4 4796 5239 683467408 683466968 4.800000e-71 279.0
21 TraesCS3B01G198000 chr7B 85.782 211 30 0 1079 1289 683468646 683468436 2.280000e-54 224.0
22 TraesCS3B01G198000 chr7A 86.644 1490 129 39 3861 5306 581035748 581037211 0.000000e+00 1585.0
23 TraesCS3B01G198000 chr7A 84.588 571 40 23 751 1290 581034923 581035476 2.010000e-144 523.0
24 TraesCS3B01G198000 chr7A 94.118 187 9 1 429 615 660550057 660549873 3.710000e-72 283.0
25 TraesCS3B01G198000 chr7A 78.194 454 92 6 4788 5239 694516373 694515925 3.710000e-72 283.0
26 TraesCS3B01G198000 chr7A 85.782 211 30 0 1079 1289 694517626 694517416 2.280000e-54 224.0
27 TraesCS3B01G198000 chr7A 89.091 55 6 0 5655 5709 581037585 581037639 1.130000e-07 69.4
28 TraesCS3B01G198000 chr4D 90.791 771 49 6 1439 2190 487059943 487059176 0.000000e+00 1011.0
29 TraesCS3B01G198000 chr4D 93.651 189 11 1 426 614 29656658 29656471 1.330000e-71 281.0
30 TraesCS3B01G198000 chr4D 92.105 190 11 2 432 620 35722303 35722489 1.340000e-66 265.0
31 TraesCS3B01G198000 chr4B 99.774 442 1 0 2911 3352 575893329 575892888 0.000000e+00 811.0
32 TraesCS3B01G198000 chr4B 98.857 175 2 0 3687 3861 575892719 575892545 4.730000e-81 313.0
33 TraesCS3B01G198000 chr5B 93.870 522 23 4 2176 2690 474769312 474768793 0.000000e+00 778.0
34 TraesCS3B01G198000 chr5B 83.073 384 42 15 1735 2113 655580969 655580604 1.690000e-85 327.0
35 TraesCS3B01G198000 chr5B 89.535 86 9 0 1314 1399 22106482 22106397 6.660000e-20 110.0
36 TraesCS3B01G198000 chr5B 89.535 86 9 0 1314 1399 22114546 22114461 6.660000e-20 110.0
37 TraesCS3B01G198000 chr5B 93.151 73 5 0 1430 1502 477431621 477431693 2.390000e-19 108.0
38 TraesCS3B01G198000 chr5B 84.112 107 13 4 1428 1531 531157010 531156905 4.010000e-17 100.0
39 TraesCS3B01G198000 chr5B 84.848 99 15 0 1434 1532 569106543 569106445 4.010000e-17 100.0
40 TraesCS3B01G198000 chr5B 84.848 99 15 0 1434 1532 569108857 569108759 4.010000e-17 100.0
41 TraesCS3B01G198000 chrUn 93.592 515 31 2 2176 2690 150787765 150788277 0.000000e+00 767.0
42 TraesCS3B01G198000 chrUn 89.535 86 9 0 1314 1399 289138429 289138344 6.660000e-20 110.0
43 TraesCS3B01G198000 chrUn 92.754 69 5 0 1434 1502 199463259 199463327 4.010000e-17 100.0
44 TraesCS3B01G198000 chr6A 92.241 348 15 4 1846 2190 256471306 256471644 3.410000e-132 483.0
45 TraesCS3B01G198000 chr6A 90.000 350 29 3 1435 1779 256470704 256471052 1.240000e-121 448.0
46 TraesCS3B01G198000 chr6A 80.000 90 13 5 6181 6268 30429397 30429483 1.890000e-05 62.1
47 TraesCS3B01G198000 chr4A 80.725 607 76 17 1599 2198 665728978 665728406 9.670000e-118 435.0
48 TraesCS3B01G198000 chr4A 94.086 186 8 1 432 617 100636362 100636544 4.800000e-71 279.0
49 TraesCS3B01G198000 chr4A 87.500 88 9 2 2102 2189 48889516 48889601 4.010000e-17 100.0
50 TraesCS3B01G198000 chr4A 84.375 64 10 0 2745 2808 597945581 597945518 5.260000e-06 63.9
51 TraesCS3B01G198000 chr2D 90.228 307 20 8 2387 2692 548260999 548261296 5.900000e-105 392.0
52 TraesCS3B01G198000 chr2D 91.623 191 12 2 431 621 2445416 2445230 1.740000e-65 261.0
53 TraesCS3B01G198000 chr2D 89.655 203 15 6 429 629 563100707 563100905 2.910000e-63 254.0
54 TraesCS3B01G198000 chr2D 85.321 109 13 3 4077 4184 476688341 476688447 6.660000e-20 110.0
55 TraesCS3B01G198000 chr2B 93.617 188 9 2 428 615 771215321 771215137 1.720000e-70 278.0
56 TraesCS3B01G198000 chr2B 90.217 92 9 0 1308 1399 75608792 75608883 3.080000e-23 121.0
57 TraesCS3B01G198000 chr2B 89.130 92 9 1 1310 1400 20738804 20738895 5.150000e-21 113.0
58 TraesCS3B01G198000 chr2B 76.536 179 31 7 6091 6268 666460509 666460341 3.120000e-13 87.9
59 TraesCS3B01G198000 chr1D 81.972 355 33 14 1839 2190 443427199 443426873 8.020000e-69 272.0
60 TraesCS3B01G198000 chr1A 92.063 189 11 4 429 616 578019486 578019671 4.830000e-66 263.0
61 TraesCS3B01G198000 chr1A 77.992 259 49 7 6014 6268 558193337 558193083 8.430000e-34 156.0
62 TraesCS3B01G198000 chr1A 81.379 145 16 10 1427 1570 569762921 569762787 2.390000e-19 108.0
63 TraesCS3B01G198000 chr6D 90.000 200 15 3 429 627 24267070 24266875 2.910000e-63 254.0
64 TraesCS3B01G198000 chr6D 83.041 171 21 6 1123 1289 438810504 438810338 1.410000e-31 148.0
65 TraesCS3B01G198000 chr1B 86.957 138 17 1 2014 2150 327027238 327027101 3.030000e-33 154.0
66 TraesCS3B01G198000 chr5A 90.909 88 8 0 1314 1401 228887460 228887547 1.110000e-22 119.0
67 TraesCS3B01G198000 chr6B 89.655 87 9 0 1314 1400 46919959 46919873 1.850000e-20 111.0
68 TraesCS3B01G198000 chr2A 90.476 84 7 1 1314 1397 516019972 516020054 6.660000e-20 110.0
69 TraesCS3B01G198000 chr2A 85.417 96 14 0 4077 4172 618972883 618972978 4.010000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G198000 chr3B 225314619 225320900 6281 True 5493.00 6191 100.000000 1 6282 2 chr3B.!!$R3 6281
1 TraesCS3B01G198000 chr3D 156209891 156213702 3811 False 1176.50 3153 91.743250 1 6268 4 chr3D.!!$F2 6267
2 TraesCS3B01G198000 chr3A 175843871 175846864 2993 False 984.25 2422 92.260750 3 5506 4 chr3A.!!$F1 5503
3 TraesCS3B01G198000 chr7D 510323098 510325394 2296 False 1087.50 1646 85.874500 751 5349 2 chr7D.!!$F1 4598
4 TraesCS3B01G198000 chr7D 602846976 602848692 1716 True 256.50 283 82.034500 1079 5239 2 chr7D.!!$R1 4160
5 TraesCS3B01G198000 chr7B 538570655 538572897 2242 False 1075.50 1598 86.407500 751 5291 2 chr7B.!!$F1 4540
6 TraesCS3B01G198000 chr7B 683466968 683468646 1678 True 251.50 279 81.992000 1079 5239 2 chr7B.!!$R1 4160
7 TraesCS3B01G198000 chr7A 581034923 581037639 2716 False 725.80 1585 86.774333 751 5709 3 chr7A.!!$F1 4958
8 TraesCS3B01G198000 chr7A 694515925 694517626 1701 True 253.50 283 81.988000 1079 5239 2 chr7A.!!$R2 4160
9 TraesCS3B01G198000 chr4D 487059176 487059943 767 True 1011.00 1011 90.791000 1439 2190 1 chr4D.!!$R2 751
10 TraesCS3B01G198000 chr4B 575892545 575893329 784 True 562.00 811 99.315500 2911 3861 2 chr4B.!!$R1 950
11 TraesCS3B01G198000 chr5B 474768793 474769312 519 True 778.00 778 93.870000 2176 2690 1 chr5B.!!$R3 514
12 TraesCS3B01G198000 chrUn 150787765 150788277 512 False 767.00 767 93.592000 2176 2690 1 chrUn.!!$F1 514
13 TraesCS3B01G198000 chr6A 256470704 256471644 940 False 465.50 483 91.120500 1435 2190 2 chr6A.!!$F2 755
14 TraesCS3B01G198000 chr4A 665728406 665728978 572 True 435.00 435 80.725000 1599 2198 1 chr4A.!!$R2 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.106167 ATGCCGTGGTAGCTCCTCTA 60.106 55.0 0.0 0.0 37.07 2.43 F
1325 1446 0.035439 TCAATTGCTCCCTCCGTTCC 60.035 55.0 0.0 0.0 0.00 3.62 F
1329 1450 0.183971 TTGCTCCCTCCGTTCCAAAA 59.816 50.0 0.0 0.0 0.00 2.44 F
1330 1451 0.404040 TGCTCCCTCCGTTCCAAAAT 59.596 50.0 0.0 0.0 0.00 1.82 F
2153 2471 0.726827 TTCATTGATCTTGCGACGGC 59.273 50.0 0.0 0.0 40.52 5.68 F
2402 2720 0.781787 CAACGACGATGTTCTTCGCA 59.218 50.0 0.0 0.0 41.11 5.10 F
4114 4556 1.034356 TCCTCGTCAACTGGTTCGAA 58.966 50.0 0.0 0.0 32.12 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1390 1511 0.036765 TGTCCAACGCATGTACTCCC 60.037 55.000 0.00 0.00 0.00 4.30 R
2627 2956 0.949397 TCCGCTCGCTAATATCACGT 59.051 50.000 0.00 0.00 0.00 4.49 R
2808 3137 1.570979 GGGGTTCCCTTCTGGATCAAT 59.429 52.381 7.87 0.00 44.66 2.57 R
3053 3415 2.874457 GCGGTTTCAGATTACACAGGGT 60.874 50.000 0.00 0.00 0.00 4.34 R
3966 4365 0.108804 GGTCGTCGCCAAATCTCTCA 60.109 55.000 1.46 0.00 0.00 3.27 R
4191 4636 5.122396 GGTGCCATAATCACGAGATTAATCC 59.878 44.000 17.37 11.82 46.62 3.01 R
5999 6741 0.037326 TCCAAGTGGTGCTCGTGATC 60.037 55.000 0.00 0.00 36.34 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.750018 CATCACCATGCAGCCGGAA 60.750 57.895 5.05 0.00 0.00 4.30
67 68 4.753877 TCGAGCGTGGCGAGTTCG 62.754 66.667 10.87 10.87 43.27 3.95
76 77 3.499737 GCGAGTTCGGCCATGTGG 61.500 66.667 2.24 0.00 40.23 4.17
77 78 2.264480 CGAGTTCGGCCATGTGGA 59.736 61.111 2.24 0.00 36.78 4.02
78 79 1.375396 CGAGTTCGGCCATGTGGAA 60.375 57.895 2.24 0.00 36.78 3.53
79 80 1.361668 CGAGTTCGGCCATGTGGAAG 61.362 60.000 2.24 0.00 36.78 3.46
80 81 1.002134 AGTTCGGCCATGTGGAAGG 60.002 57.895 2.24 0.00 37.39 3.46
85 86 2.763215 GCCATGTGGAAGGACCCA 59.237 61.111 2.55 0.00 37.39 4.51
106 107 1.414866 GCCAATGGGGTTTGTGGGTT 61.415 55.000 0.00 0.00 39.65 4.11
136 137 1.224592 GATCTCCGCCACCCATGTT 59.775 57.895 0.00 0.00 0.00 2.71
147 148 3.272042 CCATGTTCCCCACCCCCA 61.272 66.667 0.00 0.00 0.00 4.96
150 151 2.547595 ATGTTCCCCACCCCCACTG 61.548 63.158 0.00 0.00 0.00 3.66
172 173 1.068250 GATGCCGTGGTAGCTCCTC 59.932 63.158 0.00 0.00 37.07 3.71
174 175 0.106167 ATGCCGTGGTAGCTCCTCTA 60.106 55.000 0.00 0.00 37.07 2.43
182 183 2.187493 TAGCTCCTCTACGGCTGCG 61.187 63.158 0.00 0.00 37.16 5.18
241 242 2.353607 GAGGCGGCATCGTCGTAG 60.354 66.667 13.08 0.00 46.91 3.51
258 259 4.400961 GCGGCTGCTTGAGGAGGT 62.401 66.667 11.21 0.00 38.39 3.85
261 262 1.376466 GGCTGCTTGAGGAGGTTCA 59.624 57.895 0.00 0.00 33.79 3.18
283 284 2.507324 GAGAAGGACGCGTGGCTC 60.507 66.667 20.70 13.80 0.00 4.70
284 285 4.421479 AGAAGGACGCGTGGCTCG 62.421 66.667 20.70 4.32 43.12 5.03
390 417 2.042230 GCGGGGGAAGGAGAGGTA 60.042 66.667 0.00 0.00 0.00 3.08
398 425 1.699730 GAAGGAGAGGTAGAGGAGGC 58.300 60.000 0.00 0.00 0.00 4.70
400 427 1.529713 GGAGAGGTAGAGGAGGCGG 60.530 68.421 0.00 0.00 0.00 6.13
426 453 1.480137 AGGCGGAGAGAATGTGAAGAG 59.520 52.381 0.00 0.00 0.00 2.85
431 458 4.377841 GCGGAGAGAATGTGAAGAGTTTTG 60.378 45.833 0.00 0.00 0.00 2.44
432 459 4.153117 CGGAGAGAATGTGAAGAGTTTTGG 59.847 45.833 0.00 0.00 0.00 3.28
433 460 4.457257 GGAGAGAATGTGAAGAGTTTTGGG 59.543 45.833 0.00 0.00 0.00 4.12
436 463 5.053978 AGAATGTGAAGAGTTTTGGGTCT 57.946 39.130 0.00 0.00 0.00 3.85
438 465 3.644966 TGTGAAGAGTTTTGGGTCTGT 57.355 42.857 0.00 0.00 0.00 3.41
439 466 3.541632 TGTGAAGAGTTTTGGGTCTGTC 58.458 45.455 0.00 0.00 0.00 3.51
440 467 3.199946 TGTGAAGAGTTTTGGGTCTGTCT 59.800 43.478 0.00 0.00 0.00 3.41
441 468 4.407621 TGTGAAGAGTTTTGGGTCTGTCTA 59.592 41.667 0.00 0.00 0.00 2.59
442 469 4.991687 GTGAAGAGTTTTGGGTCTGTCTAG 59.008 45.833 0.00 0.00 0.00 2.43
443 470 4.040461 TGAAGAGTTTTGGGTCTGTCTAGG 59.960 45.833 0.00 0.00 0.00 3.02
444 471 3.858135 AGAGTTTTGGGTCTGTCTAGGA 58.142 45.455 0.00 0.00 0.00 2.94
445 472 3.579151 AGAGTTTTGGGTCTGTCTAGGAC 59.421 47.826 0.00 0.00 0.00 3.85
446 473 3.314693 AGTTTTGGGTCTGTCTAGGACA 58.685 45.455 0.43 0.43 40.50 4.02
447 474 3.071167 AGTTTTGGGTCTGTCTAGGACAC 59.929 47.826 0.00 0.00 37.67 3.67
448 475 2.391926 TTGGGTCTGTCTAGGACACA 57.608 50.000 0.00 0.00 44.14 3.72
449 476 2.623418 TGGGTCTGTCTAGGACACAT 57.377 50.000 0.00 0.00 41.46 3.21
450 477 2.457598 TGGGTCTGTCTAGGACACATC 58.542 52.381 0.00 0.00 41.46 3.06
451 478 2.043115 TGGGTCTGTCTAGGACACATCT 59.957 50.000 0.00 0.00 41.46 2.90
452 479 3.268595 TGGGTCTGTCTAGGACACATCTA 59.731 47.826 0.00 0.00 41.46 1.98
453 480 4.264217 TGGGTCTGTCTAGGACACATCTAA 60.264 45.833 0.00 0.00 41.46 2.10
454 481 4.710375 GGGTCTGTCTAGGACACATCTAAA 59.290 45.833 0.00 0.00 37.67 1.85
455 482 5.364157 GGGTCTGTCTAGGACACATCTAAAT 59.636 44.000 0.00 0.00 37.67 1.40
456 483 6.276847 GGTCTGTCTAGGACACATCTAAATG 58.723 44.000 0.00 0.00 37.67 2.32
497 524 7.664082 CATCTAAACTGATGTTCACTCTGTT 57.336 36.000 0.00 0.00 39.05 3.16
498 525 8.092521 CATCTAAACTGATGTTCACTCTGTTT 57.907 34.615 11.33 11.33 43.11 2.83
499 526 7.482654 TCTAAACTGATGTTCACTCTGTTTG 57.517 36.000 14.59 7.92 41.71 2.93
500 527 4.558538 AACTGATGTTCACTCTGTTTGC 57.441 40.909 0.00 0.00 32.83 3.68
501 528 2.545526 ACTGATGTTCACTCTGTTTGCG 59.454 45.455 0.00 0.00 0.00 4.85
502 529 2.802247 CTGATGTTCACTCTGTTTGCGA 59.198 45.455 0.00 0.00 0.00 5.10
503 530 3.402110 TGATGTTCACTCTGTTTGCGAT 58.598 40.909 0.00 0.00 0.00 4.58
504 531 3.433274 TGATGTTCACTCTGTTTGCGATC 59.567 43.478 0.00 0.00 0.00 3.69
505 532 3.111853 TGTTCACTCTGTTTGCGATCT 57.888 42.857 0.00 0.00 0.00 2.75
506 533 4.251543 TGTTCACTCTGTTTGCGATCTA 57.748 40.909 0.00 0.00 0.00 1.98
507 534 4.820897 TGTTCACTCTGTTTGCGATCTAT 58.179 39.130 0.00 0.00 0.00 1.98
508 535 5.237815 TGTTCACTCTGTTTGCGATCTATT 58.762 37.500 0.00 0.00 0.00 1.73
509 536 5.700832 TGTTCACTCTGTTTGCGATCTATTT 59.299 36.000 0.00 0.00 0.00 1.40
510 537 6.204688 TGTTCACTCTGTTTGCGATCTATTTT 59.795 34.615 0.00 0.00 0.00 1.82
511 538 6.801539 TCACTCTGTTTGCGATCTATTTTT 57.198 33.333 0.00 0.00 0.00 1.94
562 589 9.414295 CTTGTTGATGCATTATATATTTGTGGG 57.586 33.333 0.00 0.00 0.00 4.61
563 590 8.703378 TGTTGATGCATTATATATTTGTGGGA 57.297 30.769 0.00 0.00 0.00 4.37
564 591 8.795513 TGTTGATGCATTATATATTTGTGGGAG 58.204 33.333 0.00 0.00 0.00 4.30
565 592 7.395190 TGATGCATTATATATTTGTGGGAGC 57.605 36.000 0.00 0.00 0.00 4.70
566 593 7.177184 TGATGCATTATATATTTGTGGGAGCT 58.823 34.615 0.00 0.00 0.00 4.09
567 594 7.670979 TGATGCATTATATATTTGTGGGAGCTT 59.329 33.333 0.00 0.00 0.00 3.74
568 595 9.177608 GATGCATTATATATTTGTGGGAGCTTA 57.822 33.333 0.00 0.00 0.00 3.09
569 596 8.565896 TGCATTATATATTTGTGGGAGCTTAG 57.434 34.615 0.00 0.00 0.00 2.18
570 597 8.382405 TGCATTATATATTTGTGGGAGCTTAGA 58.618 33.333 0.00 0.00 0.00 2.10
571 598 9.401058 GCATTATATATTTGTGGGAGCTTAGAT 57.599 33.333 0.00 0.00 0.00 1.98
574 601 9.725019 TTATATATTTGTGGGAGCTTAGATGTG 57.275 33.333 0.00 0.00 0.00 3.21
575 602 4.574674 ATTTGTGGGAGCTTAGATGTGA 57.425 40.909 0.00 0.00 0.00 3.58
576 603 3.334583 TTGTGGGAGCTTAGATGTGAC 57.665 47.619 0.00 0.00 0.00 3.67
577 604 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
578 605 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
579 606 4.030216 TGTGGGAGCTTAGATGTGACATA 58.970 43.478 0.00 0.00 0.00 2.29
580 607 4.141937 TGTGGGAGCTTAGATGTGACATAC 60.142 45.833 0.00 0.00 0.00 2.39
581 608 4.100189 GTGGGAGCTTAGATGTGACATACT 59.900 45.833 0.00 0.48 0.00 2.12
582 609 4.716784 TGGGAGCTTAGATGTGACATACTT 59.283 41.667 0.00 0.00 0.00 2.24
583 610 5.897250 TGGGAGCTTAGATGTGACATACTTA 59.103 40.000 0.00 0.00 0.00 2.24
584 611 6.382859 TGGGAGCTTAGATGTGACATACTTAA 59.617 38.462 0.00 0.00 0.00 1.85
585 612 7.093068 TGGGAGCTTAGATGTGACATACTTAAA 60.093 37.037 0.00 0.00 0.00 1.52
586 613 7.769044 GGGAGCTTAGATGTGACATACTTAAAA 59.231 37.037 0.00 0.00 0.00 1.52
587 614 9.162764 GGAGCTTAGATGTGACATACTTAAAAA 57.837 33.333 0.00 0.00 0.00 1.94
617 644 9.645059 TCTAGATGTGAATTAGACAAACTGAAG 57.355 33.333 0.00 0.00 0.00 3.02
618 645 9.645059 CTAGATGTGAATTAGACAAACTGAAGA 57.355 33.333 0.00 0.00 0.00 2.87
619 646 8.908786 AGATGTGAATTAGACAAACTGAAGAA 57.091 30.769 0.00 0.00 0.00 2.52
620 647 9.512588 AGATGTGAATTAGACAAACTGAAGAAT 57.487 29.630 0.00 0.00 0.00 2.40
630 657 8.293699 AGACAAACTGAAGAATTTTTACTGGT 57.706 30.769 0.00 0.00 0.00 4.00
631 658 8.749354 AGACAAACTGAAGAATTTTTACTGGTT 58.251 29.630 0.00 0.00 0.00 3.67
635 662 5.116069 TGAAGAATTTTTACTGGTTCGCC 57.884 39.130 0.00 0.00 37.92 5.54
638 665 3.816523 AGAATTTTTACTGGTTCGCCGAA 59.183 39.130 0.00 0.00 41.18 4.30
675 703 3.857038 GGAGATGCGGCCCCGTTA 61.857 66.667 8.66 0.00 42.09 3.18
676 704 2.426023 GAGATGCGGCCCCGTTAT 59.574 61.111 8.66 3.66 42.09 1.89
678 706 1.507141 GAGATGCGGCCCCGTTATTG 61.507 60.000 8.66 0.00 42.09 1.90
679 707 2.518349 ATGCGGCCCCGTTATTGG 60.518 61.111 8.66 0.00 42.09 3.16
688 736 1.144093 CCCCGTTATTGGCTATTGGGA 59.856 52.381 12.69 0.00 37.35 4.37
689 737 2.225017 CCCCGTTATTGGCTATTGGGAT 60.225 50.000 12.69 0.00 37.35 3.85
693 741 4.062293 CGTTATTGGCTATTGGGATTCGA 58.938 43.478 0.00 0.00 0.00 3.71
706 754 2.592194 GGATTCGATTAGATGCGCGTA 58.408 47.619 8.43 2.40 0.00 4.42
707 755 3.179830 GGATTCGATTAGATGCGCGTAT 58.820 45.455 10.20 10.20 0.00 3.06
708 756 3.612860 GGATTCGATTAGATGCGCGTATT 59.387 43.478 11.96 4.22 0.00 1.89
709 757 4.091509 GGATTCGATTAGATGCGCGTATTT 59.908 41.667 11.96 8.46 0.00 1.40
710 758 5.389516 GGATTCGATTAGATGCGCGTATTTT 60.390 40.000 11.96 5.78 0.00 1.82
711 759 5.398176 TTCGATTAGATGCGCGTATTTTT 57.602 34.783 11.96 3.18 0.00 1.94
713 761 5.897133 TCGATTAGATGCGCGTATTTTTAC 58.103 37.500 11.96 0.00 0.00 2.01
717 772 6.897259 TTAGATGCGCGTATTTTTACTTCT 57.103 33.333 11.96 4.50 0.00 2.85
915 992 2.287457 TATACCCACGGCACAGACGC 62.287 60.000 0.00 0.00 37.73 5.19
1260 1381 1.433053 CCCACGACGTCAGCAACAAA 61.433 55.000 17.16 0.00 0.00 2.83
1313 1434 7.519002 ACTTATACGAGAACAAAGTCAATTGC 58.481 34.615 0.00 0.00 33.52 3.56
1314 1435 7.387948 ACTTATACGAGAACAAAGTCAATTGCT 59.612 33.333 0.00 0.00 33.52 3.91
1315 1436 4.474226 ACGAGAACAAAGTCAATTGCTC 57.526 40.909 0.00 0.00 33.52 4.26
1316 1437 3.251004 ACGAGAACAAAGTCAATTGCTCC 59.749 43.478 0.00 0.00 33.52 4.70
1317 1438 3.365364 CGAGAACAAAGTCAATTGCTCCC 60.365 47.826 0.00 0.00 33.52 4.30
1318 1439 3.823304 GAGAACAAAGTCAATTGCTCCCT 59.177 43.478 0.00 0.00 33.52 4.20
1319 1440 3.823304 AGAACAAAGTCAATTGCTCCCTC 59.177 43.478 0.00 0.00 33.52 4.30
1320 1441 2.519013 ACAAAGTCAATTGCTCCCTCC 58.481 47.619 0.00 0.00 33.52 4.30
1322 1443 0.693049 AAGTCAATTGCTCCCTCCGT 59.307 50.000 0.00 0.00 0.00 4.69
1325 1446 0.035439 TCAATTGCTCCCTCCGTTCC 60.035 55.000 0.00 0.00 0.00 3.62
1327 1448 0.404040 AATTGCTCCCTCCGTTCCAA 59.596 50.000 0.00 0.00 0.00 3.53
1328 1449 0.404040 ATTGCTCCCTCCGTTCCAAA 59.596 50.000 0.00 0.00 0.00 3.28
1329 1450 0.183971 TTGCTCCCTCCGTTCCAAAA 59.816 50.000 0.00 0.00 0.00 2.44
1330 1451 0.404040 TGCTCCCTCCGTTCCAAAAT 59.596 50.000 0.00 0.00 0.00 1.82
1332 1453 2.040545 TGCTCCCTCCGTTCCAAAATAA 59.959 45.455 0.00 0.00 0.00 1.40
1333 1454 3.086282 GCTCCCTCCGTTCCAAAATAAA 58.914 45.455 0.00 0.00 0.00 1.40
1335 1456 4.440112 GCTCCCTCCGTTCCAAAATAAATG 60.440 45.833 0.00 0.00 0.00 2.32
1336 1457 4.924625 TCCCTCCGTTCCAAAATAAATGA 58.075 39.130 0.00 0.00 0.00 2.57
1339 1460 5.163652 CCCTCCGTTCCAAAATAAATGACTC 60.164 44.000 0.00 0.00 0.00 3.36
1341 1462 6.072175 CCTCCGTTCCAAAATAAATGACTCAA 60.072 38.462 0.00 0.00 0.00 3.02
1343 1464 7.891561 TCCGTTCCAAAATAAATGACTCAATT 58.108 30.769 0.00 0.00 0.00 2.32
1384 1505 9.739276 ATACAAAGTTGACTCATCCATTTTAGA 57.261 29.630 0.00 0.00 0.00 2.10
1385 1506 8.463930 ACAAAGTTGACTCATCCATTTTAGAA 57.536 30.769 0.00 0.00 0.00 2.10
1386 1507 8.352942 ACAAAGTTGACTCATCCATTTTAGAAC 58.647 33.333 0.00 0.00 0.00 3.01
1387 1508 8.352201 CAAAGTTGACTCATCCATTTTAGAACA 58.648 33.333 0.00 0.00 0.00 3.18
1388 1509 8.463930 AAGTTGACTCATCCATTTTAGAACAA 57.536 30.769 0.00 0.00 0.00 2.83
1389 1510 8.463930 AGTTGACTCATCCATTTTAGAACAAA 57.536 30.769 0.00 0.00 0.00 2.83
1390 1511 8.571336 AGTTGACTCATCCATTTTAGAACAAAG 58.429 33.333 0.00 0.00 0.00 2.77
1391 1512 7.452880 TGACTCATCCATTTTAGAACAAAGG 57.547 36.000 0.00 0.00 0.00 3.11
1392 1513 6.434028 TGACTCATCCATTTTAGAACAAAGGG 59.566 38.462 0.00 0.00 38.68 3.95
1394 1515 6.660949 ACTCATCCATTTTAGAACAAAGGGAG 59.339 38.462 5.84 0.00 46.80 4.30
1395 1516 6.552008 TCATCCATTTTAGAACAAAGGGAGT 58.448 36.000 5.84 0.00 46.80 3.85
1396 1517 7.695055 TCATCCATTTTAGAACAAAGGGAGTA 58.305 34.615 5.84 0.00 46.80 2.59
1402 1523 2.699954 AGAACAAAGGGAGTACATGCG 58.300 47.619 0.00 0.00 0.00 4.73
1484 1605 3.260931 GAAAGTTTCGGCCGGTCC 58.739 61.111 27.83 13.07 0.00 4.46
1570 1691 2.743636 TCCGCTTCGTCTTCAATCTT 57.256 45.000 0.00 0.00 0.00 2.40
1582 1703 2.454336 TCAATCTTCGCCTCCTCCTA 57.546 50.000 0.00 0.00 0.00 2.94
1586 1707 0.854218 TCTTCGCCTCCTCCTATCCT 59.146 55.000 0.00 0.00 0.00 3.24
1589 1715 1.743589 TCGCCTCCTCCTATCCTCTA 58.256 55.000 0.00 0.00 0.00 2.43
1605 1731 1.222936 CTACCCTCCTGCTTGCAGG 59.777 63.158 29.89 29.89 43.59 4.85
1612 1738 2.031012 CTGCTTGCAGGACCGTCA 59.969 61.111 14.25 0.00 0.00 4.35
1646 1772 4.416738 GCCTGCTTCCCGCCTCTT 62.417 66.667 0.00 0.00 38.05 2.85
1687 1813 1.828660 CCTCTGCCTATCCCGTCGT 60.829 63.158 0.00 0.00 0.00 4.34
1806 1932 2.360350 CATCAACGGTGCCAGCCT 60.360 61.111 0.00 0.00 0.00 4.58
1807 1933 2.360350 ATCAACGGTGCCAGCCTG 60.360 61.111 0.00 0.00 0.00 4.85
1826 1970 1.270947 TGTCCCGTCGCTAATGGTTTT 60.271 47.619 0.00 0.00 31.33 2.43
1907 2220 6.348704 GCTTCCAGCAAAACTAAAATACGGTA 60.349 38.462 0.00 0.00 41.89 4.02
1948 2261 3.565516 GTCCAGCAAATCGAAAAAGGAC 58.434 45.455 8.63 8.63 37.70 3.85
1986 2300 6.058183 GTGTATGGTTCCAGCAAATAGAGAT 58.942 40.000 0.00 0.00 0.00 2.75
2116 2433 5.999205 TGACAATGGTTCCAGCAAATTAT 57.001 34.783 0.00 0.00 0.00 1.28
2153 2471 0.726827 TTCATTGATCTTGCGACGGC 59.273 50.000 0.00 0.00 40.52 5.68
2402 2720 0.781787 CAACGACGATGTTCTTCGCA 59.218 50.000 0.00 0.00 41.11 5.10
2437 2755 3.508012 CCTCGTACAATAGCTGGCTCTAT 59.492 47.826 0.00 0.00 0.00 1.98
2455 2774 5.413213 GCTCTATCTATGGCGTTCTAAGAGA 59.587 44.000 10.98 0.00 31.68 3.10
2456 2775 6.072397 GCTCTATCTATGGCGTTCTAAGAGAA 60.072 42.308 10.98 0.00 31.68 2.87
2542 2870 1.452289 CGGGGTGTGTGGACAACAA 60.452 57.895 0.00 0.00 42.14 2.83
2549 2877 1.066787 TGTGTGGACAACAACTCACGA 60.067 47.619 0.00 0.00 41.57 4.35
2576 2905 2.688446 GGATAAGAAGAAAAAGCGGGGG 59.312 50.000 0.00 0.00 0.00 5.40
2577 2906 1.541379 TAAGAAGAAAAAGCGGGGGC 58.459 50.000 0.00 0.00 0.00 5.80
2578 2907 1.524008 AAGAAGAAAAAGCGGGGGCG 61.524 55.000 0.00 0.00 0.00 6.13
2621 2950 4.443621 TGACGTGGTCTTGTTTTGTGATA 58.556 39.130 0.00 0.00 33.15 2.15
2627 2956 3.496884 GGTCTTGTTTTGTGATAGCGACA 59.503 43.478 0.00 0.00 0.00 4.35
2690 3019 1.139853 ACCGGGTGTAAACGTTTACCA 59.860 47.619 35.87 25.18 41.72 3.25
2808 3137 2.001269 GGAAGAGCTGGGGCCCTTA 61.001 63.158 25.93 10.66 36.65 2.69
2903 3263 2.979813 GTCACATTGCCGTCAAACAATC 59.020 45.455 0.00 0.00 34.32 2.67
2907 3269 3.181397 CATTGCCGTCAAACAATCCATC 58.819 45.455 0.00 0.00 34.32 3.51
2908 3270 2.198827 TGCCGTCAAACAATCCATCT 57.801 45.000 0.00 0.00 0.00 2.90
2909 3271 2.513753 TGCCGTCAAACAATCCATCTT 58.486 42.857 0.00 0.00 0.00 2.40
3053 3415 4.322080 AGAAATCCGATAACGCTCATGA 57.678 40.909 0.00 0.00 38.29 3.07
3966 4365 1.375523 GAACACCACCGCCGATCTT 60.376 57.895 0.00 0.00 0.00 2.40
4008 4407 5.405571 CCTCGCTGGTACATATGAATTGTAC 59.594 44.000 10.38 2.24 45.57 2.90
4114 4556 1.034356 TCCTCGTCAACTGGTTCGAA 58.966 50.000 0.00 0.00 32.12 3.71
4191 4636 3.490419 GGTGATTACTGCTACTACCCGTG 60.490 52.174 0.00 0.00 0.00 4.94
4225 4670 5.163663 CGTGATTATGGCACCACATTAACTT 60.164 40.000 0.00 0.00 32.74 2.66
4232 4677 5.005094 TGGCACCACATTAACTTAGGTAAC 58.995 41.667 0.00 0.00 0.00 2.50
4546 5006 0.747255 AGCTCTACGACGCCATCAAT 59.253 50.000 0.00 0.00 0.00 2.57
4597 5057 1.928706 GCAGCGACTTCTCCTCGTCT 61.929 60.000 0.00 0.00 33.51 4.18
5041 5534 3.681835 GTGCCCGTCTCGTCCACT 61.682 66.667 0.00 0.00 0.00 4.00
5044 5537 2.745100 CCCGTCTCGTCCACTCGA 60.745 66.667 0.00 0.00 38.19 4.04
5053 5546 3.749064 TCCACTCGACAGGCGCTC 61.749 66.667 7.64 0.00 40.61 5.03
5135 5628 0.968901 CGGCTACCAGGTGGACTACA 60.969 60.000 7.25 0.00 38.94 2.74
5161 5654 0.896479 TCACCTTCGTCACCATCCGA 60.896 55.000 0.00 0.00 0.00 4.55
5261 5754 1.379710 CCGCCCAAACCCATCATCA 60.380 57.895 0.00 0.00 0.00 3.07
5265 5758 1.396653 CCCAAACCCATCATCAGCTC 58.603 55.000 0.00 0.00 0.00 4.09
5352 5866 6.951062 TGTTTGATTGGAATTGTAGTGTCA 57.049 33.333 0.00 0.00 0.00 3.58
5353 5867 6.969366 TGTTTGATTGGAATTGTAGTGTCAG 58.031 36.000 0.00 0.00 0.00 3.51
5372 5886 9.877178 AGTGTCAGATATCTAGTTTCGAATTTT 57.123 29.630 4.54 0.00 0.00 1.82
5488 6036 9.219603 CAGAACTGAACTTATCAAAATGAGGTA 57.780 33.333 0.00 0.00 37.67 3.08
5515 6063 5.250235 TCTAATTTGGTGCGTTCAAACAA 57.750 34.783 1.90 0.00 37.00 2.83
5518 6066 4.591998 ATTTGGTGCGTTCAAACAAAAC 57.408 36.364 0.00 0.00 37.00 2.43
5572 6127 0.328258 AAGCTTGGTACGGGCAGATT 59.672 50.000 0.00 0.00 0.00 2.40
5576 6131 1.737793 CTTGGTACGGGCAGATTGAAC 59.262 52.381 0.00 0.00 0.00 3.18
5595 6150 3.673484 CAGCTGTTGCGGTTGGGG 61.673 66.667 5.25 0.00 45.42 4.96
5624 6179 3.577649 TTCGCTATGATGCCTAGCTAC 57.422 47.619 0.00 0.00 39.55 3.58
5649 6204 0.107654 GCATCTCTAGCCCAACCGTT 60.108 55.000 0.00 0.00 0.00 4.44
5668 6375 7.854557 ACCGTTAAAAAGTCTTAACTCAAGT 57.145 32.000 5.09 0.00 38.89 3.16
5733 6440 4.110493 GAGAATCCTTCACCGGCG 57.890 61.111 0.00 0.00 0.00 6.46
5736 6443 1.745489 GAATCCTTCACCGGCGCTT 60.745 57.895 7.64 0.00 0.00 4.68
5737 6444 1.706287 GAATCCTTCACCGGCGCTTC 61.706 60.000 7.64 0.00 0.00 3.86
5738 6445 3.682292 ATCCTTCACCGGCGCTTCC 62.682 63.158 7.64 0.00 0.00 3.46
5740 6447 3.423154 CTTCACCGGCGCTTCCAC 61.423 66.667 7.64 0.00 34.01 4.02
5756 6480 2.125512 ACATCGCTCAACGCCCTC 60.126 61.111 0.00 0.00 43.23 4.30
5761 6485 4.070552 GCTCAACGCCCTCGACCT 62.071 66.667 0.00 0.00 39.41 3.85
5783 6507 4.974438 AACCCCGCCCACCTCTCA 62.974 66.667 0.00 0.00 0.00 3.27
5806 6530 0.249447 CATGGTAGATTCGCTCGCCA 60.249 55.000 0.00 0.00 37.89 5.69
5810 6534 0.924090 GTAGATTCGCTCGCCAACAG 59.076 55.000 0.00 0.00 0.00 3.16
5812 6536 2.358615 ATTCGCTCGCCAACAGCA 60.359 55.556 0.00 0.00 44.04 4.41
5815 6539 2.428960 TTCGCTCGCCAACAGCACTA 62.429 55.000 0.00 0.00 44.04 2.74
5819 6543 0.319900 CTCGCCAACAGCACTACAGT 60.320 55.000 0.00 0.00 44.04 3.55
5821 6545 0.512952 CGCCAACAGCACTACAGTTC 59.487 55.000 0.00 0.00 44.04 3.01
5825 6549 3.067106 CCAACAGCACTACAGTTCGAAT 58.933 45.455 0.00 0.00 0.00 3.34
5843 6567 3.679917 CGAATCATCCCATATCTTCCCCG 60.680 52.174 0.00 0.00 0.00 5.73
5849 6573 1.745890 CATATCTTCCCCGTCGCCA 59.254 57.895 0.00 0.00 0.00 5.69
5868 6592 3.691342 CGGGCTCTCGTGGGTGAA 61.691 66.667 0.00 0.00 0.00 3.18
5869 6593 2.747686 GGGCTCTCGTGGGTGAAA 59.252 61.111 0.00 0.00 0.00 2.69
5870 6594 1.072505 GGGCTCTCGTGGGTGAAAA 59.927 57.895 0.00 0.00 0.00 2.29
5871 6595 0.536460 GGGCTCTCGTGGGTGAAAAA 60.536 55.000 0.00 0.00 0.00 1.94
5872 6596 0.875059 GGCTCTCGTGGGTGAAAAAG 59.125 55.000 0.00 0.00 0.00 2.27
5873 6597 0.875059 GCTCTCGTGGGTGAAAAAGG 59.125 55.000 0.00 0.00 0.00 3.11
5874 6598 0.875059 CTCTCGTGGGTGAAAAAGGC 59.125 55.000 0.00 0.00 0.00 4.35
5887 6611 2.983725 AAAAGGCCACCGCTGAGCTT 62.984 55.000 5.01 0.00 34.44 3.74
5894 6618 1.148273 ACCGCTGAGCTTGGTTTCA 59.852 52.632 1.78 0.00 29.87 2.69
5897 6621 1.159285 CGCTGAGCTTGGTTTCATCA 58.841 50.000 1.78 0.00 0.00 3.07
5902 6626 4.992951 GCTGAGCTTGGTTTCATCAAAAAT 59.007 37.500 0.00 0.00 0.00 1.82
5911 6635 5.536916 TGGTTTCATCAAAAATAGAACCGGT 59.463 36.000 0.00 0.00 0.00 5.28
5934 6658 2.226269 GACCATAATGTCGCCGAGC 58.774 57.895 0.00 0.00 0.00 5.03
5935 6659 0.529773 GACCATAATGTCGCCGAGCA 60.530 55.000 0.00 0.00 0.00 4.26
5936 6660 0.810031 ACCATAATGTCGCCGAGCAC 60.810 55.000 0.00 0.00 0.00 4.40
5937 6661 1.498865 CCATAATGTCGCCGAGCACC 61.499 60.000 0.00 0.00 0.00 5.01
5939 6663 0.106708 ATAATGTCGCCGAGCACCAT 59.893 50.000 0.00 0.00 0.00 3.55
5940 6664 0.107897 TAATGTCGCCGAGCACCATT 60.108 50.000 6.04 6.04 34.50 3.16
5941 6665 0.107897 AATGTCGCCGAGCACCATTA 60.108 50.000 0.00 0.00 30.47 1.90
5942 6666 0.106708 ATGTCGCCGAGCACCATTAT 59.893 50.000 0.00 0.00 0.00 1.28
5943 6667 0.809636 TGTCGCCGAGCACCATTATG 60.810 55.000 0.00 0.00 0.00 1.90
5944 6668 1.227527 TCGCCGAGCACCATTATGG 60.228 57.895 10.08 10.08 45.02 2.74
5945 6669 2.896801 CGCCGAGCACCATTATGGC 61.897 63.158 11.72 0.00 42.67 4.40
5946 6670 2.555547 GCCGAGCACCATTATGGCC 61.556 63.158 11.72 0.00 42.67 5.36
5947 6671 1.152984 CCGAGCACCATTATGGCCA 60.153 57.895 8.56 8.56 42.67 5.36
5948 6672 1.447317 CCGAGCACCATTATGGCCAC 61.447 60.000 8.16 0.78 42.67 5.01
5969 6711 6.068931 CCACACTAGTGTTATTTCGAAAACG 58.931 40.000 25.89 9.65 44.39 3.60
5984 6726 2.819550 ACGGGAGTTCAACTGCGT 59.180 55.556 2.58 2.09 43.33 5.24
5985 6727 1.300697 ACGGGAGTTCAACTGCGTC 60.301 57.895 2.58 0.00 43.33 5.19
5998 6740 2.278271 GCGTCGAGCCTAGTCAGC 60.278 66.667 0.00 0.00 40.81 4.26
5999 6741 2.023461 CGTCGAGCCTAGTCAGCG 59.977 66.667 0.00 0.00 34.64 5.18
6004 6746 0.317436 CGAGCCTAGTCAGCGATCAC 60.317 60.000 0.00 0.00 34.64 3.06
6011 6753 2.161486 GTCAGCGATCACGAGCACC 61.161 63.158 0.00 0.00 42.66 5.01
6048 6790 0.908198 CCTCCTTAGAGCTTGCAGGT 59.092 55.000 0.00 0.00 38.96 4.00
6077 6819 2.036098 CCAGCCATCCACCAGCAA 59.964 61.111 0.00 0.00 0.00 3.91
6088 6830 4.680237 CCAGCAACCTCGGCGTCA 62.680 66.667 6.85 0.00 36.08 4.35
6098 6840 1.078759 CTCGGCGTCACCTCAATGTC 61.079 60.000 6.85 0.00 35.61 3.06
6105 6847 1.374125 CACCTCAATGTCGTCGGCA 60.374 57.895 0.14 0.14 0.00 5.69
6128 6870 1.251527 GCTCTCACCTCCTCCGTTCA 61.252 60.000 0.00 0.00 0.00 3.18
6136 6878 1.202651 CCTCCTCCGTTCACAAAGTGT 60.203 52.381 0.00 0.00 34.79 3.55
6145 6888 5.067153 TCCGTTCACAAAGTGTTCATGAATT 59.933 36.000 12.12 0.00 34.79 2.17
6146 6889 5.173673 CCGTTCACAAAGTGTTCATGAATTG 59.826 40.000 12.12 13.83 34.79 2.32
6149 6892 5.042593 TCACAAAGTGTTCATGAATTGCAC 58.957 37.500 12.12 14.56 34.79 4.57
6151 6894 5.464057 CACAAAGTGTTCATGAATTGCACAT 59.536 36.000 22.48 12.73 33.98 3.21
6161 6904 8.928733 GTTCATGAATTGCACATGTAAGATTTT 58.071 29.630 12.12 0.00 43.56 1.82
6217 6960 7.747155 TTGCAATCAAATCCAACATGAAATT 57.253 28.000 0.00 0.00 0.00 1.82
6225 6968 8.937884 TCAAATCCAACATGAAATTTTGCATAG 58.062 29.630 0.00 0.00 32.79 2.23
6233 6976 9.577110 AACATGAAATTTTGCATAGTGTAGATG 57.423 29.630 0.00 0.00 0.00 2.90
6258 7001 4.160626 AGAGGTTAAGGGAGATGTTCTTCG 59.839 45.833 0.00 0.00 0.00 3.79
6268 7011 4.862018 GGAGATGTTCTTCGAAGACTCTTG 59.138 45.833 28.40 7.50 34.32 3.02
6269 7012 5.336055 GGAGATGTTCTTCGAAGACTCTTGA 60.336 44.000 28.40 14.50 34.32 3.02
6270 7013 6.279513 AGATGTTCTTCGAAGACTCTTGAT 57.720 37.500 27.03 12.24 34.32 2.57
6271 7014 7.397892 AGATGTTCTTCGAAGACTCTTGATA 57.602 36.000 27.03 10.47 34.32 2.15
6272 7015 7.254852 AGATGTTCTTCGAAGACTCTTGATAC 58.745 38.462 27.03 19.01 34.32 2.24
6273 7016 5.391449 TGTTCTTCGAAGACTCTTGATACG 58.609 41.667 27.03 0.00 34.32 3.06
6274 7017 5.048921 TGTTCTTCGAAGACTCTTGATACGT 60.049 40.000 27.03 0.00 34.32 3.57
6275 7018 4.971008 TCTTCGAAGACTCTTGATACGTG 58.029 43.478 23.74 0.00 34.32 4.49
6276 7019 3.759527 TCGAAGACTCTTGATACGTGG 57.240 47.619 0.00 0.00 0.00 4.94
6277 7020 3.340928 TCGAAGACTCTTGATACGTGGA 58.659 45.455 0.00 0.00 0.00 4.02
6278 7021 3.374367 TCGAAGACTCTTGATACGTGGAG 59.626 47.826 0.00 0.70 0.00 3.86
6279 7022 3.487711 CGAAGACTCTTGATACGTGGAGG 60.488 52.174 0.00 0.00 0.00 4.30
6280 7023 3.367646 AGACTCTTGATACGTGGAGGA 57.632 47.619 0.00 0.00 0.00 3.71
6281 7024 3.283751 AGACTCTTGATACGTGGAGGAG 58.716 50.000 0.00 2.17 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.015406 ACATGGCCGAACTCGCCA 62.015 61.111 14.59 14.59 44.71 5.69
58 59 3.499737 CACATGGCCGAACTCGCC 61.500 66.667 0.00 5.86 38.18 5.54
64 65 1.002624 GTCCTTCCACATGGCCGAA 60.003 57.895 0.00 0.00 34.44 4.30
65 66 2.668632 GTCCTTCCACATGGCCGA 59.331 61.111 0.00 0.00 34.44 5.54
66 67 2.438434 GGTCCTTCCACATGGCCG 60.438 66.667 0.00 0.00 35.97 6.13
67 68 2.043953 GGGTCCTTCCACATGGCC 60.044 66.667 0.00 0.00 38.11 5.36
68 69 0.967380 CTTGGGTCCTTCCACATGGC 60.967 60.000 0.00 0.00 36.38 4.40
69 70 0.967380 GCTTGGGTCCTTCCACATGG 60.967 60.000 0.00 0.00 36.38 3.66
70 71 0.967380 GGCTTGGGTCCTTCCACATG 60.967 60.000 0.00 0.00 36.38 3.21
71 72 1.384191 GGCTTGGGTCCTTCCACAT 59.616 57.895 0.00 0.00 36.38 3.21
72 73 1.650242 TTGGCTTGGGTCCTTCCACA 61.650 55.000 0.00 0.00 36.38 4.17
73 74 0.251787 ATTGGCTTGGGTCCTTCCAC 60.252 55.000 0.00 0.00 36.38 4.02
74 75 0.251742 CATTGGCTTGGGTCCTTCCA 60.252 55.000 0.00 0.00 38.11 3.53
75 76 0.972471 CCATTGGCTTGGGTCCTTCC 60.972 60.000 0.00 0.00 32.80 3.46
76 77 2.583472 CCATTGGCTTGGGTCCTTC 58.417 57.895 0.00 0.00 32.80 3.46
77 78 4.872293 CCATTGGCTTGGGTCCTT 57.128 55.556 0.00 0.00 32.80 3.36
85 86 1.126948 CCCACAAACCCCATTGGCTT 61.127 55.000 0.00 0.00 37.83 4.35
95 96 1.954382 GGACAGAGAAACCCACAAACC 59.046 52.381 0.00 0.00 0.00 3.27
106 107 1.095600 CGGAGATCACGGACAGAGAA 58.904 55.000 0.00 0.00 0.00 2.87
241 242 3.909086 AACCTCCTCAAGCAGCCGC 62.909 63.158 0.00 0.00 38.99 6.53
258 259 2.970639 CGTCCTTCTCCGCCTGAA 59.029 61.111 0.00 0.00 0.00 3.02
294 295 4.819761 TCTGCAGCGCGGATCCAC 62.820 66.667 13.03 0.00 39.19 4.02
308 309 2.105128 GTCCCCGTCGCTGATCTG 59.895 66.667 0.00 0.00 0.00 2.90
309 310 3.148279 GGTCCCCGTCGCTGATCT 61.148 66.667 0.00 0.00 0.00 2.75
374 401 0.468400 CTCTACCTCTCCTTCCCCCG 60.468 65.000 0.00 0.00 0.00 5.73
379 406 1.699730 GCCTCCTCTACCTCTCCTTC 58.300 60.000 0.00 0.00 0.00 3.46
381 408 1.534697 CGCCTCCTCTACCTCTCCT 59.465 63.158 0.00 0.00 0.00 3.69
382 409 1.529713 CCGCCTCCTCTACCTCTCC 60.530 68.421 0.00 0.00 0.00 3.71
383 410 0.536460 CTCCGCCTCCTCTACCTCTC 60.536 65.000 0.00 0.00 0.00 3.20
384 411 0.989212 TCTCCGCCTCCTCTACCTCT 60.989 60.000 0.00 0.00 0.00 3.69
385 412 0.536460 CTCTCCGCCTCCTCTACCTC 60.536 65.000 0.00 0.00 0.00 3.85
386 413 1.534697 CTCTCCGCCTCCTCTACCT 59.465 63.158 0.00 0.00 0.00 3.08
387 414 1.529713 CCTCTCCGCCTCCTCTACC 60.530 68.421 0.00 0.00 0.00 3.18
388 415 0.536460 CTCCTCTCCGCCTCCTCTAC 60.536 65.000 0.00 0.00 0.00 2.59
389 416 1.710996 CCTCCTCTCCGCCTCCTCTA 61.711 65.000 0.00 0.00 0.00 2.43
390 417 2.600731 CTCCTCTCCGCCTCCTCT 59.399 66.667 0.00 0.00 0.00 3.69
398 425 2.895426 TTCTCTCCGCCTCCTCTCCG 62.895 65.000 0.00 0.00 0.00 4.63
400 427 0.673437 CATTCTCTCCGCCTCCTCTC 59.327 60.000 0.00 0.00 0.00 3.20
426 453 3.181458 TGTGTCCTAGACAGACCCAAAAC 60.181 47.826 0.00 0.00 43.57 2.43
431 458 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
432 459 5.916661 TTTAGATGTGTCCTAGACAGACC 57.083 43.478 0.00 0.00 43.57 3.85
433 460 6.868622 ACATTTAGATGTGTCCTAGACAGAC 58.131 40.000 0.00 0.00 44.64 3.51
444 471 9.890629 ACATAACTATGTCACATTTAGATGTGT 57.109 29.630 21.89 9.11 45.57 3.72
474 501 7.308229 GCAAACAGAGTGAACATCAGTTTAGAT 60.308 37.037 0.00 0.00 38.30 1.98
475 502 6.017934 GCAAACAGAGTGAACATCAGTTTAGA 60.018 38.462 0.00 0.00 38.30 2.10
476 503 6.138761 GCAAACAGAGTGAACATCAGTTTAG 58.861 40.000 0.00 0.00 38.30 1.85
477 504 5.277297 CGCAAACAGAGTGAACATCAGTTTA 60.277 40.000 0.00 0.00 38.30 2.01
478 505 4.496341 CGCAAACAGAGTGAACATCAGTTT 60.496 41.667 0.00 0.00 38.30 2.66
479 506 3.002656 CGCAAACAGAGTGAACATCAGTT 59.997 43.478 0.00 0.00 41.64 3.16
480 507 2.545526 CGCAAACAGAGTGAACATCAGT 59.454 45.455 0.00 0.00 31.62 3.41
481 508 2.802247 TCGCAAACAGAGTGAACATCAG 59.198 45.455 0.00 0.00 0.00 2.90
482 509 2.832563 TCGCAAACAGAGTGAACATCA 58.167 42.857 0.00 0.00 0.00 3.07
483 510 3.681897 AGATCGCAAACAGAGTGAACATC 59.318 43.478 0.00 0.00 0.00 3.06
484 511 3.668447 AGATCGCAAACAGAGTGAACAT 58.332 40.909 0.00 0.00 0.00 2.71
485 512 3.111853 AGATCGCAAACAGAGTGAACA 57.888 42.857 0.00 0.00 0.00 3.18
486 513 5.786401 AATAGATCGCAAACAGAGTGAAC 57.214 39.130 0.00 0.00 0.00 3.18
487 514 6.801539 AAAATAGATCGCAAACAGAGTGAA 57.198 33.333 0.00 0.00 0.00 3.18
488 515 6.801539 AAAAATAGATCGCAAACAGAGTGA 57.198 33.333 0.00 0.00 0.00 3.41
536 563 9.414295 CCCACAAATATATAATGCATCAACAAG 57.586 33.333 0.00 0.00 0.00 3.16
537 564 9.140874 TCCCACAAATATATAATGCATCAACAA 57.859 29.630 0.00 0.00 0.00 2.83
538 565 8.703378 TCCCACAAATATATAATGCATCAACA 57.297 30.769 0.00 0.00 0.00 3.33
539 566 7.756722 GCTCCCACAAATATATAATGCATCAAC 59.243 37.037 0.00 0.00 0.00 3.18
540 567 7.670979 AGCTCCCACAAATATATAATGCATCAA 59.329 33.333 0.00 0.00 0.00 2.57
541 568 7.177184 AGCTCCCACAAATATATAATGCATCA 58.823 34.615 0.00 0.00 0.00 3.07
542 569 7.636150 AGCTCCCACAAATATATAATGCATC 57.364 36.000 0.00 0.00 0.00 3.91
543 570 9.182214 CTAAGCTCCCACAAATATATAATGCAT 57.818 33.333 0.00 0.00 0.00 3.96
544 571 8.382405 TCTAAGCTCCCACAAATATATAATGCA 58.618 33.333 0.00 0.00 0.00 3.96
545 572 8.792830 TCTAAGCTCCCACAAATATATAATGC 57.207 34.615 0.00 0.00 0.00 3.56
548 575 9.725019 CACATCTAAGCTCCCACAAATATATAA 57.275 33.333 0.00 0.00 0.00 0.98
549 576 9.100197 TCACATCTAAGCTCCCACAAATATATA 57.900 33.333 0.00 0.00 0.00 0.86
550 577 7.880195 GTCACATCTAAGCTCCCACAAATATAT 59.120 37.037 0.00 0.00 0.00 0.86
551 578 7.147567 TGTCACATCTAAGCTCCCACAAATATA 60.148 37.037 0.00 0.00 0.00 0.86
552 579 6.058183 GTCACATCTAAGCTCCCACAAATAT 58.942 40.000 0.00 0.00 0.00 1.28
553 580 5.045942 TGTCACATCTAAGCTCCCACAAATA 60.046 40.000 0.00 0.00 0.00 1.40
554 581 4.263462 TGTCACATCTAAGCTCCCACAAAT 60.263 41.667 0.00 0.00 0.00 2.32
555 582 3.072330 TGTCACATCTAAGCTCCCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
556 583 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
557 584 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
558 585 3.550437 ATGTCACATCTAAGCTCCCAC 57.450 47.619 0.00 0.00 0.00 4.61
559 586 4.290093 AGTATGTCACATCTAAGCTCCCA 58.710 43.478 0.00 0.00 0.00 4.37
560 587 4.946478 AGTATGTCACATCTAAGCTCCC 57.054 45.455 0.00 0.00 0.00 4.30
561 588 8.718102 TTTTAAGTATGTCACATCTAAGCTCC 57.282 34.615 0.00 0.00 0.00 4.70
591 618 9.645059 CTTCAGTTTGTCTAATTCACATCTAGA 57.355 33.333 0.00 0.00 0.00 2.43
592 619 9.645059 TCTTCAGTTTGTCTAATTCACATCTAG 57.355 33.333 0.00 0.00 0.00 2.43
593 620 9.996554 TTCTTCAGTTTGTCTAATTCACATCTA 57.003 29.630 0.00 0.00 0.00 1.98
594 621 8.908786 TTCTTCAGTTTGTCTAATTCACATCT 57.091 30.769 0.00 0.00 0.00 2.90
604 631 9.403583 ACCAGTAAAAATTCTTCAGTTTGTCTA 57.596 29.630 0.00 0.00 0.00 2.59
605 632 8.293699 ACCAGTAAAAATTCTTCAGTTTGTCT 57.706 30.769 0.00 0.00 0.00 3.41
606 633 8.926715 AACCAGTAAAAATTCTTCAGTTTGTC 57.073 30.769 0.00 0.00 0.00 3.18
607 634 7.700656 CGAACCAGTAAAAATTCTTCAGTTTGT 59.299 33.333 0.00 0.00 0.00 2.83
608 635 7.305993 GCGAACCAGTAAAAATTCTTCAGTTTG 60.306 37.037 0.00 0.00 0.00 2.93
609 636 6.695713 GCGAACCAGTAAAAATTCTTCAGTTT 59.304 34.615 0.00 0.00 0.00 2.66
610 637 6.206498 GCGAACCAGTAAAAATTCTTCAGTT 58.794 36.000 0.00 0.00 0.00 3.16
611 638 5.278315 GGCGAACCAGTAAAAATTCTTCAGT 60.278 40.000 0.00 0.00 35.26 3.41
612 639 5.154222 GGCGAACCAGTAAAAATTCTTCAG 58.846 41.667 0.00 0.00 35.26 3.02
613 640 4.319911 CGGCGAACCAGTAAAAATTCTTCA 60.320 41.667 0.00 0.00 34.57 3.02
614 641 4.083696 TCGGCGAACCAGTAAAAATTCTTC 60.084 41.667 7.35 0.00 34.57 2.87
615 642 3.816523 TCGGCGAACCAGTAAAAATTCTT 59.183 39.130 7.35 0.00 34.57 2.52
616 643 3.404899 TCGGCGAACCAGTAAAAATTCT 58.595 40.909 7.35 0.00 34.57 2.40
617 644 3.817148 TCGGCGAACCAGTAAAAATTC 57.183 42.857 7.35 0.00 34.57 2.17
618 645 3.607542 CGTTCGGCGAACCAGTAAAAATT 60.608 43.478 37.91 0.00 44.77 1.82
619 646 2.096119 CGTTCGGCGAACCAGTAAAAAT 60.096 45.455 37.91 0.00 44.77 1.82
620 647 1.261089 CGTTCGGCGAACCAGTAAAAA 59.739 47.619 37.91 6.84 44.77 1.94
621 648 0.860533 CGTTCGGCGAACCAGTAAAA 59.139 50.000 37.91 7.62 44.77 1.52
622 649 0.945265 CCGTTCGGCGAACCAGTAAA 60.945 55.000 37.91 8.39 44.77 2.01
623 650 1.373246 CCGTTCGGCGAACCAGTAA 60.373 57.895 37.91 9.18 44.77 2.24
624 651 2.259204 CCGTTCGGCGAACCAGTA 59.741 61.111 37.91 9.96 44.77 2.74
625 652 3.920196 ACCGTTCGGCGAACCAGT 61.920 61.111 37.91 32.41 44.77 4.00
626 653 3.411351 CACCGTTCGGCGAACCAG 61.411 66.667 37.91 31.84 44.77 4.00
627 654 4.973055 CCACCGTTCGGCGAACCA 62.973 66.667 37.91 11.54 44.77 3.67
628 655 4.668118 TCCACCGTTCGGCGAACC 62.668 66.667 37.91 24.08 44.77 3.62
629 656 2.476534 TACTCCACCGTTCGGCGAAC 62.477 60.000 35.86 35.86 44.77 3.95
630 657 1.804396 TTACTCCACCGTTCGGCGAA 61.804 55.000 19.83 19.83 44.77 4.70
631 658 1.804396 TTTACTCCACCGTTCGGCGA 61.804 55.000 4.99 4.99 44.77 5.54
635 662 3.001939 GCCAATATTTACTCCACCGTTCG 59.998 47.826 0.00 0.00 0.00 3.95
638 665 2.557317 CGCCAATATTTACTCCACCGT 58.443 47.619 0.00 0.00 0.00 4.83
669 697 2.649531 TCCCAATAGCCAATAACGGG 57.350 50.000 0.00 0.00 32.45 5.28
671 699 4.062293 TCGAATCCCAATAGCCAATAACG 58.938 43.478 0.00 0.00 0.00 3.18
673 701 7.685481 TCTAATCGAATCCCAATAGCCAATAA 58.315 34.615 0.00 0.00 0.00 1.40
674 702 7.252612 TCTAATCGAATCCCAATAGCCAATA 57.747 36.000 0.00 0.00 0.00 1.90
675 703 6.126863 TCTAATCGAATCCCAATAGCCAAT 57.873 37.500 0.00 0.00 0.00 3.16
676 704 5.560722 TCTAATCGAATCCCAATAGCCAA 57.439 39.130 0.00 0.00 0.00 4.52
678 706 4.333926 GCATCTAATCGAATCCCAATAGCC 59.666 45.833 0.00 0.00 0.00 3.93
679 707 4.033358 CGCATCTAATCGAATCCCAATAGC 59.967 45.833 0.00 0.00 0.00 2.97
680 708 4.033358 GCGCATCTAATCGAATCCCAATAG 59.967 45.833 0.30 0.00 0.00 1.73
688 736 5.591643 AAAATACGCGCATCTAATCGAAT 57.408 34.783 5.73 0.00 0.00 3.34
689 737 5.398176 AAAAATACGCGCATCTAATCGAA 57.602 34.783 5.73 0.00 0.00 3.71
693 741 7.438459 AGAGAAGTAAAAATACGCGCATCTAAT 59.562 33.333 5.73 0.00 0.00 1.73
706 754 7.985752 CCTATCCGGTGTTAGAGAAGTAAAAAT 59.014 37.037 0.00 0.00 0.00 1.82
707 755 7.325694 CCTATCCGGTGTTAGAGAAGTAAAAA 58.674 38.462 0.00 0.00 0.00 1.94
708 756 6.127253 CCCTATCCGGTGTTAGAGAAGTAAAA 60.127 42.308 0.00 0.00 0.00 1.52
709 757 5.361857 CCCTATCCGGTGTTAGAGAAGTAAA 59.638 44.000 0.00 0.00 0.00 2.01
710 758 4.891756 CCCTATCCGGTGTTAGAGAAGTAA 59.108 45.833 0.00 0.00 0.00 2.24
711 759 4.079558 ACCCTATCCGGTGTTAGAGAAGTA 60.080 45.833 0.00 0.00 33.77 2.24
713 761 3.297736 ACCCTATCCGGTGTTAGAGAAG 58.702 50.000 0.00 0.00 33.77 2.85
717 772 1.683943 CGACCCTATCCGGTGTTAGA 58.316 55.000 0.00 0.00 35.79 2.10
795 868 9.849166 GAAAGAGATAGAAAAGGATACGGATAG 57.151 37.037 0.00 0.00 46.39 2.08
869 946 3.703556 TGGCATCAGGTTGAAAGTTTTCA 59.296 39.130 3.28 3.28 44.78 2.69
915 992 1.258445 CGGATATTCCTCCTCGGGGG 61.258 65.000 0.00 0.00 33.30 5.40
1260 1381 3.966930 GAGCCAGAGGACGAGGGGT 62.967 68.421 0.00 0.00 0.00 4.95
1313 1434 4.947388 TCATTTATTTTGGAACGGAGGGAG 59.053 41.667 0.00 0.00 0.00 4.30
1314 1435 4.703093 GTCATTTATTTTGGAACGGAGGGA 59.297 41.667 0.00 0.00 0.00 4.20
1315 1436 4.705023 AGTCATTTATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
1316 1437 5.414454 TGAGTCATTTATTTTGGAACGGAGG 59.586 40.000 0.00 0.00 0.00 4.30
1317 1438 6.494893 TGAGTCATTTATTTTGGAACGGAG 57.505 37.500 0.00 0.00 0.00 4.63
1318 1439 6.885952 TTGAGTCATTTATTTTGGAACGGA 57.114 33.333 0.00 0.00 0.00 4.69
1319 1440 8.532977 AAATTGAGTCATTTATTTTGGAACGG 57.467 30.769 0.00 0.00 0.00 4.44
1320 1441 9.796062 CAAAATTGAGTCATTTATTTTGGAACG 57.204 29.630 22.69 7.18 41.13 3.95
1358 1479 9.739276 TCTAAAATGGATGAGTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
1359 1480 9.567776 TTCTAAAATGGATGAGTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1360 1481 8.352942 GTTCTAAAATGGATGAGTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1361 1482 8.352201 TGTTCTAAAATGGATGAGTCAACTTTG 58.648 33.333 0.00 0.00 0.00 2.77
1362 1483 8.463930 TGTTCTAAAATGGATGAGTCAACTTT 57.536 30.769 0.00 0.00 0.00 2.66
1364 1485 8.463930 TTTGTTCTAAAATGGATGAGTCAACT 57.536 30.769 0.00 0.00 0.00 3.16
1369 1490 6.552008 TCCCTTTGTTCTAAAATGGATGAGT 58.448 36.000 0.00 0.00 31.34 3.41
1380 1501 4.250464 CGCATGTACTCCCTTTGTTCTAA 58.750 43.478 0.00 0.00 0.00 2.10
1381 1502 3.259876 ACGCATGTACTCCCTTTGTTCTA 59.740 43.478 0.00 0.00 0.00 2.10
1383 1504 2.423577 ACGCATGTACTCCCTTTGTTC 58.576 47.619 0.00 0.00 0.00 3.18
1384 1505 2.552315 CAACGCATGTACTCCCTTTGTT 59.448 45.455 0.00 0.00 0.00 2.83
1385 1506 2.151202 CAACGCATGTACTCCCTTTGT 58.849 47.619 0.00 0.00 0.00 2.83
1386 1507 1.468520 CCAACGCATGTACTCCCTTTG 59.531 52.381 0.00 0.00 0.00 2.77
1387 1508 1.349688 TCCAACGCATGTACTCCCTTT 59.650 47.619 0.00 0.00 0.00 3.11
1388 1509 0.981183 TCCAACGCATGTACTCCCTT 59.019 50.000 0.00 0.00 0.00 3.95
1389 1510 0.249398 GTCCAACGCATGTACTCCCT 59.751 55.000 0.00 0.00 0.00 4.20
1390 1511 0.036765 TGTCCAACGCATGTACTCCC 60.037 55.000 0.00 0.00 0.00 4.30
1391 1512 1.076332 GTGTCCAACGCATGTACTCC 58.924 55.000 0.00 0.00 0.00 3.85
1392 1513 0.713883 CGTGTCCAACGCATGTACTC 59.286 55.000 0.00 0.00 46.99 2.59
1393 1514 2.822306 CGTGTCCAACGCATGTACT 58.178 52.632 0.00 0.00 46.99 2.73
1421 1542 8.813951 AGTACTGCCCAAATAATATAGGAGTAC 58.186 37.037 10.48 10.48 34.70 2.73
1424 1545 7.106239 CCAGTACTGCCCAAATAATATAGGAG 58.894 42.308 17.86 0.00 0.00 3.69
1425 1546 6.012858 CCCAGTACTGCCCAAATAATATAGGA 60.013 42.308 17.86 0.00 0.00 2.94
1426 1547 6.180472 CCCAGTACTGCCCAAATAATATAGG 58.820 44.000 17.86 4.13 0.00 2.57
1427 1548 5.648092 GCCCAGTACTGCCCAAATAATATAG 59.352 44.000 17.86 0.00 0.00 1.31
1428 1549 5.566469 GCCCAGTACTGCCCAAATAATATA 58.434 41.667 17.86 0.00 0.00 0.86
1429 1550 4.407365 GCCCAGTACTGCCCAAATAATAT 58.593 43.478 17.86 0.00 0.00 1.28
1430 1551 3.746114 CGCCCAGTACTGCCCAAATAATA 60.746 47.826 17.86 0.00 0.00 0.98
1431 1552 2.666317 GCCCAGTACTGCCCAAATAAT 58.334 47.619 17.86 0.00 0.00 1.28
1432 1553 1.680555 CGCCCAGTACTGCCCAAATAA 60.681 52.381 17.86 0.00 0.00 1.40
1433 1554 0.107410 CGCCCAGTACTGCCCAAATA 60.107 55.000 17.86 0.00 0.00 1.40
1536 1657 1.902508 AGCGGAAGGAAGAAGATGACA 59.097 47.619 0.00 0.00 0.00 3.58
1570 1691 1.351683 GTAGAGGATAGGAGGAGGCGA 59.648 57.143 0.00 0.00 0.00 5.54
1582 1703 1.799933 CAAGCAGGAGGGTAGAGGAT 58.200 55.000 0.00 0.00 0.00 3.24
1586 1707 2.290847 CTGCAAGCAGGAGGGTAGA 58.709 57.895 14.10 0.00 40.17 2.59
1763 1889 2.459969 TTGCAACAGAGGGGGCTGA 61.460 57.895 0.00 0.00 39.20 4.26
1806 1932 0.322322 AAACCATTAGCGACGGGACA 59.678 50.000 0.00 0.00 0.00 4.02
1807 1933 1.395954 GAAAACCATTAGCGACGGGAC 59.604 52.381 0.00 0.00 0.00 4.46
1817 1961 1.587933 GCCCACGCCGAAAACCATTA 61.588 55.000 0.00 0.00 0.00 1.90
1851 2164 4.339872 TTTTGCTACAACCCGTCTTCTA 57.660 40.909 0.00 0.00 0.00 2.10
2044 2361 1.423161 TCAATGGTGACCATGGTGACA 59.577 47.619 31.64 22.21 44.40 3.58
2153 2471 1.157870 ACCGTGTTTGCTGGAAGTCG 61.158 55.000 0.00 0.00 35.30 4.18
2456 2775 2.027745 TGATGCTCTCGCTCCTCTTTTT 60.028 45.455 0.00 0.00 36.97 1.94
2502 2830 2.777692 TCCACATATCCTGTCCCCTTTC 59.222 50.000 0.00 0.00 35.29 2.62
2542 2870 5.010933 TCTTCTTATCCTCTGTTCGTGAGT 58.989 41.667 0.00 0.00 0.00 3.41
2549 2877 5.412904 CCGCTTTTTCTTCTTATCCTCTGTT 59.587 40.000 0.00 0.00 0.00 3.16
2621 2950 1.332686 TCGCTAATATCACGTGTCGCT 59.667 47.619 16.51 1.92 0.00 4.93
2627 2956 0.949397 TCCGCTCGCTAATATCACGT 59.051 50.000 0.00 0.00 0.00 4.49
2719 3048 8.189460 GCATGCAAAGTAAGTAGTAGTAGTAGT 58.811 37.037 14.21 0.00 0.00 2.73
2720 3049 8.188799 TGCATGCAAAGTAAGTAGTAGTAGTAG 58.811 37.037 20.30 0.00 0.00 2.57
2721 3050 8.058667 TGCATGCAAAGTAAGTAGTAGTAGTA 57.941 34.615 20.30 0.00 0.00 1.82
2722 3051 6.931838 TGCATGCAAAGTAAGTAGTAGTAGT 58.068 36.000 20.30 0.00 0.00 2.73
2723 3052 7.845483 CATGCATGCAAAGTAAGTAGTAGTAG 58.155 38.462 26.68 0.00 0.00 2.57
2724 3053 7.770801 CATGCATGCAAAGTAAGTAGTAGTA 57.229 36.000 26.68 0.00 0.00 1.82
2725 3054 6.668541 CATGCATGCAAAGTAAGTAGTAGT 57.331 37.500 26.68 0.00 0.00 2.73
2808 3137 1.570979 GGGGTTCCCTTCTGGATCAAT 59.429 52.381 7.87 0.00 44.66 2.57
2903 3263 3.721087 ACCAAACACCTCCTAAGATGG 57.279 47.619 0.00 0.00 0.00 3.51
2907 3269 3.121738 ACGAACCAAACACCTCCTAAG 57.878 47.619 0.00 0.00 0.00 2.18
2908 3270 3.564053 AACGAACCAAACACCTCCTAA 57.436 42.857 0.00 0.00 0.00 2.69
2909 3271 3.642848 AGTAACGAACCAAACACCTCCTA 59.357 43.478 0.00 0.00 0.00 2.94
3053 3415 2.874457 GCGGTTTCAGATTACACAGGGT 60.874 50.000 0.00 0.00 0.00 4.34
3966 4365 0.108804 GGTCGTCGCCAAATCTCTCA 60.109 55.000 1.46 0.00 0.00 3.27
4191 4636 5.122396 GGTGCCATAATCACGAGATTAATCC 59.878 44.000 17.37 11.82 46.62 3.01
4597 5057 3.506743 TTGCTGGGGTTCTGGCCA 61.507 61.111 4.71 4.71 0.00 5.36
4745 5214 2.107141 GTCGGATTGAGCGGAGGG 59.893 66.667 0.00 0.00 0.00 4.30
4950 5443 1.078918 CTCTTGATCACCGGCAGCA 60.079 57.895 0.00 0.00 0.00 4.41
5135 5628 2.342648 GACGAAGGTGAGGCCGTT 59.657 61.111 0.00 0.00 43.70 4.44
5265 5758 5.687285 ACGAAGCACTAATTTTTCAAGCTTG 59.313 36.000 20.81 20.81 40.52 4.01
5408 5930 9.121517 GCACTTTAGATAAGATACGCGTAATTA 57.878 33.333 24.55 22.97 0.00 1.40
5409 5931 7.115947 GGCACTTTAGATAAGATACGCGTAATT 59.884 37.037 24.55 21.64 0.00 1.40
5410 5932 6.585322 GGCACTTTAGATAAGATACGCGTAAT 59.415 38.462 24.55 12.17 0.00 1.89
5411 5933 5.916883 GGCACTTTAGATAAGATACGCGTAA 59.083 40.000 24.55 6.99 0.00 3.18
5412 5934 5.455392 GGCACTTTAGATAAGATACGCGTA 58.545 41.667 22.94 22.94 0.00 4.42
5413 5935 4.296690 GGCACTTTAGATAAGATACGCGT 58.703 43.478 19.17 19.17 0.00 6.01
5414 5936 3.361053 CGGCACTTTAGATAAGATACGCG 59.639 47.826 3.53 3.53 0.00 6.01
5415 5937 4.543692 TCGGCACTTTAGATAAGATACGC 58.456 43.478 0.00 0.00 0.00 4.42
5416 5938 5.759963 ACTCGGCACTTTAGATAAGATACG 58.240 41.667 0.00 0.00 0.00 3.06
5417 5939 9.694137 AAATACTCGGCACTTTAGATAAGATAC 57.306 33.333 0.00 0.00 0.00 2.24
5453 6001 7.361201 TTGATAAGTTCAGTTCTGCACTATTGC 60.361 37.037 5.65 0.00 41.70 3.56
5454 6002 7.601073 TGATAAGTTCAGTTCTGCACTATTG 57.399 36.000 5.65 0.00 32.76 1.90
5455 6003 8.621532 TTTGATAAGTTCAGTTCTGCACTATT 57.378 30.769 5.65 0.00 35.27 1.73
5456 6004 8.621532 TTTTGATAAGTTCAGTTCTGCACTAT 57.378 30.769 5.65 1.59 35.27 2.12
5457 6005 8.506437 CATTTTGATAAGTTCAGTTCTGCACTA 58.494 33.333 5.65 0.00 35.27 2.74
5458 6006 6.942532 TTTTGATAAGTTCAGTTCTGCACT 57.057 33.333 0.00 0.00 35.27 4.40
5459 6007 7.362662 TCATTTTGATAAGTTCAGTTCTGCAC 58.637 34.615 0.00 0.00 35.27 4.57
5460 6008 7.308770 CCTCATTTTGATAAGTTCAGTTCTGCA 60.309 37.037 0.00 0.00 35.27 4.41
5461 6009 7.025963 CCTCATTTTGATAAGTTCAGTTCTGC 58.974 38.462 0.00 0.00 35.27 4.26
5462 6010 8.103948 ACCTCATTTTGATAAGTTCAGTTCTG 57.896 34.615 0.00 0.00 35.27 3.02
5463 6011 9.220767 GTACCTCATTTTGATAAGTTCAGTTCT 57.779 33.333 0.00 0.00 35.27 3.01
5464 6012 8.169268 CGTACCTCATTTTGATAAGTTCAGTTC 58.831 37.037 0.00 0.00 35.27 3.01
5465 6013 7.360946 GCGTACCTCATTTTGATAAGTTCAGTT 60.361 37.037 0.00 0.00 35.27 3.16
5466 6014 6.092259 GCGTACCTCATTTTGATAAGTTCAGT 59.908 38.462 0.00 0.00 35.27 3.41
5467 6015 6.092122 TGCGTACCTCATTTTGATAAGTTCAG 59.908 38.462 0.00 0.00 35.27 3.02
5468 6016 5.935206 TGCGTACCTCATTTTGATAAGTTCA 59.065 36.000 0.00 0.00 0.00 3.18
5469 6017 6.417191 TGCGTACCTCATTTTGATAAGTTC 57.583 37.500 0.00 0.00 0.00 3.01
5470 6018 6.823689 AGATGCGTACCTCATTTTGATAAGTT 59.176 34.615 0.00 0.00 0.00 2.66
5471 6019 6.349300 AGATGCGTACCTCATTTTGATAAGT 58.651 36.000 0.00 0.00 0.00 2.24
5472 6020 6.851222 AGATGCGTACCTCATTTTGATAAG 57.149 37.500 0.00 0.00 0.00 1.73
5473 6021 8.902540 ATTAGATGCGTACCTCATTTTGATAA 57.097 30.769 0.00 0.00 0.00 1.75
5474 6022 8.902540 AATTAGATGCGTACCTCATTTTGATA 57.097 30.769 0.00 0.00 0.00 2.15
5566 6121 2.667724 GCAACAGCTGAGTTCAATCTGC 60.668 50.000 23.35 10.13 42.58 4.26
5572 6127 0.463654 AACCGCAACAGCTGAGTTCA 60.464 50.000 23.35 0.00 0.00 3.18
5576 6131 2.620112 CCCAACCGCAACAGCTGAG 61.620 63.158 23.35 13.61 0.00 3.35
5595 6150 3.548818 GGCATCATAGCGAAAACCATGAC 60.549 47.826 0.00 0.00 34.64 3.06
5624 6179 3.244044 GGTTGGGCTAGAGATGCTCTTAG 60.244 52.174 1.88 0.64 41.50 2.18
5642 6197 8.179615 ACTTGAGTTAAGACTTTTTAACGGTTG 58.820 33.333 3.07 0.00 44.40 3.77
5649 6204 9.457436 AGGTTCAACTTGAGTTAAGACTTTTTA 57.543 29.630 0.99 0.00 39.76 1.52
5668 6375 4.417437 AGTAGGAGTTCAGCTAGGTTCAA 58.583 43.478 0.00 0.00 0.00 2.69
5721 6428 4.388499 GGAAGCGCCGGTGAAGGA 62.388 66.667 21.76 0.00 0.00 3.36
5733 6440 1.421485 CGTTGAGCGATGTGGAAGC 59.579 57.895 0.00 0.00 44.77 3.86
5756 6480 4.832608 GCGGGGTTGCCTAGGTCG 62.833 72.222 11.31 6.54 0.00 4.79
5783 6507 0.394565 GAGCGAATCTACCATGGCCT 59.605 55.000 13.04 0.00 0.00 5.19
5786 6510 0.946221 GGCGAGCGAATCTACCATGG 60.946 60.000 11.19 11.19 0.00 3.66
5787 6511 0.249447 TGGCGAGCGAATCTACCATG 60.249 55.000 0.00 0.00 29.45 3.66
5806 6530 3.990092 TGATTCGAACTGTAGTGCTGTT 58.010 40.909 0.00 3.20 41.08 3.16
5810 6534 2.866762 GGGATGATTCGAACTGTAGTGC 59.133 50.000 0.00 0.00 0.00 4.40
5812 6536 6.495181 AGATATGGGATGATTCGAACTGTAGT 59.505 38.462 0.00 0.00 0.00 2.73
5815 6539 5.815233 AGATATGGGATGATTCGAACTGT 57.185 39.130 0.00 0.00 0.00 3.55
5819 6543 4.019321 GGGGAAGATATGGGATGATTCGAA 60.019 45.833 0.00 0.00 0.00 3.71
5821 6545 3.679917 CGGGGAAGATATGGGATGATTCG 60.680 52.174 0.00 0.00 0.00 3.34
5825 6549 2.257207 GACGGGGAAGATATGGGATGA 58.743 52.381 0.00 0.00 0.00 2.92
5865 6589 1.152860 TCAGCGGTGGCCTTTTTCA 60.153 52.632 15.67 0.00 41.24 2.69
5868 6592 2.983725 AAGCTCAGCGGTGGCCTTTT 62.984 55.000 15.67 5.19 41.24 2.27
5869 6593 3.497884 AAGCTCAGCGGTGGCCTTT 62.498 57.895 15.67 5.86 41.24 3.11
5870 6594 3.958860 AAGCTCAGCGGTGGCCTT 61.959 61.111 15.67 13.86 41.24 4.35
5871 6595 4.711949 CAAGCTCAGCGGTGGCCT 62.712 66.667 15.67 8.38 41.24 5.19
5874 6598 1.856265 GAAACCAAGCTCAGCGGTGG 61.856 60.000 18.26 18.26 41.89 4.61
5887 6611 5.536916 ACCGGTTCTATTTTTGATGAAACCA 59.463 36.000 0.00 0.00 0.00 3.67
5894 6618 3.687698 CGTCCACCGGTTCTATTTTTGAT 59.312 43.478 2.97 0.00 0.00 2.57
5897 6621 3.069289 GTCGTCCACCGGTTCTATTTTT 58.931 45.455 2.97 0.00 37.11 1.94
5902 6626 3.685435 GGTCGTCCACCGGTTCTA 58.315 61.111 2.97 0.00 34.56 2.10
5922 6646 0.107897 TAATGGTGCTCGGCGACATT 60.108 50.000 21.74 21.74 39.47 2.71
5923 6647 0.106708 ATAATGGTGCTCGGCGACAT 59.893 50.000 4.99 5.03 0.00 3.06
5926 6650 1.227527 CCATAATGGTGCTCGGCGA 60.228 57.895 10.14 10.14 31.35 5.54
5927 6651 2.896801 GCCATAATGGTGCTCGGCG 61.897 63.158 0.00 0.00 40.46 6.46
5928 6652 2.555547 GGCCATAATGGTGCTCGGC 61.556 63.158 0.00 0.00 40.46 5.54
5929 6653 1.152984 TGGCCATAATGGTGCTCGG 60.153 57.895 0.00 0.00 40.46 4.63
5931 6655 0.740737 GTGTGGCCATAATGGTGCTC 59.259 55.000 9.72 0.00 40.46 4.26
5932 6656 0.332632 AGTGTGGCCATAATGGTGCT 59.667 50.000 9.72 0.00 40.46 4.40
5934 6658 2.945008 CACTAGTGTGGCCATAATGGTG 59.055 50.000 26.60 26.60 40.33 4.17
5935 6659 3.281727 CACTAGTGTGGCCATAATGGT 57.718 47.619 13.02 13.02 40.33 3.55
5944 6668 7.312756 CGTTTTCGAAATAACACTAGTGTGGC 61.313 42.308 28.55 14.62 46.22 5.01
5945 6669 6.068931 CGTTTTCGAAATAACACTAGTGTGG 58.931 40.000 28.55 13.56 46.22 4.17
5946 6670 6.068931 CCGTTTTCGAAATAACACTAGTGTG 58.931 40.000 28.55 14.97 46.81 3.82
5969 6711 3.550656 CGACGCAGTTGAACTCCC 58.449 61.111 0.00 0.00 47.00 4.30
5980 6722 3.052620 GCTGACTAGGCTCGACGCA 62.053 63.158 0.00 0.00 41.67 5.24
5981 6723 2.278271 GCTGACTAGGCTCGACGC 60.278 66.667 0.00 0.00 38.13 5.19
5982 6724 1.777030 ATCGCTGACTAGGCTCGACG 61.777 60.000 14.13 4.98 31.74 5.12
5984 6726 0.463833 TGATCGCTGACTAGGCTCGA 60.464 55.000 14.19 14.19 0.00 4.04
5985 6727 0.317436 GTGATCGCTGACTAGGCTCG 60.317 60.000 0.00 0.22 0.00 5.03
5997 6739 1.738099 AAGTGGTGCTCGTGATCGC 60.738 57.895 0.00 0.00 36.96 4.58
5998 6740 1.354337 CCAAGTGGTGCTCGTGATCG 61.354 60.000 0.00 0.00 38.55 3.69
5999 6741 0.037326 TCCAAGTGGTGCTCGTGATC 60.037 55.000 0.00 0.00 36.34 2.92
6004 6746 1.079543 CTCCTCCAAGTGGTGCTCG 60.080 63.158 0.00 0.00 36.34 5.03
6039 6781 1.227943 TGTGGAGTGACCTGCAAGC 60.228 57.895 0.00 0.00 41.04 4.01
6048 6790 3.640407 GGCTGGGCTGTGGAGTGA 61.640 66.667 0.00 0.00 0.00 3.41
6077 6819 2.283529 ATTGAGGTGACGCCGAGGT 61.284 57.895 0.00 0.00 43.70 3.85
6088 6830 1.079819 CTGCCGACGACATTGAGGT 60.080 57.895 0.00 0.00 0.00 3.85
6098 6840 3.443925 TGAGAGCCTCTGCCGACG 61.444 66.667 0.00 0.00 38.69 5.12
6128 6870 5.008619 TGTGCAATTCATGAACACTTTGT 57.991 34.783 21.48 0.39 42.98 2.83
6136 6878 9.142515 GAAAATCTTACATGTGCAATTCATGAA 57.857 29.630 19.39 11.26 43.47 2.57
6145 6888 6.028146 AGCAATGAAAATCTTACATGTGCA 57.972 33.333 9.11 0.00 34.25 4.57
6146 6889 6.956299 AAGCAATGAAAATCTTACATGTGC 57.044 33.333 9.11 0.00 33.22 4.57
6174 6917 7.763172 TTGCAAAACTAGTAAAACACAATGG 57.237 32.000 0.00 0.00 0.00 3.16
6175 6918 9.029243 TGATTGCAAAACTAGTAAAACACAATG 57.971 29.630 1.71 0.00 0.00 2.82
6217 6960 6.299805 ACCTCTTCATCTACACTATGCAAA 57.700 37.500 0.00 0.00 0.00 3.68
6225 6968 5.657302 TCTCCCTTAACCTCTTCATCTACAC 59.343 44.000 0.00 0.00 0.00 2.90
6233 6976 5.685520 AGAACATCTCCCTTAACCTCTTC 57.314 43.478 0.00 0.00 0.00 2.87
6258 7001 3.695060 TCCTCCACGTATCAAGAGTCTTC 59.305 47.826 1.26 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.