Multiple sequence alignment - TraesCS3B01G197900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G197900 chr3B 100.000 2103 0 0 1 2103 225259102 225257000 0.000000e+00 3884.0
1 TraesCS3B01G197900 chr3B 100.000 231 0 0 2345 2575 225256758 225256528 6.580000e-116 427.0
2 TraesCS3B01G197900 chr3B 97.500 120 3 0 69 188 225258918 225258799 3.360000e-49 206.0
3 TraesCS3B01G197900 chr3B 97.500 120 3 0 185 304 225259034 225258915 3.360000e-49 206.0
4 TraesCS3B01G197900 chr3B 83.133 83 14 0 1 83 188519804 188519886 2.750000e-10 76.8
5 TraesCS3B01G197900 chr3B 83.133 83 14 0 1 83 188520996 188521078 2.750000e-10 76.8
6 TraesCS3B01G197900 chr7A 84.725 982 87 26 788 1736 581344552 581345503 0.000000e+00 924.0
7 TraesCS3B01G197900 chr7A 88.780 205 19 3 1896 2097 581345503 581345706 5.500000e-62 248.0
8 TraesCS3B01G197900 chr7A 82.902 193 16 11 343 524 581342885 581343071 9.540000e-35 158.0
9 TraesCS3B01G197900 chr7A 83.529 85 14 0 7 91 42016657 42016573 2.120000e-11 80.5
10 TraesCS3B01G197900 chr7A 83.133 83 14 0 1 83 64465404 64465486 2.750000e-10 76.8
11 TraesCS3B01G197900 chr7A 83.544 79 13 0 7 85 645114438 645114360 9.880000e-10 75.0
12 TraesCS3B01G197900 chr7A 83.544 79 13 0 7 85 645128459 645128381 9.880000e-10 75.0
13 TraesCS3B01G197900 chr7B 83.192 1059 99 38 725 1736 538863828 538864854 0.000000e+00 896.0
14 TraesCS3B01G197900 chr7B 93.103 232 11 4 2345 2575 99794790 99795017 4.110000e-88 335.0
15 TraesCS3B01G197900 chr7B 93.103 232 11 4 2345 2575 125246842 125247069 4.110000e-88 335.0
16 TraesCS3B01G197900 chr7B 93.103 232 11 4 2345 2575 125282897 125283124 4.110000e-88 335.0
17 TraesCS3B01G197900 chr7B 93.103 232 11 4 2345 2575 125316778 125317005 4.110000e-88 335.0
18 TraesCS3B01G197900 chr7B 92.672 232 12 4 2345 2575 125223006 125223233 1.910000e-86 329.0
19 TraesCS3B01G197900 chr7B 89.216 204 20 1 1896 2097 538864851 538865054 1.180000e-63 254.0
20 TraesCS3B01G197900 chr7B 87.671 146 10 2 200 345 705331105 705330968 2.050000e-36 163.0
21 TraesCS3B01G197900 chr7B 82.723 191 17 9 343 524 538862430 538862613 3.430000e-34 156.0
22 TraesCS3B01G197900 chr7B 84.146 82 13 0 7 88 678542680 678542599 2.120000e-11 80.5
23 TraesCS3B01G197900 chr7D 83.694 1018 83 42 761 1720 510449870 510450862 0.000000e+00 883.0
24 TraesCS3B01G197900 chr7D 89.143 175 13 1 1928 2096 510450895 510451069 2.010000e-51 213.0
25 TraesCS3B01G197900 chr7D 86.429 140 7 5 390 521 510448956 510449091 2.670000e-30 143.0
26 TraesCS3B01G197900 chr3D 96.703 455 12 2 893 1344 156240854 156241308 0.000000e+00 754.0
27 TraesCS3B01G197900 chr3D 90.050 603 14 13 346 903 156238640 156239241 0.000000e+00 739.0
28 TraesCS3B01G197900 chr3D 98.744 398 5 0 1339 1736 156246450 156246847 0.000000e+00 708.0
29 TraesCS3B01G197900 chr3D 97.015 201 6 0 1896 2096 156246844 156247044 3.170000e-89 339.0
30 TraesCS3B01G197900 chr3D 94.706 170 8 1 1732 1901 536623229 536623397 1.960000e-66 263.0
31 TraesCS3B01G197900 chr3D 83.117 77 13 0 7 83 484936988 484936912 1.280000e-08 71.3
32 TraesCS3B01G197900 chrUn 93.103 232 11 4 2345 2575 332930335 332930562 4.110000e-88 335.0
33 TraesCS3B01G197900 chrUn 93.103 232 11 4 2345 2575 360479203 360478976 4.110000e-88 335.0
34 TraesCS3B01G197900 chrUn 94.152 171 7 3 1732 1901 317734261 317734429 9.140000e-65 257.0
35 TraesCS3B01G197900 chr3A 93.103 232 11 4 2345 2575 738331925 738332152 4.110000e-88 335.0
36 TraesCS3B01G197900 chr5B 92.241 232 13 3 2345 2575 35552932 35553159 8.890000e-85 324.0
37 TraesCS3B01G197900 chr5B 82.143 84 15 0 1 84 496271968 496272051 3.550000e-09 73.1
38 TraesCS3B01G197900 chr4D 92.896 183 10 3 1732 1912 316114791 316114610 1.960000e-66 263.0
39 TraesCS3B01G197900 chr4D 94.118 170 9 1 1732 1901 21101418 21101586 9.140000e-65 257.0
40 TraesCS3B01G197900 chr4D 94.118 170 9 1 1732 1901 25740230 25740398 9.140000e-65 257.0
41 TraesCS3B01G197900 chr6D 94.118 170 9 1 1732 1901 107019752 107019920 9.140000e-65 257.0
42 TraesCS3B01G197900 chr5D 92.350 183 11 3 1732 1912 343179039 343178858 9.140000e-65 257.0
43 TraesCS3B01G197900 chr6B 92.308 182 11 2 1716 1897 211161657 211161479 3.290000e-64 255.0
44 TraesCS3B01G197900 chr6B 85.714 147 13 3 200 345 149149972 149149833 5.740000e-32 148.0
45 TraesCS3B01G197900 chr2D 92.265 181 10 3 1734 1912 126241194 126241016 1.180000e-63 254.0
46 TraesCS3B01G197900 chr4B 94.521 146 6 1 200 345 671651599 671651742 9.270000e-55 224.0
47 TraesCS3B01G197900 chr4B 93.151 146 9 1 200 345 567410863 567411007 2.010000e-51 213.0
48 TraesCS3B01G197900 chr4B 93.333 105 6 1 84 188 567410863 567410966 1.230000e-33 154.0
49 TraesCS3B01G197900 chr4B 93.333 105 5 1 84 188 671651599 671651701 1.230000e-33 154.0
50 TraesCS3B01G197900 chr2B 93.836 146 8 1 200 345 728927670 728927526 4.310000e-53 219.0
51 TraesCS3B01G197900 chr1B 86.525 141 10 4 206 345 51587549 51587417 2.060000e-31 147.0
52 TraesCS3B01G197900 chr1D 86.667 105 12 1 84 188 449286954 449287056 5.820000e-22 115.0
53 TraesCS3B01G197900 chr1D 84.043 94 6 5 253 345 202944718 202944803 5.910000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G197900 chr3B 225256528 225259102 2574 True 1180.750000 3884 98.750000 1 2575 4 chr3B.!!$R1 2574
1 TraesCS3B01G197900 chr7A 581342885 581345706 2821 False 443.333333 924 85.469000 343 2097 3 chr7A.!!$F2 1754
2 TraesCS3B01G197900 chr7B 538862430 538865054 2624 False 435.333333 896 85.043667 343 2097 3 chr7B.!!$F6 1754
3 TraesCS3B01G197900 chr7D 510448956 510451069 2113 False 413.000000 883 86.422000 390 2096 3 chr7D.!!$F1 1706
4 TraesCS3B01G197900 chr3D 156238640 156241308 2668 False 746.500000 754 93.376500 346 1344 2 chr3D.!!$F2 998
5 TraesCS3B01G197900 chr3D 156246450 156247044 594 False 523.500000 708 97.879500 1339 2096 2 chr3D.!!$F3 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.034198 TCGAGTGGCCACAAAATCGA 59.966 50.000 32.28 32.28 36.56 3.59 F
299 300 1.086696 CGAGTGGCCACAAAATCGAT 58.913 50.000 36.39 14.43 33.62 3.59 F
305 306 1.135112 GGCCACAAAATCGATTGACCC 60.135 52.381 12.25 3.40 34.38 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1264 4387 0.905357 GGCTGTGGCTTCTCCTCTAA 59.095 55.000 0.00 0.0 38.73 2.10 R
1364 4506 1.597461 GAACCCTCCTTCCTCCACG 59.403 63.158 0.00 0.0 0.00 4.94 R
1774 4927 2.291465 TGCTTCGTACGTAGTCACTTGT 59.709 45.455 20.85 0.0 43.93 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.972227 CCCAGAGGTTGTTGCGAG 58.028 61.111 0.00 0.00 0.00 5.03
37 38 2.328099 CCCAGAGGTTGTTGCGAGC 61.328 63.158 0.00 0.00 0.00 5.03
38 39 2.671177 CCAGAGGTTGTTGCGAGCG 61.671 63.158 0.00 0.00 0.00 5.03
39 40 3.044305 AGAGGTTGTTGCGAGCGC 61.044 61.111 8.08 8.08 42.35 5.92
40 41 4.090057 GAGGTTGTTGCGAGCGCC 62.090 66.667 12.70 0.00 41.09 6.53
41 42 4.927782 AGGTTGTTGCGAGCGCCA 62.928 61.111 12.70 0.00 41.09 5.69
42 43 4.389576 GGTTGTTGCGAGCGCCAG 62.390 66.667 12.70 0.00 41.09 4.85
43 44 3.649986 GTTGTTGCGAGCGCCAGT 61.650 61.111 12.70 0.00 41.09 4.00
44 45 2.899838 TTGTTGCGAGCGCCAGTT 60.900 55.556 12.70 0.00 41.09 3.16
45 46 1.595655 TTGTTGCGAGCGCCAGTTA 60.596 52.632 12.70 0.00 41.09 2.24
46 47 1.837538 TTGTTGCGAGCGCCAGTTAC 61.838 55.000 12.70 0.00 41.09 2.50
47 48 3.109547 TTGCGAGCGCCAGTTACG 61.110 61.111 12.70 1.90 41.09 3.18
48 49 3.851845 TTGCGAGCGCCAGTTACGT 62.852 57.895 12.70 0.00 41.09 3.57
49 50 3.110178 GCGAGCGCCAGTTACGTT 61.110 61.111 2.29 0.00 34.56 3.99
50 51 2.769617 CGAGCGCCAGTTACGTTG 59.230 61.111 2.29 0.00 0.00 4.10
51 52 2.474712 GAGCGCCAGTTACGTTGC 59.525 61.111 2.29 0.00 0.00 4.17
55 56 4.439472 GCCAGTTACGTTGCGCGG 62.439 66.667 8.83 0.00 46.52 6.46
56 57 4.439472 CCAGTTACGTTGCGCGGC 62.439 66.667 8.83 0.00 46.52 6.53
57 58 4.770102 CAGTTACGTTGCGCGGCG 62.770 66.667 19.62 19.62 46.52 6.46
74 75 4.100981 GCTGAAGGCGCTGACTAG 57.899 61.111 7.64 0.92 0.00 2.57
75 76 1.520342 GCTGAAGGCGCTGACTAGG 60.520 63.158 7.64 0.00 0.00 3.02
76 77 1.949847 GCTGAAGGCGCTGACTAGGA 61.950 60.000 7.64 0.00 0.00 2.94
77 78 0.102120 CTGAAGGCGCTGACTAGGAG 59.898 60.000 7.64 0.00 0.00 3.69
78 79 1.227118 GAAGGCGCTGACTAGGAGC 60.227 63.158 7.64 6.05 0.00 4.70
79 80 1.671901 GAAGGCGCTGACTAGGAGCT 61.672 60.000 7.64 0.00 34.03 4.09
80 81 1.671901 AAGGCGCTGACTAGGAGCTC 61.672 60.000 7.64 4.71 34.03 4.09
81 82 2.415426 GCGCTGACTAGGAGCTCC 59.585 66.667 26.22 26.22 34.03 4.70
82 83 3.124686 CGCTGACTAGGAGCTCCC 58.875 66.667 29.54 14.36 36.42 4.30
83 84 2.494530 CGCTGACTAGGAGCTCCCC 61.495 68.421 29.54 15.99 36.42 4.81
84 85 1.381872 GCTGACTAGGAGCTCCCCA 60.382 63.158 29.54 19.45 36.42 4.96
85 86 0.978146 GCTGACTAGGAGCTCCCCAA 60.978 60.000 29.54 14.16 36.42 4.12
86 87 1.573108 CTGACTAGGAGCTCCCCAAA 58.427 55.000 29.54 11.56 36.42 3.28
87 88 1.208293 CTGACTAGGAGCTCCCCAAAC 59.792 57.143 29.54 16.74 36.42 2.93
88 89 0.175989 GACTAGGAGCTCCCCAAACG 59.824 60.000 29.54 13.18 36.42 3.60
89 90 0.252103 ACTAGGAGCTCCCCAAACGA 60.252 55.000 29.54 5.22 36.42 3.85
90 91 1.123928 CTAGGAGCTCCCCAAACGAT 58.876 55.000 29.54 10.66 36.42 3.73
91 92 1.486726 CTAGGAGCTCCCCAAACGATT 59.513 52.381 29.54 9.89 36.42 3.34
92 93 0.253327 AGGAGCTCCCCAAACGATTC 59.747 55.000 29.54 0.00 36.42 2.52
93 94 0.748367 GGAGCTCCCCAAACGATTCC 60.748 60.000 23.19 0.00 0.00 3.01
94 95 0.035439 GAGCTCCCCAAACGATTCCA 60.035 55.000 0.87 0.00 0.00 3.53
95 96 0.322546 AGCTCCCCAAACGATTCCAC 60.323 55.000 0.00 0.00 0.00 4.02
96 97 0.608035 GCTCCCCAAACGATTCCACA 60.608 55.000 0.00 0.00 0.00 4.17
97 98 1.165270 CTCCCCAAACGATTCCACAC 58.835 55.000 0.00 0.00 0.00 3.82
98 99 0.474614 TCCCCAAACGATTCCACACA 59.525 50.000 0.00 0.00 0.00 3.72
99 100 0.881118 CCCCAAACGATTCCACACAG 59.119 55.000 0.00 0.00 0.00 3.66
100 101 0.240945 CCCAAACGATTCCACACAGC 59.759 55.000 0.00 0.00 0.00 4.40
101 102 0.240945 CCAAACGATTCCACACAGCC 59.759 55.000 0.00 0.00 0.00 4.85
102 103 0.240945 CAAACGATTCCACACAGCCC 59.759 55.000 0.00 0.00 0.00 5.19
103 104 0.179004 AAACGATTCCACACAGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
104 105 0.179004 AACGATTCCACACAGCCCAA 60.179 50.000 0.00 0.00 0.00 4.12
105 106 0.889186 ACGATTCCACACAGCCCAAC 60.889 55.000 0.00 0.00 0.00 3.77
106 107 0.606401 CGATTCCACACAGCCCAACT 60.606 55.000 0.00 0.00 0.00 3.16
107 108 1.168714 GATTCCACACAGCCCAACTC 58.831 55.000 0.00 0.00 0.00 3.01
108 109 0.478072 ATTCCACACAGCCCAACTCA 59.522 50.000 0.00 0.00 0.00 3.41
109 110 0.465460 TTCCACACAGCCCAACTCAC 60.465 55.000 0.00 0.00 0.00 3.51
110 111 1.898574 CCACACAGCCCAACTCACC 60.899 63.158 0.00 0.00 0.00 4.02
111 112 1.898574 CACACAGCCCAACTCACCC 60.899 63.158 0.00 0.00 0.00 4.61
112 113 2.282462 CACAGCCCAACTCACCCC 60.282 66.667 0.00 0.00 0.00 4.95
113 114 3.580319 ACAGCCCAACTCACCCCC 61.580 66.667 0.00 0.00 0.00 5.40
114 115 3.579302 CAGCCCAACTCACCCCCA 61.579 66.667 0.00 0.00 0.00 4.96
115 116 2.780924 AGCCCAACTCACCCCCAA 60.781 61.111 0.00 0.00 0.00 4.12
116 117 2.200092 GCCCAACTCACCCCCAAA 59.800 61.111 0.00 0.00 0.00 3.28
117 118 1.458588 GCCCAACTCACCCCCAAAA 60.459 57.895 0.00 0.00 0.00 2.44
118 119 0.835971 GCCCAACTCACCCCCAAAAT 60.836 55.000 0.00 0.00 0.00 1.82
119 120 0.975887 CCCAACTCACCCCCAAAATG 59.024 55.000 0.00 0.00 0.00 2.32
120 121 1.482177 CCCAACTCACCCCCAAAATGA 60.482 52.381 0.00 0.00 0.00 2.57
121 122 1.618343 CCAACTCACCCCCAAAATGAC 59.382 52.381 0.00 0.00 0.00 3.06
122 123 2.315176 CAACTCACCCCCAAAATGACA 58.685 47.619 0.00 0.00 0.00 3.58
123 124 1.995376 ACTCACCCCCAAAATGACAC 58.005 50.000 0.00 0.00 0.00 3.67
124 125 1.216678 ACTCACCCCCAAAATGACACA 59.783 47.619 0.00 0.00 0.00 3.72
125 126 1.888512 CTCACCCCCAAAATGACACAG 59.111 52.381 0.00 0.00 0.00 3.66
126 127 1.496857 TCACCCCCAAAATGACACAGA 59.503 47.619 0.00 0.00 0.00 3.41
127 128 2.091610 TCACCCCCAAAATGACACAGAA 60.092 45.455 0.00 0.00 0.00 3.02
128 129 2.697751 CACCCCCAAAATGACACAGAAA 59.302 45.455 0.00 0.00 0.00 2.52
129 130 3.133721 CACCCCCAAAATGACACAGAAAA 59.866 43.478 0.00 0.00 0.00 2.29
130 131 3.777522 ACCCCCAAAATGACACAGAAAAA 59.222 39.130 0.00 0.00 0.00 1.94
157 158 8.638685 AAAAGAAAACATCACACATCTCAAAG 57.361 30.769 0.00 0.00 0.00 2.77
158 159 5.766222 AGAAAACATCACACATCTCAAAGC 58.234 37.500 0.00 0.00 0.00 3.51
159 160 5.300034 AGAAAACATCACACATCTCAAAGCA 59.700 36.000 0.00 0.00 0.00 3.91
160 161 4.761235 AACATCACACATCTCAAAGCAG 57.239 40.909 0.00 0.00 0.00 4.24
161 162 4.011966 ACATCACACATCTCAAAGCAGA 57.988 40.909 0.00 0.00 0.00 4.26
162 163 4.392047 ACATCACACATCTCAAAGCAGAA 58.608 39.130 0.00 0.00 0.00 3.02
163 164 5.008331 ACATCACACATCTCAAAGCAGAAT 58.992 37.500 0.00 0.00 0.00 2.40
164 165 5.475909 ACATCACACATCTCAAAGCAGAATT 59.524 36.000 0.00 0.00 0.00 2.17
165 166 5.366829 TCACACATCTCAAAGCAGAATTG 57.633 39.130 0.00 0.00 0.00 2.32
166 167 4.216902 TCACACATCTCAAAGCAGAATTGG 59.783 41.667 0.00 0.00 0.00 3.16
167 168 3.508793 ACACATCTCAAAGCAGAATTGGG 59.491 43.478 0.00 0.00 0.00 4.12
168 169 3.508793 CACATCTCAAAGCAGAATTGGGT 59.491 43.478 0.00 0.00 30.17 4.51
169 170 3.508793 ACATCTCAAAGCAGAATTGGGTG 59.491 43.478 0.00 0.00 30.17 4.61
170 171 2.517959 TCTCAAAGCAGAATTGGGTGG 58.482 47.619 0.00 0.00 30.17 4.61
171 172 0.968405 TCAAAGCAGAATTGGGTGGC 59.032 50.000 0.00 0.00 0.00 5.01
172 173 0.037046 CAAAGCAGAATTGGGTGGCC 60.037 55.000 0.00 0.00 0.00 5.36
173 174 0.471591 AAAGCAGAATTGGGTGGCCA 60.472 50.000 0.00 0.00 0.00 5.36
174 175 1.187567 AAGCAGAATTGGGTGGCCAC 61.188 55.000 28.57 28.57 0.00 5.01
175 176 1.907807 GCAGAATTGGGTGGCCACA 60.908 57.895 35.78 17.69 0.00 4.17
176 177 1.470996 GCAGAATTGGGTGGCCACAA 61.471 55.000 35.78 23.36 0.00 3.33
177 178 1.047002 CAGAATTGGGTGGCCACAAA 58.953 50.000 35.78 28.04 0.00 2.83
178 179 1.415659 CAGAATTGGGTGGCCACAAAA 59.584 47.619 35.78 27.69 0.00 2.44
179 180 2.038820 CAGAATTGGGTGGCCACAAAAT 59.961 45.455 35.78 28.54 0.00 1.82
180 181 2.302733 AGAATTGGGTGGCCACAAAATC 59.697 45.455 35.78 27.83 0.00 2.17
181 182 0.607620 ATTGGGTGGCCACAAAATCG 59.392 50.000 35.78 0.00 0.00 3.34
182 183 0.468214 TTGGGTGGCCACAAAATCGA 60.468 50.000 35.78 13.68 0.00 3.59
183 184 0.251564 TGGGTGGCCACAAAATCGAT 60.252 50.000 35.78 0.00 0.00 3.59
184 185 0.894835 GGGTGGCCACAAAATCGATT 59.105 50.000 35.78 4.39 0.00 3.34
185 186 1.404047 GGGTGGCCACAAAATCGATTG 60.404 52.381 35.78 4.12 36.37 2.67
186 187 1.543802 GGTGGCCACAAAATCGATTGA 59.456 47.619 35.78 0.00 34.38 2.57
187 188 2.595386 GTGGCCACAAAATCGATTGAC 58.405 47.619 31.23 0.96 34.38 3.18
188 189 2.228822 GTGGCCACAAAATCGATTGACT 59.771 45.455 31.23 0.00 34.38 3.41
189 190 3.438781 GTGGCCACAAAATCGATTGACTA 59.561 43.478 31.23 0.00 34.38 2.59
190 191 3.689161 TGGCCACAAAATCGATTGACTAG 59.311 43.478 12.25 2.54 34.38 2.57
191 192 3.065371 GGCCACAAAATCGATTGACTAGG 59.935 47.826 12.25 11.29 34.38 3.02
192 193 3.938963 GCCACAAAATCGATTGACTAGGA 59.061 43.478 12.25 0.00 34.38 2.94
193 194 4.034510 GCCACAAAATCGATTGACTAGGAG 59.965 45.833 12.25 0.00 34.38 3.69
194 195 4.034510 CCACAAAATCGATTGACTAGGAGC 59.965 45.833 12.25 0.00 34.38 4.70
195 196 4.872691 CACAAAATCGATTGACTAGGAGCT 59.127 41.667 12.25 0.00 34.38 4.09
196 197 5.006165 CACAAAATCGATTGACTAGGAGCTC 59.994 44.000 12.25 4.71 34.38 4.09
197 198 4.329462 AAATCGATTGACTAGGAGCTCC 57.671 45.455 26.22 26.22 0.00 4.70
198 199 1.693627 TCGATTGACTAGGAGCTCCC 58.306 55.000 29.54 14.36 36.42 4.30
199 200 0.676736 CGATTGACTAGGAGCTCCCC 59.323 60.000 29.54 15.99 36.42 4.81
200 201 1.794714 GATTGACTAGGAGCTCCCCA 58.205 55.000 29.54 18.34 36.42 4.96
201 202 2.119495 GATTGACTAGGAGCTCCCCAA 58.881 52.381 29.54 24.79 36.42 4.12
202 203 2.038863 TTGACTAGGAGCTCCCCAAA 57.961 50.000 29.54 13.76 36.42 3.28
203 204 1.276622 TGACTAGGAGCTCCCCAAAC 58.723 55.000 29.54 16.74 36.42 2.93
204 205 0.175989 GACTAGGAGCTCCCCAAACG 59.824 60.000 29.54 13.18 36.42 3.60
205 206 0.252103 ACTAGGAGCTCCCCAAACGA 60.252 55.000 29.54 5.22 36.42 3.85
206 207 1.123928 CTAGGAGCTCCCCAAACGAT 58.876 55.000 29.54 10.66 36.42 3.73
207 208 1.486726 CTAGGAGCTCCCCAAACGATT 59.513 52.381 29.54 9.89 36.42 3.34
208 209 0.253327 AGGAGCTCCCCAAACGATTC 59.747 55.000 29.54 0.00 36.42 2.52
209 210 0.748367 GGAGCTCCCCAAACGATTCC 60.748 60.000 23.19 0.00 0.00 3.01
210 211 0.035439 GAGCTCCCCAAACGATTCCA 60.035 55.000 0.87 0.00 0.00 3.53
211 212 0.322546 AGCTCCCCAAACGATTCCAC 60.323 55.000 0.00 0.00 0.00 4.02
212 213 0.608035 GCTCCCCAAACGATTCCACA 60.608 55.000 0.00 0.00 0.00 4.17
213 214 1.165270 CTCCCCAAACGATTCCACAC 58.835 55.000 0.00 0.00 0.00 3.82
214 215 0.474614 TCCCCAAACGATTCCACACA 59.525 50.000 0.00 0.00 0.00 3.72
215 216 0.881118 CCCCAAACGATTCCACACAG 59.119 55.000 0.00 0.00 0.00 3.66
216 217 0.240945 CCCAAACGATTCCACACAGC 59.759 55.000 0.00 0.00 0.00 4.40
217 218 0.240945 CCAAACGATTCCACACAGCC 59.759 55.000 0.00 0.00 0.00 4.85
218 219 0.240945 CAAACGATTCCACACAGCCC 59.759 55.000 0.00 0.00 0.00 5.19
219 220 0.179004 AAACGATTCCACACAGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
220 221 0.179004 AACGATTCCACACAGCCCAA 60.179 50.000 0.00 0.00 0.00 4.12
221 222 0.889186 ACGATTCCACACAGCCCAAC 60.889 55.000 0.00 0.00 0.00 3.77
222 223 0.606401 CGATTCCACACAGCCCAACT 60.606 55.000 0.00 0.00 0.00 3.16
223 224 1.168714 GATTCCACACAGCCCAACTC 58.831 55.000 0.00 0.00 0.00 3.01
224 225 0.478072 ATTCCACACAGCCCAACTCA 59.522 50.000 0.00 0.00 0.00 3.41
225 226 0.465460 TTCCACACAGCCCAACTCAC 60.465 55.000 0.00 0.00 0.00 3.51
226 227 1.898574 CCACACAGCCCAACTCACC 60.899 63.158 0.00 0.00 0.00 4.02
227 228 1.898574 CACACAGCCCAACTCACCC 60.899 63.158 0.00 0.00 0.00 4.61
228 229 2.282462 CACAGCCCAACTCACCCC 60.282 66.667 0.00 0.00 0.00 4.95
229 230 3.580319 ACAGCCCAACTCACCCCC 61.580 66.667 0.00 0.00 0.00 5.40
230 231 3.579302 CAGCCCAACTCACCCCCA 61.579 66.667 0.00 0.00 0.00 4.96
231 232 2.780924 AGCCCAACTCACCCCCAA 60.781 61.111 0.00 0.00 0.00 4.12
232 233 2.200092 GCCCAACTCACCCCCAAA 59.800 61.111 0.00 0.00 0.00 3.28
233 234 1.458588 GCCCAACTCACCCCCAAAA 60.459 57.895 0.00 0.00 0.00 2.44
234 235 0.835971 GCCCAACTCACCCCCAAAAT 60.836 55.000 0.00 0.00 0.00 1.82
235 236 0.975887 CCCAACTCACCCCCAAAATG 59.024 55.000 0.00 0.00 0.00 2.32
236 237 1.482177 CCCAACTCACCCCCAAAATGA 60.482 52.381 0.00 0.00 0.00 2.57
237 238 1.618343 CCAACTCACCCCCAAAATGAC 59.382 52.381 0.00 0.00 0.00 3.06
238 239 2.315176 CAACTCACCCCCAAAATGACA 58.685 47.619 0.00 0.00 0.00 3.58
239 240 1.995376 ACTCACCCCCAAAATGACAC 58.005 50.000 0.00 0.00 0.00 3.67
240 241 1.216678 ACTCACCCCCAAAATGACACA 59.783 47.619 0.00 0.00 0.00 3.72
241 242 1.888512 CTCACCCCCAAAATGACACAG 59.111 52.381 0.00 0.00 0.00 3.66
242 243 1.496857 TCACCCCCAAAATGACACAGA 59.503 47.619 0.00 0.00 0.00 3.41
243 244 2.091610 TCACCCCCAAAATGACACAGAA 60.092 45.455 0.00 0.00 0.00 3.02
244 245 2.697751 CACCCCCAAAATGACACAGAAA 59.302 45.455 0.00 0.00 0.00 2.52
245 246 3.133721 CACCCCCAAAATGACACAGAAAA 59.866 43.478 0.00 0.00 0.00 2.29
246 247 3.777522 ACCCCCAAAATGACACAGAAAAA 59.222 39.130 0.00 0.00 0.00 1.94
274 275 8.579682 AAAGAAAACATTACACATCTCAAAGC 57.420 30.769 0.00 0.00 0.00 3.51
275 276 7.275888 AGAAAACATTACACATCTCAAAGCA 57.724 32.000 0.00 0.00 0.00 3.91
276 277 7.365741 AGAAAACATTACACATCTCAAAGCAG 58.634 34.615 0.00 0.00 0.00 4.24
277 278 6.882610 AAACATTACACATCTCAAAGCAGA 57.117 33.333 0.00 0.00 0.00 4.26
278 279 6.882610 AACATTACACATCTCAAAGCAGAA 57.117 33.333 0.00 0.00 0.00 3.02
279 280 7.458409 AACATTACACATCTCAAAGCAGAAT 57.542 32.000 0.00 0.00 0.00 2.40
280 281 7.081526 ACATTACACATCTCAAAGCAGAATC 57.918 36.000 0.00 0.00 0.00 2.52
281 282 5.784750 TTACACATCTCAAAGCAGAATCG 57.215 39.130 0.00 0.00 0.00 3.34
282 283 3.930336 ACACATCTCAAAGCAGAATCGA 58.070 40.909 0.00 0.00 0.00 3.59
283 284 3.931468 ACACATCTCAAAGCAGAATCGAG 59.069 43.478 0.00 0.00 0.00 4.04
284 285 3.931468 CACATCTCAAAGCAGAATCGAGT 59.069 43.478 0.00 0.00 0.00 4.18
285 286 3.931468 ACATCTCAAAGCAGAATCGAGTG 59.069 43.478 0.00 0.00 0.00 3.51
286 287 2.964740 TCTCAAAGCAGAATCGAGTGG 58.035 47.619 0.00 0.00 0.00 4.00
287 288 1.396301 CTCAAAGCAGAATCGAGTGGC 59.604 52.381 0.00 0.00 0.00 5.01
288 289 0.449388 CAAAGCAGAATCGAGTGGCC 59.551 55.000 0.00 0.00 0.00 5.36
289 290 0.036732 AAAGCAGAATCGAGTGGCCA 59.963 50.000 0.00 0.00 0.00 5.36
290 291 0.674895 AAGCAGAATCGAGTGGCCAC 60.675 55.000 29.22 29.22 0.00 5.01
291 292 1.375908 GCAGAATCGAGTGGCCACA 60.376 57.895 36.39 17.95 0.00 4.17
292 293 0.955428 GCAGAATCGAGTGGCCACAA 60.955 55.000 36.39 21.83 0.00 3.33
293 294 1.522668 CAGAATCGAGTGGCCACAAA 58.477 50.000 36.39 21.46 0.00 2.83
294 295 1.879380 CAGAATCGAGTGGCCACAAAA 59.121 47.619 36.39 21.09 0.00 2.44
295 296 2.489329 CAGAATCGAGTGGCCACAAAAT 59.511 45.455 36.39 22.33 0.00 1.82
296 297 2.749621 AGAATCGAGTGGCCACAAAATC 59.250 45.455 36.39 24.95 0.00 2.17
297 298 1.086696 ATCGAGTGGCCACAAAATCG 58.913 50.000 36.39 32.52 33.29 3.34
298 299 0.034198 TCGAGTGGCCACAAAATCGA 59.966 50.000 32.28 32.28 36.56 3.59
299 300 1.086696 CGAGTGGCCACAAAATCGAT 58.913 50.000 36.39 14.43 33.62 3.59
300 301 1.468520 CGAGTGGCCACAAAATCGATT 59.531 47.619 36.39 13.63 33.62 3.34
301 302 2.728846 CGAGTGGCCACAAAATCGATTG 60.729 50.000 36.39 14.02 33.62 2.67
302 303 2.487762 GAGTGGCCACAAAATCGATTGA 59.512 45.455 36.39 0.00 34.38 2.57
303 304 2.228822 AGTGGCCACAAAATCGATTGAC 59.771 45.455 36.39 5.31 34.38 3.18
304 305 1.543802 TGGCCACAAAATCGATTGACC 59.456 47.619 12.25 2.09 34.38 4.02
305 306 1.135112 GGCCACAAAATCGATTGACCC 60.135 52.381 12.25 3.40 34.38 4.46
306 307 1.543802 GCCACAAAATCGATTGACCCA 59.456 47.619 12.25 0.00 34.38 4.51
307 308 2.029470 GCCACAAAATCGATTGACCCAA 60.029 45.455 12.25 0.00 34.38 4.12
308 309 3.553922 GCCACAAAATCGATTGACCCAAA 60.554 43.478 12.25 0.00 34.38 3.28
309 310 4.819769 CCACAAAATCGATTGACCCAAAT 58.180 39.130 12.25 0.00 34.38 2.32
310 311 5.623368 GCCACAAAATCGATTGACCCAAATA 60.623 40.000 12.25 0.00 34.38 1.40
311 312 6.393990 CCACAAAATCGATTGACCCAAATAA 58.606 36.000 12.25 0.00 34.38 1.40
312 313 6.531240 CCACAAAATCGATTGACCCAAATAAG 59.469 38.462 12.25 0.00 34.38 1.73
313 314 7.312154 CACAAAATCGATTGACCCAAATAAGA 58.688 34.615 12.25 0.00 34.38 2.10
314 315 7.812191 CACAAAATCGATTGACCCAAATAAGAA 59.188 33.333 12.25 0.00 34.38 2.52
315 316 8.531146 ACAAAATCGATTGACCCAAATAAGAAT 58.469 29.630 12.25 0.00 34.38 2.40
316 317 9.369904 CAAAATCGATTGACCCAAATAAGAATT 57.630 29.630 12.25 0.00 31.84 2.17
317 318 9.942850 AAAATCGATTGACCCAAATAAGAATTT 57.057 25.926 12.25 0.00 35.65 1.82
318 319 9.942850 AAATCGATTGACCCAAATAAGAATTTT 57.057 25.926 12.25 0.00 32.87 1.82
319 320 9.586435 AATCGATTGACCCAAATAAGAATTTTC 57.414 29.630 10.50 0.00 32.87 2.29
320 321 8.116651 TCGATTGACCCAAATAAGAATTTTCA 57.883 30.769 0.00 0.00 32.87 2.69
321 322 8.243426 TCGATTGACCCAAATAAGAATTTTCAG 58.757 33.333 0.00 0.00 32.87 3.02
322 323 7.009540 CGATTGACCCAAATAAGAATTTTCAGC 59.990 37.037 0.00 0.00 32.87 4.26
323 324 6.916360 TGACCCAAATAAGAATTTTCAGCT 57.084 33.333 0.00 0.00 32.87 4.24
324 325 6.690530 TGACCCAAATAAGAATTTTCAGCTG 58.309 36.000 7.63 7.63 32.87 4.24
325 326 6.493115 TGACCCAAATAAGAATTTTCAGCTGA 59.507 34.615 13.74 13.74 32.87 4.26
326 327 6.691508 ACCCAAATAAGAATTTTCAGCTGAC 58.308 36.000 18.03 4.30 32.87 3.51
327 328 6.494835 ACCCAAATAAGAATTTTCAGCTGACT 59.505 34.615 18.03 6.97 32.87 3.41
328 329 6.810182 CCCAAATAAGAATTTTCAGCTGACTG 59.190 38.462 18.03 0.00 37.99 3.51
409 426 3.003480 CCTCCTTCTCTTTTTAGTGCCG 58.997 50.000 0.00 0.00 0.00 5.69
435 452 3.054878 CGTTTACTTACCAACTGCTCGT 58.945 45.455 0.00 0.00 0.00 4.18
505 527 4.573900 ACCAGATAGTCAAGCAAGACAAG 58.426 43.478 10.60 0.00 40.98 3.16
625 2020 4.400529 ACAACCCAAGAAAAATCCACAC 57.599 40.909 0.00 0.00 0.00 3.82
692 2113 4.501071 ACAAAGTTGTACGAGAACACACT 58.499 39.130 0.00 0.00 40.16 3.55
732 2183 3.717707 TCGATATTTCAAGCCTTCCTCG 58.282 45.455 0.00 0.00 0.00 4.63
897 3989 2.588464 AAAGTCTCTCGTCTCCCTCA 57.412 50.000 0.00 0.00 0.00 3.86
919 4013 4.529109 AGAGAAACACAAGGCTCTCTAC 57.471 45.455 0.00 0.00 42.20 2.59
1364 4506 0.531974 TCAAGTGCGAGGTGGTGAAC 60.532 55.000 0.00 0.00 0.00 3.18
1741 4894 3.624777 CATGGTTGCAAATACTCCCTCT 58.375 45.455 0.00 0.00 0.00 3.69
1742 4895 4.780815 CATGGTTGCAAATACTCCCTCTA 58.219 43.478 0.00 0.00 0.00 2.43
1743 4896 5.380043 CATGGTTGCAAATACTCCCTCTAT 58.620 41.667 0.00 0.00 0.00 1.98
1744 4897 5.450818 TGGTTGCAAATACTCCCTCTATT 57.549 39.130 0.00 0.00 0.00 1.73
1745 4898 5.437060 TGGTTGCAAATACTCCCTCTATTC 58.563 41.667 0.00 0.00 0.00 1.75
1746 4899 5.045213 TGGTTGCAAATACTCCCTCTATTCA 60.045 40.000 0.00 0.00 0.00 2.57
1747 4900 6.064717 GGTTGCAAATACTCCCTCTATTCAT 58.935 40.000 0.00 0.00 0.00 2.57
1748 4901 7.147391 TGGTTGCAAATACTCCCTCTATTCATA 60.147 37.037 0.00 0.00 0.00 2.15
1749 4902 7.719633 GGTTGCAAATACTCCCTCTATTCATAA 59.280 37.037 0.00 0.00 0.00 1.90
1750 4903 9.120538 GTTGCAAATACTCCCTCTATTCATAAA 57.879 33.333 0.00 0.00 0.00 1.40
1751 4904 9.866655 TTGCAAATACTCCCTCTATTCATAAAT 57.133 29.630 0.00 0.00 0.00 1.40
1780 4933 9.787532 TTGTCTTTTTAGAGATTTCAACAAGTG 57.212 29.630 0.00 0.00 0.00 3.16
1781 4934 9.173021 TGTCTTTTTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
1782 4935 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
1783 4936 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
1786 4939 7.869016 TTAGAGATTTCAACAAGTGACTACG 57.131 36.000 0.00 0.00 35.39 3.51
1787 4940 5.844004 AGAGATTTCAACAAGTGACTACGT 58.156 37.500 0.00 0.00 35.39 3.57
1788 4941 6.978338 AGAGATTTCAACAAGTGACTACGTA 58.022 36.000 0.00 0.00 35.39 3.57
1789 4942 6.862090 AGAGATTTCAACAAGTGACTACGTAC 59.138 38.462 0.00 0.00 35.39 3.67
1790 4943 5.628193 AGATTTCAACAAGTGACTACGTACG 59.372 40.000 15.01 15.01 35.39 3.67
1791 4944 4.550577 TTCAACAAGTGACTACGTACGA 57.449 40.909 24.41 4.69 35.39 3.43
1792 4945 4.550577 TCAACAAGTGACTACGTACGAA 57.449 40.909 24.41 0.00 0.00 3.85
1793 4946 4.530388 TCAACAAGTGACTACGTACGAAG 58.470 43.478 24.41 3.04 0.00 3.79
1794 4947 2.926165 ACAAGTGACTACGTACGAAGC 58.074 47.619 24.41 8.63 0.00 3.86
1795 4948 2.291465 ACAAGTGACTACGTACGAAGCA 59.709 45.455 24.41 11.19 0.00 3.91
1796 4949 3.243168 ACAAGTGACTACGTACGAAGCAA 60.243 43.478 24.41 1.18 0.00 3.91
1797 4950 3.631145 AGTGACTACGTACGAAGCAAA 57.369 42.857 24.41 0.00 0.00 3.68
1798 4951 3.968649 AGTGACTACGTACGAAGCAAAA 58.031 40.909 24.41 0.00 0.00 2.44
1799 4952 4.553323 AGTGACTACGTACGAAGCAAAAT 58.447 39.130 24.41 0.00 0.00 1.82
1800 4953 4.384846 AGTGACTACGTACGAAGCAAAATG 59.615 41.667 24.41 3.37 0.00 2.32
1801 4954 4.383649 GTGACTACGTACGAAGCAAAATGA 59.616 41.667 24.41 0.00 0.00 2.57
1802 4955 4.619760 TGACTACGTACGAAGCAAAATGAG 59.380 41.667 24.41 5.34 0.00 2.90
1803 4956 4.553323 ACTACGTACGAAGCAAAATGAGT 58.447 39.130 24.41 5.92 0.00 3.41
1804 4957 3.788434 ACGTACGAAGCAAAATGAGTG 57.212 42.857 24.41 0.00 0.00 3.51
1805 4958 3.386486 ACGTACGAAGCAAAATGAGTGA 58.614 40.909 24.41 0.00 0.00 3.41
1806 4959 3.805422 ACGTACGAAGCAAAATGAGTGAA 59.195 39.130 24.41 0.00 0.00 3.18
1807 4960 4.451096 ACGTACGAAGCAAAATGAGTGAAT 59.549 37.500 24.41 0.00 0.00 2.57
1808 4961 5.015733 CGTACGAAGCAAAATGAGTGAATC 58.984 41.667 10.44 0.00 0.00 2.52
1809 4962 4.425577 ACGAAGCAAAATGAGTGAATCC 57.574 40.909 0.00 0.00 0.00 3.01
1810 4963 3.820467 ACGAAGCAAAATGAGTGAATCCA 59.180 39.130 0.00 0.00 0.00 3.41
1811 4964 4.278170 ACGAAGCAAAATGAGTGAATCCAA 59.722 37.500 0.00 0.00 0.00 3.53
1812 4965 5.221224 ACGAAGCAAAATGAGTGAATCCAAA 60.221 36.000 0.00 0.00 0.00 3.28
1813 4966 5.117592 CGAAGCAAAATGAGTGAATCCAAAC 59.882 40.000 0.00 0.00 0.00 2.93
1814 4967 5.796424 AGCAAAATGAGTGAATCCAAACT 57.204 34.783 0.00 0.00 0.00 2.66
1815 4968 6.165700 AGCAAAATGAGTGAATCCAAACTT 57.834 33.333 0.00 0.00 0.00 2.66
1816 4969 6.585416 AGCAAAATGAGTGAATCCAAACTTT 58.415 32.000 0.00 0.00 0.00 2.66
1817 4970 7.725251 AGCAAAATGAGTGAATCCAAACTTTA 58.275 30.769 0.00 0.00 0.00 1.85
1818 4971 8.203485 AGCAAAATGAGTGAATCCAAACTTTAA 58.797 29.630 0.00 0.00 0.00 1.52
1819 4972 8.825745 GCAAAATGAGTGAATCCAAACTTTAAA 58.174 29.630 0.00 0.00 0.00 1.52
1851 5004 4.806330 CATACATCCGTATGTGGTAGTCC 58.194 47.826 3.56 0.00 46.70 3.85
1852 5005 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
1853 5006 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
1854 5007 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
1855 5008 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
1856 5009 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
1857 5010 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
1858 5011 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
1859 5012 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
1860 5013 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
1861 5014 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
1862 5015 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
1863 5016 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
1864 5017 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
1865 5018 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
1866 5019 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
1867 5020 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
1868 5021 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
1869 5022 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
1873 5026 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
1874 5027 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
1891 5044 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1892 5045 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1893 5046 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1894 5047 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1895 5048 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1896 5049 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1897 5050 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
1900 5053 4.803329 TTAGGAACGGAGGGAGTACTAT 57.197 45.455 0.00 0.00 0.00 2.12
1917 5070 7.755822 GGAGTACTATTGATTATGTAAGCTCCG 59.244 40.741 0.00 0.00 0.00 4.63
1925 5078 1.903877 ATGTAAGCTCCGCTGCTGGT 61.904 55.000 9.66 0.00 43.24 4.00
1926 5079 1.376037 GTAAGCTCCGCTGCTGGTT 60.376 57.895 9.66 8.13 43.24 3.67
1982 5137 5.871396 TTGGGTGCCTACATTTGTTTTTA 57.129 34.783 0.00 0.00 0.00 1.52
2097 5258 3.252215 CGGTGCACTTCTATTTCCAAACA 59.748 43.478 17.98 0.00 0.00 2.83
2098 5259 4.613622 CGGTGCACTTCTATTTCCAAACAG 60.614 45.833 17.98 0.00 0.00 3.16
2099 5260 4.321230 GGTGCACTTCTATTTCCAAACAGG 60.321 45.833 17.98 0.00 39.47 4.00
2100 5261 3.826157 TGCACTTCTATTTCCAAACAGGG 59.174 43.478 0.00 0.00 38.24 4.45
2101 5262 3.367395 GCACTTCTATTTCCAAACAGGGC 60.367 47.826 0.00 0.00 38.24 5.19
2102 5263 3.193479 CACTTCTATTTCCAAACAGGGCC 59.807 47.826 0.00 0.00 38.24 5.80
2363 5524 1.871080 CCTCCCGAGTATACGTACGT 58.129 55.000 25.98 25.98 35.92 3.57
2364 5525 2.213499 CCTCCCGAGTATACGTACGTT 58.787 52.381 27.92 16.17 35.92 3.99
2365 5526 3.390135 CCTCCCGAGTATACGTACGTTA 58.610 50.000 27.92 15.16 35.92 3.18
2366 5527 3.807622 CCTCCCGAGTATACGTACGTTAA 59.192 47.826 27.92 10.15 35.92 2.01
2367 5528 4.452455 CCTCCCGAGTATACGTACGTTAAT 59.548 45.833 27.92 17.17 35.92 1.40
2368 5529 5.637810 CCTCCCGAGTATACGTACGTTAATA 59.362 44.000 27.92 16.07 35.92 0.98
2369 5530 6.401153 CCTCCCGAGTATACGTACGTTAATAC 60.401 46.154 27.92 25.63 35.92 1.89
2383 5544 4.107622 CGTTAATACGTACAGGTCTTGGG 58.892 47.826 0.00 0.00 42.72 4.12
2384 5545 4.436332 GTTAATACGTACAGGTCTTGGGG 58.564 47.826 0.00 0.00 0.00 4.96
2385 5546 1.492764 ATACGTACAGGTCTTGGGGG 58.507 55.000 0.00 0.00 0.00 5.40
2401 5562 1.438814 GGGGGCAAATCAATCAGCG 59.561 57.895 0.00 0.00 0.00 5.18
2402 5563 1.227060 GGGGCAAATCAATCAGCGC 60.227 57.895 0.00 0.00 38.96 5.92
2403 5564 1.227060 GGGCAAATCAATCAGCGCC 60.227 57.895 2.29 0.00 38.85 6.53
2404 5565 1.669999 GGGCAAATCAATCAGCGCCT 61.670 55.000 2.29 0.00 39.53 5.52
2405 5566 0.526954 GGCAAATCAATCAGCGCCTG 60.527 55.000 2.29 1.50 36.58 4.85
2406 5567 0.526954 GCAAATCAATCAGCGCCTGG 60.527 55.000 2.29 0.00 31.51 4.45
2407 5568 0.526954 CAAATCAATCAGCGCCTGGC 60.527 55.000 9.11 9.11 44.05 4.85
2416 5577 3.042560 GCGCCTGGCTCTTTTGTT 58.957 55.556 17.92 0.00 39.11 2.83
2417 5578 1.363807 GCGCCTGGCTCTTTTGTTT 59.636 52.632 17.92 0.00 39.11 2.83
2418 5579 0.249447 GCGCCTGGCTCTTTTGTTTT 60.249 50.000 17.92 0.00 39.11 2.43
2419 5580 1.806247 GCGCCTGGCTCTTTTGTTTTT 60.806 47.619 17.92 0.00 39.11 1.94
2441 5602 7.444558 TTTTATTTTGATTAAATCTCGGCGC 57.555 32.000 0.00 0.00 37.60 6.53
2442 5603 3.414549 TTTTGATTAAATCTCGGCGCC 57.585 42.857 19.07 19.07 0.00 6.53
2443 5604 2.325583 TTGATTAAATCTCGGCGCCT 57.674 45.000 26.68 6.90 0.00 5.52
2444 5605 1.865865 TGATTAAATCTCGGCGCCTC 58.134 50.000 26.68 12.34 0.00 4.70
2445 5606 0.784778 GATTAAATCTCGGCGCCTCG 59.215 55.000 26.68 15.32 0.00 4.63
2456 5617 2.884685 CGCCTCGCTCAGCTTCTG 60.885 66.667 0.00 0.00 0.00 3.02
2457 5618 3.194308 GCCTCGCTCAGCTTCTGC 61.194 66.667 0.00 0.00 40.05 4.26
2461 5622 4.144681 CGCTCAGCTTCTGCGTGC 62.145 66.667 14.27 1.61 45.42 5.34
2462 5623 2.741598 GCTCAGCTTCTGCGTGCT 60.742 61.111 0.00 0.00 45.42 4.40
2463 5624 1.446792 GCTCAGCTTCTGCGTGCTA 60.447 57.895 0.00 0.00 45.42 3.49
2464 5625 1.419874 GCTCAGCTTCTGCGTGCTAG 61.420 60.000 0.00 0.00 45.42 3.42
2465 5626 1.419874 CTCAGCTTCTGCGTGCTAGC 61.420 60.000 8.10 8.10 45.42 3.42
2466 5627 1.447489 CAGCTTCTGCGTGCTAGCT 60.447 57.895 17.23 9.71 44.34 3.32
2467 5628 0.179127 CAGCTTCTGCGTGCTAGCTA 60.179 55.000 17.23 0.00 41.76 3.32
2468 5629 0.102120 AGCTTCTGCGTGCTAGCTAG 59.898 55.000 16.84 16.84 41.87 3.42
2469 5630 3.806571 AGCTTCTGCGTGCTAGCTAGC 62.807 57.143 34.20 34.20 46.06 3.42
2482 5643 5.532664 GCTAGCTAGCCTAGGAAAGTAAA 57.467 43.478 31.67 0.00 43.15 2.01
2483 5644 5.291178 GCTAGCTAGCCTAGGAAAGTAAAC 58.709 45.833 31.67 1.51 43.15 2.01
2484 5645 5.163437 GCTAGCTAGCCTAGGAAAGTAAACA 60.163 44.000 31.67 0.00 43.15 2.83
2485 5646 5.346181 AGCTAGCCTAGGAAAGTAAACAG 57.654 43.478 14.75 0.00 0.00 3.16
2486 5647 5.024118 AGCTAGCCTAGGAAAGTAAACAGA 58.976 41.667 14.75 0.00 0.00 3.41
2487 5648 5.663556 AGCTAGCCTAGGAAAGTAAACAGAT 59.336 40.000 14.75 0.00 0.00 2.90
2488 5649 6.157123 AGCTAGCCTAGGAAAGTAAACAGATT 59.843 38.462 14.75 0.00 0.00 2.40
2489 5650 6.824196 GCTAGCCTAGGAAAGTAAACAGATTT 59.176 38.462 14.75 0.00 0.00 2.17
2490 5651 7.201652 GCTAGCCTAGGAAAGTAAACAGATTTG 60.202 40.741 14.75 0.00 0.00 2.32
2491 5652 5.946377 AGCCTAGGAAAGTAAACAGATTTGG 59.054 40.000 14.75 0.00 0.00 3.28
2492 5653 5.710567 GCCTAGGAAAGTAAACAGATTTGGT 59.289 40.000 14.75 0.00 0.00 3.67
2493 5654 6.349363 GCCTAGGAAAGTAAACAGATTTGGTG 60.349 42.308 14.75 0.00 0.00 4.17
2494 5655 6.940298 CCTAGGAAAGTAAACAGATTTGGTGA 59.060 38.462 1.05 0.00 0.00 4.02
2495 5656 6.884280 AGGAAAGTAAACAGATTTGGTGAG 57.116 37.500 0.00 0.00 0.00 3.51
2496 5657 5.241728 AGGAAAGTAAACAGATTTGGTGAGC 59.758 40.000 0.00 0.00 0.00 4.26
2497 5658 5.453567 AAAGTAAACAGATTTGGTGAGCC 57.546 39.130 0.00 0.00 0.00 4.70
2498 5659 4.373156 AGTAAACAGATTTGGTGAGCCT 57.627 40.909 0.00 0.00 35.27 4.58
2499 5660 4.074970 AGTAAACAGATTTGGTGAGCCTG 58.925 43.478 0.00 0.00 35.27 4.85
2500 5661 1.915141 AACAGATTTGGTGAGCCTGG 58.085 50.000 0.00 0.00 35.27 4.45
2501 5662 0.610232 ACAGATTTGGTGAGCCTGGC 60.610 55.000 11.65 11.65 35.27 4.85
2502 5663 1.000396 AGATTTGGTGAGCCTGGCC 60.000 57.895 16.57 7.66 35.27 5.36
2503 5664 2.037847 ATTTGGTGAGCCTGGCCC 59.962 61.111 16.57 10.42 35.27 5.80
2504 5665 2.786512 GATTTGGTGAGCCTGGCCCA 62.787 60.000 16.57 13.21 35.27 5.36
2505 5666 2.172229 ATTTGGTGAGCCTGGCCCAT 62.172 55.000 16.57 0.00 35.27 4.00
2506 5667 1.505151 TTTGGTGAGCCTGGCCCATA 61.505 55.000 16.57 8.23 35.27 2.74
2507 5668 1.288508 TTGGTGAGCCTGGCCCATAT 61.289 55.000 16.57 0.00 35.27 1.78
2508 5669 1.288508 TGGTGAGCCTGGCCCATATT 61.289 55.000 16.57 0.00 35.27 1.28
2509 5670 0.538287 GGTGAGCCTGGCCCATATTC 60.538 60.000 16.57 5.69 0.00 1.75
2510 5671 0.886490 GTGAGCCTGGCCCATATTCG 60.886 60.000 16.57 0.00 0.00 3.34
2511 5672 1.968540 GAGCCTGGCCCATATTCGC 60.969 63.158 16.57 0.00 0.00 4.70
2512 5673 2.203337 GCCTGGCCCATATTCGCA 60.203 61.111 7.66 0.00 0.00 5.10
2513 5674 2.555547 GCCTGGCCCATATTCGCAC 61.556 63.158 7.66 0.00 0.00 5.34
2514 5675 1.898574 CCTGGCCCATATTCGCACC 60.899 63.158 0.00 0.00 0.00 5.01
2515 5676 2.203139 TGGCCCATATTCGCACCG 60.203 61.111 0.00 0.00 0.00 4.94
2516 5677 2.203153 GGCCCATATTCGCACCGT 60.203 61.111 0.00 0.00 0.00 4.83
2517 5678 2.251642 GGCCCATATTCGCACCGTC 61.252 63.158 0.00 0.00 0.00 4.79
2518 5679 2.594962 GCCCATATTCGCACCGTCG 61.595 63.158 0.00 0.00 0.00 5.12
2519 5680 2.594962 CCCATATTCGCACCGTCGC 61.595 63.158 0.00 0.00 0.00 5.19
2520 5681 1.880796 CCATATTCGCACCGTCGCA 60.881 57.895 0.00 0.00 0.00 5.10
2521 5682 1.272715 CATATTCGCACCGTCGCAC 59.727 57.895 0.00 0.00 0.00 5.34
2522 5683 2.228241 ATATTCGCACCGTCGCACG 61.228 57.895 2.27 2.27 42.11 5.34
2523 5684 2.877360 ATATTCGCACCGTCGCACGT 62.877 55.000 7.68 0.00 40.58 4.49
2524 5685 2.250841 TATTCGCACCGTCGCACGTA 62.251 55.000 7.68 0.00 40.58 3.57
2527 5688 3.170585 GCACCGTCGCACGTACTC 61.171 66.667 7.68 0.00 40.58 2.59
2528 5689 2.253154 CACCGTCGCACGTACTCA 59.747 61.111 7.68 0.00 40.58 3.41
2529 5690 2.078914 CACCGTCGCACGTACTCAC 61.079 63.158 7.68 0.00 40.58 3.51
2543 5704 2.433004 TCACGTGGAGACCGGAGA 59.567 61.111 17.00 0.00 0.00 3.71
2544 5705 1.674651 TCACGTGGAGACCGGAGAG 60.675 63.158 17.00 0.00 0.00 3.20
2545 5706 1.674651 CACGTGGAGACCGGAGAGA 60.675 63.158 9.46 0.00 0.00 3.10
2546 5707 1.074423 ACGTGGAGACCGGAGAGAA 59.926 57.895 9.46 0.00 0.00 2.87
2547 5708 0.538977 ACGTGGAGACCGGAGAGAAA 60.539 55.000 9.46 0.00 0.00 2.52
2548 5709 0.601558 CGTGGAGACCGGAGAGAAAA 59.398 55.000 9.46 0.00 0.00 2.29
2549 5710 1.402984 CGTGGAGACCGGAGAGAAAAG 60.403 57.143 9.46 0.00 0.00 2.27
2550 5711 1.066787 GTGGAGACCGGAGAGAAAAGG 60.067 57.143 9.46 0.00 0.00 3.11
2551 5712 1.203137 TGGAGACCGGAGAGAAAAGGA 60.203 52.381 9.46 0.00 0.00 3.36
2552 5713 1.900486 GGAGACCGGAGAGAAAAGGAA 59.100 52.381 9.46 0.00 0.00 3.36
2553 5714 2.502130 GGAGACCGGAGAGAAAAGGAAT 59.498 50.000 9.46 0.00 0.00 3.01
2554 5715 3.431068 GGAGACCGGAGAGAAAAGGAATC 60.431 52.174 9.46 0.00 0.00 2.52
2555 5716 2.166664 AGACCGGAGAGAAAAGGAATCG 59.833 50.000 9.46 0.00 0.00 3.34
2556 5717 1.900486 ACCGGAGAGAAAAGGAATCGT 59.100 47.619 9.46 0.00 0.00 3.73
2557 5718 2.302157 ACCGGAGAGAAAAGGAATCGTT 59.698 45.455 9.46 0.00 0.00 3.85
2558 5719 2.930682 CCGGAGAGAAAAGGAATCGTTC 59.069 50.000 0.00 0.00 0.00 3.95
2572 5733 5.567138 GAATCGTTCCATTGATTTCCTGT 57.433 39.130 0.00 0.00 35.06 4.00
2573 5734 6.677781 GAATCGTTCCATTGATTTCCTGTA 57.322 37.500 0.00 0.00 35.06 2.74
2574 5735 7.083875 GAATCGTTCCATTGATTTCCTGTAA 57.916 36.000 0.00 0.00 35.06 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.722700 CAACCTCTGGGTGGGCCG 62.723 72.222 0.00 0.00 46.67 6.13
13 14 3.146828 AACAACCTCTGGGTGGGCC 62.147 63.158 6.59 0.00 46.67 5.80
14 15 1.903404 CAACAACCTCTGGGTGGGC 60.903 63.158 6.59 0.00 46.67 5.36
15 16 1.903404 GCAACAACCTCTGGGTGGG 60.903 63.158 6.59 0.00 46.67 4.61
16 17 2.260869 CGCAACAACCTCTGGGTGG 61.261 63.158 6.59 0.00 46.67 4.61
17 18 1.227823 TCGCAACAACCTCTGGGTG 60.228 57.895 0.00 0.00 46.67 4.61
19 20 2.328099 GCTCGCAACAACCTCTGGG 61.328 63.158 0.00 0.00 38.88 4.45
20 21 2.671177 CGCTCGCAACAACCTCTGG 61.671 63.158 0.00 0.00 0.00 3.86
21 22 2.856032 CGCTCGCAACAACCTCTG 59.144 61.111 0.00 0.00 0.00 3.35
22 23 3.044305 GCGCTCGCAACAACCTCT 61.044 61.111 9.59 0.00 41.49 3.69
23 24 4.090057 GGCGCTCGCAACAACCTC 62.090 66.667 16.36 0.00 44.11 3.85
24 25 4.927782 TGGCGCTCGCAACAACCT 62.928 61.111 16.36 0.00 44.11 3.50
25 26 4.389576 CTGGCGCTCGCAACAACC 62.390 66.667 16.36 0.00 44.11 3.77
26 27 1.837538 TAACTGGCGCTCGCAACAAC 61.838 55.000 16.36 0.00 44.11 3.32
27 28 1.595655 TAACTGGCGCTCGCAACAA 60.596 52.632 16.36 0.00 44.11 2.83
28 29 2.029815 TAACTGGCGCTCGCAACA 59.970 55.556 16.36 4.94 44.11 3.33
29 30 2.474712 GTAACTGGCGCTCGCAAC 59.525 61.111 16.36 0.14 44.11 4.17
30 31 3.109547 CGTAACTGGCGCTCGCAA 61.110 61.111 16.36 3.63 44.11 4.85
31 32 3.851845 AACGTAACTGGCGCTCGCA 62.852 57.895 16.36 0.00 44.11 5.10
32 33 3.110178 AACGTAACTGGCGCTCGC 61.110 61.111 7.64 5.60 41.06 5.03
33 34 2.769617 CAACGTAACTGGCGCTCG 59.230 61.111 7.64 0.30 0.00 5.03
34 35 2.474712 GCAACGTAACTGGCGCTC 59.525 61.111 7.64 0.00 0.00 5.03
35 36 3.411351 CGCAACGTAACTGGCGCT 61.411 61.111 7.64 0.00 43.14 5.92
38 39 4.439472 CCGCGCAACGTAACTGGC 62.439 66.667 8.75 0.00 41.42 4.85
39 40 4.439472 GCCGCGCAACGTAACTGG 62.439 66.667 8.75 0.00 41.42 4.00
40 41 4.770102 CGCCGCGCAACGTAACTG 62.770 66.667 8.75 0.00 41.42 3.16
57 58 1.520342 CCTAGTCAGCGCCTTCAGC 60.520 63.158 2.29 0.00 38.52 4.26
58 59 0.102120 CTCCTAGTCAGCGCCTTCAG 59.898 60.000 2.29 0.00 0.00 3.02
59 60 1.949847 GCTCCTAGTCAGCGCCTTCA 61.950 60.000 2.29 0.00 0.00 3.02
60 61 1.227118 GCTCCTAGTCAGCGCCTTC 60.227 63.158 2.29 0.00 0.00 3.46
61 62 1.671901 GAGCTCCTAGTCAGCGCCTT 61.672 60.000 2.29 0.00 42.14 4.35
62 63 2.043450 AGCTCCTAGTCAGCGCCT 60.043 61.111 2.29 0.00 42.14 5.52
63 64 2.415426 GAGCTCCTAGTCAGCGCC 59.585 66.667 2.29 0.00 42.14 6.53
64 65 2.415426 GGAGCTCCTAGTCAGCGC 59.585 66.667 26.25 0.00 42.14 5.92
65 66 2.494530 GGGGAGCTCCTAGTCAGCG 61.495 68.421 31.36 0.00 42.14 5.18
66 67 0.978146 TTGGGGAGCTCCTAGTCAGC 60.978 60.000 31.36 13.25 37.12 4.26
67 68 1.208293 GTTTGGGGAGCTCCTAGTCAG 59.792 57.143 31.36 0.00 35.95 3.51
68 69 1.276622 GTTTGGGGAGCTCCTAGTCA 58.723 55.000 31.36 20.44 35.95 3.41
69 70 0.175989 CGTTTGGGGAGCTCCTAGTC 59.824 60.000 31.36 15.13 35.95 2.59
70 71 0.252103 TCGTTTGGGGAGCTCCTAGT 60.252 55.000 31.36 0.00 35.95 2.57
71 72 1.123928 ATCGTTTGGGGAGCTCCTAG 58.876 55.000 31.36 15.96 35.95 3.02
72 73 1.485066 GAATCGTTTGGGGAGCTCCTA 59.515 52.381 31.36 18.38 35.95 2.94
73 74 0.253327 GAATCGTTTGGGGAGCTCCT 59.747 55.000 31.36 9.01 35.95 3.69
74 75 0.748367 GGAATCGTTTGGGGAGCTCC 60.748 60.000 25.59 25.59 0.00 4.70
75 76 0.035439 TGGAATCGTTTGGGGAGCTC 60.035 55.000 4.71 4.71 0.00 4.09
76 77 0.322546 GTGGAATCGTTTGGGGAGCT 60.323 55.000 0.00 0.00 0.00 4.09
77 78 0.608035 TGTGGAATCGTTTGGGGAGC 60.608 55.000 0.00 0.00 0.00 4.70
78 79 1.165270 GTGTGGAATCGTTTGGGGAG 58.835 55.000 0.00 0.00 0.00 4.30
79 80 0.474614 TGTGTGGAATCGTTTGGGGA 59.525 50.000 0.00 0.00 0.00 4.81
80 81 0.881118 CTGTGTGGAATCGTTTGGGG 59.119 55.000 0.00 0.00 0.00 4.96
81 82 0.240945 GCTGTGTGGAATCGTTTGGG 59.759 55.000 0.00 0.00 0.00 4.12
82 83 0.240945 GGCTGTGTGGAATCGTTTGG 59.759 55.000 0.00 0.00 0.00 3.28
83 84 0.240945 GGGCTGTGTGGAATCGTTTG 59.759 55.000 0.00 0.00 0.00 2.93
84 85 0.179004 TGGGCTGTGTGGAATCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
85 86 0.179004 TTGGGCTGTGTGGAATCGTT 60.179 50.000 0.00 0.00 0.00 3.85
86 87 0.889186 GTTGGGCTGTGTGGAATCGT 60.889 55.000 0.00 0.00 0.00 3.73
87 88 0.606401 AGTTGGGCTGTGTGGAATCG 60.606 55.000 0.00 0.00 0.00 3.34
88 89 1.168714 GAGTTGGGCTGTGTGGAATC 58.831 55.000 0.00 0.00 0.00 2.52
89 90 0.478072 TGAGTTGGGCTGTGTGGAAT 59.522 50.000 0.00 0.00 0.00 3.01
90 91 0.465460 GTGAGTTGGGCTGTGTGGAA 60.465 55.000 0.00 0.00 0.00 3.53
91 92 1.148273 GTGAGTTGGGCTGTGTGGA 59.852 57.895 0.00 0.00 0.00 4.02
92 93 1.898574 GGTGAGTTGGGCTGTGTGG 60.899 63.158 0.00 0.00 0.00 4.17
93 94 1.898574 GGGTGAGTTGGGCTGTGTG 60.899 63.158 0.00 0.00 0.00 3.82
94 95 2.515901 GGGTGAGTTGGGCTGTGT 59.484 61.111 0.00 0.00 0.00 3.72
95 96 2.282462 GGGGTGAGTTGGGCTGTG 60.282 66.667 0.00 0.00 0.00 3.66
96 97 3.580319 GGGGGTGAGTTGGGCTGT 61.580 66.667 0.00 0.00 0.00 4.40
97 98 2.655077 TTTGGGGGTGAGTTGGGCTG 62.655 60.000 0.00 0.00 0.00 4.85
98 99 1.955458 TTTTGGGGGTGAGTTGGGCT 61.955 55.000 0.00 0.00 0.00 5.19
99 100 0.835971 ATTTTGGGGGTGAGTTGGGC 60.836 55.000 0.00 0.00 0.00 5.36
100 101 0.975887 CATTTTGGGGGTGAGTTGGG 59.024 55.000 0.00 0.00 0.00 4.12
101 102 1.618343 GTCATTTTGGGGGTGAGTTGG 59.382 52.381 0.00 0.00 0.00 3.77
102 103 2.035832 GTGTCATTTTGGGGGTGAGTTG 59.964 50.000 0.00 0.00 0.00 3.16
103 104 2.316108 GTGTCATTTTGGGGGTGAGTT 58.684 47.619 0.00 0.00 0.00 3.01
104 105 1.216678 TGTGTCATTTTGGGGGTGAGT 59.783 47.619 0.00 0.00 0.00 3.41
105 106 1.888512 CTGTGTCATTTTGGGGGTGAG 59.111 52.381 0.00 0.00 0.00 3.51
106 107 1.496857 TCTGTGTCATTTTGGGGGTGA 59.503 47.619 0.00 0.00 0.00 4.02
107 108 1.993956 TCTGTGTCATTTTGGGGGTG 58.006 50.000 0.00 0.00 0.00 4.61
108 109 2.765689 TTCTGTGTCATTTTGGGGGT 57.234 45.000 0.00 0.00 0.00 4.95
109 110 4.414337 TTTTTCTGTGTCATTTTGGGGG 57.586 40.909 0.00 0.00 0.00 5.40
131 132 9.090692 CTTTGAGATGTGTGATGTTTTCTTTTT 57.909 29.630 0.00 0.00 0.00 1.94
132 133 7.223387 GCTTTGAGATGTGTGATGTTTTCTTTT 59.777 33.333 0.00 0.00 0.00 2.27
133 134 6.698766 GCTTTGAGATGTGTGATGTTTTCTTT 59.301 34.615 0.00 0.00 0.00 2.52
134 135 6.183360 TGCTTTGAGATGTGTGATGTTTTCTT 60.183 34.615 0.00 0.00 0.00 2.52
135 136 5.300034 TGCTTTGAGATGTGTGATGTTTTCT 59.700 36.000 0.00 0.00 0.00 2.52
136 137 5.522456 TGCTTTGAGATGTGTGATGTTTTC 58.478 37.500 0.00 0.00 0.00 2.29
137 138 5.300034 TCTGCTTTGAGATGTGTGATGTTTT 59.700 36.000 0.00 0.00 0.00 2.43
138 139 4.823442 TCTGCTTTGAGATGTGTGATGTTT 59.177 37.500 0.00 0.00 0.00 2.83
139 140 4.392047 TCTGCTTTGAGATGTGTGATGTT 58.608 39.130 0.00 0.00 0.00 2.71
140 141 4.011966 TCTGCTTTGAGATGTGTGATGT 57.988 40.909 0.00 0.00 0.00 3.06
141 142 5.562506 ATTCTGCTTTGAGATGTGTGATG 57.437 39.130 0.00 0.00 0.00 3.07
142 143 5.105877 CCAATTCTGCTTTGAGATGTGTGAT 60.106 40.000 0.00 0.00 0.00 3.06
143 144 4.216902 CCAATTCTGCTTTGAGATGTGTGA 59.783 41.667 0.00 0.00 0.00 3.58
144 145 4.482386 CCAATTCTGCTTTGAGATGTGTG 58.518 43.478 0.00 0.00 0.00 3.82
145 146 3.508793 CCCAATTCTGCTTTGAGATGTGT 59.491 43.478 0.00 0.00 0.00 3.72
146 147 3.508793 ACCCAATTCTGCTTTGAGATGTG 59.491 43.478 0.00 0.00 0.00 3.21
147 148 3.508793 CACCCAATTCTGCTTTGAGATGT 59.491 43.478 0.00 0.00 0.00 3.06
148 149 3.119245 CCACCCAATTCTGCTTTGAGATG 60.119 47.826 0.00 0.00 0.00 2.90
149 150 3.094572 CCACCCAATTCTGCTTTGAGAT 58.905 45.455 0.00 0.00 0.00 2.75
150 151 2.517959 CCACCCAATTCTGCTTTGAGA 58.482 47.619 0.00 0.00 0.00 3.27
151 152 1.067354 GCCACCCAATTCTGCTTTGAG 60.067 52.381 0.00 0.00 0.00 3.02
152 153 0.968405 GCCACCCAATTCTGCTTTGA 59.032 50.000 0.00 0.00 0.00 2.69
153 154 0.037046 GGCCACCCAATTCTGCTTTG 60.037 55.000 0.00 0.00 0.00 2.77
154 155 0.471591 TGGCCACCCAATTCTGCTTT 60.472 50.000 0.00 0.00 38.46 3.51
155 156 1.155859 TGGCCACCCAATTCTGCTT 59.844 52.632 0.00 0.00 38.46 3.91
156 157 1.607467 GTGGCCACCCAATTCTGCT 60.607 57.895 26.31 0.00 44.33 4.24
157 158 1.470996 TTGTGGCCACCCAATTCTGC 61.471 55.000 32.62 4.42 44.33 4.26
158 159 1.047002 TTTGTGGCCACCCAATTCTG 58.953 50.000 32.62 0.00 44.33 3.02
159 160 1.799933 TTTTGTGGCCACCCAATTCT 58.200 45.000 32.62 0.00 44.33 2.40
160 161 2.698803 GATTTTGTGGCCACCCAATTC 58.301 47.619 32.62 23.39 44.33 2.17
161 162 1.001860 CGATTTTGTGGCCACCCAATT 59.998 47.619 32.62 20.04 44.33 2.32
162 163 0.607620 CGATTTTGTGGCCACCCAAT 59.392 50.000 32.62 27.33 44.33 3.16
163 164 0.468214 TCGATTTTGTGGCCACCCAA 60.468 50.000 32.62 24.06 44.33 4.12
164 165 0.251564 ATCGATTTTGTGGCCACCCA 60.252 50.000 32.62 17.08 39.32 4.51
165 166 0.894835 AATCGATTTTGTGGCCACCC 59.105 50.000 32.62 10.22 0.00 4.61
166 167 1.543802 TCAATCGATTTTGTGGCCACC 59.456 47.619 32.62 15.85 0.00 4.61
167 168 2.228822 AGTCAATCGATTTTGTGGCCAC 59.771 45.455 29.67 29.67 0.00 5.01
168 169 2.513753 AGTCAATCGATTTTGTGGCCA 58.486 42.857 8.21 0.00 0.00 5.36
169 170 3.065371 CCTAGTCAATCGATTTTGTGGCC 59.935 47.826 8.21 0.00 0.00 5.36
170 171 3.938963 TCCTAGTCAATCGATTTTGTGGC 59.061 43.478 8.21 0.00 0.00 5.01
171 172 4.034510 GCTCCTAGTCAATCGATTTTGTGG 59.965 45.833 8.21 7.64 0.00 4.17
172 173 4.872691 AGCTCCTAGTCAATCGATTTTGTG 59.127 41.667 8.21 0.00 0.00 3.33
173 174 5.091261 AGCTCCTAGTCAATCGATTTTGT 57.909 39.130 8.21 0.00 0.00 2.83
174 175 4.509600 GGAGCTCCTAGTCAATCGATTTTG 59.490 45.833 26.25 0.00 0.00 2.44
175 176 4.443598 GGGAGCTCCTAGTCAATCGATTTT 60.444 45.833 31.36 0.00 35.95 1.82
176 177 3.070302 GGGAGCTCCTAGTCAATCGATTT 59.930 47.826 31.36 0.00 35.95 2.17
177 178 2.630580 GGGAGCTCCTAGTCAATCGATT 59.369 50.000 31.36 4.39 35.95 3.34
178 179 2.243810 GGGAGCTCCTAGTCAATCGAT 58.756 52.381 31.36 0.00 35.95 3.59
179 180 1.693627 GGGAGCTCCTAGTCAATCGA 58.306 55.000 31.36 0.00 35.95 3.59
180 181 0.676736 GGGGAGCTCCTAGTCAATCG 59.323 60.000 31.36 0.00 35.95 3.34
181 182 1.794714 TGGGGAGCTCCTAGTCAATC 58.205 55.000 31.36 12.50 35.95 2.67
182 183 2.239907 GTTTGGGGAGCTCCTAGTCAAT 59.760 50.000 31.36 0.00 35.95 2.57
183 184 1.628846 GTTTGGGGAGCTCCTAGTCAA 59.371 52.381 31.36 24.22 35.95 3.18
184 185 1.276622 GTTTGGGGAGCTCCTAGTCA 58.723 55.000 31.36 20.44 35.95 3.41
185 186 0.175989 CGTTTGGGGAGCTCCTAGTC 59.824 60.000 31.36 15.13 35.95 2.59
186 187 0.252103 TCGTTTGGGGAGCTCCTAGT 60.252 55.000 31.36 0.00 35.95 2.57
187 188 1.123928 ATCGTTTGGGGAGCTCCTAG 58.876 55.000 31.36 15.96 35.95 3.02
188 189 1.485066 GAATCGTTTGGGGAGCTCCTA 59.515 52.381 31.36 18.38 35.95 2.94
189 190 0.253327 GAATCGTTTGGGGAGCTCCT 59.747 55.000 31.36 9.01 35.95 3.69
190 191 0.748367 GGAATCGTTTGGGGAGCTCC 60.748 60.000 25.59 25.59 0.00 4.70
191 192 0.035439 TGGAATCGTTTGGGGAGCTC 60.035 55.000 4.71 4.71 0.00 4.09
192 193 0.322546 GTGGAATCGTTTGGGGAGCT 60.323 55.000 0.00 0.00 0.00 4.09
193 194 0.608035 TGTGGAATCGTTTGGGGAGC 60.608 55.000 0.00 0.00 0.00 4.70
194 195 1.165270 GTGTGGAATCGTTTGGGGAG 58.835 55.000 0.00 0.00 0.00 4.30
195 196 0.474614 TGTGTGGAATCGTTTGGGGA 59.525 50.000 0.00 0.00 0.00 4.81
196 197 0.881118 CTGTGTGGAATCGTTTGGGG 59.119 55.000 0.00 0.00 0.00 4.96
197 198 0.240945 GCTGTGTGGAATCGTTTGGG 59.759 55.000 0.00 0.00 0.00 4.12
198 199 0.240945 GGCTGTGTGGAATCGTTTGG 59.759 55.000 0.00 0.00 0.00 3.28
199 200 0.240945 GGGCTGTGTGGAATCGTTTG 59.759 55.000 0.00 0.00 0.00 2.93
200 201 0.179004 TGGGCTGTGTGGAATCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
201 202 0.179004 TTGGGCTGTGTGGAATCGTT 60.179 50.000 0.00 0.00 0.00 3.85
202 203 0.889186 GTTGGGCTGTGTGGAATCGT 60.889 55.000 0.00 0.00 0.00 3.73
203 204 0.606401 AGTTGGGCTGTGTGGAATCG 60.606 55.000 0.00 0.00 0.00 3.34
204 205 1.168714 GAGTTGGGCTGTGTGGAATC 58.831 55.000 0.00 0.00 0.00 2.52
205 206 0.478072 TGAGTTGGGCTGTGTGGAAT 59.522 50.000 0.00 0.00 0.00 3.01
206 207 0.465460 GTGAGTTGGGCTGTGTGGAA 60.465 55.000 0.00 0.00 0.00 3.53
207 208 1.148273 GTGAGTTGGGCTGTGTGGA 59.852 57.895 0.00 0.00 0.00 4.02
208 209 1.898574 GGTGAGTTGGGCTGTGTGG 60.899 63.158 0.00 0.00 0.00 4.17
209 210 1.898574 GGGTGAGTTGGGCTGTGTG 60.899 63.158 0.00 0.00 0.00 3.82
210 211 2.515901 GGGTGAGTTGGGCTGTGT 59.484 61.111 0.00 0.00 0.00 3.72
211 212 2.282462 GGGGTGAGTTGGGCTGTG 60.282 66.667 0.00 0.00 0.00 3.66
212 213 3.580319 GGGGGTGAGTTGGGCTGT 61.580 66.667 0.00 0.00 0.00 4.40
213 214 2.655077 TTTGGGGGTGAGTTGGGCTG 62.655 60.000 0.00 0.00 0.00 4.85
214 215 1.955458 TTTTGGGGGTGAGTTGGGCT 61.955 55.000 0.00 0.00 0.00 5.19
215 216 0.835971 ATTTTGGGGGTGAGTTGGGC 60.836 55.000 0.00 0.00 0.00 5.36
216 217 0.975887 CATTTTGGGGGTGAGTTGGG 59.024 55.000 0.00 0.00 0.00 4.12
217 218 1.618343 GTCATTTTGGGGGTGAGTTGG 59.382 52.381 0.00 0.00 0.00 3.77
218 219 2.035832 GTGTCATTTTGGGGGTGAGTTG 59.964 50.000 0.00 0.00 0.00 3.16
219 220 2.316108 GTGTCATTTTGGGGGTGAGTT 58.684 47.619 0.00 0.00 0.00 3.01
220 221 1.216678 TGTGTCATTTTGGGGGTGAGT 59.783 47.619 0.00 0.00 0.00 3.41
221 222 1.888512 CTGTGTCATTTTGGGGGTGAG 59.111 52.381 0.00 0.00 0.00 3.51
222 223 1.496857 TCTGTGTCATTTTGGGGGTGA 59.503 47.619 0.00 0.00 0.00 4.02
223 224 1.993956 TCTGTGTCATTTTGGGGGTG 58.006 50.000 0.00 0.00 0.00 4.61
224 225 2.765689 TTCTGTGTCATTTTGGGGGT 57.234 45.000 0.00 0.00 0.00 4.95
225 226 4.414337 TTTTTCTGTGTCATTTTGGGGG 57.586 40.909 0.00 0.00 0.00 5.40
248 249 9.034544 GCTTTGAGATGTGTAATGTTTTCTTTT 57.965 29.630 0.00 0.00 0.00 2.27
249 250 8.196771 TGCTTTGAGATGTGTAATGTTTTCTTT 58.803 29.630 0.00 0.00 0.00 2.52
250 251 7.715657 TGCTTTGAGATGTGTAATGTTTTCTT 58.284 30.769 0.00 0.00 0.00 2.52
251 252 7.229306 TCTGCTTTGAGATGTGTAATGTTTTCT 59.771 33.333 0.00 0.00 0.00 2.52
252 253 7.362662 TCTGCTTTGAGATGTGTAATGTTTTC 58.637 34.615 0.00 0.00 0.00 2.29
253 254 7.275888 TCTGCTTTGAGATGTGTAATGTTTT 57.724 32.000 0.00 0.00 0.00 2.43
254 255 6.882610 TCTGCTTTGAGATGTGTAATGTTT 57.117 33.333 0.00 0.00 0.00 2.83
255 256 6.882610 TTCTGCTTTGAGATGTGTAATGTT 57.117 33.333 0.00 0.00 0.00 2.71
256 257 6.183360 CGATTCTGCTTTGAGATGTGTAATGT 60.183 38.462 0.00 0.00 0.00 2.71
257 258 6.036408 TCGATTCTGCTTTGAGATGTGTAATG 59.964 38.462 0.00 0.00 0.00 1.90
258 259 6.108687 TCGATTCTGCTTTGAGATGTGTAAT 58.891 36.000 0.00 0.00 0.00 1.89
259 260 5.478407 TCGATTCTGCTTTGAGATGTGTAA 58.522 37.500 0.00 0.00 0.00 2.41
260 261 5.072040 TCGATTCTGCTTTGAGATGTGTA 57.928 39.130 0.00 0.00 0.00 2.90
261 262 3.930336 TCGATTCTGCTTTGAGATGTGT 58.070 40.909 0.00 0.00 0.00 3.72
262 263 3.931468 ACTCGATTCTGCTTTGAGATGTG 59.069 43.478 0.00 0.00 0.00 3.21
263 264 3.931468 CACTCGATTCTGCTTTGAGATGT 59.069 43.478 0.00 0.00 0.00 3.06
264 265 3.309138 CCACTCGATTCTGCTTTGAGATG 59.691 47.826 0.00 0.00 0.00 2.90
265 266 3.529533 CCACTCGATTCTGCTTTGAGAT 58.470 45.455 0.00 0.00 0.00 2.75
266 267 2.932622 GCCACTCGATTCTGCTTTGAGA 60.933 50.000 0.00 0.00 0.00 3.27
267 268 1.396301 GCCACTCGATTCTGCTTTGAG 59.604 52.381 0.00 0.00 0.00 3.02
268 269 1.442769 GCCACTCGATTCTGCTTTGA 58.557 50.000 0.00 0.00 0.00 2.69
269 270 0.449388 GGCCACTCGATTCTGCTTTG 59.551 55.000 0.00 0.00 0.00 2.77
270 271 0.036732 TGGCCACTCGATTCTGCTTT 59.963 50.000 0.00 0.00 0.00 3.51
271 272 0.674895 GTGGCCACTCGATTCTGCTT 60.675 55.000 29.12 0.00 0.00 3.91
272 273 1.078848 GTGGCCACTCGATTCTGCT 60.079 57.895 29.12 0.00 0.00 4.24
273 274 0.955428 TTGTGGCCACTCGATTCTGC 60.955 55.000 34.75 6.57 0.00 4.26
274 275 1.522668 TTTGTGGCCACTCGATTCTG 58.477 50.000 34.75 0.00 0.00 3.02
275 276 2.270352 TTTTGTGGCCACTCGATTCT 57.730 45.000 34.75 0.00 0.00 2.40
276 277 2.476185 CGATTTTGTGGCCACTCGATTC 60.476 50.000 34.75 22.29 0.00 2.52
277 278 1.468520 CGATTTTGTGGCCACTCGATT 59.531 47.619 34.75 16.77 0.00 3.34
278 279 1.086696 CGATTTTGTGGCCACTCGAT 58.913 50.000 34.75 24.03 0.00 3.59
279 280 0.034198 TCGATTTTGTGGCCACTCGA 59.966 50.000 32.28 32.28 33.23 4.04
280 281 1.086696 ATCGATTTTGTGGCCACTCG 58.913 50.000 34.75 31.83 0.00 4.18
281 282 2.487762 TCAATCGATTTTGTGGCCACTC 59.512 45.455 34.75 22.87 0.00 3.51
282 283 2.228822 GTCAATCGATTTTGTGGCCACT 59.771 45.455 34.75 16.57 0.00 4.00
283 284 2.595386 GTCAATCGATTTTGTGGCCAC 58.405 47.619 29.67 29.67 0.00 5.01
284 285 1.543802 GGTCAATCGATTTTGTGGCCA 59.456 47.619 8.21 0.00 0.00 5.36
285 286 1.135112 GGGTCAATCGATTTTGTGGCC 60.135 52.381 8.21 8.98 0.00 5.36
286 287 1.543802 TGGGTCAATCGATTTTGTGGC 59.456 47.619 8.21 0.00 0.00 5.01
287 288 3.932545 TTGGGTCAATCGATTTTGTGG 57.067 42.857 8.21 0.00 0.00 4.17
288 289 7.312154 TCTTATTTGGGTCAATCGATTTTGTG 58.688 34.615 8.21 0.00 0.00 3.33
289 290 7.461182 TCTTATTTGGGTCAATCGATTTTGT 57.539 32.000 8.21 0.00 0.00 2.83
290 291 8.931385 ATTCTTATTTGGGTCAATCGATTTTG 57.069 30.769 8.21 0.00 0.00 2.44
291 292 9.942850 AAATTCTTATTTGGGTCAATCGATTTT 57.057 25.926 8.21 0.00 32.79 1.82
292 293 9.942850 AAAATTCTTATTTGGGTCAATCGATTT 57.057 25.926 8.21 0.00 34.27 2.17
293 294 9.586435 GAAAATTCTTATTTGGGTCAATCGATT 57.414 29.630 4.39 4.39 34.27 3.34
294 295 8.748412 TGAAAATTCTTATTTGGGTCAATCGAT 58.252 29.630 0.00 0.00 34.27 3.59
295 296 8.116651 TGAAAATTCTTATTTGGGTCAATCGA 57.883 30.769 0.00 0.00 34.27 3.59
296 297 7.009540 GCTGAAAATTCTTATTTGGGTCAATCG 59.990 37.037 0.00 0.00 34.27 3.34
297 298 8.037166 AGCTGAAAATTCTTATTTGGGTCAATC 58.963 33.333 0.00 0.00 34.27 2.67
298 299 7.820872 CAGCTGAAAATTCTTATTTGGGTCAAT 59.179 33.333 8.42 0.00 34.27 2.57
299 300 7.015098 TCAGCTGAAAATTCTTATTTGGGTCAA 59.985 33.333 15.67 0.00 34.27 3.18
300 301 6.493115 TCAGCTGAAAATTCTTATTTGGGTCA 59.507 34.615 15.67 0.00 34.27 4.02
301 302 6.808704 GTCAGCTGAAAATTCTTATTTGGGTC 59.191 38.462 20.19 0.00 34.27 4.46
302 303 6.494835 AGTCAGCTGAAAATTCTTATTTGGGT 59.505 34.615 20.19 0.00 34.27 4.51
303 304 6.810182 CAGTCAGCTGAAAATTCTTATTTGGG 59.190 38.462 20.19 0.00 45.28 4.12
304 305 7.807687 CAGTCAGCTGAAAATTCTTATTTGG 57.192 36.000 20.19 0.00 45.28 3.28
319 320 7.758980 CCACTTTAGCTATATATCAGTCAGCTG 59.241 40.741 7.63 7.63 42.34 4.24
320 321 7.578571 GCCACTTTAGCTATATATCAGTCAGCT 60.579 40.741 10.89 10.89 44.43 4.24
321 322 6.533367 GCCACTTTAGCTATATATCAGTCAGC 59.467 42.308 0.00 0.00 0.00 4.26
322 323 6.749578 CGCCACTTTAGCTATATATCAGTCAG 59.250 42.308 0.00 0.00 0.00 3.51
323 324 6.208797 ACGCCACTTTAGCTATATATCAGTCA 59.791 38.462 0.00 0.00 0.00 3.41
324 325 6.622549 ACGCCACTTTAGCTATATATCAGTC 58.377 40.000 0.00 0.00 0.00 3.51
325 326 6.591750 ACGCCACTTTAGCTATATATCAGT 57.408 37.500 0.00 0.00 0.00 3.41
326 327 5.739630 CGACGCCACTTTAGCTATATATCAG 59.260 44.000 0.00 0.00 0.00 2.90
327 328 5.182570 ACGACGCCACTTTAGCTATATATCA 59.817 40.000 0.00 0.00 0.00 2.15
328 329 5.638783 ACGACGCCACTTTAGCTATATATC 58.361 41.667 0.00 0.00 0.00 1.63
329 330 5.392811 GGACGACGCCACTTTAGCTATATAT 60.393 44.000 0.00 0.00 0.00 0.86
330 331 4.083110 GGACGACGCCACTTTAGCTATATA 60.083 45.833 0.00 0.00 0.00 0.86
331 332 3.305199 GGACGACGCCACTTTAGCTATAT 60.305 47.826 0.00 0.00 0.00 0.86
332 333 2.033801 GGACGACGCCACTTTAGCTATA 59.966 50.000 0.00 0.00 0.00 1.31
333 334 1.202382 GGACGACGCCACTTTAGCTAT 60.202 52.381 0.00 0.00 0.00 2.97
334 335 0.171903 GGACGACGCCACTTTAGCTA 59.828 55.000 0.00 0.00 0.00 3.32
335 336 1.080025 GGACGACGCCACTTTAGCT 60.080 57.895 0.00 0.00 0.00 3.32
336 337 1.373748 TGGACGACGCCACTTTAGC 60.374 57.895 6.88 0.00 31.66 3.09
337 338 4.979204 TGGACGACGCCACTTTAG 57.021 55.556 6.88 0.00 31.66 1.85
409 426 0.166597 GTTGGTAAGTAAACGCGGGC 59.833 55.000 12.47 0.00 0.00 6.13
435 452 3.905493 TTGGAAATAAACCTGACCCCA 57.095 42.857 0.00 0.00 0.00 4.96
505 527 1.067669 TCGATGATCCACTAGCTGTGC 59.932 52.381 0.00 0.00 44.92 4.57
692 2113 2.029964 GAAGGGACGTCGCCAACA 59.970 61.111 26.94 0.00 0.00 3.33
732 2183 2.879462 GACGATGGCGACGGTGAC 60.879 66.667 0.00 0.00 41.64 3.67
897 3989 4.262678 GGTAGAGAGCCTTGTGTTTCTCTT 60.263 45.833 8.02 0.00 42.72 2.85
919 4013 2.517402 AGCTCGGAGGCGTAGAGG 60.517 66.667 7.20 0.00 37.29 3.69
972 4068 2.803670 CTGTGGTCGTACGCGTGG 60.804 66.667 24.59 14.15 39.49 4.94
1220 4343 3.357079 CCACCGTCACTGCCTTGC 61.357 66.667 0.00 0.00 0.00 4.01
1264 4387 0.905357 GGCTGTGGCTTCTCCTCTAA 59.095 55.000 0.00 0.00 38.73 2.10
1364 4506 1.597461 GAACCCTCCTTCCTCCACG 59.403 63.158 0.00 0.00 0.00 4.94
1754 4907 9.787532 CACTTGTTGAAATCTCTAAAAAGACAA 57.212 29.630 0.00 0.00 0.00 3.18
1755 4908 9.173021 TCACTTGTTGAAATCTCTAAAAAGACA 57.827 29.630 0.00 0.00 0.00 3.41
1756 4909 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
1757 4910 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
1760 4913 8.761497 CGTAGTCACTTGTTGAAATCTCTAAAA 58.239 33.333 0.00 0.00 35.39 1.52
1761 4914 7.924412 ACGTAGTCACTTGTTGAAATCTCTAAA 59.076 33.333 0.00 0.00 29.74 1.85
1762 4915 7.431249 ACGTAGTCACTTGTTGAAATCTCTAA 58.569 34.615 0.00 0.00 29.74 2.10
1763 4916 6.978338 ACGTAGTCACTTGTTGAAATCTCTA 58.022 36.000 0.00 0.00 29.74 2.43
1764 4917 5.844004 ACGTAGTCACTTGTTGAAATCTCT 58.156 37.500 0.00 0.00 29.74 3.10
1765 4918 6.183359 CGTACGTAGTCACTTGTTGAAATCTC 60.183 42.308 7.22 0.00 43.93 2.75
1766 4919 5.628193 CGTACGTAGTCACTTGTTGAAATCT 59.372 40.000 7.22 0.00 43.93 2.40
1767 4920 5.626543 TCGTACGTAGTCACTTGTTGAAATC 59.373 40.000 16.05 0.00 43.93 2.17
1768 4921 5.522456 TCGTACGTAGTCACTTGTTGAAAT 58.478 37.500 16.05 0.00 43.93 2.17
1769 4922 4.919206 TCGTACGTAGTCACTTGTTGAAA 58.081 39.130 16.05 0.00 43.93 2.69
1770 4923 4.550577 TCGTACGTAGTCACTTGTTGAA 57.449 40.909 16.05 0.00 43.93 2.69
1771 4924 4.530388 CTTCGTACGTAGTCACTTGTTGA 58.470 43.478 16.05 0.00 43.93 3.18
1772 4925 3.119136 GCTTCGTACGTAGTCACTTGTTG 59.881 47.826 20.85 0.00 43.93 3.33
1773 4926 3.243168 TGCTTCGTACGTAGTCACTTGTT 60.243 43.478 20.85 0.00 43.93 2.83
1774 4927 2.291465 TGCTTCGTACGTAGTCACTTGT 59.709 45.455 20.85 0.00 43.93 3.16
1775 4928 2.924903 TGCTTCGTACGTAGTCACTTG 58.075 47.619 20.85 0.00 43.93 3.16
1776 4929 3.631145 TTGCTTCGTACGTAGTCACTT 57.369 42.857 20.85 0.00 43.93 3.16
1777 4930 3.631145 TTTGCTTCGTACGTAGTCACT 57.369 42.857 20.85 0.00 43.93 3.41
1778 4931 4.383649 TCATTTTGCTTCGTACGTAGTCAC 59.616 41.667 20.85 7.28 43.93 3.67
1779 4932 4.548494 TCATTTTGCTTCGTACGTAGTCA 58.452 39.130 20.85 16.25 43.93 3.41
1780 4933 4.620184 ACTCATTTTGCTTCGTACGTAGTC 59.380 41.667 20.85 14.22 43.93 2.59
1782 4935 4.619760 TCACTCATTTTGCTTCGTACGTAG 59.380 41.667 16.60 16.60 0.00 3.51
1783 4936 4.548494 TCACTCATTTTGCTTCGTACGTA 58.452 39.130 16.05 4.53 0.00 3.57
1784 4937 3.386486 TCACTCATTTTGCTTCGTACGT 58.614 40.909 16.05 0.00 0.00 3.57
1785 4938 4.383774 TTCACTCATTTTGCTTCGTACG 57.616 40.909 9.53 9.53 0.00 3.67
1786 4939 5.106712 TGGATTCACTCATTTTGCTTCGTAC 60.107 40.000 0.00 0.00 0.00 3.67
1787 4940 5.000591 TGGATTCACTCATTTTGCTTCGTA 58.999 37.500 0.00 0.00 0.00 3.43
1788 4941 3.820467 TGGATTCACTCATTTTGCTTCGT 59.180 39.130 0.00 0.00 0.00 3.85
1789 4942 4.424061 TGGATTCACTCATTTTGCTTCG 57.576 40.909 0.00 0.00 0.00 3.79
1790 4943 6.218746 AGTTTGGATTCACTCATTTTGCTTC 58.781 36.000 0.00 0.00 0.00 3.86
1791 4944 6.165700 AGTTTGGATTCACTCATTTTGCTT 57.834 33.333 0.00 0.00 0.00 3.91
1792 4945 5.796424 AGTTTGGATTCACTCATTTTGCT 57.204 34.783 0.00 0.00 0.00 3.91
1793 4946 6.849588 AAAGTTTGGATTCACTCATTTTGC 57.150 33.333 0.00 0.00 0.00 3.68
1830 4983 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
1831 4984 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
1847 5000 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
1848 5001 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
1865 5018 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
1866 5019 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1867 5020 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1868 5021 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1869 5022 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1870 5023 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1871 5024 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1872 5025 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1873 5026 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1874 5027 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
1875 5028 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1876 5029 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1877 5030 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1878 5031 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1879 5032 4.803329 ATAGTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
1880 5033 4.166725 TCAATAGTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
1881 5034 3.053095 TCAATAGTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
1882 5035 3.294214 TCAATAGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
1883 5036 5.532664 AATCAATAGTACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
1884 5037 6.553852 ACATAATCAATAGTACTCCCTCCGTT 59.446 38.462 0.00 0.00 0.00 4.44
1885 5038 6.075984 ACATAATCAATAGTACTCCCTCCGT 58.924 40.000 0.00 0.00 0.00 4.69
1886 5039 6.591750 ACATAATCAATAGTACTCCCTCCG 57.408 41.667 0.00 0.00 0.00 4.63
1887 5040 8.035984 GCTTACATAATCAATAGTACTCCCTCC 58.964 40.741 0.00 0.00 0.00 4.30
1888 5041 8.808092 AGCTTACATAATCAATAGTACTCCCTC 58.192 37.037 0.00 0.00 0.00 4.30
1889 5042 8.728596 AGCTTACATAATCAATAGTACTCCCT 57.271 34.615 0.00 0.00 0.00 4.20
1890 5043 8.035984 GGAGCTTACATAATCAATAGTACTCCC 58.964 40.741 0.00 0.00 33.03 4.30
1891 5044 7.755822 CGGAGCTTACATAATCAATAGTACTCC 59.244 40.741 0.00 0.00 35.27 3.85
1892 5045 8.676454 CGGAGCTTACATAATCAATAGTACTC 57.324 38.462 0.00 0.00 0.00 2.59
1917 5070 7.864307 GATAATTGATTATCAAACCAGCAGC 57.136 36.000 11.88 0.00 44.96 5.25
2344 5505 1.871080 ACGTACGTATACTCGGGAGG 58.129 55.000 21.41 0.00 34.94 4.30
2345 5506 5.597813 ATTAACGTACGTATACTCGGGAG 57.402 43.478 23.12 0.00 34.94 4.30
2346 5507 5.118050 CGTATTAACGTACGTATACTCGGGA 59.882 44.000 26.66 8.73 44.21 5.14
2347 5508 5.305812 CGTATTAACGTACGTATACTCGGG 58.694 45.833 26.66 14.84 44.21 5.14
2362 5523 4.436332 CCCCAAGACCTGTACGTATTAAC 58.564 47.826 0.00 0.00 0.00 2.01
2363 5524 3.451902 CCCCCAAGACCTGTACGTATTAA 59.548 47.826 0.00 0.00 0.00 1.40
2364 5525 3.033184 CCCCCAAGACCTGTACGTATTA 58.967 50.000 0.00 0.00 0.00 0.98
2365 5526 1.835531 CCCCCAAGACCTGTACGTATT 59.164 52.381 0.00 0.00 0.00 1.89
2366 5527 1.492764 CCCCCAAGACCTGTACGTAT 58.507 55.000 0.00 0.00 0.00 3.06
2367 5528 2.980541 CCCCCAAGACCTGTACGTA 58.019 57.895 0.00 0.00 0.00 3.57
2368 5529 3.801620 CCCCCAAGACCTGTACGT 58.198 61.111 0.00 0.00 0.00 3.57
2383 5544 1.438814 CGCTGATTGATTTGCCCCC 59.561 57.895 0.00 0.00 0.00 5.40
2384 5545 1.227060 GCGCTGATTGATTTGCCCC 60.227 57.895 0.00 0.00 0.00 5.80
2385 5546 1.227060 GGCGCTGATTGATTTGCCC 60.227 57.895 7.64 0.00 36.51 5.36
2386 5547 0.526954 CAGGCGCTGATTGATTTGCC 60.527 55.000 7.64 0.00 42.76 4.52
2387 5548 0.526954 CCAGGCGCTGATTGATTTGC 60.527 55.000 7.64 0.00 32.44 3.68
2388 5549 0.526954 GCCAGGCGCTGATTGATTTG 60.527 55.000 7.64 0.00 32.44 2.32
2389 5550 1.811860 GCCAGGCGCTGATTGATTT 59.188 52.632 7.64 0.00 32.44 2.17
2390 5551 3.518003 GCCAGGCGCTGATTGATT 58.482 55.556 7.64 0.00 32.44 2.57
2399 5560 0.249447 AAAACAAAAGAGCCAGGCGC 60.249 50.000 7.17 7.17 37.98 6.53
2400 5561 2.223537 AAAAACAAAAGAGCCAGGCG 57.776 45.000 5.55 0.00 0.00 5.52
2416 5577 7.009723 GGCGCCGAGATTTAATCAAAATAAAAA 59.990 33.333 12.58 0.00 37.93 1.94
2417 5578 6.474102 GGCGCCGAGATTTAATCAAAATAAAA 59.526 34.615 12.58 0.00 37.93 1.52
2418 5579 5.974751 GGCGCCGAGATTTAATCAAAATAAA 59.025 36.000 12.58 0.00 37.93 1.40
2419 5580 5.298276 AGGCGCCGAGATTTAATCAAAATAA 59.702 36.000 23.20 0.00 37.93 1.40
2420 5581 4.819630 AGGCGCCGAGATTTAATCAAAATA 59.180 37.500 23.20 0.00 37.93 1.40
2421 5582 3.632145 AGGCGCCGAGATTTAATCAAAAT 59.368 39.130 23.20 0.00 40.59 1.82
2422 5583 3.013921 AGGCGCCGAGATTTAATCAAAA 58.986 40.909 23.20 0.00 0.00 2.44
2423 5584 2.612212 GAGGCGCCGAGATTTAATCAAA 59.388 45.455 23.20 0.00 0.00 2.69
2424 5585 2.210116 GAGGCGCCGAGATTTAATCAA 58.790 47.619 23.20 0.00 0.00 2.57
2425 5586 1.865865 GAGGCGCCGAGATTTAATCA 58.134 50.000 23.20 0.00 0.00 2.57
2426 5587 0.784778 CGAGGCGCCGAGATTTAATC 59.215 55.000 23.20 8.75 0.00 1.75
2427 5588 2.900528 CGAGGCGCCGAGATTTAAT 58.099 52.632 23.20 0.00 0.00 1.40
2428 5589 4.412933 CGAGGCGCCGAGATTTAA 57.587 55.556 23.20 0.00 0.00 1.52
2439 5600 2.884685 CAGAAGCTGAGCGAGGCG 60.885 66.667 0.00 0.00 32.44 5.52
2440 5601 3.194308 GCAGAAGCTGAGCGAGGC 61.194 66.667 0.00 0.00 37.91 4.70
2445 5606 1.419874 CTAGCACGCAGAAGCTGAGC 61.420 60.000 0.00 0.00 41.59 4.26
2446 5607 1.419874 GCTAGCACGCAGAAGCTGAG 61.420 60.000 10.63 0.00 41.59 3.35
2447 5608 1.446792 GCTAGCACGCAGAAGCTGA 60.447 57.895 10.63 0.00 41.59 4.26
2448 5609 0.179127 TAGCTAGCACGCAGAAGCTG 60.179 55.000 18.83 0.00 44.70 4.24
2449 5610 0.102120 CTAGCTAGCACGCAGAAGCT 59.898 55.000 18.83 15.03 46.58 3.74
2450 5611 2.587574 CTAGCTAGCACGCAGAAGC 58.412 57.895 18.83 3.64 35.16 3.86
2461 5622 6.321690 TCTGTTTACTTTCCTAGGCTAGCTAG 59.678 42.308 16.84 16.84 0.00 3.42
2462 5623 6.192773 TCTGTTTACTTTCCTAGGCTAGCTA 58.807 40.000 16.26 3.42 0.00 3.32
2463 5624 5.024118 TCTGTTTACTTTCCTAGGCTAGCT 58.976 41.667 16.26 3.22 0.00 3.32
2464 5625 5.340439 TCTGTTTACTTTCCTAGGCTAGC 57.660 43.478 16.26 6.04 0.00 3.42
2465 5626 7.281100 CCAAATCTGTTTACTTTCCTAGGCTAG 59.719 40.741 14.77 14.77 0.00 3.42
2466 5627 7.110155 CCAAATCTGTTTACTTTCCTAGGCTA 58.890 38.462 2.96 0.00 0.00 3.93
2467 5628 5.946377 CCAAATCTGTTTACTTTCCTAGGCT 59.054 40.000 2.96 0.00 0.00 4.58
2468 5629 5.710567 ACCAAATCTGTTTACTTTCCTAGGC 59.289 40.000 2.96 0.00 0.00 3.93
2469 5630 6.940298 TCACCAAATCTGTTTACTTTCCTAGG 59.060 38.462 0.82 0.82 0.00 3.02
2470 5631 7.361286 GCTCACCAAATCTGTTTACTTTCCTAG 60.361 40.741 0.00 0.00 0.00 3.02
2471 5632 6.430000 GCTCACCAAATCTGTTTACTTTCCTA 59.570 38.462 0.00 0.00 0.00 2.94
2472 5633 5.241728 GCTCACCAAATCTGTTTACTTTCCT 59.758 40.000 0.00 0.00 0.00 3.36
2473 5634 5.461526 GCTCACCAAATCTGTTTACTTTCC 58.538 41.667 0.00 0.00 0.00 3.13
2474 5635 5.241728 AGGCTCACCAAATCTGTTTACTTTC 59.758 40.000 0.00 0.00 39.06 2.62
2475 5636 5.010012 CAGGCTCACCAAATCTGTTTACTTT 59.990 40.000 0.00 0.00 39.06 2.66
2476 5637 4.520492 CAGGCTCACCAAATCTGTTTACTT 59.480 41.667 0.00 0.00 39.06 2.24
2477 5638 4.074970 CAGGCTCACCAAATCTGTTTACT 58.925 43.478 0.00 0.00 39.06 2.24
2478 5639 3.191371 CCAGGCTCACCAAATCTGTTTAC 59.809 47.826 0.00 0.00 39.06 2.01
2479 5640 3.420893 CCAGGCTCACCAAATCTGTTTA 58.579 45.455 0.00 0.00 39.06 2.01
2480 5641 2.242043 CCAGGCTCACCAAATCTGTTT 58.758 47.619 0.00 0.00 39.06 2.83
2481 5642 1.915141 CCAGGCTCACCAAATCTGTT 58.085 50.000 0.00 0.00 39.06 3.16
2482 5643 0.610232 GCCAGGCTCACCAAATCTGT 60.610 55.000 3.29 0.00 39.06 3.41
2483 5644 1.318158 GGCCAGGCTCACCAAATCTG 61.318 60.000 12.43 0.00 39.06 2.90
2484 5645 1.000396 GGCCAGGCTCACCAAATCT 60.000 57.895 12.43 0.00 39.06 2.40
2485 5646 2.054453 GGGCCAGGCTCACCAAATC 61.054 63.158 12.43 0.00 39.06 2.17
2486 5647 2.037847 GGGCCAGGCTCACCAAAT 59.962 61.111 12.43 0.00 39.06 2.32
2487 5648 1.505151 TATGGGCCAGGCTCACCAAA 61.505 55.000 19.17 0.00 43.92 3.28
2488 5649 1.288508 ATATGGGCCAGGCTCACCAA 61.289 55.000 19.17 5.60 43.92 3.67
2489 5650 1.288508 AATATGGGCCAGGCTCACCA 61.289 55.000 19.17 13.88 43.92 4.17
2490 5651 0.538287 GAATATGGGCCAGGCTCACC 60.538 60.000 19.17 7.30 43.92 4.02
2491 5652 0.886490 CGAATATGGGCCAGGCTCAC 60.886 60.000 19.17 2.15 43.92 3.51
2492 5653 1.451504 CGAATATGGGCCAGGCTCA 59.548 57.895 19.06 19.06 45.75 4.26
2493 5654 1.968540 GCGAATATGGGCCAGGCTC 60.969 63.158 13.78 8.27 0.00 4.70
2494 5655 2.113986 GCGAATATGGGCCAGGCT 59.886 61.111 13.78 0.00 0.00 4.58
2495 5656 2.203337 TGCGAATATGGGCCAGGC 60.203 61.111 13.78 1.26 0.00 4.85
2496 5657 1.898574 GGTGCGAATATGGGCCAGG 60.899 63.158 13.78 0.00 0.00 4.45
2497 5658 2.253758 CGGTGCGAATATGGGCCAG 61.254 63.158 13.78 0.00 0.00 4.85
2498 5659 2.203139 CGGTGCGAATATGGGCCA 60.203 61.111 9.61 9.61 0.00 5.36
2499 5660 2.203153 ACGGTGCGAATATGGGCC 60.203 61.111 0.00 0.00 0.00 5.80
2500 5661 2.594962 CGACGGTGCGAATATGGGC 61.595 63.158 0.00 0.00 0.00 5.36
2501 5662 2.594962 GCGACGGTGCGAATATGGG 61.595 63.158 0.00 0.00 0.00 4.00
2502 5663 1.880796 TGCGACGGTGCGAATATGG 60.881 57.895 0.00 0.00 37.81 2.74
2503 5664 1.272715 GTGCGACGGTGCGAATATG 59.727 57.895 0.00 0.00 37.81 1.78
2504 5665 2.228241 CGTGCGACGGTGCGAATAT 61.228 57.895 0.00 0.00 38.08 1.28
2505 5666 2.877113 CGTGCGACGGTGCGAATA 60.877 61.111 0.00 0.00 38.08 1.75
2525 5686 1.649390 CTCTCCGGTCTCCACGTGAG 61.649 65.000 19.30 12.61 42.90 3.51
2526 5687 1.674651 CTCTCCGGTCTCCACGTGA 60.675 63.158 19.30 2.03 0.00 4.35
2527 5688 1.241990 TTCTCTCCGGTCTCCACGTG 61.242 60.000 9.08 9.08 0.00 4.49
2528 5689 0.538977 TTTCTCTCCGGTCTCCACGT 60.539 55.000 0.00 0.00 0.00 4.49
2529 5690 0.601558 TTTTCTCTCCGGTCTCCACG 59.398 55.000 0.00 0.00 0.00 4.94
2530 5691 1.066787 CCTTTTCTCTCCGGTCTCCAC 60.067 57.143 0.00 0.00 0.00 4.02
2531 5692 1.203137 TCCTTTTCTCTCCGGTCTCCA 60.203 52.381 0.00 0.00 0.00 3.86
2532 5693 1.558233 TCCTTTTCTCTCCGGTCTCC 58.442 55.000 0.00 0.00 0.00 3.71
2533 5694 3.735514 CGATTCCTTTTCTCTCCGGTCTC 60.736 52.174 0.00 0.00 0.00 3.36
2534 5695 2.166664 CGATTCCTTTTCTCTCCGGTCT 59.833 50.000 0.00 0.00 0.00 3.85
2535 5696 2.094130 ACGATTCCTTTTCTCTCCGGTC 60.094 50.000 0.00 0.00 0.00 4.79
2536 5697 1.900486 ACGATTCCTTTTCTCTCCGGT 59.100 47.619 0.00 0.00 0.00 5.28
2537 5698 2.674796 ACGATTCCTTTTCTCTCCGG 57.325 50.000 0.00 0.00 0.00 5.14
2538 5699 2.930682 GGAACGATTCCTTTTCTCTCCG 59.069 50.000 8.87 0.00 46.57 4.63
2550 5711 5.567138 ACAGGAAATCAATGGAACGATTC 57.433 39.130 0.00 0.00 30.64 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.