Multiple sequence alignment - TraesCS3B01G197600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G197600 chr3B 100.000 6942 0 0 1 6942 224962037 224955096 0.000000e+00 12820
1 TraesCS3B01G197600 chr3B 98.624 3342 40 6 1629 4965 695918362 695915022 0.000000e+00 5912
2 TraesCS3B01G197600 chr3B 98.734 3317 38 4 1639 4952 25293854 25290539 0.000000e+00 5890
3 TraesCS3B01G197600 chr3B 98.837 344 2 1 451 794 787804887 787804546 4.600000e-171 612
4 TraesCS3B01G197600 chr3B 98.011 352 5 2 454 805 51242172 51242521 1.660000e-170 610
5 TraesCS3B01G197600 chr1A 98.912 3310 34 2 1639 4946 517048470 517045161 0.000000e+00 5912
6 TraesCS3B01G197600 chr1A 92.045 88 6 1 2 88 521389478 521389565 9.460000e-24 122
7 TraesCS3B01G197600 chr2A 98.795 3320 36 4 1640 4955 676076328 676079647 0.000000e+00 5906
8 TraesCS3B01G197600 chr2A 98.793 3314 36 4 1640 4949 216529698 216533011 0.000000e+00 5895
9 TraesCS3B01G197600 chr2A 95.187 1122 49 3 4989 6109 448294275 448293158 0.000000e+00 1768
10 TraesCS3B01G197600 chr2A 94.507 801 27 6 792 1585 448295092 448294302 0.000000e+00 1219
11 TraesCS3B01G197600 chr2A 98.276 348 4 1 446 793 423776089 423776434 5.950000e-170 608
12 TraesCS3B01G197600 chr2A 95.082 183 9 0 260 442 448295272 448295090 8.810000e-74 289
13 TraesCS3B01G197600 chr2A 94.667 150 7 1 93 242 448295743 448295595 1.510000e-56 231
14 TraesCS3B01G197600 chr2A 89.691 97 8 1 2 96 284136089 284136185 9.460000e-24 122
15 TraesCS3B01G197600 chr5B 98.794 3317 37 3 1641 4954 306399042 306402358 0.000000e+00 5901
16 TraesCS3B01G197600 chr5B 98.830 342 2 1 454 795 595129154 595128815 5.950000e-170 608
17 TraesCS3B01G197600 chr5B 76.000 525 93 27 1013 1527 503116629 503116128 2.500000e-59 241
18 TraesCS3B01G197600 chr5A 98.708 3327 38 5 1639 4960 259066407 259069733 0.000000e+00 5901
19 TraesCS3B01G197600 chr5A 98.764 3318 34 5 1640 4954 174598282 174601595 0.000000e+00 5893
20 TraesCS3B01G197600 chr5A 77.686 484 83 19 1012 1489 529081007 529080543 8.870000e-69 272
21 TraesCS3B01G197600 chr7A 98.705 3321 40 3 1640 4957 477225701 477229021 0.000000e+00 5891
22 TraesCS3B01G197600 chr7A 88.450 961 108 1 4992 5949 26977634 26976674 0.000000e+00 1157
23 TraesCS3B01G197600 chr7A 88.450 961 108 2 4992 5949 27032258 27031298 0.000000e+00 1157
24 TraesCS3B01G197600 chr7A 87.959 980 110 5 4974 5948 26823240 26822264 0.000000e+00 1149
25 TraesCS3B01G197600 chr7A 90.769 520 48 0 1016 1535 27032938 27032419 0.000000e+00 695
26 TraesCS3B01G197600 chr7A 90.173 519 51 0 1017 1535 26823943 26823425 0.000000e+00 676
27 TraesCS3B01G197600 chr7A 88.679 530 60 0 1001 1530 27604636 27605165 0.000000e+00 647
28 TraesCS3B01G197600 chr7A 90.588 85 7 1 2 85 711060741 711060825 2.050000e-20 111
29 TraesCS3B01G197600 chr7A 88.043 92 8 3 2 92 412787898 412787987 9.520000e-19 106
30 TraesCS3B01G197600 chr2D 94.959 1111 47 4 4968 6078 338331191 338330090 0.000000e+00 1733
31 TraesCS3B01G197600 chr2D 94.373 853 24 13 791 1637 338332006 338331172 0.000000e+00 1288
32 TraesCS3B01G197600 chr2D 92.054 818 57 8 6128 6942 66158629 66157817 0.000000e+00 1144
33 TraesCS3B01G197600 chr2D 94.286 350 17 2 93 442 338332349 338332003 3.690000e-147 532
34 TraesCS3B01G197600 chr7D 88.706 974 106 2 4979 5949 26559477 26558505 0.000000e+00 1186
35 TraesCS3B01G197600 chr7D 88.505 983 105 5 4971 5948 25898033 25897054 0.000000e+00 1182
36 TraesCS3B01G197600 chr7D 91.728 810 60 6 6135 6940 465910006 465909200 0.000000e+00 1118
37 TraesCS3B01G197600 chr7D 87.208 985 118 8 4970 5949 26565842 26564861 0.000000e+00 1114
38 TraesCS3B01G197600 chr7D 89.720 535 55 0 1001 1535 26566509 26565975 0.000000e+00 684
39 TraesCS3B01G197600 chr7D 87.669 592 64 6 948 1532 25898730 25898141 0.000000e+00 680
40 TraesCS3B01G197600 chr7D 88.113 530 63 0 1001 1530 27243394 27243923 1.270000e-176 630
41 TraesCS3B01G197600 chr7D 84.574 564 68 16 989 1536 26560231 26559671 6.120000e-150 542
42 TraesCS3B01G197600 chr7D 73.694 536 100 31 1012 1530 8454246 8453735 3.330000e-38 171
43 TraesCS3B01G197600 chr6D 92.647 816 54 6 6130 6942 62137830 62137018 0.000000e+00 1170
44 TraesCS3B01G197600 chr6D 92.099 810 58 6 6134 6942 387996135 387995331 0.000000e+00 1136
45 TraesCS3B01G197600 chr4A 88.363 971 105 5 4982 5949 710676695 710675730 0.000000e+00 1160
46 TraesCS3B01G197600 chr4A 91.995 812 61 3 6132 6942 695550195 695549387 0.000000e+00 1136
47 TraesCS3B01G197600 chr4A 89.623 530 53 2 1004 1532 710695531 710695003 0.000000e+00 673
48 TraesCS3B01G197600 chr4A 89.225 529 57 0 1004 1532 710284829 710284301 0.000000e+00 662
49 TraesCS3B01G197600 chr4A 86.642 539 63 6 1001 1530 703651684 703652222 7.760000e-164 588
50 TraesCS3B01G197600 chr4A 88.412 233 26 1 1300 1532 710272592 710272361 5.300000e-71 279
51 TraesCS3B01G197600 chr4A 94.186 86 2 2 2 84 306601040 306601125 2.030000e-25 128
52 TraesCS3B01G197600 chr4A 89.691 97 6 2 2 95 507477237 507477142 3.400000e-23 121
53 TraesCS3B01G197600 chr4A 88.660 97 9 2 2 96 164316236 164316140 4.400000e-22 117
54 TraesCS3B01G197600 chr1D 92.289 817 56 6 6128 6942 430108026 430107215 0.000000e+00 1153
55 TraesCS3B01G197600 chr3D 91.995 812 56 6 6132 6942 553427306 553428109 0.000000e+00 1131
56 TraesCS3B01G197600 chr2B 91.801 805 62 3 6138 6942 46324179 46324979 0.000000e+00 1118
57 TraesCS3B01G197600 chr2B 84.694 588 81 8 948 1530 800172551 800171968 4.670000e-161 579
58 TraesCS3B01G197600 chrUn 91.331 819 60 11 6129 6942 338079447 338080259 0.000000e+00 1109
59 TraesCS3B01G197600 chrUn 98.844 346 2 1 449 794 262503258 262503601 3.560000e-172 616
60 TraesCS3B01G197600 chrUn 98.844 346 2 1 449 794 322126647 322126990 3.560000e-172 616
61 TraesCS3B01G197600 chr7B 98.837 344 2 1 452 795 472244071 472244412 4.600000e-171 612
62 TraesCS3B01G197600 chr4B 98.837 344 2 1 452 795 363007077 363006736 4.600000e-171 612
63 TraesCS3B01G197600 chr1B 97.727 352 6 1 448 799 605547133 605546784 7.700000e-169 604
64 TraesCS3B01G197600 chr6A 89.583 96 9 1 2 96 410899514 410899609 3.400000e-23 121
65 TraesCS3B01G197600 chr3A 91.111 90 7 1 2 90 282047718 282047629 3.400000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G197600 chr3B 224955096 224962037 6941 True 12820.000000 12820 100.000000 1 6942 1 chr3B.!!$R2 6941
1 TraesCS3B01G197600 chr3B 695915022 695918362 3340 True 5912.000000 5912 98.624000 1629 4965 1 chr3B.!!$R3 3336
2 TraesCS3B01G197600 chr3B 25290539 25293854 3315 True 5890.000000 5890 98.734000 1639 4952 1 chr3B.!!$R1 3313
3 TraesCS3B01G197600 chr1A 517045161 517048470 3309 True 5912.000000 5912 98.912000 1639 4946 1 chr1A.!!$R1 3307
4 TraesCS3B01G197600 chr2A 676076328 676079647 3319 False 5906.000000 5906 98.795000 1640 4955 1 chr2A.!!$F4 3315
5 TraesCS3B01G197600 chr2A 216529698 216533011 3313 False 5895.000000 5895 98.793000 1640 4949 1 chr2A.!!$F1 3309
6 TraesCS3B01G197600 chr2A 448293158 448295743 2585 True 876.750000 1768 94.860750 93 6109 4 chr2A.!!$R1 6016
7 TraesCS3B01G197600 chr5B 306399042 306402358 3316 False 5901.000000 5901 98.794000 1641 4954 1 chr5B.!!$F1 3313
8 TraesCS3B01G197600 chr5B 503116128 503116629 501 True 241.000000 241 76.000000 1013 1527 1 chr5B.!!$R1 514
9 TraesCS3B01G197600 chr5A 259066407 259069733 3326 False 5901.000000 5901 98.708000 1639 4960 1 chr5A.!!$F2 3321
10 TraesCS3B01G197600 chr5A 174598282 174601595 3313 False 5893.000000 5893 98.764000 1640 4954 1 chr5A.!!$F1 3314
11 TraesCS3B01G197600 chr7A 477225701 477229021 3320 False 5891.000000 5891 98.705000 1640 4957 1 chr7A.!!$F3 3317
12 TraesCS3B01G197600 chr7A 26976674 26977634 960 True 1157.000000 1157 88.450000 4992 5949 1 chr7A.!!$R1 957
13 TraesCS3B01G197600 chr7A 27031298 27032938 1640 True 926.000000 1157 89.609500 1016 5949 2 chr7A.!!$R3 4933
14 TraesCS3B01G197600 chr7A 26822264 26823943 1679 True 912.500000 1149 89.066000 1017 5948 2 chr7A.!!$R2 4931
15 TraesCS3B01G197600 chr7A 27604636 27605165 529 False 647.000000 647 88.679000 1001 1530 1 chr7A.!!$F1 529
16 TraesCS3B01G197600 chr2D 338330090 338332349 2259 True 1184.333333 1733 94.539333 93 6078 3 chr2D.!!$R2 5985
17 TraesCS3B01G197600 chr2D 66157817 66158629 812 True 1144.000000 1144 92.054000 6128 6942 1 chr2D.!!$R1 814
18 TraesCS3B01G197600 chr7D 465909200 465910006 806 True 1118.000000 1118 91.728000 6135 6940 1 chr7D.!!$R2 805
19 TraesCS3B01G197600 chr7D 25897054 25898730 1676 True 931.000000 1182 88.087000 948 5948 2 chr7D.!!$R3 5000
20 TraesCS3B01G197600 chr7D 26564861 26566509 1648 True 899.000000 1114 88.464000 1001 5949 2 chr7D.!!$R5 4948
21 TraesCS3B01G197600 chr7D 26558505 26560231 1726 True 864.000000 1186 86.640000 989 5949 2 chr7D.!!$R4 4960
22 TraesCS3B01G197600 chr7D 27243394 27243923 529 False 630.000000 630 88.113000 1001 1530 1 chr7D.!!$F1 529
23 TraesCS3B01G197600 chr6D 62137018 62137830 812 True 1170.000000 1170 92.647000 6130 6942 1 chr6D.!!$R1 812
24 TraesCS3B01G197600 chr6D 387995331 387996135 804 True 1136.000000 1136 92.099000 6134 6942 1 chr6D.!!$R2 808
25 TraesCS3B01G197600 chr4A 710675730 710676695 965 True 1160.000000 1160 88.363000 4982 5949 1 chr4A.!!$R6 967
26 TraesCS3B01G197600 chr4A 695549387 695550195 808 True 1136.000000 1136 91.995000 6132 6942 1 chr4A.!!$R3 810
27 TraesCS3B01G197600 chr4A 710695003 710695531 528 True 673.000000 673 89.623000 1004 1532 1 chr4A.!!$R7 528
28 TraesCS3B01G197600 chr4A 710284301 710284829 528 True 662.000000 662 89.225000 1004 1532 1 chr4A.!!$R5 528
29 TraesCS3B01G197600 chr4A 703651684 703652222 538 False 588.000000 588 86.642000 1001 1530 1 chr4A.!!$F2 529
30 TraesCS3B01G197600 chr1D 430107215 430108026 811 True 1153.000000 1153 92.289000 6128 6942 1 chr1D.!!$R1 814
31 TraesCS3B01G197600 chr3D 553427306 553428109 803 False 1131.000000 1131 91.995000 6132 6942 1 chr3D.!!$F1 810
32 TraesCS3B01G197600 chr2B 46324179 46324979 800 False 1118.000000 1118 91.801000 6138 6942 1 chr2B.!!$F1 804
33 TraesCS3B01G197600 chr2B 800171968 800172551 583 True 579.000000 579 84.694000 948 1530 1 chr2B.!!$R1 582
34 TraesCS3B01G197600 chrUn 338079447 338080259 812 False 1109.000000 1109 91.331000 6129 6942 1 chrUn.!!$F3 813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 842 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.0 0.00 0.0 0.00 3.51 F
538 844 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.0 0.00 0.0 0.00 2.59 F
666 972 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.0 0.00 0.0 0.00 4.30 F
667 973 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.0 0.00 0.0 0.00 3.71 F
2717 3070 1.061546 GGGAGAGTGTTGTACCCCAA 58.938 55.0 0.00 0.0 35.00 4.12 F
3874 4228 0.035534 CGGAATGTCATGTGGTGGGA 60.036 55.0 0.00 0.0 0.00 4.37 F
4575 4936 0.530744 CCACACGAGGAAGGATCGAA 59.469 55.0 1.94 0.0 42.76 3.71 F
4670 5031 1.102978 GGTTTGGGCATATTCAGCGT 58.897 50.0 0.00 0.0 0.00 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1581 1932 1.522668 TCCAAGCACACACACATAGC 58.477 50.000 0.00 0.00 0.00 2.97 R
2143 2496 1.688311 CGGTATCCTCCACCTCCTTCA 60.688 57.143 0.00 0.00 33.62 3.02 R
2717 3070 1.073763 TCAGCAACCACCAGCTTATGT 59.926 47.619 0.00 0.00 39.50 2.29 R
2748 3101 2.264480 CCGCTGGACACGAATCCA 59.736 61.111 11.15 11.15 46.92 3.41 R
4670 5031 0.689080 CTGGAGCTTCTGGAGGCCTA 60.689 60.000 4.42 0.00 33.44 3.93 R
5718 6183 0.108804 CTCCGTGCACTTGTACCGAT 60.109 55.000 16.19 0.00 0.00 4.18 R
5785 6250 1.179174 TCTCCCGTATCATGGCCTCG 61.179 60.000 3.32 0.00 0.00 4.63 R
6343 6810 1.227556 GAGCGTGCGGGACCATAAT 60.228 57.895 0.00 0.00 0.00 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.836268 TTCTCTTTAATAGTAAGCGAAACCAA 57.164 30.769 0.00 0.00 0.00 3.67
44 45 8.836268 TCTCTTTAATAGTAAGCGAAACCAAA 57.164 30.769 0.00 0.00 0.00 3.28
45 46 8.715088 TCTCTTTAATAGTAAGCGAAACCAAAC 58.285 33.333 0.00 0.00 0.00 2.93
46 47 7.809665 TCTTTAATAGTAAGCGAAACCAAACC 58.190 34.615 0.00 0.00 0.00 3.27
47 48 7.444792 TCTTTAATAGTAAGCGAAACCAAACCA 59.555 33.333 0.00 0.00 0.00 3.67
48 49 7.507733 TTAATAGTAAGCGAAACCAAACCAA 57.492 32.000 0.00 0.00 0.00 3.67
49 50 3.982576 AGTAAGCGAAACCAAACCAAG 57.017 42.857 0.00 0.00 0.00 3.61
50 51 3.547746 AGTAAGCGAAACCAAACCAAGA 58.452 40.909 0.00 0.00 0.00 3.02
51 52 3.949113 AGTAAGCGAAACCAAACCAAGAA 59.051 39.130 0.00 0.00 0.00 2.52
52 53 4.583073 AGTAAGCGAAACCAAACCAAGAAT 59.417 37.500 0.00 0.00 0.00 2.40
53 54 5.766174 AGTAAGCGAAACCAAACCAAGAATA 59.234 36.000 0.00 0.00 0.00 1.75
54 55 4.499037 AGCGAAACCAAACCAAGAATAC 57.501 40.909 0.00 0.00 0.00 1.89
55 56 3.254903 AGCGAAACCAAACCAAGAATACC 59.745 43.478 0.00 0.00 0.00 2.73
56 57 3.254903 GCGAAACCAAACCAAGAATACCT 59.745 43.478 0.00 0.00 0.00 3.08
57 58 4.456566 GCGAAACCAAACCAAGAATACCTA 59.543 41.667 0.00 0.00 0.00 3.08
58 59 5.124936 GCGAAACCAAACCAAGAATACCTAT 59.875 40.000 0.00 0.00 0.00 2.57
59 60 6.349860 GCGAAACCAAACCAAGAATACCTATT 60.350 38.462 0.00 0.00 0.00 1.73
60 61 7.248437 CGAAACCAAACCAAGAATACCTATTC 58.752 38.462 0.00 0.00 41.78 1.75
61 62 7.476540 AAACCAAACCAAGAATACCTATTCC 57.523 36.000 2.04 0.00 42.29 3.01
62 63 5.516044 ACCAAACCAAGAATACCTATTCCC 58.484 41.667 2.04 0.00 42.29 3.97
63 64 5.255443 ACCAAACCAAGAATACCTATTCCCT 59.745 40.000 2.04 0.00 42.29 4.20
64 65 6.194967 CCAAACCAAGAATACCTATTCCCTT 58.805 40.000 2.04 0.00 42.29 3.95
65 66 6.667848 CCAAACCAAGAATACCTATTCCCTTT 59.332 38.462 2.04 0.00 42.29 3.11
66 67 7.837187 CCAAACCAAGAATACCTATTCCCTTTA 59.163 37.037 2.04 0.00 42.29 1.85
67 68 9.250246 CAAACCAAGAATACCTATTCCCTTTAA 57.750 33.333 2.04 0.00 42.29 1.52
195 196 9.055248 GTTTGAATCTGATGCATATTTATACGC 57.945 33.333 0.00 0.00 0.00 4.42
211 212 2.580276 GCACGGACGGGGTTATCA 59.420 61.111 0.00 0.00 0.00 2.15
248 249 1.068333 CCGCCCTGATTTTTGTCAGTG 60.068 52.381 3.54 0.00 43.22 3.66
285 591 1.228245 AGCAACAACCCTCGTGCAT 60.228 52.632 0.00 0.00 0.00 3.96
313 619 2.284190 GCTCATCTTCTTGGTACCAGC 58.716 52.381 15.65 7.96 0.00 4.85
353 659 4.697756 CCCCGAGAAACTGCGCCA 62.698 66.667 4.18 0.00 0.00 5.69
368 674 1.003223 GCGCCAGACGTAAACAAAAGT 60.003 47.619 0.00 0.00 46.11 2.66
416 722 6.441274 GGCAACAATAATTCATCGACATGAT 58.559 36.000 0.00 0.00 38.89 2.45
460 766 4.394712 GGGGCGTGTCAGAGGGTG 62.395 72.222 0.00 0.00 0.00 4.61
462 768 4.008933 GGCGTGTCAGAGGGTGCT 62.009 66.667 0.00 0.00 0.00 4.40
463 769 2.031163 GCGTGTCAGAGGGTGCTT 59.969 61.111 0.00 0.00 0.00 3.91
464 770 2.320587 GCGTGTCAGAGGGTGCTTG 61.321 63.158 0.00 0.00 0.00 4.01
465 771 1.669115 CGTGTCAGAGGGTGCTTGG 60.669 63.158 0.00 0.00 0.00 3.61
466 772 1.754745 GTGTCAGAGGGTGCTTGGA 59.245 57.895 0.00 0.00 0.00 3.53
467 773 0.326264 GTGTCAGAGGGTGCTTGGAT 59.674 55.000 0.00 0.00 0.00 3.41
468 774 1.555075 GTGTCAGAGGGTGCTTGGATA 59.445 52.381 0.00 0.00 0.00 2.59
469 775 1.555075 TGTCAGAGGGTGCTTGGATAC 59.445 52.381 0.00 0.00 0.00 2.24
489 795 8.664211 GGATACAAGGGACTATTTTTAGTCTG 57.336 38.462 11.69 6.32 44.35 3.51
490 796 8.483758 GGATACAAGGGACTATTTTTAGTCTGA 58.516 37.037 11.69 0.00 44.35 3.27
491 797 9.315525 GATACAAGGGACTATTTTTAGTCTGAC 57.684 37.037 11.69 0.00 44.35 3.51
492 798 7.317722 ACAAGGGACTATTTTTAGTCTGACT 57.682 36.000 15.57 15.57 44.35 3.41
493 799 8.431910 ACAAGGGACTATTTTTAGTCTGACTA 57.568 34.615 13.34 13.34 44.35 2.59
494 800 8.877195 ACAAGGGACTATTTTTAGTCTGACTAA 58.123 33.333 22.80 22.80 44.35 2.24
495 801 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
514 820 9.654663 TGACTAAAAATAGTCTCTTTTAGAGGC 57.345 33.333 22.30 14.20 46.94 4.70
523 829 6.971527 GTCTCTTTTAGAGGCTAAAGTTCC 57.028 41.667 7.84 0.00 43.38 3.62
524 830 6.465084 GTCTCTTTTAGAGGCTAAAGTTCCA 58.535 40.000 7.84 0.00 43.38 3.53
525 831 6.935208 GTCTCTTTTAGAGGCTAAAGTTCCAA 59.065 38.462 7.84 0.00 43.38 3.53
526 832 7.118535 GTCTCTTTTAGAGGCTAAAGTTCCAAG 59.881 40.741 7.84 0.00 43.38 3.61
527 833 5.705905 TCTTTTAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 33.97 4.01
528 834 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
529 835 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
530 836 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
531 837 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
532 838 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
533 839 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
534 840 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
535 841 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
536 842 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
537 843 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
538 844 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
539 845 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
540 846 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
541 847 1.777878 TCCAAGCACCCCTGACTAAAA 59.222 47.619 0.00 0.00 0.00 1.52
542 848 2.175931 TCCAAGCACCCCTGACTAAAAA 59.824 45.455 0.00 0.00 0.00 1.94
543 849 2.558359 CCAAGCACCCCTGACTAAAAAG 59.442 50.000 0.00 0.00 0.00 2.27
544 850 3.486383 CAAGCACCCCTGACTAAAAAGA 58.514 45.455 0.00 0.00 0.00 2.52
545 851 3.425162 AGCACCCCTGACTAAAAAGAG 57.575 47.619 0.00 0.00 0.00 2.85
546 852 2.040412 AGCACCCCTGACTAAAAAGAGG 59.960 50.000 0.00 0.00 0.00 3.69
547 853 2.437413 CACCCCTGACTAAAAAGAGGC 58.563 52.381 0.00 0.00 0.00 4.70
548 854 2.040412 CACCCCTGACTAAAAAGAGGCT 59.960 50.000 0.00 0.00 0.00 4.58
549 855 3.263425 CACCCCTGACTAAAAAGAGGCTA 59.737 47.826 0.00 0.00 0.00 3.93
550 856 3.519913 ACCCCTGACTAAAAAGAGGCTAG 59.480 47.826 0.00 0.00 0.00 3.42
551 857 3.118223 CCCCTGACTAAAAAGAGGCTAGG 60.118 52.174 0.00 0.00 0.00 3.02
552 858 3.775316 CCCTGACTAAAAAGAGGCTAGGA 59.225 47.826 0.00 0.00 29.08 2.94
553 859 4.383226 CCCTGACTAAAAAGAGGCTAGGAC 60.383 50.000 0.00 0.00 29.08 3.85
554 860 4.468153 CCTGACTAAAAAGAGGCTAGGACT 59.532 45.833 0.00 0.00 29.08 3.85
555 861 5.657302 CCTGACTAAAAAGAGGCTAGGACTA 59.343 44.000 0.00 0.00 29.08 2.59
556 862 6.183360 CCTGACTAAAAAGAGGCTAGGACTAG 60.183 46.154 1.98 1.98 36.29 2.57
557 863 6.254522 TGACTAAAAAGAGGCTAGGACTAGT 58.745 40.000 0.00 0.00 35.65 2.57
558 864 6.377712 TGACTAAAAAGAGGCTAGGACTAGTC 59.622 42.308 14.87 14.87 38.03 2.59
564 870 3.306472 AGGCTAGGACTAGTCTTGAGG 57.694 52.381 21.88 10.56 45.03 3.86
565 871 1.684450 GGCTAGGACTAGTCTTGAGGC 59.316 57.143 21.88 21.38 35.06 4.70
566 872 2.661718 GCTAGGACTAGTCTTGAGGCT 58.338 52.381 21.88 11.79 35.65 4.58
567 873 3.435313 GGCTAGGACTAGTCTTGAGGCTA 60.435 52.174 24.87 16.06 35.06 3.93
568 874 4.208746 GCTAGGACTAGTCTTGAGGCTAA 58.791 47.826 21.88 0.00 35.65 3.09
569 875 4.645588 GCTAGGACTAGTCTTGAGGCTAAA 59.354 45.833 21.88 0.00 35.65 1.85
570 876 5.127356 GCTAGGACTAGTCTTGAGGCTAAAA 59.873 44.000 21.88 0.00 35.65 1.52
571 877 6.183360 GCTAGGACTAGTCTTGAGGCTAAAAT 60.183 42.308 21.88 0.00 35.65 1.82
572 878 6.228616 AGGACTAGTCTTGAGGCTAAAATC 57.771 41.667 21.88 0.73 0.00 2.17
573 879 5.961421 AGGACTAGTCTTGAGGCTAAAATCT 59.039 40.000 21.88 3.06 0.00 2.40
574 880 6.442244 AGGACTAGTCTTGAGGCTAAAATCTT 59.558 38.462 21.88 0.00 0.00 2.40
575 881 7.037945 AGGACTAGTCTTGAGGCTAAAATCTTT 60.038 37.037 21.88 0.00 0.00 2.52
576 882 7.608376 GGACTAGTCTTGAGGCTAAAATCTTTT 59.392 37.037 21.88 0.00 0.00 2.27
577 883 9.654663 GACTAGTCTTGAGGCTAAAATCTTTTA 57.345 33.333 15.91 0.00 0.00 1.52
591 897 9.025041 CTAAAATCTTTTAGTCATGGGAAACCT 57.975 33.333 12.31 0.00 45.91 3.50
622 928 8.807948 AATATGTATTAGCTCTCTCTCTCTCC 57.192 38.462 0.00 0.00 0.00 3.71
623 929 5.904984 TGTATTAGCTCTCTCTCTCTCCT 57.095 43.478 0.00 0.00 0.00 3.69
624 930 5.865085 TGTATTAGCTCTCTCTCTCTCCTC 58.135 45.833 0.00 0.00 0.00 3.71
625 931 5.368230 TGTATTAGCTCTCTCTCTCTCCTCA 59.632 44.000 0.00 0.00 0.00 3.86
626 932 5.589367 ATTAGCTCTCTCTCTCTCCTCAT 57.411 43.478 0.00 0.00 0.00 2.90
627 933 3.959495 AGCTCTCTCTCTCTCCTCATT 57.041 47.619 0.00 0.00 0.00 2.57
628 934 4.255510 AGCTCTCTCTCTCTCCTCATTT 57.744 45.455 0.00 0.00 0.00 2.32
629 935 5.387113 AGCTCTCTCTCTCTCCTCATTTA 57.613 43.478 0.00 0.00 0.00 1.40
630 936 5.765510 AGCTCTCTCTCTCTCCTCATTTAA 58.234 41.667 0.00 0.00 0.00 1.52
631 937 6.376248 AGCTCTCTCTCTCTCCTCATTTAAT 58.624 40.000 0.00 0.00 0.00 1.40
632 938 6.840705 AGCTCTCTCTCTCTCCTCATTTAATT 59.159 38.462 0.00 0.00 0.00 1.40
633 939 7.014615 AGCTCTCTCTCTCTCCTCATTTAATTC 59.985 40.741 0.00 0.00 0.00 2.17
634 940 7.595819 TCTCTCTCTCTCCTCATTTAATTCC 57.404 40.000 0.00 0.00 0.00 3.01
635 941 7.361438 TCTCTCTCTCTCCTCATTTAATTCCT 58.639 38.462 0.00 0.00 0.00 3.36
636 942 7.505585 TCTCTCTCTCTCCTCATTTAATTCCTC 59.494 40.741 0.00 0.00 0.00 3.71
637 943 7.361438 TCTCTCTCTCCTCATTTAATTCCTCT 58.639 38.462 0.00 0.00 0.00 3.69
638 944 7.505585 TCTCTCTCTCCTCATTTAATTCCTCTC 59.494 40.741 0.00 0.00 0.00 3.20
639 945 6.553100 TCTCTCTCCTCATTTAATTCCTCTCC 59.447 42.308 0.00 0.00 0.00 3.71
640 946 6.448202 TCTCTCCTCATTTAATTCCTCTCCT 58.552 40.000 0.00 0.00 0.00 3.69
641 947 6.905776 TCTCTCCTCATTTAATTCCTCTCCTT 59.094 38.462 0.00 0.00 0.00 3.36
642 948 8.068110 TCTCTCCTCATTTAATTCCTCTCCTTA 58.932 37.037 0.00 0.00 0.00 2.69
643 949 8.256356 TCTCCTCATTTAATTCCTCTCCTTAG 57.744 38.462 0.00 0.00 0.00 2.18
644 950 7.846823 TCTCCTCATTTAATTCCTCTCCTTAGT 59.153 37.037 0.00 0.00 0.00 2.24
645 951 8.393959 TCCTCATTTAATTCCTCTCCTTAGTT 57.606 34.615 0.00 0.00 0.00 2.24
646 952 8.487028 TCCTCATTTAATTCCTCTCCTTAGTTC 58.513 37.037 0.00 0.00 0.00 3.01
647 953 8.490311 CCTCATTTAATTCCTCTCCTTAGTTCT 58.510 37.037 0.00 0.00 0.00 3.01
648 954 9.323985 CTCATTTAATTCCTCTCCTTAGTTCTG 57.676 37.037 0.00 0.00 0.00 3.02
649 955 8.267894 TCATTTAATTCCTCTCCTTAGTTCTGG 58.732 37.037 0.00 0.00 0.00 3.86
650 956 7.808279 TTTAATTCCTCTCCTTAGTTCTGGA 57.192 36.000 0.00 0.00 0.00 3.86
651 957 7.996758 TTAATTCCTCTCCTTAGTTCTGGAT 57.003 36.000 0.00 0.00 0.00 3.41
652 958 6.899892 AATTCCTCTCCTTAGTTCTGGATT 57.100 37.500 0.00 0.00 0.00 3.01
653 959 5.683876 TTCCTCTCCTTAGTTCTGGATTG 57.316 43.478 0.00 0.00 0.00 2.67
654 960 4.033709 TCCTCTCCTTAGTTCTGGATTGG 58.966 47.826 0.00 0.00 0.00 3.16
655 961 4.033709 CCTCTCCTTAGTTCTGGATTGGA 58.966 47.826 0.00 0.00 31.05 3.53
656 962 4.100808 CCTCTCCTTAGTTCTGGATTGGAG 59.899 50.000 0.00 0.00 40.47 3.86
657 963 4.033709 TCTCCTTAGTTCTGGATTGGAGG 58.966 47.826 0.00 0.00 39.80 4.30
658 964 3.115390 TCCTTAGTTCTGGATTGGAGGG 58.885 50.000 0.00 0.00 0.00 4.30
659 965 2.846827 CCTTAGTTCTGGATTGGAGGGT 59.153 50.000 0.00 0.00 0.00 4.34
660 966 3.267031 CCTTAGTTCTGGATTGGAGGGTT 59.733 47.826 0.00 0.00 0.00 4.11
661 967 4.263949 CCTTAGTTCTGGATTGGAGGGTTT 60.264 45.833 0.00 0.00 0.00 3.27
662 968 3.160679 AGTTCTGGATTGGAGGGTTTG 57.839 47.619 0.00 0.00 0.00 2.93
663 969 2.171003 GTTCTGGATTGGAGGGTTTGG 58.829 52.381 0.00 0.00 0.00 3.28
664 970 1.753903 TCTGGATTGGAGGGTTTGGA 58.246 50.000 0.00 0.00 0.00 3.53
665 971 1.635487 TCTGGATTGGAGGGTTTGGAG 59.365 52.381 0.00 0.00 0.00 3.86
666 972 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
667 973 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
668 974 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
669 975 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
670 976 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
671 977 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
672 978 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
673 979 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
674 980 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
675 981 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
676 982 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
677 983 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
678 984 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
679 985 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
680 986 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
681 987 6.323739 GGGTTTGGAGGATAATAAATGCTCAA 59.676 38.462 8.48 0.00 38.10 3.02
682 988 7.015584 GGGTTTGGAGGATAATAAATGCTCAAT 59.984 37.037 8.48 0.00 38.10 2.57
683 989 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
686 992 9.866655 TTGGAGGATAATAAATGCTCAATAACT 57.133 29.630 8.48 0.00 38.10 2.24
719 1025 7.051000 AGTCTCTTTAGTATTTGGATCCAAGC 58.949 38.462 25.69 19.18 37.24 4.01
720 1026 6.823689 GTCTCTTTAGTATTTGGATCCAAGCA 59.176 38.462 25.69 14.00 37.24 3.91
721 1027 7.500559 GTCTCTTTAGTATTTGGATCCAAGCAT 59.499 37.037 25.69 19.69 37.24 3.79
722 1028 7.500227 TCTCTTTAGTATTTGGATCCAAGCATG 59.500 37.037 25.69 12.43 37.24 4.06
733 1039 2.322355 CCAAGCATGGGTGAGACTAG 57.678 55.000 0.00 0.00 43.51 2.57
734 1040 1.661341 CAAGCATGGGTGAGACTAGC 58.339 55.000 0.00 0.00 0.00 3.42
735 1041 1.065926 CAAGCATGGGTGAGACTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
736 1042 1.279496 AGCATGGGTGAGACTAGCAA 58.721 50.000 0.00 0.00 0.00 3.91
737 1043 1.209019 AGCATGGGTGAGACTAGCAAG 59.791 52.381 0.00 0.00 0.00 4.01
738 1044 1.065854 GCATGGGTGAGACTAGCAAGT 60.066 52.381 0.00 0.00 39.21 3.16
739 1045 2.616510 GCATGGGTGAGACTAGCAAGTT 60.617 50.000 0.00 0.00 35.56 2.66
740 1046 3.679389 CATGGGTGAGACTAGCAAGTTT 58.321 45.455 0.00 0.00 35.56 2.66
741 1047 3.857157 TGGGTGAGACTAGCAAGTTTT 57.143 42.857 0.00 0.00 35.56 2.43
742 1048 4.967084 TGGGTGAGACTAGCAAGTTTTA 57.033 40.909 0.00 0.00 35.56 1.52
743 1049 4.894784 TGGGTGAGACTAGCAAGTTTTAG 58.105 43.478 0.00 0.00 35.56 1.85
744 1050 4.347000 TGGGTGAGACTAGCAAGTTTTAGT 59.653 41.667 0.00 0.00 35.56 2.24
745 1051 4.930405 GGGTGAGACTAGCAAGTTTTAGTC 59.070 45.833 13.08 13.08 43.83 2.59
746 1052 4.930405 GGTGAGACTAGCAAGTTTTAGTCC 59.070 45.833 15.72 10.59 44.32 3.85
747 1053 4.930405 GTGAGACTAGCAAGTTTTAGTCCC 59.070 45.833 15.72 8.76 44.32 4.46
748 1054 4.591498 TGAGACTAGCAAGTTTTAGTCCCA 59.409 41.667 15.72 10.61 44.32 4.37
749 1055 4.895961 AGACTAGCAAGTTTTAGTCCCAC 58.104 43.478 15.72 0.00 44.32 4.61
750 1056 4.593634 AGACTAGCAAGTTTTAGTCCCACT 59.406 41.667 15.72 1.62 44.32 4.00
751 1057 5.778750 AGACTAGCAAGTTTTAGTCCCACTA 59.221 40.000 15.72 0.00 44.32 2.74
752 1058 5.791666 ACTAGCAAGTTTTAGTCCCACTAC 58.208 41.667 0.00 0.00 27.15 2.73
753 1059 4.976540 AGCAAGTTTTAGTCCCACTACT 57.023 40.909 0.00 0.00 28.93 2.57
754 1060 5.306114 AGCAAGTTTTAGTCCCACTACTT 57.694 39.130 0.00 0.00 28.93 2.24
755 1061 5.691896 AGCAAGTTTTAGTCCCACTACTTT 58.308 37.500 0.00 0.00 28.93 2.66
756 1062 6.127101 AGCAAGTTTTAGTCCCACTACTTTT 58.873 36.000 0.00 0.00 28.93 2.27
757 1063 7.284820 AGCAAGTTTTAGTCCCACTACTTTTA 58.715 34.615 0.00 0.00 28.93 1.52
758 1064 7.444487 AGCAAGTTTTAGTCCCACTACTTTTAG 59.556 37.037 0.00 0.00 28.93 1.85
759 1065 7.228108 GCAAGTTTTAGTCCCACTACTTTTAGT 59.772 37.037 0.00 0.00 39.30 2.24
760 1066 8.771766 CAAGTTTTAGTCCCACTACTTTTAGTC 58.228 37.037 0.00 0.00 36.31 2.59
761 1067 8.026396 AGTTTTAGTCCCACTACTTTTAGTCA 57.974 34.615 0.00 0.00 36.31 3.41
762 1068 8.657712 AGTTTTAGTCCCACTACTTTTAGTCAT 58.342 33.333 0.00 0.00 36.31 3.06
763 1069 8.718734 GTTTTAGTCCCACTACTTTTAGTCATG 58.281 37.037 0.00 0.00 36.31 3.07
764 1070 5.422214 AGTCCCACTACTTTTAGTCATGG 57.578 43.478 0.00 0.00 36.31 3.66
765 1071 4.225267 AGTCCCACTACTTTTAGTCATGGG 59.775 45.833 16.70 16.70 46.94 4.00
780 1086 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
781 1087 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
782 1088 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
783 1089 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
784 1090 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
785 1091 4.196971 GGGACTAAAACGTATCCAAGCAT 58.803 43.478 0.00 0.00 32.45 3.79
786 1092 4.035208 GGGACTAAAACGTATCCAAGCATG 59.965 45.833 0.00 0.00 32.45 4.06
787 1093 4.495844 GGACTAAAACGTATCCAAGCATGC 60.496 45.833 10.51 10.51 0.00 4.06
788 1094 4.261801 ACTAAAACGTATCCAAGCATGCT 58.738 39.130 16.30 16.30 0.00 3.79
789 1095 3.764885 AAAACGTATCCAAGCATGCTC 57.235 42.857 22.93 6.18 0.00 4.26
804 1110 3.181477 GCATGCTCTCAGTGACTACTCAT 60.181 47.826 11.37 0.00 34.07 2.90
805 1111 4.609947 CATGCTCTCAGTGACTACTCATC 58.390 47.826 0.00 0.00 34.07 2.92
854 1161 4.222105 GGAGACGTCTACGCCTCT 57.778 61.111 20.09 7.01 45.95 3.69
879 1186 2.857592 CGCCCGCCGTATTATATACT 57.142 50.000 0.00 0.00 0.00 2.12
880 1187 2.456989 CGCCCGCCGTATTATATACTG 58.543 52.381 0.00 0.00 0.00 2.74
904 1211 1.880340 CCGCGTCAGGAGCTCATTC 60.880 63.158 17.19 3.14 0.00 2.67
1346 1678 2.756283 CGAGGAGGCCGAGACCTT 60.756 66.667 13.27 0.95 41.32 3.50
1581 1932 9.581099 GTTGGATTTTTATTTGGTACTATGTGG 57.419 33.333 0.00 0.00 0.00 4.17
1605 1956 3.483808 TGTGTGTGTGCTTGGATAGAA 57.516 42.857 0.00 0.00 0.00 2.10
1606 1957 3.814625 TGTGTGTGTGCTTGGATAGAAA 58.185 40.909 0.00 0.00 0.00 2.52
1607 1958 4.397420 TGTGTGTGTGCTTGGATAGAAAT 58.603 39.130 0.00 0.00 0.00 2.17
1608 1959 4.826733 TGTGTGTGTGCTTGGATAGAAATT 59.173 37.500 0.00 0.00 0.00 1.82
1631 1982 8.823220 ATTAATTAAACTGGAGGCAACATAGT 57.177 30.769 1.21 0.00 41.41 2.12
1632 1983 9.914834 ATTAATTAAACTGGAGGCAACATAGTA 57.085 29.630 1.21 0.00 41.41 1.82
1633 1984 9.742144 TTAATTAAACTGGAGGCAACATAGTAA 57.258 29.630 0.00 0.00 41.41 2.24
1634 1985 8.823220 AATTAAACTGGAGGCAACATAGTAAT 57.177 30.769 0.00 0.00 41.41 1.89
1635 1986 8.823220 ATTAAACTGGAGGCAACATAGTAATT 57.177 30.769 0.00 0.00 41.41 1.40
1636 1987 9.914834 ATTAAACTGGAGGCAACATAGTAATTA 57.085 29.630 0.00 0.00 41.41 1.40
1637 1988 7.625828 AAACTGGAGGCAACATAGTAATTAC 57.374 36.000 7.57 7.57 41.41 1.89
1638 1989 6.561519 ACTGGAGGCAACATAGTAATTACT 57.438 37.500 21.35 21.35 38.78 2.24
1639 1990 7.670605 ACTGGAGGCAACATAGTAATTACTA 57.329 36.000 24.01 24.01 42.43 1.82
1640 1991 8.086143 ACTGGAGGCAACATAGTAATTACTAA 57.914 34.615 25.21 11.88 41.64 2.24
1641 1992 7.985752 ACTGGAGGCAACATAGTAATTACTAAC 59.014 37.037 25.21 13.94 41.64 2.34
1642 1993 8.086143 TGGAGGCAACATAGTAATTACTAACT 57.914 34.615 25.21 16.65 41.64 2.24
1643 1994 8.202137 TGGAGGCAACATAGTAATTACTAACTC 58.798 37.037 25.21 21.56 41.64 3.01
1644 1995 7.656542 GGAGGCAACATAGTAATTACTAACTCC 59.343 40.741 25.21 24.75 41.64 3.85
1645 1996 7.208080 AGGCAACATAGTAATTACTAACTCCG 58.792 38.462 25.21 15.22 41.64 4.63
1734 2085 2.604614 GCCAACGTAAAAACTCAGCCAG 60.605 50.000 0.00 0.00 0.00 4.85
2143 2496 2.307098 CCAAATGGAGAGGACAGAAGGT 59.693 50.000 0.00 0.00 37.39 3.50
2478 2831 6.263617 GGGTACATCTAACACAGGTTTTGAAA 59.736 38.462 0.00 0.00 38.45 2.69
2717 3070 1.061546 GGGAGAGTGTTGTACCCCAA 58.938 55.000 0.00 0.00 35.00 4.12
2748 3101 0.668535 GGTTGCTGACTTCCGCTTTT 59.331 50.000 0.00 0.00 0.00 2.27
2944 3297 1.344763 CTCGGAGGAGTTTGGAGTGTT 59.655 52.381 0.00 0.00 35.48 3.32
2961 3314 0.693049 GTTCAGGGGAAGGAGAAGCA 59.307 55.000 0.00 0.00 32.62 3.91
3147 3500 3.584848 GGCATATGAGGACCTCTACCAAT 59.415 47.826 22.14 9.49 0.00 3.16
3273 3626 2.638480 CCAACTCTTGGTGAAGGACA 57.362 50.000 0.00 0.00 45.93 4.02
3306 3659 2.447408 TAGATGGCGGGAGTACTTCA 57.553 50.000 2.92 0.00 0.00 3.02
3348 3701 7.106239 GGAGAATGAGAGTTCTACCATTGAAA 58.894 38.462 0.00 0.00 38.51 2.69
3450 3803 0.678048 GAAAGGAGGCAAGGCGATGT 60.678 55.000 0.00 0.00 0.00 3.06
3492 3845 1.477685 GGTGTGGAAAGGTCTCGGGA 61.478 60.000 0.00 0.00 0.00 5.14
3740 4094 0.776810 TTGGTTTCATGCCTGGGAGA 59.223 50.000 0.00 0.00 0.00 3.71
3874 4228 0.035534 CGGAATGTCATGTGGTGGGA 60.036 55.000 0.00 0.00 0.00 4.37
3952 4307 7.094508 ACAATAATGTTGTGACAAGTGTTCA 57.905 32.000 0.00 0.00 39.66 3.18
4094 4449 3.498774 ATCCCATGGTGTATGCTCTTC 57.501 47.619 11.73 0.00 35.37 2.87
4365 4726 2.487762 GTGAACCATCGAATCAAAGCCA 59.512 45.455 0.00 0.00 0.00 4.75
4575 4936 0.530744 CCACACGAGGAAGGATCGAA 59.469 55.000 1.94 0.00 42.76 3.71
4670 5031 1.102978 GGTTTGGGCATATTCAGCGT 58.897 50.000 0.00 0.00 0.00 5.07
4743 5104 3.680920 AAGAGAGGGCGGGGTCGAT 62.681 63.158 0.00 0.00 39.00 3.59
4782 5145 1.819903 AGTCCGTTAAGAGAGACCTGC 59.180 52.381 0.00 0.00 0.00 4.85
4959 5322 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4962 5325 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4965 5328 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4966 5329 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4967 5330 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4968 5331 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4969 5332 4.271049 TGTTGTTGTTGTTGTTGTTGTTGG 59.729 37.500 0.00 0.00 0.00 3.77
4984 5446 5.897377 GTTGTTGGAGGCAACATAGTAAT 57.103 39.130 0.00 0.00 43.54 1.89
4985 5447 6.267496 GTTGTTGGAGGCAACATAGTAATT 57.733 37.500 0.00 0.00 43.54 1.40
4986 5448 7.385778 GTTGTTGGAGGCAACATAGTAATTA 57.614 36.000 0.00 0.00 43.54 1.40
4987 5449 6.995511 TGTTGGAGGCAACATAGTAATTAC 57.004 37.500 7.57 7.57 39.80 1.89
5718 6183 1.591703 CGGAGCAGCAGACCAACTA 59.408 57.895 0.00 0.00 0.00 2.24
5785 6250 3.462678 GTGAGGAGGGCCGAGGTC 61.463 72.222 0.00 0.00 39.96 3.85
5961 6426 3.568007 TGACACAAGCTGGTAAATGGTTC 59.432 43.478 0.00 0.00 0.00 3.62
5963 6428 2.811431 CACAAGCTGGTAAATGGTTCGA 59.189 45.455 0.00 0.00 0.00 3.71
6004 6469 7.337436 ACAAAGGTAGTTTTGTTGCTTACTACA 59.663 33.333 11.86 0.00 46.18 2.74
6005 6470 6.856135 AGGTAGTTTTGTTGCTTACTACAC 57.144 37.500 11.86 3.74 42.87 2.90
6006 6471 6.350906 AGGTAGTTTTGTTGCTTACTACACA 58.649 36.000 11.86 0.00 42.87 3.72
6007 6472 6.996282 AGGTAGTTTTGTTGCTTACTACACAT 59.004 34.615 11.86 0.00 42.87 3.21
6008 6473 7.041372 AGGTAGTTTTGTTGCTTACTACACATG 60.041 37.037 11.86 0.00 42.87 3.21
6010 6475 5.825679 AGTTTTGTTGCTTACTACACATGGA 59.174 36.000 0.00 0.00 31.06 3.41
6011 6476 6.320164 AGTTTTGTTGCTTACTACACATGGAA 59.680 34.615 0.00 0.00 31.06 3.53
6021 6486 4.495422 ACTACACATGGAAGATCACGAAC 58.505 43.478 0.00 0.00 0.00 3.95
6035 6500 9.234384 GAAGATCACGAACGATTTATCTCTAAA 57.766 33.333 0.14 0.00 0.00 1.85
6036 6501 8.789881 AGATCACGAACGATTTATCTCTAAAG 57.210 34.615 0.14 0.00 30.61 1.85
6037 6502 8.622157 AGATCACGAACGATTTATCTCTAAAGA 58.378 33.333 0.14 0.00 35.54 2.52
6038 6503 7.966157 TCACGAACGATTTATCTCTAAAGAC 57.034 36.000 0.14 0.00 33.32 3.01
6080 6545 3.591196 TGGGCATTTGTAGCATTGTTC 57.409 42.857 0.00 0.00 0.00 3.18
6086 6551 4.263677 GCATTTGTAGCATTGTTCACATCG 59.736 41.667 0.00 0.00 0.00 3.84
6087 6552 5.630061 CATTTGTAGCATTGTTCACATCGA 58.370 37.500 0.00 0.00 0.00 3.59
6091 6556 1.736126 AGCATTGTTCACATCGAGCAG 59.264 47.619 0.00 0.00 36.10 4.24
6099 6564 3.044235 TCACATCGAGCAGAACATTGT 57.956 42.857 0.00 0.00 0.00 2.71
6105 6570 3.067106 TCGAGCAGAACATTGTTTCTCC 58.933 45.455 3.08 0.00 33.31 3.71
6109 6574 3.499918 AGCAGAACATTGTTTCTCCGAAG 59.500 43.478 3.08 0.00 33.31 3.79
6110 6575 3.251004 GCAGAACATTGTTTCTCCGAAGT 59.749 43.478 3.08 0.00 33.31 3.01
6111 6576 4.261197 GCAGAACATTGTTTCTCCGAAGTT 60.261 41.667 3.08 0.00 33.31 2.66
6112 6577 5.733373 GCAGAACATTGTTTCTCCGAAGTTT 60.733 40.000 3.08 0.00 33.31 2.66
6113 6578 6.265577 CAGAACATTGTTTCTCCGAAGTTTT 58.734 36.000 3.08 0.00 33.31 2.43
6114 6579 6.414987 CAGAACATTGTTTCTCCGAAGTTTTC 59.585 38.462 3.08 0.00 33.31 2.29
6115 6580 5.183014 ACATTGTTTCTCCGAAGTTTTCC 57.817 39.130 0.00 0.00 0.00 3.13
6116 6581 4.887655 ACATTGTTTCTCCGAAGTTTTCCT 59.112 37.500 0.00 0.00 0.00 3.36
6117 6582 5.008712 ACATTGTTTCTCCGAAGTTTTCCTC 59.991 40.000 0.00 0.00 0.00 3.71
6118 6583 4.145365 TGTTTCTCCGAAGTTTTCCTCA 57.855 40.909 0.00 0.00 0.00 3.86
6119 6584 4.714632 TGTTTCTCCGAAGTTTTCCTCAT 58.285 39.130 0.00 0.00 0.00 2.90
6120 6585 4.515191 TGTTTCTCCGAAGTTTTCCTCATG 59.485 41.667 0.00 0.00 0.00 3.07
6121 6586 2.699954 TCTCCGAAGTTTTCCTCATGC 58.300 47.619 0.00 0.00 0.00 4.06
6122 6587 2.038426 TCTCCGAAGTTTTCCTCATGCA 59.962 45.455 0.00 0.00 0.00 3.96
6123 6588 3.012518 CTCCGAAGTTTTCCTCATGCAT 58.987 45.455 0.00 0.00 0.00 3.96
6124 6589 3.420893 TCCGAAGTTTTCCTCATGCATT 58.579 40.909 0.00 0.00 0.00 3.56
6125 6590 4.584874 TCCGAAGTTTTCCTCATGCATTA 58.415 39.130 0.00 0.00 0.00 1.90
6126 6591 5.192927 TCCGAAGTTTTCCTCATGCATTAT 58.807 37.500 0.00 0.00 0.00 1.28
6127 6592 5.652014 TCCGAAGTTTTCCTCATGCATTATT 59.348 36.000 0.00 0.00 0.00 1.40
6128 6593 6.152661 TCCGAAGTTTTCCTCATGCATTATTT 59.847 34.615 0.00 0.00 0.00 1.40
6129 6594 6.813152 CCGAAGTTTTCCTCATGCATTATTTT 59.187 34.615 0.00 0.00 0.00 1.82
6130 6595 7.331687 CCGAAGTTTTCCTCATGCATTATTTTT 59.668 33.333 0.00 0.00 0.00 1.94
6153 6618 0.178068 AGAACGCCGATAAGTGCCAT 59.822 50.000 0.00 0.00 0.00 4.40
6245 6711 3.449018 TGTGTGGGCAAAACAAGTAATGT 59.551 39.130 0.00 0.00 46.82 2.71
6249 6715 3.900601 TGGGCAAAACAAGTAATGTCCAT 59.099 39.130 7.22 0.00 42.30 3.41
6253 6719 5.861787 GGCAAAACAAGTAATGTCCATACAC 59.138 40.000 0.00 0.00 42.99 2.90
6279 6746 1.279025 TTTTCCCCTCCCGATCCCTG 61.279 60.000 0.00 0.00 0.00 4.45
6281 6748 1.596006 TTCCCCTCCCGATCCCTGTA 61.596 60.000 0.00 0.00 0.00 2.74
6333 6800 3.376078 ACACGCCCCGTACGTCAT 61.376 61.111 15.21 0.00 42.96 3.06
6360 6827 1.523711 CATTATGGTCCCGCACGCT 60.524 57.895 0.00 0.00 0.00 5.07
6580 7048 8.370266 TGTATGGTCTGGTTTACTATAGTTGT 57.630 34.615 11.40 0.00 0.00 3.32
6608 7076 5.685520 TTTGAAAACTTTAGGGGTTTGCT 57.314 34.783 0.00 0.00 37.05 3.91
6698 7167 2.976882 AGGAGTTGCCACCTACTAACAA 59.023 45.455 0.00 0.00 40.02 2.83
6713 7182 5.395682 ACTAACAATAGACAGTTGCCGTA 57.604 39.130 0.00 0.00 33.15 4.02
6719 7188 0.815734 AGACAGTTGCCGTATAGCGT 59.184 50.000 0.00 0.00 39.32 5.07
6727 7196 4.092383 AGTTGCCGTATAGCGTTACAAAAG 59.908 41.667 1.01 0.00 39.32 2.27
6892 7370 2.292828 AAGCACATTAGGGCAGTTGT 57.707 45.000 0.00 0.00 0.00 3.32
6922 7400 1.479730 TGCAAAACACATGGCAAGTGA 59.520 42.857 27.55 2.77 40.16 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.444600 TTGGTTTCGCTTACTATTAAAGAGAAT 57.555 29.630 3.45 0.00 40.73 2.40
18 19 8.836268 TTGGTTTCGCTTACTATTAAAGAGAA 57.164 30.769 0.00 0.00 39.82 2.87
19 20 8.715088 GTTTGGTTTCGCTTACTATTAAAGAGA 58.285 33.333 0.00 0.00 31.99 3.10
20 21 7.961283 GGTTTGGTTTCGCTTACTATTAAAGAG 59.039 37.037 0.00 0.00 0.00 2.85
21 22 7.444792 TGGTTTGGTTTCGCTTACTATTAAAGA 59.555 33.333 0.00 0.00 0.00 2.52
22 23 7.586747 TGGTTTGGTTTCGCTTACTATTAAAG 58.413 34.615 0.00 0.00 0.00 1.85
23 24 7.507733 TGGTTTGGTTTCGCTTACTATTAAA 57.492 32.000 0.00 0.00 0.00 1.52
24 25 7.444792 TCTTGGTTTGGTTTCGCTTACTATTAA 59.555 33.333 0.00 0.00 0.00 1.40
25 26 6.935771 TCTTGGTTTGGTTTCGCTTACTATTA 59.064 34.615 0.00 0.00 0.00 0.98
26 27 5.766174 TCTTGGTTTGGTTTCGCTTACTATT 59.234 36.000 0.00 0.00 0.00 1.73
27 28 5.310451 TCTTGGTTTGGTTTCGCTTACTAT 58.690 37.500 0.00 0.00 0.00 2.12
28 29 4.706035 TCTTGGTTTGGTTTCGCTTACTA 58.294 39.130 0.00 0.00 0.00 1.82
29 30 3.547746 TCTTGGTTTGGTTTCGCTTACT 58.452 40.909 0.00 0.00 0.00 2.24
30 31 3.974871 TCTTGGTTTGGTTTCGCTTAC 57.025 42.857 0.00 0.00 0.00 2.34
31 32 5.048573 GGTATTCTTGGTTTGGTTTCGCTTA 60.049 40.000 0.00 0.00 0.00 3.09
32 33 4.261867 GGTATTCTTGGTTTGGTTTCGCTT 60.262 41.667 0.00 0.00 0.00 4.68
33 34 3.254903 GGTATTCTTGGTTTGGTTTCGCT 59.745 43.478 0.00 0.00 0.00 4.93
34 35 3.254903 AGGTATTCTTGGTTTGGTTTCGC 59.745 43.478 0.00 0.00 0.00 4.70
35 36 6.753107 ATAGGTATTCTTGGTTTGGTTTCG 57.247 37.500 0.00 0.00 0.00 3.46
36 37 7.363530 GGGAATAGGTATTCTTGGTTTGGTTTC 60.364 40.741 9.13 0.00 41.33 2.78
37 38 6.439375 GGGAATAGGTATTCTTGGTTTGGTTT 59.561 38.462 9.13 0.00 41.33 3.27
38 39 5.955959 GGGAATAGGTATTCTTGGTTTGGTT 59.044 40.000 9.13 0.00 41.33 3.67
39 40 5.255443 AGGGAATAGGTATTCTTGGTTTGGT 59.745 40.000 9.13 0.00 41.33 3.67
40 41 5.766590 AGGGAATAGGTATTCTTGGTTTGG 58.233 41.667 9.13 0.00 41.33 3.28
41 42 7.718334 AAAGGGAATAGGTATTCTTGGTTTG 57.282 36.000 9.13 0.00 41.33 2.93
90 91 8.816894 TCTCTTTAGATCGCCCAATTAATATCT 58.183 33.333 2.58 2.58 0.00 1.98
91 92 8.874816 GTCTCTTTAGATCGCCCAATTAATATC 58.125 37.037 0.00 0.00 33.30 1.63
97 98 3.433740 GGGTCTCTTTAGATCGCCCAATT 60.434 47.826 0.00 0.00 33.22 2.32
195 196 0.462375 TCATGATAACCCCGTCCGTG 59.538 55.000 0.00 0.00 0.00 4.94
211 212 1.750682 GCGGCTAAGGGGAAATGTCAT 60.751 52.381 0.00 0.00 0.00 3.06
285 591 2.610433 CAAGAAGATGAGCACGCTGTA 58.390 47.619 0.00 0.00 0.00 2.74
313 619 4.550076 TTCATTGGCCACTTTATTTGGG 57.450 40.909 3.88 0.00 34.35 4.12
353 659 3.422603 CGCGCATACTTTTGTTTACGTCT 60.423 43.478 8.75 0.00 0.00 4.18
368 674 2.335011 CCACGAGATCCGCGCATA 59.665 61.111 8.75 0.00 43.32 3.14
443 749 4.394712 CACCCTCTGACACGCCCC 62.395 72.222 0.00 0.00 0.00 5.80
445 751 3.537206 AAGCACCCTCTGACACGCC 62.537 63.158 0.00 0.00 0.00 5.68
446 752 2.031163 AAGCACCCTCTGACACGC 59.969 61.111 0.00 0.00 0.00 5.34
447 753 1.669115 CCAAGCACCCTCTGACACG 60.669 63.158 0.00 0.00 0.00 4.49
448 754 0.326264 ATCCAAGCACCCTCTGACAC 59.674 55.000 0.00 0.00 0.00 3.67
449 755 1.555075 GTATCCAAGCACCCTCTGACA 59.445 52.381 0.00 0.00 0.00 3.58
450 756 1.555075 TGTATCCAAGCACCCTCTGAC 59.445 52.381 0.00 0.00 0.00 3.51
451 757 1.951209 TGTATCCAAGCACCCTCTGA 58.049 50.000 0.00 0.00 0.00 3.27
452 758 2.636830 CTTGTATCCAAGCACCCTCTG 58.363 52.381 0.00 0.00 41.51 3.35
453 759 1.561542 CCTTGTATCCAAGCACCCTCT 59.438 52.381 0.00 0.00 45.57 3.69
454 760 1.408822 CCCTTGTATCCAAGCACCCTC 60.409 57.143 0.00 0.00 45.57 4.30
455 761 0.625849 CCCTTGTATCCAAGCACCCT 59.374 55.000 0.00 0.00 45.57 4.34
456 762 0.623723 TCCCTTGTATCCAAGCACCC 59.376 55.000 0.00 0.00 45.57 4.61
457 763 1.282157 AGTCCCTTGTATCCAAGCACC 59.718 52.381 0.00 0.00 45.57 5.01
458 764 2.789409 AGTCCCTTGTATCCAAGCAC 57.211 50.000 0.00 0.00 45.57 4.40
459 765 5.450818 AAATAGTCCCTTGTATCCAAGCA 57.549 39.130 0.00 0.00 45.57 3.91
460 766 6.775594 AAAAATAGTCCCTTGTATCCAAGC 57.224 37.500 0.00 0.00 45.57 4.01
461 767 9.110502 GACTAAAAATAGTCCCTTGTATCCAAG 57.889 37.037 4.96 0.00 40.86 3.61
462 768 8.832735 AGACTAAAAATAGTCCCTTGTATCCAA 58.167 33.333 11.35 0.00 45.66 3.53
463 769 8.265055 CAGACTAAAAATAGTCCCTTGTATCCA 58.735 37.037 11.35 0.00 45.66 3.41
464 770 8.483758 TCAGACTAAAAATAGTCCCTTGTATCC 58.516 37.037 11.35 0.00 45.66 2.59
465 771 9.315525 GTCAGACTAAAAATAGTCCCTTGTATC 57.684 37.037 11.35 0.00 45.66 2.24
466 772 9.047947 AGTCAGACTAAAAATAGTCCCTTGTAT 57.952 33.333 0.00 0.00 45.66 2.29
467 773 8.431910 AGTCAGACTAAAAATAGTCCCTTGTA 57.568 34.615 0.00 0.00 45.66 2.41
468 774 7.317722 AGTCAGACTAAAAATAGTCCCTTGT 57.682 36.000 0.00 0.00 45.66 3.16
469 775 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
488 794 9.654663 GCCTCTAAAAGAGACTATTTTTAGTCA 57.345 33.333 12.70 4.01 45.07 3.41
489 795 9.878667 AGCCTCTAAAAGAGACTATTTTTAGTC 57.121 33.333 12.70 5.24 45.07 2.59
496 802 9.878667 GAACTTTAGCCTCTAAAAGAGACTATT 57.121 33.333 5.50 0.00 45.07 1.73
497 803 8.479689 GGAACTTTAGCCTCTAAAAGAGACTAT 58.520 37.037 5.50 0.00 45.07 2.12
498 804 7.453752 TGGAACTTTAGCCTCTAAAAGAGACTA 59.546 37.037 5.50 0.91 45.07 2.59
499 805 6.270231 TGGAACTTTAGCCTCTAAAAGAGACT 59.730 38.462 5.50 1.89 45.07 3.24
500 806 6.465084 TGGAACTTTAGCCTCTAAAAGAGAC 58.535 40.000 5.50 0.00 45.07 3.36
501 807 6.681729 TGGAACTTTAGCCTCTAAAAGAGA 57.318 37.500 5.50 0.00 45.07 3.10
502 808 6.128145 GCTTGGAACTTTAGCCTCTAAAAGAG 60.128 42.308 2.08 0.00 41.96 2.85
503 809 5.705905 GCTTGGAACTTTAGCCTCTAAAAGA 59.294 40.000 2.08 0.00 36.43 2.52
504 810 5.473504 TGCTTGGAACTTTAGCCTCTAAAAG 59.526 40.000 0.00 0.00 38.41 2.27
505 811 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
506 812 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
507 813 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
508 814 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
509 815 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
510 816 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
511 817 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
512 818 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
513 819 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
514 820 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
515 821 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
516 822 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
517 823 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
518 824 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
519 825 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
520 826 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
521 827 1.440618 TTTAGTCAGGGGTGCTTGGA 58.559 50.000 0.00 0.00 0.00 3.53
522 828 2.286365 TTTTAGTCAGGGGTGCTTGG 57.714 50.000 0.00 0.00 0.00 3.61
523 829 3.486383 TCTTTTTAGTCAGGGGTGCTTG 58.514 45.455 0.00 0.00 0.00 4.01
524 830 3.498661 CCTCTTTTTAGTCAGGGGTGCTT 60.499 47.826 0.00 0.00 0.00 3.91
525 831 2.040412 CCTCTTTTTAGTCAGGGGTGCT 59.960 50.000 0.00 0.00 0.00 4.40
526 832 2.437413 CCTCTTTTTAGTCAGGGGTGC 58.563 52.381 0.00 0.00 0.00 5.01
527 833 2.040412 AGCCTCTTTTTAGTCAGGGGTG 59.960 50.000 0.00 0.00 32.47 4.61
528 834 2.349445 AGCCTCTTTTTAGTCAGGGGT 58.651 47.619 0.00 0.00 32.47 4.95
529 835 3.118223 CCTAGCCTCTTTTTAGTCAGGGG 60.118 52.174 0.00 0.00 33.13 4.79
530 836 3.775316 TCCTAGCCTCTTTTTAGTCAGGG 59.225 47.826 0.00 0.00 0.00 4.45
531 837 4.468153 AGTCCTAGCCTCTTTTTAGTCAGG 59.532 45.833 0.00 0.00 0.00 3.86
532 838 5.669164 AGTCCTAGCCTCTTTTTAGTCAG 57.331 43.478 0.00 0.00 0.00 3.51
533 839 6.254522 ACTAGTCCTAGCCTCTTTTTAGTCA 58.745 40.000 1.22 0.00 36.66 3.41
534 840 6.604396 AGACTAGTCCTAGCCTCTTTTTAGTC 59.396 42.308 19.38 0.00 36.66 2.59
535 841 6.495847 AGACTAGTCCTAGCCTCTTTTTAGT 58.504 40.000 19.38 0.00 36.66 2.24
536 842 7.122948 TCAAGACTAGTCCTAGCCTCTTTTTAG 59.877 40.741 19.38 0.00 36.66 1.85
537 843 6.952358 TCAAGACTAGTCCTAGCCTCTTTTTA 59.048 38.462 19.38 0.00 36.66 1.52
538 844 5.780793 TCAAGACTAGTCCTAGCCTCTTTTT 59.219 40.000 19.38 0.00 36.66 1.94
539 845 5.334421 TCAAGACTAGTCCTAGCCTCTTTT 58.666 41.667 19.38 0.17 36.66 2.27
540 846 4.936802 TCAAGACTAGTCCTAGCCTCTTT 58.063 43.478 19.38 0.91 36.66 2.52
541 847 4.532834 CTCAAGACTAGTCCTAGCCTCTT 58.467 47.826 19.38 1.65 36.66 2.85
542 848 3.117663 CCTCAAGACTAGTCCTAGCCTCT 60.118 52.174 19.38 0.00 36.66 3.69
543 849 3.219281 CCTCAAGACTAGTCCTAGCCTC 58.781 54.545 19.38 0.00 36.66 4.70
544 850 2.688515 GCCTCAAGACTAGTCCTAGCCT 60.689 54.545 19.38 0.00 36.66 4.58
545 851 1.684450 GCCTCAAGACTAGTCCTAGCC 59.316 57.143 19.38 0.89 36.66 3.93
546 852 2.661718 AGCCTCAAGACTAGTCCTAGC 58.338 52.381 19.38 14.54 36.66 3.42
547 853 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
548 854 7.126733 AGATTTTAGCCTCAAGACTAGTCCTA 58.873 38.462 19.38 9.39 0.00 2.94
549 855 5.961421 AGATTTTAGCCTCAAGACTAGTCCT 59.039 40.000 19.38 10.36 0.00 3.85
550 856 6.228616 AGATTTTAGCCTCAAGACTAGTCC 57.771 41.667 19.38 2.89 0.00 3.85
551 857 8.554835 AAAAGATTTTAGCCTCAAGACTAGTC 57.445 34.615 15.41 15.41 0.00 2.59
552 858 9.660180 CTAAAAGATTTTAGCCTCAAGACTAGT 57.340 33.333 11.10 0.00 41.97 2.57
566 872 8.950007 AGGTTTCCCATGACTAAAAGATTTTA 57.050 30.769 0.00 0.00 0.00 1.52
567 873 7.855784 AGGTTTCCCATGACTAAAAGATTTT 57.144 32.000 0.00 0.00 0.00 1.82
568 874 8.170730 AGTAGGTTTCCCATGACTAAAAGATTT 58.829 33.333 0.00 0.00 0.00 2.17
569 875 7.699878 AGTAGGTTTCCCATGACTAAAAGATT 58.300 34.615 0.00 0.00 0.00 2.40
570 876 7.272144 AGTAGGTTTCCCATGACTAAAAGAT 57.728 36.000 0.00 0.00 0.00 2.40
571 877 6.697641 AGTAGGTTTCCCATGACTAAAAGA 57.302 37.500 0.00 0.00 0.00 2.52
572 878 8.857694 TTTAGTAGGTTTCCCATGACTAAAAG 57.142 34.615 8.74 0.00 38.44 2.27
573 879 9.816787 ATTTTAGTAGGTTTCCCATGACTAAAA 57.183 29.630 19.00 19.00 45.07 1.52
577 883 8.557450 ACATATTTTAGTAGGTTTCCCATGACT 58.443 33.333 0.00 0.00 0.00 3.41
578 884 8.747538 ACATATTTTAGTAGGTTTCCCATGAC 57.252 34.615 0.00 0.00 0.00 3.06
596 902 9.243105 GGAGAGAGAGAGAGCTAATACATATTT 57.757 37.037 0.00 0.00 0.00 1.40
597 903 8.614814 AGGAGAGAGAGAGAGCTAATACATATT 58.385 37.037 0.00 0.00 0.00 1.28
598 904 8.162848 AGGAGAGAGAGAGAGCTAATACATAT 57.837 38.462 0.00 0.00 0.00 1.78
599 905 7.236640 TGAGGAGAGAGAGAGAGCTAATACATA 59.763 40.741 0.00 0.00 0.00 2.29
600 906 6.044287 TGAGGAGAGAGAGAGAGCTAATACAT 59.956 42.308 0.00 0.00 0.00 2.29
601 907 5.368230 TGAGGAGAGAGAGAGAGCTAATACA 59.632 44.000 0.00 0.00 0.00 2.29
602 908 5.865085 TGAGGAGAGAGAGAGAGCTAATAC 58.135 45.833 0.00 0.00 0.00 1.89
603 909 6.702449 ATGAGGAGAGAGAGAGAGCTAATA 57.298 41.667 0.00 0.00 0.00 0.98
604 910 5.589367 ATGAGGAGAGAGAGAGAGCTAAT 57.411 43.478 0.00 0.00 0.00 1.73
605 911 5.387113 AATGAGGAGAGAGAGAGAGCTAA 57.613 43.478 0.00 0.00 0.00 3.09
606 912 5.387113 AAATGAGGAGAGAGAGAGAGCTA 57.613 43.478 0.00 0.00 0.00 3.32
607 913 3.959495 AATGAGGAGAGAGAGAGAGCT 57.041 47.619 0.00 0.00 0.00 4.09
608 914 6.655078 ATTAAATGAGGAGAGAGAGAGAGC 57.345 41.667 0.00 0.00 0.00 4.09
609 915 7.506938 AGGAATTAAATGAGGAGAGAGAGAGAG 59.493 40.741 0.00 0.00 0.00 3.20
610 916 7.361438 AGGAATTAAATGAGGAGAGAGAGAGA 58.639 38.462 0.00 0.00 0.00 3.10
611 917 7.506938 AGAGGAATTAAATGAGGAGAGAGAGAG 59.493 40.741 0.00 0.00 0.00 3.20
612 918 7.361438 AGAGGAATTAAATGAGGAGAGAGAGA 58.639 38.462 0.00 0.00 0.00 3.10
613 919 7.255942 GGAGAGGAATTAAATGAGGAGAGAGAG 60.256 44.444 0.00 0.00 0.00 3.20
614 920 6.553100 GGAGAGGAATTAAATGAGGAGAGAGA 59.447 42.308 0.00 0.00 0.00 3.10
615 921 6.554605 AGGAGAGGAATTAAATGAGGAGAGAG 59.445 42.308 0.00 0.00 0.00 3.20
616 922 6.448202 AGGAGAGGAATTAAATGAGGAGAGA 58.552 40.000 0.00 0.00 0.00 3.10
617 923 6.745794 AGGAGAGGAATTAAATGAGGAGAG 57.254 41.667 0.00 0.00 0.00 3.20
618 924 7.846823 ACTAAGGAGAGGAATTAAATGAGGAGA 59.153 37.037 0.00 0.00 0.00 3.71
619 925 8.028652 ACTAAGGAGAGGAATTAAATGAGGAG 57.971 38.462 0.00 0.00 0.00 3.69
620 926 7.996758 ACTAAGGAGAGGAATTAAATGAGGA 57.003 36.000 0.00 0.00 0.00 3.71
621 927 8.490311 AGAACTAAGGAGAGGAATTAAATGAGG 58.510 37.037 0.00 0.00 0.00 3.86
622 928 9.323985 CAGAACTAAGGAGAGGAATTAAATGAG 57.676 37.037 0.00 0.00 0.00 2.90
623 929 8.267894 CCAGAACTAAGGAGAGGAATTAAATGA 58.732 37.037 0.00 0.00 0.00 2.57
624 930 8.267894 TCCAGAACTAAGGAGAGGAATTAAATG 58.732 37.037 0.00 0.00 0.00 2.32
625 931 8.393959 TCCAGAACTAAGGAGAGGAATTAAAT 57.606 34.615 0.00 0.00 0.00 1.40
626 932 7.808279 TCCAGAACTAAGGAGAGGAATTAAA 57.192 36.000 0.00 0.00 0.00 1.52
627 933 7.996758 ATCCAGAACTAAGGAGAGGAATTAA 57.003 36.000 0.00 0.00 37.34 1.40
628 934 7.147479 CCAATCCAGAACTAAGGAGAGGAATTA 60.147 40.741 0.00 0.00 37.34 1.40
629 935 6.353429 CCAATCCAGAACTAAGGAGAGGAATT 60.353 42.308 0.00 0.00 37.34 2.17
630 936 5.131809 CCAATCCAGAACTAAGGAGAGGAAT 59.868 44.000 0.00 0.00 37.34 3.01
631 937 4.471386 CCAATCCAGAACTAAGGAGAGGAA 59.529 45.833 0.00 0.00 37.34 3.36
632 938 4.033709 CCAATCCAGAACTAAGGAGAGGA 58.966 47.826 0.00 0.00 37.34 3.71
633 939 4.033709 TCCAATCCAGAACTAAGGAGAGG 58.966 47.826 0.00 0.00 37.34 3.69
634 940 4.100808 CCTCCAATCCAGAACTAAGGAGAG 59.899 50.000 7.12 0.00 42.87 3.20
635 941 4.033709 CCTCCAATCCAGAACTAAGGAGA 58.966 47.826 7.12 0.00 42.87 3.71
636 942 3.135530 CCCTCCAATCCAGAACTAAGGAG 59.864 52.174 0.00 0.00 40.58 3.69
637 943 3.115390 CCCTCCAATCCAGAACTAAGGA 58.885 50.000 0.00 0.00 38.50 3.36
638 944 2.846827 ACCCTCCAATCCAGAACTAAGG 59.153 50.000 0.00 0.00 0.00 2.69
639 945 4.576330 AACCCTCCAATCCAGAACTAAG 57.424 45.455 0.00 0.00 0.00 2.18
640 946 4.508405 CCAAACCCTCCAATCCAGAACTAA 60.508 45.833 0.00 0.00 0.00 2.24
641 947 3.010138 CCAAACCCTCCAATCCAGAACTA 59.990 47.826 0.00 0.00 0.00 2.24
642 948 2.225117 CCAAACCCTCCAATCCAGAACT 60.225 50.000 0.00 0.00 0.00 3.01
643 949 2.171003 CCAAACCCTCCAATCCAGAAC 58.829 52.381 0.00 0.00 0.00 3.01
644 950 2.041620 CTCCAAACCCTCCAATCCAGAA 59.958 50.000 0.00 0.00 0.00 3.02
645 951 1.635487 CTCCAAACCCTCCAATCCAGA 59.365 52.381 0.00 0.00 0.00 3.86
646 952 1.341383 CCTCCAAACCCTCCAATCCAG 60.341 57.143 0.00 0.00 0.00 3.86
647 953 0.704076 CCTCCAAACCCTCCAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
648 954 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
649 955 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
650 956 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
651 957 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
652 958 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
653 959 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
654 960 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
655 961 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
656 962 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
657 963 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
660 966 9.866655 AGTTATTGAGCATTTATTATCCTCCAA 57.133 29.630 0.00 0.00 0.00 3.53
693 999 8.204836 GCTTGGATCCAAATACTAAAGAGACTA 58.795 37.037 26.87 0.00 35.33 2.59
694 1000 7.051000 GCTTGGATCCAAATACTAAAGAGACT 58.949 38.462 26.87 0.00 35.33 3.24
695 1001 6.823689 TGCTTGGATCCAAATACTAAAGAGAC 59.176 38.462 26.87 8.83 35.33 3.36
696 1002 6.957631 TGCTTGGATCCAAATACTAAAGAGA 58.042 36.000 26.87 1.15 35.33 3.10
697 1003 7.255381 CCATGCTTGGATCCAAATACTAAAGAG 60.255 40.741 26.87 12.80 46.92 2.85
698 1004 6.547141 CCATGCTTGGATCCAAATACTAAAGA 59.453 38.462 26.87 1.90 46.92 2.52
699 1005 6.239120 CCCATGCTTGGATCCAAATACTAAAG 60.239 42.308 26.87 14.21 46.92 1.85
700 1006 5.598005 CCCATGCTTGGATCCAAATACTAAA 59.402 40.000 26.87 8.81 46.92 1.85
701 1007 5.139727 CCCATGCTTGGATCCAAATACTAA 58.860 41.667 26.87 10.11 46.92 2.24
702 1008 4.167892 ACCCATGCTTGGATCCAAATACTA 59.832 41.667 26.87 12.31 46.92 1.82
703 1009 3.052642 ACCCATGCTTGGATCCAAATACT 60.053 43.478 26.87 10.16 46.92 2.12
704 1010 3.068590 CACCCATGCTTGGATCCAAATAC 59.931 47.826 26.87 19.00 46.92 1.89
705 1011 3.053019 TCACCCATGCTTGGATCCAAATA 60.053 43.478 26.87 18.63 46.92 1.40
706 1012 2.112998 CACCCATGCTTGGATCCAAAT 58.887 47.619 26.87 16.27 46.92 2.32
707 1013 1.076841 TCACCCATGCTTGGATCCAAA 59.923 47.619 26.87 14.63 46.92 3.28
708 1014 0.703488 TCACCCATGCTTGGATCCAA 59.297 50.000 25.53 25.53 46.92 3.53
709 1015 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41
710 1016 0.548031 TCTCACCCATGCTTGGATCC 59.452 55.000 19.85 4.20 46.92 3.36
711 1017 1.211457 AGTCTCACCCATGCTTGGATC 59.789 52.381 19.85 3.99 46.92 3.36
712 1018 1.293062 AGTCTCACCCATGCTTGGAT 58.707 50.000 19.85 0.00 46.92 3.41
713 1019 1.833630 CTAGTCTCACCCATGCTTGGA 59.166 52.381 19.85 0.00 46.92 3.53
714 1020 1.745141 GCTAGTCTCACCCATGCTTGG 60.745 57.143 11.68 11.68 43.23 3.61
715 1021 1.065926 TGCTAGTCTCACCCATGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
716 1022 1.279496 TGCTAGTCTCACCCATGCTT 58.721 50.000 0.00 0.00 0.00 3.91
717 1023 1.209019 CTTGCTAGTCTCACCCATGCT 59.791 52.381 0.00 0.00 0.00 3.79
718 1024 1.065854 ACTTGCTAGTCTCACCCATGC 60.066 52.381 0.00 0.00 0.00 4.06
719 1025 3.340814 AACTTGCTAGTCTCACCCATG 57.659 47.619 0.07 0.00 31.99 3.66
720 1026 4.373156 AAAACTTGCTAGTCTCACCCAT 57.627 40.909 0.07 0.00 31.99 4.00
721 1027 3.857157 AAAACTTGCTAGTCTCACCCA 57.143 42.857 0.07 0.00 31.99 4.51
722 1028 4.895961 ACTAAAACTTGCTAGTCTCACCC 58.104 43.478 0.07 0.00 31.99 4.61
723 1029 4.930405 GGACTAAAACTTGCTAGTCTCACC 59.070 45.833 0.07 0.00 42.42 4.02
724 1030 4.930405 GGGACTAAAACTTGCTAGTCTCAC 59.070 45.833 0.07 0.00 42.76 3.51
725 1031 5.148651 GGGACTAAAACTTGCTAGTCTCA 57.851 43.478 0.07 0.00 42.76 3.27
726 1032 4.930405 GTGGGACTAAAACTTGCTAGTCTC 59.070 45.833 0.07 1.39 43.29 3.36
727 1033 4.593634 AGTGGGACTAAAACTTGCTAGTCT 59.406 41.667 0.07 0.00 42.42 3.24
728 1034 4.895961 AGTGGGACTAAAACTTGCTAGTC 58.104 43.478 0.07 0.62 42.17 2.59
729 1035 4.976540 AGTGGGACTAAAACTTGCTAGT 57.023 40.909 0.00 0.00 35.68 2.57
730 1036 6.038997 AGTAGTGGGACTAAAACTTGCTAG 57.961 41.667 0.00 0.00 31.62 3.42
731 1037 6.429521 AAGTAGTGGGACTAAAACTTGCTA 57.570 37.500 0.00 0.00 31.62 3.49
732 1038 4.976540 AGTAGTGGGACTAAAACTTGCT 57.023 40.909 0.00 0.00 31.62 3.91
733 1039 6.387041 AAAAGTAGTGGGACTAAAACTTGC 57.613 37.500 0.00 0.00 31.62 4.01
734 1040 8.672823 ACTAAAAGTAGTGGGACTAAAACTTG 57.327 34.615 0.00 0.00 39.20 3.16
735 1041 8.488668 TGACTAAAAGTAGTGGGACTAAAACTT 58.511 33.333 0.00 0.00 40.82 2.66
736 1042 8.026396 TGACTAAAAGTAGTGGGACTAAAACT 57.974 34.615 0.00 0.00 40.82 2.66
737 1043 8.718734 CATGACTAAAAGTAGTGGGACTAAAAC 58.281 37.037 0.00 0.00 40.82 2.43
738 1044 7.881232 CCATGACTAAAAGTAGTGGGACTAAAA 59.119 37.037 0.00 0.00 40.82 1.52
739 1045 7.391620 CCATGACTAAAAGTAGTGGGACTAAA 58.608 38.462 0.00 0.00 40.82 1.85
740 1046 6.942976 CCATGACTAAAAGTAGTGGGACTAA 58.057 40.000 0.00 0.00 40.82 2.24
741 1047 6.540438 CCATGACTAAAAGTAGTGGGACTA 57.460 41.667 0.00 0.00 40.82 2.59
742 1048 5.422214 CCATGACTAAAAGTAGTGGGACT 57.578 43.478 0.00 0.00 40.82 3.85
745 1051 4.514401 GTCCCATGACTAAAAGTAGTGGG 58.486 47.826 17.22 17.22 46.41 4.61
756 1062 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
758 1064 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
759 1065 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
760 1066 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
761 1067 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
762 1068 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
763 1069 3.602483 TGCTTGGATACGTTTTAGTCCC 58.398 45.455 0.00 0.00 42.51 4.46
764 1070 4.495844 GCATGCTTGGATACGTTTTAGTCC 60.496 45.833 11.37 0.00 42.51 3.85
765 1071 4.332819 AGCATGCTTGGATACGTTTTAGTC 59.667 41.667 16.30 0.00 42.51 2.59
766 1072 4.261801 AGCATGCTTGGATACGTTTTAGT 58.738 39.130 16.30 0.00 42.51 2.24
767 1073 4.572389 AGAGCATGCTTGGATACGTTTTAG 59.428 41.667 23.61 0.00 42.51 1.85
768 1074 4.513442 AGAGCATGCTTGGATACGTTTTA 58.487 39.130 23.61 0.00 42.51 1.52
769 1075 3.347216 AGAGCATGCTTGGATACGTTTT 58.653 40.909 23.61 0.00 42.51 2.43
770 1076 2.939103 GAGAGCATGCTTGGATACGTTT 59.061 45.455 23.61 0.00 42.51 3.60
771 1077 2.093500 TGAGAGCATGCTTGGATACGTT 60.093 45.455 23.61 0.00 42.51 3.99
772 1078 1.482182 TGAGAGCATGCTTGGATACGT 59.518 47.619 23.61 0.00 42.51 3.57
773 1079 2.133553 CTGAGAGCATGCTTGGATACG 58.866 52.381 23.61 3.40 42.51 3.06
774 1080 2.871022 CACTGAGAGCATGCTTGGATAC 59.129 50.000 23.61 7.76 0.00 2.24
775 1081 2.767960 TCACTGAGAGCATGCTTGGATA 59.232 45.455 23.61 6.30 0.00 2.59
776 1082 1.558294 TCACTGAGAGCATGCTTGGAT 59.442 47.619 23.61 8.54 0.00 3.41
777 1083 0.978907 TCACTGAGAGCATGCTTGGA 59.021 50.000 23.61 10.33 0.00 3.53
778 1084 1.085091 GTCACTGAGAGCATGCTTGG 58.915 55.000 23.61 14.11 0.00 3.61
779 1085 2.096220 AGTCACTGAGAGCATGCTTG 57.904 50.000 23.61 15.76 0.00 4.01
780 1086 2.830923 AGTAGTCACTGAGAGCATGCTT 59.169 45.455 23.61 11.87 32.25 3.91
781 1087 2.426738 GAGTAGTCACTGAGAGCATGCT 59.573 50.000 22.92 22.92 34.21 3.79
782 1088 2.165234 TGAGTAGTCACTGAGAGCATGC 59.835 50.000 10.51 10.51 34.21 4.06
783 1089 4.499526 GGATGAGTAGTCACTGAGAGCATG 60.500 50.000 1.37 0.00 34.75 4.06
784 1090 3.636300 GGATGAGTAGTCACTGAGAGCAT 59.364 47.826 1.37 0.00 34.75 3.79
785 1091 3.020274 GGATGAGTAGTCACTGAGAGCA 58.980 50.000 1.37 0.00 34.75 4.26
786 1092 3.020274 TGGATGAGTAGTCACTGAGAGC 58.980 50.000 1.37 0.00 34.75 4.09
787 1093 4.704540 AGTTGGATGAGTAGTCACTGAGAG 59.295 45.833 1.37 0.00 34.75 3.20
788 1094 4.460731 CAGTTGGATGAGTAGTCACTGAGA 59.539 45.833 1.37 0.00 34.75 3.27
789 1095 4.381398 CCAGTTGGATGAGTAGTCACTGAG 60.381 50.000 13.88 4.10 34.75 3.35
876 1183 1.588824 CCTGACGCGGTGGTACAGTA 61.589 60.000 12.47 0.00 41.80 2.74
877 1184 2.649034 CTGACGCGGTGGTACAGT 59.351 61.111 12.47 0.00 41.80 3.55
878 1185 2.126071 CCTGACGCGGTGGTACAG 60.126 66.667 12.47 9.55 41.80 2.74
879 1186 2.598099 TCCTGACGCGGTGGTACA 60.598 61.111 12.47 0.00 0.00 2.90
880 1187 2.181021 CTCCTGACGCGGTGGTAC 59.819 66.667 12.47 0.00 0.00 3.34
904 1211 4.015406 TGTAGTGGGGCTGTGGCG 62.015 66.667 0.00 0.00 39.81 5.69
941 1248 1.030488 CCGGTAGCTCTCTCGGTCAA 61.030 60.000 0.00 0.00 37.92 3.18
1300 1629 1.446272 CGACGAGCTCCTTGAACCC 60.446 63.158 8.47 0.00 0.00 4.11
1547 1898 7.702386 ACCAAATAAAAATCCAACTTGCAAAC 58.298 30.769 0.00 0.00 0.00 2.93
1581 1932 1.522668 TCCAAGCACACACACATAGC 58.477 50.000 0.00 0.00 0.00 2.97
1605 1956 9.255029 ACTATGTTGCCTCCAGTTTAATTAATT 57.745 29.630 5.89 5.89 0.00 1.40
1606 1957 8.823220 ACTATGTTGCCTCCAGTTTAATTAAT 57.177 30.769 0.00 0.00 0.00 1.40
1607 1958 9.742144 TTACTATGTTGCCTCCAGTTTAATTAA 57.258 29.630 0.00 0.00 0.00 1.40
1608 1959 9.914834 ATTACTATGTTGCCTCCAGTTTAATTA 57.085 29.630 0.00 0.00 0.00 1.40
1630 1981 7.919621 AGACAACATAGCGGAGTTAGTAATTAC 59.080 37.037 7.57 7.57 0.00 1.89
1631 1982 8.004087 AGACAACATAGCGGAGTTAGTAATTA 57.996 34.615 0.00 0.00 0.00 1.40
1632 1983 6.875076 AGACAACATAGCGGAGTTAGTAATT 58.125 36.000 0.00 0.00 0.00 1.40
1633 1984 6.096423 TGAGACAACATAGCGGAGTTAGTAAT 59.904 38.462 0.00 0.00 0.00 1.89
1634 1985 5.416639 TGAGACAACATAGCGGAGTTAGTAA 59.583 40.000 0.00 0.00 0.00 2.24
1635 1986 4.945543 TGAGACAACATAGCGGAGTTAGTA 59.054 41.667 0.00 0.00 0.00 1.82
1636 1987 3.762288 TGAGACAACATAGCGGAGTTAGT 59.238 43.478 0.00 0.00 0.00 2.24
1637 1988 4.371855 TGAGACAACATAGCGGAGTTAG 57.628 45.455 0.00 0.00 0.00 2.34
1638 1989 4.021807 TGTTGAGACAACATAGCGGAGTTA 60.022 41.667 12.32 0.00 31.49 2.24
1639 1990 3.244078 TGTTGAGACAACATAGCGGAGTT 60.244 43.478 12.32 0.00 31.49 3.01
1640 1991 2.299013 TGTTGAGACAACATAGCGGAGT 59.701 45.455 12.32 0.00 31.49 3.85
1641 1992 2.959516 TGTTGAGACAACATAGCGGAG 58.040 47.619 12.32 0.00 31.49 4.63
1642 1993 3.610040 ATGTTGAGACAACATAGCGGA 57.390 42.857 22.78 0.87 38.94 5.54
1734 2085 6.659242 TCTTTTGGGTTTCATCTCCATAAGAC 59.341 38.462 9.33 0.00 40.80 3.01
1942 2294 4.018050 AGACCCTTGCTCATTTTCCACTAT 60.018 41.667 0.00 0.00 0.00 2.12
2143 2496 1.688311 CGGTATCCTCCACCTCCTTCA 60.688 57.143 0.00 0.00 33.62 3.02
2717 3070 1.073763 TCAGCAACCACCAGCTTATGT 59.926 47.619 0.00 0.00 39.50 2.29
2748 3101 2.264480 CCGCTGGACACGAATCCA 59.736 61.111 11.15 11.15 46.92 3.41
2944 3297 1.352352 CTTTGCTTCTCCTTCCCCTGA 59.648 52.381 0.00 0.00 0.00 3.86
3147 3500 0.323629 CCTTCCTTCGTGCCTAACCA 59.676 55.000 0.00 0.00 0.00 3.67
3198 3551 1.000486 CCCTCGTCTTCCTCTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
3273 3626 4.999950 CCGCCATCTATGCTTAATCTCTTT 59.000 41.667 0.00 0.00 0.00 2.52
3306 3659 2.158475 TCTCCCCATTGAACAGCTTGTT 60.158 45.455 1.82 1.82 44.37 2.83
3348 3701 5.045359 TGGTCTCATCAAAGGAGTCATTCAT 60.045 40.000 0.00 0.00 34.04 2.57
3450 3803 1.533187 ATGGGGATACAATCAGGGCA 58.467 50.000 0.00 0.00 39.74 5.36
3492 3845 5.245301 TGGTTAGCCATACTATCGCTATGTT 59.755 40.000 0.00 0.00 40.46 2.71
3740 4094 2.442236 AAATGGCTTCCATGGTCGAT 57.558 45.000 12.58 2.61 44.40 3.59
3874 4228 3.288092 GGGACTTTGTGTTTCTCCAAGT 58.712 45.455 0.00 0.00 0.00 3.16
3952 4307 1.864711 CGGTGTCGACATCACTTGTTT 59.135 47.619 27.32 0.00 39.18 2.83
4094 4449 1.217585 CTAGCACCACATCATCCGCG 61.218 60.000 0.00 0.00 0.00 6.46
4365 4726 1.153086 GGCGCCACTTCATCCATCT 60.153 57.895 24.80 0.00 0.00 2.90
4575 4936 6.968263 ATCTCGTATATCATCATTCCGGAT 57.032 37.500 4.15 0.00 0.00 4.18
4670 5031 0.689080 CTGGAGCTTCTGGAGGCCTA 60.689 60.000 4.42 0.00 33.44 3.93
4743 5104 2.571653 ACTCCTCCCATGTCAAAATCGA 59.428 45.455 0.00 0.00 0.00 3.59
4782 5145 5.011090 TCTTTGTCGATACTCCAATCCTG 57.989 43.478 0.00 0.00 0.00 3.86
4965 5328 7.985752 ACTAGTAATTACTATGTTGCCTCCAAC 59.014 37.037 22.51 0.00 42.85 3.77
4966 5329 8.086143 ACTAGTAATTACTATGTTGCCTCCAA 57.914 34.615 22.51 1.51 38.06 3.53
4967 5330 7.670605 ACTAGTAATTACTATGTTGCCTCCA 57.329 36.000 22.51 1.69 38.06 3.86
4968 5331 8.827677 CAAACTAGTAATTACTATGTTGCCTCC 58.172 37.037 24.99 0.00 38.06 4.30
4969 5332 9.379791 ACAAACTAGTAATTACTATGTTGCCTC 57.620 33.333 28.08 2.35 38.06 4.70
4983 5445 8.630054 TTCTGCACCAATAACAAACTAGTAAT 57.370 30.769 0.00 0.00 0.00 1.89
4984 5446 7.934665 TCTTCTGCACCAATAACAAACTAGTAA 59.065 33.333 0.00 0.00 0.00 2.24
4985 5447 7.446769 TCTTCTGCACCAATAACAAACTAGTA 58.553 34.615 0.00 0.00 0.00 1.82
4986 5448 6.296026 TCTTCTGCACCAATAACAAACTAGT 58.704 36.000 0.00 0.00 0.00 2.57
4987 5449 6.128172 CCTCTTCTGCACCAATAACAAACTAG 60.128 42.308 0.00 0.00 0.00 2.57
5327 5789 1.645710 TCCTCTTCCTTCCACAGGTC 58.354 55.000 0.00 0.00 44.37 3.85
5387 5849 1.337447 CCCGAAGTTGACGTACACCAT 60.337 52.381 0.00 0.00 0.00 3.55
5557 6022 2.125912 GTCGACAGCATGCTCCGT 60.126 61.111 27.73 20.67 42.53 4.69
5718 6183 0.108804 CTCCGTGCACTTGTACCGAT 60.109 55.000 16.19 0.00 0.00 4.18
5749 6214 1.846439 ACATCGTCCCCAATCTCCATT 59.154 47.619 0.00 0.00 0.00 3.16
5785 6250 1.179174 TCTCCCGTATCATGGCCTCG 61.179 60.000 3.32 0.00 0.00 4.63
5961 6426 7.464830 ACCTTTGTGATAAATAGAATCGTCG 57.535 36.000 0.00 0.00 0.00 5.12
5963 6428 9.886132 AACTACCTTTGTGATAAATAGAATCGT 57.114 29.630 0.00 0.00 0.00 3.73
6004 6469 3.526931 ATCGTTCGTGATCTTCCATGT 57.473 42.857 0.00 0.00 0.00 3.21
6005 6470 4.864916 AAATCGTTCGTGATCTTCCATG 57.135 40.909 0.00 0.00 0.00 3.66
6006 6471 6.516718 AGATAAATCGTTCGTGATCTTCCAT 58.483 36.000 0.00 0.00 0.00 3.41
6007 6472 5.902681 AGATAAATCGTTCGTGATCTTCCA 58.097 37.500 0.00 0.00 0.00 3.53
6008 6473 6.210078 AGAGATAAATCGTTCGTGATCTTCC 58.790 40.000 0.00 0.00 0.00 3.46
6010 6475 9.239002 CTTTAGAGATAAATCGTTCGTGATCTT 57.761 33.333 0.00 0.00 0.00 2.40
6011 6476 8.622157 TCTTTAGAGATAAATCGTTCGTGATCT 58.378 33.333 0.00 0.00 0.00 2.75
6035 6500 7.348080 TGTAATAAATCCATCGTCTCTGTCT 57.652 36.000 0.00 0.00 0.00 3.41
6036 6501 7.116948 CCATGTAATAAATCCATCGTCTCTGTC 59.883 40.741 0.00 0.00 0.00 3.51
6037 6502 6.931281 CCATGTAATAAATCCATCGTCTCTGT 59.069 38.462 0.00 0.00 0.00 3.41
6038 6503 6.369890 CCCATGTAATAAATCCATCGTCTCTG 59.630 42.308 0.00 0.00 0.00 3.35
6080 6545 3.818961 AACAATGTTCTGCTCGATGTG 57.181 42.857 0.00 0.00 0.00 3.21
6086 6551 3.067106 TCGGAGAAACAATGTTCTGCTC 58.933 45.455 0.00 7.02 42.15 4.26
6087 6552 3.126001 TCGGAGAAACAATGTTCTGCT 57.874 42.857 0.00 0.00 42.15 4.24
6091 6556 5.685954 GGAAAACTTCGGAGAAACAATGTTC 59.314 40.000 0.00 0.00 45.90 3.18
6099 6564 3.502211 GCATGAGGAAAACTTCGGAGAAA 59.498 43.478 0.00 0.00 45.90 2.52
6105 6570 7.816945 AAAATAATGCATGAGGAAAACTTCG 57.183 32.000 0.00 0.00 0.00 3.79
6129 6594 3.125658 GGCACTTATCGGCGTTCTAAAAA 59.874 43.478 6.85 0.00 0.00 1.94
6130 6595 2.674357 GGCACTTATCGGCGTTCTAAAA 59.326 45.455 6.85 0.00 0.00 1.52
6153 6618 7.400599 ACAGATTTCCTAACATCTACACGTA 57.599 36.000 0.00 0.00 0.00 3.57
6205 6670 3.439857 ACATAGATGTGTGGGCTGTTT 57.560 42.857 0.00 0.00 40.03 2.83
6299 6766 3.061563 GCGTGTGTGCGTTATCTATTTCA 59.938 43.478 0.00 0.00 0.00 2.69
6333 6800 1.414919 GGGACCATAATGTACGAGGCA 59.585 52.381 0.00 0.00 0.00 4.75
6343 6810 1.227556 GAGCGTGCGGGACCATAAT 60.228 57.895 0.00 0.00 0.00 1.28
6345 6812 3.845259 GGAGCGTGCGGGACCATA 61.845 66.667 0.00 0.00 0.00 2.74
6500 6968 5.868454 TCTGGAACTTTTGACATGAGATGA 58.132 37.500 0.00 0.00 0.00 2.92
6580 7048 7.610580 AACCCCTAAAGTTTTCAAATCATGA 57.389 32.000 0.00 0.00 35.85 3.07
6608 7076 5.667466 GCAACTGCCTAATGTTAGTAGGTA 58.333 41.667 4.51 0.00 40.38 3.08
6650 7119 8.006298 AGGTTTTCAAATCATGACAACTGTAA 57.994 30.769 0.00 0.00 44.51 2.41
6698 7167 3.284323 CGCTATACGGCAACTGTCTAT 57.716 47.619 0.00 0.00 38.44 1.98
6713 7182 3.377172 GCCATGTCCTTTTGTAACGCTAT 59.623 43.478 0.00 0.00 0.00 2.97
6719 7188 5.344743 TGTTTTGCCATGTCCTTTTGTAA 57.655 34.783 0.00 0.00 0.00 2.41
6727 7196 3.110447 ACATGTTGTTTTGCCATGTCC 57.890 42.857 0.00 0.00 44.27 4.02
6803 7275 3.181487 GCCATGTATTTTGCAGGGTACAG 60.181 47.826 11.20 3.01 39.69 2.74
6880 7357 3.326588 AGTGTACATGACAACTGCCCTAA 59.673 43.478 0.00 0.00 40.66 2.69
6892 7370 4.261530 CCATGTGTTTTGCAGTGTACATGA 60.262 41.667 25.05 7.03 44.85 3.07
6922 7400 1.149101 ATCTCCCACACCCAAGTTGT 58.851 50.000 1.45 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.