Multiple sequence alignment - TraesCS3B01G197100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G197100
chr3B
100.000
3602
0
0
725
4326
224281914
224278313
0.000000e+00
6652.0
1
TraesCS3B01G197100
chr3B
96.762
3243
74
7
1086
4326
223663312
223660099
0.000000e+00
5378.0
2
TraesCS3B01G197100
chr3B
92.347
2718
149
29
888
3594
224317408
224314739
0.000000e+00
3812.0
3
TraesCS3B01G197100
chr3B
100.000
292
0
0
1
292
224282638
224282347
1.370000e-149
540.0
4
TraesCS3B01G197100
chr3B
96.552
290
10
0
3
292
828550747
828550458
8.410000e-132
481.0
5
TraesCS3B01G197100
chr3B
94.863
292
15
0
1
292
745711870
745712161
1.420000e-124
457.0
6
TraesCS3B01G197100
chr3B
94.521
292
16
0
1
292
761666690
761666981
6.600000e-123
451.0
7
TraesCS3B01G197100
chr3B
94.178
292
17
0
1
292
734988715
734988424
3.070000e-121
446.0
8
TraesCS3B01G197100
chr3B
93.590
234
15
0
888
1121
224155983
224155750
2.480000e-92
350.0
9
TraesCS3B01G197100
chr3B
97.041
169
5
0
922
1090
223669342
223669174
7.080000e-73
285.0
10
TraesCS3B01G197100
chr3B
100.000
41
0
0
888
928
223674686
223674646
4.640000e-10
76.8
11
TraesCS3B01G197100
chr3B
95.349
43
2
0
1115
1157
224150154
224150112
7.760000e-08
69.4
12
TraesCS3B01G197100
chr3D
96.633
1574
39
5
888
2459
152848777
152847216
0.000000e+00
2601.0
13
TraesCS3B01G197100
chr3D
93.224
1579
85
9
888
2458
153082013
153080449
0.000000e+00
2303.0
14
TraesCS3B01G197100
chr3D
91.175
1575
75
24
2484
4029
153080352
153078813
0.000000e+00
2080.0
15
TraesCS3B01G197100
chr3D
96.184
1022
24
3
2460
3475
152847186
152846174
0.000000e+00
1657.0
16
TraesCS3B01G197100
chr3D
84.892
556
47
13
3472
4008
152846072
152845535
1.070000e-145
527.0
17
TraesCS3B01G197100
chr3A
96.139
1580
46
3
882
2459
177673979
177675545
0.000000e+00
2566.0
18
TraesCS3B01G197100
chr3A
92.875
1586
84
12
882
2458
177107102
177108667
0.000000e+00
2276.0
19
TraesCS3B01G197100
chr3A
89.754
1181
75
11
2481
3654
177109062
177110203
0.000000e+00
1469.0
20
TraesCS3B01G197100
chr3A
94.553
716
21
4
2512
3209
177675569
177676284
0.000000e+00
1090.0
21
TraesCS3B01G197100
chr3A
84.091
792
55
31
3273
4005
177676286
177677065
0.000000e+00
699.0
22
TraesCS3B01G197100
chr3A
96.970
165
5
0
3865
4029
177110651
177110815
1.180000e-70
278.0
23
TraesCS3B01G197100
chr1B
96.564
291
10
0
1
291
565941161
565941451
2.340000e-132
483.0
24
TraesCS3B01G197100
chr1B
95.890
292
12
0
1
292
329301642
329301933
1.410000e-129
473.0
25
TraesCS3B01G197100
chr1B
94.464
289
16
0
1
289
66280836
66280548
3.070000e-121
446.0
26
TraesCS3B01G197100
chr4B
95.548
292
13
0
1
292
644327247
644327538
6.550000e-128
468.0
27
TraesCS3B01G197100
chr4B
88.525
61
6
1
2441
2500
665610791
665610851
6.000000e-09
73.1
28
TraesCS3B01G197100
chr7B
94.178
292
17
0
1
292
673588413
673588704
3.070000e-121
446.0
29
TraesCS3B01G197100
chr5B
89.310
290
31
0
4037
4326
138555377
138555088
8.840000e-97
364.0
30
TraesCS3B01G197100
chr5B
100.000
50
0
0
801
850
670800081
670800130
4.610000e-15
93.5
31
TraesCS3B01G197100
chr5B
96.078
51
1
1
801
851
377343912
377343961
9.970000e-12
82.4
32
TraesCS3B01G197100
chr5B
97.872
47
1
0
2460
2506
440022866
440022912
9.970000e-12
82.4
33
TraesCS3B01G197100
chr5D
88.112
286
34
0
4037
4322
125775360
125775075
1.490000e-89
340.0
34
TraesCS3B01G197100
chr2D
91.071
56
3
2
2458
2513
647818464
647818411
1.670000e-09
75.0
35
TraesCS3B01G197100
chr5A
88.525
61
6
1
2441
2500
705592547
705592607
6.000000e-09
73.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G197100
chr3B
224278313
224282638
4325
True
3596.000000
6652
100.000000
1
4326
2
chr3B.!!$R9
4325
1
TraesCS3B01G197100
chr3B
223660099
223663312
3213
True
5378.000000
5378
96.762000
1086
4326
1
chr3B.!!$R1
3240
2
TraesCS3B01G197100
chr3B
224314739
224317408
2669
True
3812.000000
3812
92.347000
888
3594
1
chr3B.!!$R6
2706
3
TraesCS3B01G197100
chr3D
153078813
153082013
3200
True
2191.500000
2303
92.199500
888
4029
2
chr3D.!!$R2
3141
4
TraesCS3B01G197100
chr3D
152845535
152848777
3242
True
1595.000000
2601
92.569667
888
4008
3
chr3D.!!$R1
3120
5
TraesCS3B01G197100
chr3A
177673979
177677065
3086
False
1451.666667
2566
91.594333
882
4005
3
chr3A.!!$F2
3123
6
TraesCS3B01G197100
chr3A
177107102
177110815
3713
False
1341.000000
2276
93.199667
882
4029
3
chr3A.!!$F1
3147
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
864
865
0.455815
GCGGGGTGCCAAAGATTAAG
59.544
55.0
0.00
0.00
37.76
1.85
F
2184
2211
0.745128
TTGGGGCGTAATTGGCTACG
60.745
55.0
0.89
0.89
45.89
3.51
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2838
3271
1.804748
GAAGAATTTCCTCCGTTGCGT
59.195
47.619
0.0
0.0
0.0
5.24
R
4125
4908
0.035881
CCTCTTCAGCACCTTGAGCA
59.964
55.000
0.0
0.0
0.0
4.26
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
111
112
4.293648
CACGCACCACCGGAGTCA
62.294
66.667
9.46
0.00
0.00
3.41
112
113
3.991051
ACGCACCACCGGAGTCAG
61.991
66.667
9.46
3.83
0.00
3.51
113
114
4.742201
CGCACCACCGGAGTCAGG
62.742
72.222
9.46
7.88
0.00
3.86
115
116
4.742201
CACCACCGGAGTCAGGCG
62.742
72.222
9.46
0.00
0.00
5.52
122
123
4.767255
GGAGTCAGGCGCCACTGG
62.767
72.222
31.54
15.18
38.98
4.00
239
240
4.593864
GAGGATCGCCGGAGTGCC
62.594
72.222
5.05
8.44
39.96
5.01
750
751
3.707189
GGGGGAGGAGAGGGGGAA
61.707
72.222
0.00
0.00
0.00
3.97
751
752
2.040359
GGGGAGGAGAGGGGGAAG
60.040
72.222
0.00
0.00
0.00
3.46
752
753
2.040359
GGGAGGAGAGGGGGAAGG
60.040
72.222
0.00
0.00
0.00
3.46
753
754
2.040359
GGAGGAGAGGGGGAAGGG
60.040
72.222
0.00
0.00
0.00
3.95
754
755
2.040359
GAGGAGAGGGGGAAGGGG
60.040
72.222
0.00
0.00
0.00
4.79
755
756
2.543637
AGGAGAGGGGGAAGGGGA
60.544
66.667
0.00
0.00
0.00
4.81
756
757
2.040359
GGAGAGGGGGAAGGGGAG
60.040
72.222
0.00
0.00
0.00
4.30
757
758
2.647949
GGAGAGGGGGAAGGGGAGA
61.648
68.421
0.00
0.00
0.00
3.71
758
759
1.074850
GAGAGGGGGAAGGGGAGAG
60.075
68.421
0.00
0.00
0.00
3.20
759
760
2.040359
GAGGGGGAAGGGGAGAGG
60.040
72.222
0.00
0.00
0.00
3.69
760
761
3.711782
AGGGGGAAGGGGAGAGGG
61.712
72.222
0.00
0.00
0.00
4.30
761
762
4.845307
GGGGGAAGGGGAGAGGGG
62.845
77.778
0.00
0.00
0.00
4.79
762
763
4.845307
GGGGAAGGGGAGAGGGGG
62.845
77.778
0.00
0.00
0.00
5.40
763
764
3.707189
GGGAAGGGGAGAGGGGGA
61.707
72.222
0.00
0.00
0.00
4.81
764
765
2.040359
GGAAGGGGAGAGGGGGAG
60.040
72.222
0.00
0.00
0.00
4.30
765
766
2.040359
GAAGGGGAGAGGGGGAGG
60.040
72.222
0.00
0.00
0.00
4.30
766
767
3.711782
AAGGGGAGAGGGGGAGGG
61.712
72.222
0.00
0.00
0.00
4.30
769
770
4.179599
GGGAGAGGGGGAGGGGAG
62.180
77.778
0.00
0.00
0.00
4.30
770
771
4.890306
GGAGAGGGGGAGGGGAGC
62.890
77.778
0.00
0.00
0.00
4.70
841
842
4.304432
CCTAGGGAGGGGAGCTTC
57.696
66.667
0.00
0.00
39.48
3.86
842
843
1.834822
CCTAGGGAGGGGAGCTTCG
60.835
68.421
0.00
0.00
39.48
3.79
843
844
2.444140
TAGGGAGGGGAGCTTCGC
60.444
66.667
0.00
0.00
0.00
4.70
861
862
3.061848
CGCGGGGTGCCAAAGATT
61.062
61.111
0.00
0.00
42.08
2.40
862
863
1.747367
CGCGGGGTGCCAAAGATTA
60.747
57.895
0.00
0.00
42.08
1.75
863
864
1.309499
CGCGGGGTGCCAAAGATTAA
61.309
55.000
0.00
0.00
42.08
1.40
864
865
0.455815
GCGGGGTGCCAAAGATTAAG
59.544
55.000
0.00
0.00
37.76
1.85
865
866
1.953311
GCGGGGTGCCAAAGATTAAGA
60.953
52.381
0.00
0.00
37.76
2.10
866
867
2.654863
CGGGGTGCCAAAGATTAAGAT
58.345
47.619
0.00
0.00
0.00
2.40
867
868
2.618709
CGGGGTGCCAAAGATTAAGATC
59.381
50.000
0.00
0.00
0.00
2.75
868
869
3.685550
CGGGGTGCCAAAGATTAAGATCT
60.686
47.826
0.00
0.00
44.51
2.75
930
931
2.715880
TCCATGGCTTATCATTGGGCTA
59.284
45.455
6.96
0.00
0.00
3.93
937
938
5.222192
TGGCTTATCATTGGGCTATCAGAAT
60.222
40.000
0.00
0.00
0.00
2.40
1003
1004
1.918262
AGAACTTGGGATCTGCCATGA
59.082
47.619
10.03
0.00
38.95
3.07
1064
1065
3.941483
CGATCAGCAGGGTGAGTAATTTT
59.059
43.478
7.30
0.00
0.00
1.82
1171
1172
5.804944
CTGGTGATCTCCAGTCATTATCT
57.195
43.478
28.32
0.00
46.92
1.98
1172
1173
6.172136
CTGGTGATCTCCAGTCATTATCTT
57.828
41.667
28.32
0.00
46.92
2.40
1173
1174
5.922053
TGGTGATCTCCAGTCATTATCTTG
58.078
41.667
12.50
0.00
33.19
3.02
1855
1872
6.038356
TCTACAACCGCTACTTAAAGCATAC
58.962
40.000
0.38
0.00
42.91
2.39
2059
2080
8.746922
TGATTTGAATGAGTTGCACTAAATTC
57.253
30.769
0.00
2.19
34.47
2.17
2184
2211
0.745128
TTGGGGCGTAATTGGCTACG
60.745
55.000
0.89
0.89
45.89
3.51
2838
3271
9.719355
TGCTTTAGATCACTGTATGTTCTTTTA
57.281
29.630
0.00
0.00
38.20
1.52
3194
3628
1.136147
CTTGGAGCTGCATTGACGC
59.864
57.895
9.39
0.00
0.00
5.19
3259
3693
0.878086
GCCTAGCTGTTCGGCTGATC
60.878
60.000
15.35
0.00
43.01
2.92
3442
3877
1.621672
GCCAGCAGGAAGGTAGCTCT
61.622
60.000
0.00
0.00
36.26
4.09
3443
3878
0.463620
CCAGCAGGAAGGTAGCTCTC
59.536
60.000
0.00
0.00
36.26
3.20
3486
3921
7.071069
ACATGCATATACTTGAATGAGAGGA
57.929
36.000
0.00
0.00
36.33
3.71
3488
3923
7.660617
ACATGCATATACTTGAATGAGAGGAAG
59.339
37.037
0.00
0.00
36.33
3.46
3489
3924
7.365497
TGCATATACTTGAATGAGAGGAAGA
57.635
36.000
0.00
0.00
0.00
2.87
3490
3925
7.440198
TGCATATACTTGAATGAGAGGAAGAG
58.560
38.462
0.00
0.00
0.00
2.85
3491
3926
7.070447
TGCATATACTTGAATGAGAGGAAGAGT
59.930
37.037
0.00
0.00
0.00
3.24
3492
3927
7.384660
GCATATACTTGAATGAGAGGAAGAGTG
59.615
40.741
0.00
0.00
0.00
3.51
3493
3928
3.936564
ACTTGAATGAGAGGAAGAGTGC
58.063
45.455
0.00
0.00
0.00
4.40
3494
3929
3.326006
ACTTGAATGAGAGGAAGAGTGCA
59.674
43.478
0.00
0.00
0.00
4.57
3495
3930
4.202398
ACTTGAATGAGAGGAAGAGTGCAA
60.202
41.667
0.00
0.00
0.00
4.08
3509
4050
4.446371
AGAGTGCAATAGCTGACATTACC
58.554
43.478
0.00
0.00
42.74
2.85
3538
4079
4.605640
AAGCAATGGCAAAACTGTGTAT
57.394
36.364
0.00
0.00
44.61
2.29
3974
4756
4.340617
TCTTTCCAACCAAACACAAGAGT
58.659
39.130
0.00
0.00
0.00
3.24
4029
4812
3.255642
ACCAAACAGATGAATGAAACCGG
59.744
43.478
0.00
0.00
0.00
5.28
4032
4815
2.711542
ACAGATGAATGAAACCGGTCC
58.288
47.619
8.04
3.33
0.00
4.46
4063
4846
4.347583
TGGAAGGGCAAGTTGATGAATTTT
59.652
37.500
7.16
0.00
0.00
1.82
4072
4855
1.543607
TGATGAATTTTGCAGGCCGA
58.456
45.000
0.00
0.00
0.00
5.54
4073
4856
2.101783
TGATGAATTTTGCAGGCCGAT
58.898
42.857
0.00
0.00
0.00
4.18
4100
4883
1.664965
GTGCGAACGGTGCTCTCTT
60.665
57.895
0.00
0.00
0.00
2.85
4101
4884
1.372997
TGCGAACGGTGCTCTCTTC
60.373
57.895
0.00
0.00
0.00
2.87
4117
4900
0.890996
CTTCCCTGCCAACTTTCGCT
60.891
55.000
0.00
0.00
0.00
4.93
4118
4901
0.467290
TTCCCTGCCAACTTTCGCTT
60.467
50.000
0.00
0.00
0.00
4.68
4119
4902
0.467290
TCCCTGCCAACTTTCGCTTT
60.467
50.000
0.00
0.00
0.00
3.51
4120
4903
0.318955
CCCTGCCAACTTTCGCTTTG
60.319
55.000
0.00
0.00
0.00
2.77
4121
4904
0.667993
CCTGCCAACTTTCGCTTTGA
59.332
50.000
0.00
0.00
0.00
2.69
4122
4905
1.600413
CCTGCCAACTTTCGCTTTGAC
60.600
52.381
0.00
0.00
0.00
3.18
4123
4906
1.065401
CTGCCAACTTTCGCTTTGACA
59.935
47.619
0.00
0.00
0.00
3.58
4124
4907
1.065401
TGCCAACTTTCGCTTTGACAG
59.935
47.619
0.00
0.00
0.00
3.51
4125
4908
1.065551
GCCAACTTTCGCTTTGACAGT
59.934
47.619
0.00
0.00
39.28
3.55
4126
4909
2.719798
CCAACTTTCGCTTTGACAGTG
58.280
47.619
0.00
0.00
37.67
3.66
4127
4910
2.111756
CAACTTTCGCTTTGACAGTGC
58.888
47.619
0.00
0.00
37.67
4.40
4128
4911
1.668419
ACTTTCGCTTTGACAGTGCT
58.332
45.000
0.00
0.00
36.28
4.40
4129
4912
1.599542
ACTTTCGCTTTGACAGTGCTC
59.400
47.619
0.00
0.00
36.28
4.26
4130
4913
1.599071
CTTTCGCTTTGACAGTGCTCA
59.401
47.619
0.00
0.00
32.41
4.26
4131
4914
1.662517
TTCGCTTTGACAGTGCTCAA
58.337
45.000
4.62
4.62
32.41
3.02
4132
4915
1.220529
TCGCTTTGACAGTGCTCAAG
58.779
50.000
7.77
1.31
31.76
3.02
4133
4916
0.236711
CGCTTTGACAGTGCTCAAGG
59.763
55.000
10.91
10.91
31.76
3.61
4137
4920
0.181114
TTGACAGTGCTCAAGGTGCT
59.819
50.000
4.62
0.00
0.00
4.40
4206
4989
3.482783
GCAGGACGAAGCGCTGAC
61.483
66.667
12.58
7.85
0.00
3.51
4228
5011
0.459489
GTGGAAAGTGCAAAGTGGCA
59.541
50.000
0.00
0.00
42.53
4.92
4318
5101
2.565841
GCCCTAAGACTATGCTGGTTG
58.434
52.381
0.00
0.00
0.00
3.77
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
94
95
4.293648
TGACTCCGGTGGTGCGTG
62.294
66.667
8.63
0.00
0.00
5.34
95
96
3.991051
CTGACTCCGGTGGTGCGT
61.991
66.667
8.63
0.00
0.00
5.24
96
97
4.742201
CCTGACTCCGGTGGTGCG
62.742
72.222
8.63
0.00
0.00
5.34
98
99
4.742201
CGCCTGACTCCGGTGGTG
62.742
72.222
8.63
4.22
0.00
4.17
105
106
4.767255
CCAGTGGCGCCTGACTCC
62.767
72.222
29.70
8.28
34.23
3.85
220
221
4.271816
CACTCCGGCGATCCTCGG
62.272
72.222
9.30
13.39
46.89
4.63
221
222
4.933064
GCACTCCGGCGATCCTCG
62.933
72.222
9.30
0.00
43.89
4.63
222
223
4.593864
GGCACTCCGGCGATCCTC
62.594
72.222
9.30
0.00
33.57
3.71
733
734
3.707189
TTCCCCCTCTCCTCCCCC
61.707
72.222
0.00
0.00
0.00
5.40
734
735
2.040359
CTTCCCCCTCTCCTCCCC
60.040
72.222
0.00
0.00
0.00
4.81
735
736
2.040359
CCTTCCCCCTCTCCTCCC
60.040
72.222
0.00
0.00
0.00
4.30
736
737
2.040359
CCCTTCCCCCTCTCCTCC
60.040
72.222
0.00
0.00
0.00
4.30
737
738
2.040359
CCCCTTCCCCCTCTCCTC
60.040
72.222
0.00
0.00
0.00
3.71
738
739
2.543637
TCCCCTTCCCCCTCTCCT
60.544
66.667
0.00
0.00
0.00
3.69
739
740
2.040359
CTCCCCTTCCCCCTCTCC
60.040
72.222
0.00
0.00
0.00
3.71
740
741
1.074850
CTCTCCCCTTCCCCCTCTC
60.075
68.421
0.00
0.00
0.00
3.20
741
742
2.652113
CCTCTCCCCTTCCCCCTCT
61.652
68.421
0.00
0.00
0.00
3.69
742
743
2.040359
CCTCTCCCCTTCCCCCTC
60.040
72.222
0.00
0.00
0.00
4.30
743
744
3.711782
CCCTCTCCCCTTCCCCCT
61.712
72.222
0.00
0.00
0.00
4.79
744
745
4.845307
CCCCTCTCCCCTTCCCCC
62.845
77.778
0.00
0.00
0.00
5.40
745
746
4.845307
CCCCCTCTCCCCTTCCCC
62.845
77.778
0.00
0.00
0.00
4.81
746
747
3.707189
TCCCCCTCTCCCCTTCCC
61.707
72.222
0.00
0.00
0.00
3.97
747
748
2.040359
CTCCCCCTCTCCCCTTCC
60.040
72.222
0.00
0.00
0.00
3.46
748
749
2.040359
CCTCCCCCTCTCCCCTTC
60.040
72.222
0.00
0.00
0.00
3.46
749
750
3.711782
CCCTCCCCCTCTCCCCTT
61.712
72.222
0.00
0.00
0.00
3.95
752
753
4.179599
CTCCCCTCCCCCTCTCCC
62.180
77.778
0.00
0.00
0.00
4.30
753
754
4.890306
GCTCCCCTCCCCCTCTCC
62.890
77.778
0.00
0.00
0.00
3.71
815
816
1.693103
CCTCCCTAGGGTTCCCACC
60.693
68.421
27.58
0.00
43.37
4.61
816
817
4.068257
CCTCCCTAGGGTTCCCAC
57.932
66.667
27.58
0.00
39.48
4.61
824
825
1.834822
CGAAGCTCCCCTCCCTAGG
60.835
68.421
0.06
0.06
43.25
3.02
825
826
3.863606
CGAAGCTCCCCTCCCTAG
58.136
66.667
0.00
0.00
0.00
3.02
844
845
1.309499
TTAATCTTTGGCACCCCGCG
61.309
55.000
0.00
0.00
43.84
6.46
845
846
0.455815
CTTAATCTTTGGCACCCCGC
59.544
55.000
0.00
0.00
41.28
6.13
846
847
2.122783
TCTTAATCTTTGGCACCCCG
57.877
50.000
0.00
0.00
0.00
5.73
847
848
3.903467
AGATCTTAATCTTTGGCACCCC
58.097
45.455
0.00
0.00
39.27
4.95
862
863
9.579932
AAAGACCACTAGAAATGAAAAGATCTT
57.420
29.630
0.88
0.88
0.00
2.40
863
864
9.579932
AAAAGACCACTAGAAATGAAAAGATCT
57.420
29.630
0.00
0.00
0.00
2.75
864
865
9.833182
GAAAAGACCACTAGAAATGAAAAGATC
57.167
33.333
0.00
0.00
0.00
2.75
865
866
9.579932
AGAAAAGACCACTAGAAATGAAAAGAT
57.420
29.630
0.00
0.00
0.00
2.40
866
867
8.980481
AGAAAAGACCACTAGAAATGAAAAGA
57.020
30.769
0.00
0.00
0.00
2.52
868
869
9.847224
ACTAGAAAAGACCACTAGAAATGAAAA
57.153
29.630
0.00
0.00
37.58
2.29
869
870
9.273016
CACTAGAAAAGACCACTAGAAATGAAA
57.727
33.333
0.00
0.00
37.58
2.69
870
871
7.878127
CCACTAGAAAAGACCACTAGAAATGAA
59.122
37.037
0.00
0.00
37.58
2.57
871
872
7.016268
ACCACTAGAAAAGACCACTAGAAATGA
59.984
37.037
0.00
0.00
37.58
2.57
872
873
7.162082
ACCACTAGAAAAGACCACTAGAAATG
58.838
38.462
0.00
0.00
37.58
2.32
873
874
7.235812
AGACCACTAGAAAAGACCACTAGAAAT
59.764
37.037
0.00
0.00
37.58
2.17
874
875
6.553852
AGACCACTAGAAAAGACCACTAGAAA
59.446
38.462
0.00
0.00
37.58
2.52
875
876
6.075984
AGACCACTAGAAAAGACCACTAGAA
58.924
40.000
0.00
0.00
37.58
2.10
876
877
5.642165
AGACCACTAGAAAAGACCACTAGA
58.358
41.667
0.00
0.00
37.58
2.43
877
878
5.986501
AGACCACTAGAAAAGACCACTAG
57.013
43.478
0.00
0.00
39.32
2.57
878
879
6.553852
AGAAAGACCACTAGAAAAGACCACTA
59.446
38.462
0.00
0.00
0.00
2.74
879
880
5.367060
AGAAAGACCACTAGAAAAGACCACT
59.633
40.000
0.00
0.00
0.00
4.00
880
881
5.612351
AGAAAGACCACTAGAAAAGACCAC
58.388
41.667
0.00
0.00
0.00
4.16
881
882
5.602978
AGAGAAAGACCACTAGAAAAGACCA
59.397
40.000
0.00
0.00
0.00
4.02
882
883
6.104146
AGAGAAAGACCACTAGAAAAGACC
57.896
41.667
0.00
0.00
0.00
3.85
883
884
9.713713
AAATAGAGAAAGACCACTAGAAAAGAC
57.286
33.333
0.00
0.00
0.00
3.01
884
885
9.930693
GAAATAGAGAAAGACCACTAGAAAAGA
57.069
33.333
0.00
0.00
0.00
2.52
885
886
9.157104
GGAAATAGAGAAAGACCACTAGAAAAG
57.843
37.037
0.00
0.00
0.00
2.27
886
887
8.656806
TGGAAATAGAGAAAGACCACTAGAAAA
58.343
33.333
0.00
0.00
0.00
2.29
1003
1004
8.687292
ATCATTGCATCTATAACAACATCTGT
57.313
30.769
0.00
0.00
41.27
3.41
1064
1065
2.158769
ACAAGGTGAGACAAGATGCACA
60.159
45.455
0.00
0.00
33.09
4.57
1162
1163
5.533903
AGCCATTGATGACCAAGATAATGAC
59.466
40.000
0.00
0.00
38.31
3.06
1163
1164
5.533528
CAGCCATTGATGACCAAGATAATGA
59.466
40.000
0.00
0.00
38.31
2.57
1164
1165
5.301045
ACAGCCATTGATGACCAAGATAATG
59.699
40.000
0.00
0.00
38.31
1.90
1165
1166
5.452255
ACAGCCATTGATGACCAAGATAAT
58.548
37.500
0.00
0.00
38.31
1.28
1166
1167
4.858850
ACAGCCATTGATGACCAAGATAA
58.141
39.130
0.00
0.00
38.31
1.75
1167
1168
4.508551
ACAGCCATTGATGACCAAGATA
57.491
40.909
0.00
0.00
38.31
1.98
1168
1169
3.377253
ACAGCCATTGATGACCAAGAT
57.623
42.857
0.00
0.00
38.31
2.40
1169
1170
2.885135
ACAGCCATTGATGACCAAGA
57.115
45.000
0.00
0.00
38.31
3.02
1170
1171
2.947652
CCTACAGCCATTGATGACCAAG
59.052
50.000
0.00
0.00
38.31
3.61
1171
1172
2.357050
CCCTACAGCCATTGATGACCAA
60.357
50.000
0.00
0.00
39.41
3.67
1172
1173
1.212688
CCCTACAGCCATTGATGACCA
59.787
52.381
0.00
0.00
0.00
4.02
1173
1174
1.477558
CCCCTACAGCCATTGATGACC
60.478
57.143
0.00
0.00
0.00
4.02
1362
1375
7.512130
AGCACTATCAATATTCTGACCATCAA
58.488
34.615
0.00
0.00
0.00
2.57
1750
1763
2.752030
CCTCCAGATGTAGAACCTCCA
58.248
52.381
0.00
0.00
0.00
3.86
1891
1908
6.016024
ACATTTGCAGAAGATAAACAGCTTGA
60.016
34.615
0.00
0.00
0.00
3.02
2059
2080
8.352942
GGCTTATACCAAAAATACCAAGATGAG
58.647
37.037
0.00
0.00
0.00
2.90
2838
3271
1.804748
GAAGAATTTCCTCCGTTGCGT
59.195
47.619
0.00
0.00
0.00
5.24
3194
3628
1.391485
CGACGAGATGTTCAAAGCTGG
59.609
52.381
0.00
0.00
0.00
4.85
3465
3900
7.070447
ACTCTTCCTCTCATTCAAGTATATGCA
59.930
37.037
0.00
0.00
0.00
3.96
3475
3910
4.564782
ATTGCACTCTTCCTCTCATTCA
57.435
40.909
0.00
0.00
0.00
2.57
3476
3911
4.511082
GCTATTGCACTCTTCCTCTCATTC
59.489
45.833
0.00
0.00
39.41
2.67
3477
3912
4.163839
AGCTATTGCACTCTTCCTCTCATT
59.836
41.667
1.12
0.00
42.74
2.57
3478
3913
3.710677
AGCTATTGCACTCTTCCTCTCAT
59.289
43.478
1.12
0.00
42.74
2.90
3480
3915
3.131933
TCAGCTATTGCACTCTTCCTCTC
59.868
47.826
1.12
0.00
42.74
3.20
3481
3916
3.102972
TCAGCTATTGCACTCTTCCTCT
58.897
45.455
1.12
0.00
42.74
3.69
3482
3917
3.194062
GTCAGCTATTGCACTCTTCCTC
58.806
50.000
1.12
0.00
42.74
3.71
3483
3918
2.568956
TGTCAGCTATTGCACTCTTCCT
59.431
45.455
1.12
0.00
42.74
3.36
3484
3919
2.977914
TGTCAGCTATTGCACTCTTCC
58.022
47.619
1.12
0.00
42.74
3.46
3485
3920
5.007136
GGTAATGTCAGCTATTGCACTCTTC
59.993
44.000
1.12
0.00
42.74
2.87
3486
3921
4.878397
GGTAATGTCAGCTATTGCACTCTT
59.122
41.667
1.12
0.00
42.74
2.85
3488
3923
4.191544
TGGTAATGTCAGCTATTGCACTC
58.808
43.478
1.12
0.00
42.74
3.51
3489
3924
4.220693
TGGTAATGTCAGCTATTGCACT
57.779
40.909
1.12
0.00
42.74
4.40
3490
3925
4.731773
GCTTGGTAATGTCAGCTATTGCAC
60.732
45.833
1.12
0.00
42.74
4.57
3491
3926
3.378112
GCTTGGTAATGTCAGCTATTGCA
59.622
43.478
1.12
0.00
42.74
4.08
3492
3927
3.546815
CGCTTGGTAATGTCAGCTATTGC
60.547
47.826
0.00
0.00
40.05
3.56
3493
3928
3.623060
ACGCTTGGTAATGTCAGCTATTG
59.377
43.478
0.00
0.00
0.00
1.90
3494
3929
3.873910
ACGCTTGGTAATGTCAGCTATT
58.126
40.909
0.00
0.00
0.00
1.73
3495
3930
3.543680
ACGCTTGGTAATGTCAGCTAT
57.456
42.857
0.00
0.00
0.00
2.97
3509
4050
2.063156
TTGCCATTGCTTAACGCTTG
57.937
45.000
0.00
0.00
40.11
4.01
3538
4079
6.183360
ACACATGTTCTTGCAAGTACATTTGA
60.183
34.615
41.31
24.39
42.28
2.69
4032
4815
0.682209
CTTGCCCTTCCATCCCACAG
60.682
60.000
0.00
0.00
0.00
3.66
4063
4846
2.983030
AAAACGCATCGGCCTGCA
60.983
55.556
16.45
0.00
42.40
4.41
4072
4855
1.369930
CGTTCGCACCAAAACGCAT
60.370
52.632
0.00
0.00
41.34
4.73
4073
4856
2.023461
CGTTCGCACCAAAACGCA
59.977
55.556
0.00
0.00
41.34
5.24
4079
4862
2.970324
GAGCACCGTTCGCACCAA
60.970
61.111
0.00
0.00
0.00
3.67
4100
4883
0.467290
AAAGCGAAAGTTGGCAGGGA
60.467
50.000
0.82
0.00
34.07
4.20
4101
4884
0.318955
CAAAGCGAAAGTTGGCAGGG
60.319
55.000
0.82
0.00
34.07
4.45
4117
4900
1.024271
GCACCTTGAGCACTGTCAAA
58.976
50.000
0.00
0.00
36.01
2.69
4118
4901
0.181114
AGCACCTTGAGCACTGTCAA
59.819
50.000
0.00
0.00
35.16
3.18
4119
4902
0.533531
CAGCACCTTGAGCACTGTCA
60.534
55.000
0.00
0.00
0.00
3.58
4120
4903
0.250038
TCAGCACCTTGAGCACTGTC
60.250
55.000
0.00
0.00
0.00
3.51
4121
4904
0.181114
TTCAGCACCTTGAGCACTGT
59.819
50.000
0.00
0.00
0.00
3.55
4122
4905
0.873054
CTTCAGCACCTTGAGCACTG
59.127
55.000
0.00
0.00
0.00
3.66
4123
4906
0.761187
TCTTCAGCACCTTGAGCACT
59.239
50.000
0.00
0.00
0.00
4.40
4124
4907
1.155042
CTCTTCAGCACCTTGAGCAC
58.845
55.000
0.00
0.00
0.00
4.40
4125
4908
0.035881
CCTCTTCAGCACCTTGAGCA
59.964
55.000
0.00
0.00
0.00
4.26
4126
4909
0.676151
CCCTCTTCAGCACCTTGAGC
60.676
60.000
0.00
0.00
0.00
4.26
4127
4910
0.689623
ACCCTCTTCAGCACCTTGAG
59.310
55.000
0.00
0.00
0.00
3.02
4128
4911
1.623811
GTACCCTCTTCAGCACCTTGA
59.376
52.381
0.00
0.00
0.00
3.02
4129
4912
1.625818
AGTACCCTCTTCAGCACCTTG
59.374
52.381
0.00
0.00
0.00
3.61
4130
4913
1.625818
CAGTACCCTCTTCAGCACCTT
59.374
52.381
0.00
0.00
0.00
3.50
4131
4914
1.203187
TCAGTACCCTCTTCAGCACCT
60.203
52.381
0.00
0.00
0.00
4.00
4132
4915
1.267121
TCAGTACCCTCTTCAGCACC
58.733
55.000
0.00
0.00
0.00
5.01
4133
4916
2.354203
CCTTCAGTACCCTCTTCAGCAC
60.354
54.545
0.00
0.00
0.00
4.40
4137
4920
4.081642
CGATTTCCTTCAGTACCCTCTTCA
60.082
45.833
0.00
0.00
0.00
3.02
4206
4989
0.030638
CACTTTGCACTTTCCACCCG
59.969
55.000
0.00
0.00
0.00
5.28
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.