Multiple sequence alignment - TraesCS3B01G196400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G196400 chr3B 100.000 4434 0 0 512 4945 223039273 223034840 0.000000e+00 8189.0
1 TraesCS3B01G196400 chr3B 100.000 330 0 0 1 330 223039784 223039455 1.180000e-170 610.0
2 TraesCS3B01G196400 chr3B 98.387 124 2 0 4821 4944 223029684 223029807 8.330000e-53 219.0
3 TraesCS3B01G196400 chr3A 95.942 1725 53 11 1746 3461 178131444 178133160 0.000000e+00 2782.0
4 TraesCS3B01G196400 chr3A 91.921 1411 57 17 3556 4944 178133223 178134598 0.000000e+00 1921.0
5 TraesCS3B01G196400 chr3A 84.146 656 51 26 797 1423 178130605 178131236 1.980000e-163 586.0
6 TraesCS3B01G196400 chr3A 87.264 212 20 5 1486 1695 178131244 178131450 8.280000e-58 235.0
7 TraesCS3B01G196400 chr3A 90.476 126 11 1 3449 3573 272609 272734 1.100000e-36 165.0
8 TraesCS3B01G196400 chr3D 93.487 1735 91 10 1746 3460 152557468 152555736 0.000000e+00 2558.0
9 TraesCS3B01G196400 chr3D 92.095 797 35 8 4163 4944 152555139 152554356 0.000000e+00 1098.0
10 TraesCS3B01G196400 chr3D 82.274 1038 63 37 695 1695 152558415 152557462 0.000000e+00 785.0
11 TraesCS3B01G196400 chr3D 90.602 415 27 7 3568 3973 152555740 152555329 1.570000e-149 540.0
12 TraesCS3B01G196400 chr3D 95.361 194 8 1 1 194 427514 427322 1.730000e-79 307.0
13 TraesCS3B01G196400 chr3D 95.312 192 8 1 3994 4185 152555333 152555143 2.240000e-78 303.0
14 TraesCS3B01G196400 chr3D 89.706 136 10 4 3436 3569 609106177 609106310 2.370000e-38 171.0
15 TraesCS3B01G196400 chr3D 86.986 146 19 0 184 329 503045383 503045238 1.100000e-36 165.0
16 TraesCS3B01G196400 chr3D 100.000 31 0 0 3826 3856 24079705 24079675 1.920000e-04 58.4
17 TraesCS3B01G196400 chr1A 100.000 330 0 0 1 330 559804525 559804196 1.180000e-170 610.0
18 TraesCS3B01G196400 chr1A 100.000 168 0 0 518 685 559804136 559803969 1.340000e-80 311.0
19 TraesCS3B01G196400 chr1A 92.063 126 7 3 3453 3576 459516789 459516913 1.830000e-39 174.0
20 TraesCS3B01G196400 chr1B 99.695 328 0 1 1 328 641522199 641522525 2.550000e-167 599.0
21 TraesCS3B01G196400 chr1B 97.688 173 4 0 512 684 641522660 641522832 1.040000e-76 298.0
22 TraesCS3B01G196400 chr2D 90.274 329 9 2 1 329 355324221 355323916 4.610000e-110 409.0
23 TraesCS3B01G196400 chr2D 92.742 124 4 1 513 631 355323840 355323717 1.830000e-39 174.0
24 TraesCS3B01G196400 chr2D 86.986 146 19 0 184 329 482358418 482358273 1.100000e-36 165.0
25 TraesCS3B01G196400 chr2D 89.474 133 10 4 3452 3582 586154808 586154938 1.100000e-36 165.0
26 TraesCS3B01G196400 chr2D 100.000 30 0 0 3809 3838 164534162 164534133 6.920000e-04 56.5
27 TraesCS3B01G196400 chr4D 89.666 329 10 3 1 329 504546493 504546797 9.970000e-107 398.0
28 TraesCS3B01G196400 chr4D 94.350 177 5 1 513 684 504546872 504547048 2.930000e-67 267.0
29 TraesCS3B01G196400 chr4D 87.671 146 18 0 184 329 440250226 440250371 2.370000e-38 171.0
30 TraesCS3B01G196400 chr4A 87.415 294 10 8 2 295 556686497 556686231 3.720000e-81 313.0
31 TraesCS3B01G196400 chr4A 94.839 155 8 0 532 686 556685848 556685694 4.950000e-60 243.0
32 TraesCS3B01G196400 chr7A 90.769 195 16 2 1 194 19747224 19747417 4.910000e-65 259.0
33 TraesCS3B01G196400 chr7A 90.385 156 11 2 533 684 19747598 19747753 8.390000e-48 202.0
34 TraesCS3B01G196400 chr7A 84.783 92 13 1 595 686 284615487 284615397 1.900000e-14 91.6
35 TraesCS3B01G196400 chr7D 93.296 179 5 2 513 686 266874091 266874267 1.770000e-64 257.0
36 TraesCS3B01G196400 chr7D 90.256 195 12 4 1 194 266873736 266873924 1.060000e-61 248.0
37 TraesCS3B01G196400 chr7D 97.183 142 4 0 188 329 266873874 266874015 1.780000e-59 241.0
38 TraesCS3B01G196400 chr7D 87.805 123 15 0 4292 4414 535728030 535727908 1.430000e-30 145.0
39 TraesCS3B01G196400 chr7D 97.059 34 1 0 3705 3738 74596194 74596161 1.920000e-04 58.4
40 TraesCS3B01G196400 chr4B 94.048 168 9 1 1 168 668869130 668869296 2.280000e-63 254.0
41 TraesCS3B01G196400 chr4B 90.972 144 8 3 533 672 668869481 668869623 6.530000e-44 189.0
42 TraesCS3B01G196400 chr4B 91.803 122 9 1 3450 3570 173716098 173716219 8.510000e-38 169.0
43 TraesCS3B01G196400 chr6B 90.066 151 9 5 533 679 141667462 141667314 1.820000e-44 191.0
44 TraesCS3B01G196400 chr1D 93.220 118 7 1 3453 3569 332264921 332265038 6.580000e-39 172.0
45 TraesCS3B01G196400 chr7B 92.437 119 8 1 3453 3570 81425106 81424988 8.510000e-38 169.0
46 TraesCS3B01G196400 chr7B 90.244 123 12 0 4292 4414 577563655 577563533 1.420000e-35 161.0
47 TraesCS3B01G196400 chr5A 92.437 119 8 1 3453 3570 445766187 445766069 8.510000e-38 169.0
48 TraesCS3B01G196400 chr5A 92.437 119 8 1 3453 3570 446022573 446022455 8.510000e-38 169.0
49 TraesCS3B01G196400 chr5D 87.324 142 18 0 188 329 35325200 35325059 3.960000e-36 163.0
50 TraesCS3B01G196400 chr2A 96.970 33 1 0 3806 3838 186399699 186399731 6.920000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G196400 chr3B 223034840 223039784 4944 True 4399.500000 8189 100.000000 1 4945 2 chr3B.!!$R1 4944
1 TraesCS3B01G196400 chr3A 178130605 178134598 3993 False 1381.000000 2782 89.818250 797 4944 4 chr3A.!!$F2 4147
2 TraesCS3B01G196400 chr3D 152554356 152558415 4059 True 1056.800000 2558 90.754000 695 4944 5 chr3D.!!$R4 4249
3 TraesCS3B01G196400 chr1A 559803969 559804525 556 True 460.500000 610 100.000000 1 685 2 chr1A.!!$R1 684
4 TraesCS3B01G196400 chr1B 641522199 641522832 633 False 448.500000 599 98.691500 1 684 2 chr1B.!!$F1 683
5 TraesCS3B01G196400 chr2D 355323717 355324221 504 True 291.500000 409 91.508000 1 631 2 chr2D.!!$R3 630
6 TraesCS3B01G196400 chr4D 504546493 504547048 555 False 332.500000 398 92.008000 1 684 2 chr4D.!!$F2 683
7 TraesCS3B01G196400 chr4A 556685694 556686497 803 True 278.000000 313 91.127000 2 686 2 chr4A.!!$R1 684
8 TraesCS3B01G196400 chr7A 19747224 19747753 529 False 230.500000 259 90.577000 1 684 2 chr7A.!!$F1 683
9 TraesCS3B01G196400 chr7D 266873736 266874267 531 False 248.666667 257 93.578333 1 686 3 chr7D.!!$F1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 1019 0.033504 CTCGCTACCACCACTTGTGT 59.966 55.000 0.00 0.00 43.85 3.72 F
1451 1783 0.177141 CCTTGAAATGGCCATGGCTG 59.823 55.000 34.70 14.53 41.60 4.85 F
1526 1858 0.320683 TCAGATGACACTGGTTGGCG 60.321 55.000 0.00 0.00 34.92 5.69 F
1599 1932 0.470766 TGGTGGCCGATGGGTATTAC 59.529 55.000 0.00 0.00 34.97 1.89 F
1951 2292 0.928229 AGTTGCGAACACGTTGACTC 59.072 50.000 0.00 0.00 0.00 3.36 F
2619 2972 1.002033 CTGAAGCAGTCAACTGTTGCC 60.002 52.381 15.52 4.39 45.45 4.52 F
2949 3302 1.235724 CCGTTGAAAGTTCTCACCCC 58.764 55.000 0.00 0.00 0.00 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1916 1.053424 GGAGTAATACCCATCGGCCA 58.947 55.000 2.24 0.00 0.00 5.36 R
2949 3302 0.321653 CAGTTTCCCCCTTCTGTCCG 60.322 60.000 0.00 0.00 0.00 4.79 R
3138 3491 1.669795 GGCCCTTTCGCAATCACAAAG 60.670 52.381 0.00 0.00 0.00 2.77 R
3552 3906 0.038744 AGGTACTCCTTCCGTCCGAA 59.961 55.000 0.00 0.00 42.12 4.30 R
3553 3907 1.687612 AGGTACTCCTTCCGTCCGA 59.312 57.895 0.00 0.00 42.12 4.55 R
3921 4284 2.160219 ACGCACTTGTACATCTGCATTG 59.840 45.455 19.78 9.99 0.00 2.82 R
4676 5072 0.034059 CAGAGAACGTGAGCACCCTT 59.966 55.000 0.00 0.00 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
686 968 3.197790 CGCAGATCACCGCCCTTG 61.198 66.667 0.00 0.00 0.00 3.61
687 969 2.825836 GCAGATCACCGCCCTTGG 60.826 66.667 0.00 0.00 0.00 3.61
688 970 2.825836 CAGATCACCGCCCTTGGC 60.826 66.667 0.00 0.00 46.75 4.52
710 992 2.892852 CCAATGCCCTCACTCTTTTTCA 59.107 45.455 0.00 0.00 0.00 2.69
719 1001 4.077822 CTCACTCTTTTTCAAGGATGCCT 58.922 43.478 0.00 0.00 33.87 4.75
729 1011 1.972660 AAGGATGCCTCGCTACCACC 61.973 60.000 0.00 0.00 30.89 4.61
730 1012 2.731571 GGATGCCTCGCTACCACCA 61.732 63.158 0.00 0.00 0.00 4.17
733 1015 1.553690 ATGCCTCGCTACCACCACTT 61.554 55.000 0.00 0.00 0.00 3.16
734 1016 1.741770 GCCTCGCTACCACCACTTG 60.742 63.158 0.00 0.00 0.00 3.16
735 1017 1.671742 CCTCGCTACCACCACTTGT 59.328 57.895 0.00 0.00 0.00 3.16
736 1018 0.670546 CCTCGCTACCACCACTTGTG 60.671 60.000 0.00 0.00 45.01 3.33
737 1019 0.033504 CTCGCTACCACCACTTGTGT 59.966 55.000 0.00 0.00 43.85 3.72
738 1020 1.271379 CTCGCTACCACCACTTGTGTA 59.729 52.381 0.00 0.00 43.85 2.90
739 1021 1.897133 TCGCTACCACCACTTGTGTAT 59.103 47.619 0.00 0.00 43.85 2.29
740 1022 1.999735 CGCTACCACCACTTGTGTATG 59.000 52.381 0.00 0.00 43.85 2.39
741 1023 1.737793 GCTACCACCACTTGTGTATGC 59.262 52.381 0.00 0.00 43.85 3.14
742 1024 2.356135 CTACCACCACTTGTGTATGCC 58.644 52.381 0.00 0.00 43.85 4.40
743 1025 0.476338 ACCACCACTTGTGTATGCCA 59.524 50.000 0.00 0.00 43.85 4.92
744 1026 1.133637 ACCACCACTTGTGTATGCCAA 60.134 47.619 0.00 0.00 43.85 4.52
745 1027 2.170166 CCACCACTTGTGTATGCCAAT 58.830 47.619 0.00 0.00 43.85 3.16
746 1028 3.245087 ACCACCACTTGTGTATGCCAATA 60.245 43.478 0.00 0.00 43.85 1.90
778 1060 5.767816 ATAACTTGCCGTCACTTTCTTTT 57.232 34.783 0.00 0.00 0.00 2.27
810 1092 9.716556 TCCTAAAATAAGAGTACAAGGAGATCT 57.283 33.333 0.00 0.00 0.00 2.75
812 1094 9.672086 CTAAAATAAGAGTACAAGGAGATCTCG 57.328 37.037 16.46 5.64 0.00 4.04
835 1117 1.005294 GACACGCTTCGGCTCGTAAA 61.005 55.000 0.00 0.00 37.14 2.01
836 1118 1.280206 ACACGCTTCGGCTCGTAAAC 61.280 55.000 0.00 0.00 37.14 2.01
839 1121 0.731514 CGCTTCGGCTCGTAAACAGA 60.732 55.000 0.00 0.00 39.13 3.41
840 1122 0.714439 GCTTCGGCTCGTAAACAGAC 59.286 55.000 0.00 0.00 38.08 3.51
953 1242 1.334054 CCGTTGACGAAACCGAGTAG 58.666 55.000 4.91 0.00 43.02 2.57
954 1243 1.335324 CCGTTGACGAAACCGAGTAGT 60.335 52.381 4.91 0.00 43.02 2.73
955 1244 2.095768 CCGTTGACGAAACCGAGTAGTA 60.096 50.000 4.91 0.00 43.02 1.82
956 1245 3.159026 CGTTGACGAAACCGAGTAGTAG 58.841 50.000 0.00 0.00 43.02 2.57
957 1246 3.364366 CGTTGACGAAACCGAGTAGTAGT 60.364 47.826 0.00 0.00 43.02 2.73
958 1247 4.143115 CGTTGACGAAACCGAGTAGTAGTA 60.143 45.833 0.00 0.00 43.02 1.82
968 1257 2.499197 GAGTAGTAGTACCCTACGCCC 58.501 57.143 12.28 5.33 46.76 6.13
1086 1384 3.948719 TGGGAGTTCCACGCCACC 61.949 66.667 0.00 0.00 40.05 4.61
1148 1450 3.288381 AGCCCCACTCCCTCCTCT 61.288 66.667 0.00 0.00 0.00 3.69
1150 1452 2.443016 CCCCACTCCCTCCTCTCG 60.443 72.222 0.00 0.00 0.00 4.04
1151 1453 3.151022 CCCACTCCCTCCTCTCGC 61.151 72.222 0.00 0.00 0.00 5.03
1154 1456 4.467107 ACTCCCTCCTCTCGCCCC 62.467 72.222 0.00 0.00 0.00 5.80
1200 1529 1.197910 GATAGCGCGTACTGTTGGTC 58.802 55.000 8.43 0.00 0.00 4.02
1234 1563 2.847441 GGGGTATTCCGAATCTGAACC 58.153 52.381 0.00 0.00 36.01 3.62
1235 1564 2.486727 GGGGTATTCCGAATCTGAACCC 60.487 54.545 16.94 16.94 36.01 4.11
1252 1581 2.955614 ACCCTGTCGTCTTGATTTACG 58.044 47.619 0.00 0.00 40.40 3.18
1262 1591 5.064452 TCGTCTTGATTTACGAGTCTAGGTC 59.936 44.000 0.00 0.00 42.74 3.85
1263 1592 5.064962 CGTCTTGATTTACGAGTCTAGGTCT 59.935 44.000 0.00 0.00 41.55 3.85
1264 1593 6.259638 GTCTTGATTTACGAGTCTAGGTCTG 58.740 44.000 0.00 0.00 0.00 3.51
1265 1594 5.357314 TCTTGATTTACGAGTCTAGGTCTGG 59.643 44.000 0.00 0.00 0.00 3.86
1266 1595 3.952323 TGATTTACGAGTCTAGGTCTGGG 59.048 47.826 0.00 0.00 0.00 4.45
1267 1596 2.431954 TTACGAGTCTAGGTCTGGGG 57.568 55.000 0.00 0.00 0.00 4.96
1268 1597 0.549950 TACGAGTCTAGGTCTGGGGG 59.450 60.000 0.00 0.00 0.00 5.40
1269 1598 1.306970 CGAGTCTAGGTCTGGGGGT 59.693 63.158 0.00 0.00 0.00 4.95
1270 1599 0.752376 CGAGTCTAGGTCTGGGGGTC 60.752 65.000 0.00 0.00 0.00 4.46
1271 1600 0.632294 GAGTCTAGGTCTGGGGGTCT 59.368 60.000 0.00 0.00 0.00 3.85
1272 1601 1.851653 GAGTCTAGGTCTGGGGGTCTA 59.148 57.143 0.00 0.00 0.00 2.59
1273 1602 1.854280 AGTCTAGGTCTGGGGGTCTAG 59.146 57.143 0.00 0.00 0.00 2.43
1274 1603 1.133419 GTCTAGGTCTGGGGGTCTAGG 60.133 61.905 0.00 0.00 32.41 3.02
1275 1604 0.935194 CTAGGTCTGGGGGTCTAGGT 59.065 60.000 0.00 0.00 0.00 3.08
1276 1605 0.932211 TAGGTCTGGGGGTCTAGGTC 59.068 60.000 0.00 0.00 0.00 3.85
1293 1622 1.473434 GGTCTGGGGATTCTTAGCGTG 60.473 57.143 0.00 0.00 0.00 5.34
1353 1683 0.314935 CCGTTTGCTGAAATGCCACT 59.685 50.000 0.00 0.00 0.00 4.00
1361 1691 2.494870 GCTGAAATGCCACTTGGATTCT 59.505 45.455 0.00 0.00 37.39 2.40
1385 1715 7.171630 TGGAAGAATTCTAGGTCTAGTTCAC 57.828 40.000 8.75 0.00 46.56 3.18
1386 1716 6.127703 TGGAAGAATTCTAGGTCTAGTTCACG 60.128 42.308 8.75 0.00 46.56 4.35
1387 1717 6.127675 GGAAGAATTCTAGGTCTAGTTCACGT 60.128 42.308 8.75 0.00 46.56 4.49
1388 1718 6.837471 AGAATTCTAGGTCTAGTTCACGTT 57.163 37.500 6.06 0.00 34.84 3.99
1389 1719 7.229581 AGAATTCTAGGTCTAGTTCACGTTT 57.770 36.000 6.06 0.00 34.84 3.60
1398 1730 4.508861 GTCTAGTTCACGTTTTGCCTGTTA 59.491 41.667 0.00 0.00 0.00 2.41
1423 1755 2.219325 CTCGCCCTCTGTCGAAGCTT 62.219 60.000 0.00 0.00 34.07 3.74
1424 1756 1.374758 CGCCCTCTGTCGAAGCTTT 60.375 57.895 0.00 0.00 0.00 3.51
1432 1764 4.268884 CCTCTGTCGAAGCTTTAATACTGC 59.731 45.833 0.00 0.00 0.00 4.40
1437 1769 4.630069 GTCGAAGCTTTAATACTGCCTTGA 59.370 41.667 0.00 0.00 0.00 3.02
1438 1770 5.121768 GTCGAAGCTTTAATACTGCCTTGAA 59.878 40.000 0.00 0.00 0.00 2.69
1439 1771 5.703592 TCGAAGCTTTAATACTGCCTTGAAA 59.296 36.000 0.00 0.00 0.00 2.69
1440 1772 6.374333 TCGAAGCTTTAATACTGCCTTGAAAT 59.626 34.615 0.00 0.00 0.00 2.17
1441 1773 6.470235 CGAAGCTTTAATACTGCCTTGAAATG 59.530 38.462 0.00 0.00 0.00 2.32
1450 1782 2.599216 CCTTGAAATGGCCATGGCT 58.401 52.632 34.70 16.75 41.60 4.75
1451 1783 0.177141 CCTTGAAATGGCCATGGCTG 59.823 55.000 34.70 14.53 41.60 4.85
1475 1807 5.008613 GTGTCTATCTTGCCTGTTGTTTTGA 59.991 40.000 0.00 0.00 0.00 2.69
1481 1813 3.096489 TGCCTGTTGTTTTGATTGAGC 57.904 42.857 0.00 0.00 0.00 4.26
1526 1858 0.320683 TCAGATGACACTGGTTGGCG 60.321 55.000 0.00 0.00 34.92 5.69
1537 1869 1.275421 TGGTTGGCGTCCATATGGGA 61.275 55.000 21.78 5.88 45.89 4.37
1547 1879 1.535204 CCATATGGGAAATGGGGCGC 61.535 60.000 14.52 0.00 40.27 6.53
1551 1883 1.898330 ATGGGAAATGGGGCGCAAAC 61.898 55.000 10.83 0.00 0.00 2.93
1583 1916 1.562672 AAACTAGCAGGGCCGATGGT 61.563 55.000 14.74 14.74 0.00 3.55
1584 1917 2.109799 CTAGCAGGGCCGATGGTG 59.890 66.667 18.57 7.42 0.00 4.17
1585 1918 3.466791 CTAGCAGGGCCGATGGTGG 62.467 68.421 18.57 13.19 0.00 4.61
1594 1927 4.175337 CGATGGTGGCCGATGGGT 62.175 66.667 0.00 0.00 34.97 4.51
1596 1929 1.761174 GATGGTGGCCGATGGGTAT 59.239 57.895 0.00 0.00 34.97 2.73
1599 1932 0.470766 TGGTGGCCGATGGGTATTAC 59.529 55.000 0.00 0.00 34.97 1.89
1620 1953 3.906846 ACTCCTATAGAATTCAGGCCCTG 59.093 47.826 3.69 3.69 0.00 4.45
1649 1982 5.006386 GTGAGATTGGATCCTGTTCAAAGT 58.994 41.667 14.23 0.00 0.00 2.66
1668 2001 6.149308 TCAAAGTATTACATGTGGAAGCAGTG 59.851 38.462 9.11 0.00 0.00 3.66
1669 2002 5.165961 AGTATTACATGTGGAAGCAGTGT 57.834 39.130 9.11 0.00 0.00 3.55
1670 2003 5.560724 AGTATTACATGTGGAAGCAGTGTT 58.439 37.500 9.11 0.00 0.00 3.32
1692 2025 6.951198 TGTTTATTGTTGGTGATAAGGGACAT 59.049 34.615 0.00 0.00 0.00 3.06
1693 2026 7.093988 TGTTTATTGTTGGTGATAAGGGACATG 60.094 37.037 0.00 0.00 0.00 3.21
1694 2027 4.380843 TTGTTGGTGATAAGGGACATGT 57.619 40.909 0.00 0.00 0.00 3.21
1695 2028 3.684908 TGTTGGTGATAAGGGACATGTG 58.315 45.455 1.15 0.00 0.00 3.21
1696 2029 2.418368 TGGTGATAAGGGACATGTGC 57.582 50.000 9.16 9.16 0.00 4.57
1697 2030 1.064758 TGGTGATAAGGGACATGTGCC 60.065 52.381 27.69 27.69 41.91 5.01
1698 2031 1.064758 GGTGATAAGGGACATGTGCCA 60.065 52.381 34.48 18.19 44.28 4.92
1699 2032 2.292267 GTGATAAGGGACATGTGCCAG 58.708 52.381 34.48 0.00 44.28 4.85
1700 2033 1.915489 TGATAAGGGACATGTGCCAGT 59.085 47.619 34.48 24.47 44.28 4.00
1701 2034 2.292267 GATAAGGGACATGTGCCAGTG 58.708 52.381 34.48 0.00 44.28 3.66
1702 2035 1.064003 TAAGGGACATGTGCCAGTGT 58.936 50.000 34.48 19.90 44.28 3.55
1703 2036 1.064003 AAGGGACATGTGCCAGTGTA 58.936 50.000 34.48 0.00 44.28 2.90
1704 2037 1.289160 AGGGACATGTGCCAGTGTAT 58.711 50.000 34.48 13.14 44.28 2.29
1705 2038 1.065199 AGGGACATGTGCCAGTGTATG 60.065 52.381 34.48 0.00 44.28 2.39
1706 2039 1.340017 GGGACATGTGCCAGTGTATGT 60.340 52.381 29.60 0.00 41.16 2.29
1707 2040 2.436417 GGACATGTGCCAGTGTATGTT 58.564 47.619 1.15 0.00 34.18 2.71
1708 2041 2.162208 GGACATGTGCCAGTGTATGTTG 59.838 50.000 1.15 0.00 34.18 3.33
1709 2042 2.813754 GACATGTGCCAGTGTATGTTGT 59.186 45.455 1.15 0.00 34.18 3.32
1710 2043 2.813754 ACATGTGCCAGTGTATGTTGTC 59.186 45.455 0.00 0.00 30.05 3.18
1711 2044 2.629336 TGTGCCAGTGTATGTTGTCA 57.371 45.000 0.00 0.00 0.00 3.58
1712 2045 2.493035 TGTGCCAGTGTATGTTGTCAG 58.507 47.619 0.00 0.00 0.00 3.51
1713 2046 2.158827 TGTGCCAGTGTATGTTGTCAGT 60.159 45.455 0.00 0.00 0.00 3.41
1714 2047 2.224079 GTGCCAGTGTATGTTGTCAGTG 59.776 50.000 0.00 0.00 35.52 3.66
1715 2048 2.158827 TGCCAGTGTATGTTGTCAGTGT 60.159 45.455 0.00 0.00 34.38 3.55
1716 2049 2.878406 GCCAGTGTATGTTGTCAGTGTT 59.122 45.455 0.00 0.00 34.38 3.32
1717 2050 3.315191 GCCAGTGTATGTTGTCAGTGTTT 59.685 43.478 0.00 0.00 34.38 2.83
1718 2051 4.513692 GCCAGTGTATGTTGTCAGTGTTTA 59.486 41.667 0.00 0.00 34.38 2.01
1719 2052 5.181245 GCCAGTGTATGTTGTCAGTGTTTAT 59.819 40.000 0.00 0.00 34.38 1.40
1720 2053 6.293955 GCCAGTGTATGTTGTCAGTGTTTATT 60.294 38.462 0.00 0.00 34.38 1.40
1721 2054 7.094975 GCCAGTGTATGTTGTCAGTGTTTATTA 60.095 37.037 0.00 0.00 34.38 0.98
1722 2055 8.227791 CCAGTGTATGTTGTCAGTGTTTATTAC 58.772 37.037 0.00 0.00 34.38 1.89
1723 2056 8.769891 CAGTGTATGTTGTCAGTGTTTATTACA 58.230 33.333 0.00 0.00 32.37 2.41
1724 2057 9.502091 AGTGTATGTTGTCAGTGTTTATTACAT 57.498 29.630 0.00 0.00 39.39 2.29
1725 2058 9.541724 GTGTATGTTGTCAGTGTTTATTACATG 57.458 33.333 0.00 0.00 39.39 3.21
1726 2059 9.278978 TGTATGTTGTCAGTGTTTATTACATGT 57.721 29.630 2.69 2.69 39.39 3.21
1727 2060 9.541724 GTATGTTGTCAGTGTTTATTACATGTG 57.458 33.333 9.11 0.00 39.39 3.21
1728 2061 6.964908 TGTTGTCAGTGTTTATTACATGTGG 58.035 36.000 9.11 0.00 39.39 4.17
1729 2062 6.768381 TGTTGTCAGTGTTTATTACATGTGGA 59.232 34.615 9.11 0.00 39.39 4.02
1730 2063 7.283354 TGTTGTCAGTGTTTATTACATGTGGAA 59.717 33.333 9.11 0.00 39.39 3.53
1731 2064 7.433708 TGTCAGTGTTTATTACATGTGGAAG 57.566 36.000 9.11 0.00 39.39 3.46
1732 2065 6.072728 TGTCAGTGTTTATTACATGTGGAAGC 60.073 38.462 9.11 2.61 39.39 3.86
1733 2066 6.000840 TCAGTGTTTATTACATGTGGAAGCA 58.999 36.000 9.11 5.23 39.39 3.91
1734 2067 6.149308 TCAGTGTTTATTACATGTGGAAGCAG 59.851 38.462 9.11 0.00 39.39 4.24
1735 2068 6.003950 AGTGTTTATTACATGTGGAAGCAGT 58.996 36.000 9.11 7.88 39.39 4.40
1736 2069 7.119116 CAGTGTTTATTACATGTGGAAGCAGTA 59.881 37.037 9.11 0.00 39.39 2.74
1737 2070 7.829211 AGTGTTTATTACATGTGGAAGCAGTAT 59.171 33.333 9.11 0.00 39.39 2.12
1738 2071 8.458843 GTGTTTATTACATGTGGAAGCAGTATT 58.541 33.333 9.11 0.00 39.39 1.89
1739 2072 9.019656 TGTTTATTACATGTGGAAGCAGTATTT 57.980 29.630 9.11 0.00 0.00 1.40
1742 2075 9.674068 TTATTACATGTGGAAGCAGTATTTACA 57.326 29.630 9.11 0.00 0.00 2.41
1743 2076 8.752005 ATTACATGTGGAAGCAGTATTTACAT 57.248 30.769 9.11 0.00 0.00 2.29
1744 2077 9.845740 ATTACATGTGGAAGCAGTATTTACATA 57.154 29.630 9.11 0.00 0.00 2.29
1745 2078 9.674068 TTACATGTGGAAGCAGTATTTACATAA 57.326 29.630 9.11 0.00 0.00 1.90
1746 2079 7.985476 ACATGTGGAAGCAGTATTTACATAAC 58.015 34.615 0.00 0.00 0.00 1.89
1747 2080 7.609918 ACATGTGGAAGCAGTATTTACATAACA 59.390 33.333 0.00 0.00 0.00 2.41
1756 2089 9.109393 AGCAGTATTTACATAACATGTACTTGG 57.891 33.333 12.86 0.00 44.79 3.61
1791 2128 7.669089 TGTGACATGTTATACCCAGAATAGA 57.331 36.000 0.00 0.00 0.00 1.98
1816 2153 4.711355 CCCAACCACACATTTTCATAGGAT 59.289 41.667 0.00 0.00 0.00 3.24
1829 2166 7.588866 TTTTCATAGGATCCAAGCCCTATAT 57.411 36.000 15.82 0.00 42.26 0.86
1859 2197 2.924421 TGTGCCAGTGTATGTTGTCAA 58.076 42.857 0.00 0.00 0.00 3.18
1870 2208 6.015504 GTGTATGTTGTCAATGTCGATGTTC 58.984 40.000 0.00 0.00 0.00 3.18
1886 2227 9.820229 TGTCGATGTTCTATAAATTTTCAACAC 57.180 29.630 0.00 0.00 0.00 3.32
1915 2256 4.931601 GTGTCATGAGTGTAGAAAGCATGA 59.068 41.667 0.00 0.00 41.96 3.07
1951 2292 0.928229 AGTTGCGAACACGTTGACTC 59.072 50.000 0.00 0.00 0.00 3.36
2011 2352 5.633927 AGTTTTTGTCACGTTGGACTTTAC 58.366 37.500 7.46 1.94 38.61 2.01
2033 2374 5.186198 ACTAGTTGTATGACAGGGAATTGC 58.814 41.667 0.00 0.00 0.00 3.56
2050 2402 5.391950 GGAATTGCGTCATGAGCTTTTAAGA 60.392 40.000 15.20 0.00 35.28 2.10
2211 2564 6.931840 AGAAATGTTAGGCTTCCGATATCTTC 59.068 38.462 0.00 0.00 0.00 2.87
2455 2808 6.013379 TGGTGGAAGCCATTTAAATACAAGA 58.987 36.000 0.00 0.00 35.28 3.02
2476 2829 2.288666 TGGTGCGCCTTCTAATTGATC 58.711 47.619 18.96 0.00 35.27 2.92
2521 2874 2.501723 GCACTTCTAGAATGGGACCAGA 59.498 50.000 5.44 0.00 0.00 3.86
2619 2972 1.002033 CTGAAGCAGTCAACTGTTGCC 60.002 52.381 15.52 4.39 45.45 4.52
2748 3101 1.838754 CAACAATGTGTGCGTTGCG 59.161 52.632 0.00 0.00 43.49 4.85
2799 3152 2.582052 CAGGTTGGTAAGACTTTGGCA 58.418 47.619 0.00 0.00 0.00 4.92
2805 3158 4.112634 TGGTAAGACTTTGGCAAAGGAT 57.887 40.909 35.57 24.94 42.82 3.24
2949 3302 1.235724 CCGTTGAAAGTTCTCACCCC 58.764 55.000 0.00 0.00 0.00 4.95
2991 3344 8.531146 ACTGTTTCTGAAATTGGAGAAGAAAAA 58.469 29.630 6.06 0.00 38.28 1.94
3286 3639 4.630069 CCCTGTATGTGAAAGAAACGTAGG 59.370 45.833 0.00 0.00 0.00 3.18
3316 3669 5.672421 ATGTCATTGTGATCTCTGTCTCA 57.328 39.130 0.00 0.00 0.00 3.27
3333 3686 4.832823 TGTCTCATGTTGTCTCCTGTTCTA 59.167 41.667 0.00 0.00 0.00 2.10
3378 3732 3.459232 TCATGAAGCTATCCAGTTCCG 57.541 47.619 0.00 0.00 0.00 4.30
3461 3815 9.978336 AGTATTACATTATCTACTACTCCCTCC 57.022 37.037 0.00 0.00 0.00 4.30
3464 3818 6.445451 ACATTATCTACTACTCCCTCCGTA 57.555 41.667 0.00 0.00 0.00 4.02
3466 3820 5.894298 TTATCTACTACTCCCTCCGTACA 57.106 43.478 0.00 0.00 0.00 2.90
3468 3822 4.574674 TCTACTACTCCCTCCGTACAAA 57.425 45.455 0.00 0.00 0.00 2.83
3488 3842 4.341366 AAAAAGCTTGTCCCTCAAATGG 57.659 40.909 0.00 0.00 35.48 3.16
3489 3843 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3490 3844 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3491 3845 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3492 3846 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3494 3848 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3495 3849 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3500 3854 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3502 3856 5.879223 CCCTCAAATGGATGTATCTAGCATC 59.121 44.000 1.37 1.37 41.30 3.91
3505 3859 7.119407 CCTCAAATGGATGTATCTAGCATCAAG 59.881 40.741 9.99 0.59 43.17 3.02
3506 3860 7.512130 TCAAATGGATGTATCTAGCATCAAGT 58.488 34.615 9.99 0.00 43.17 3.16
3507 3861 7.994911 TCAAATGGATGTATCTAGCATCAAGTT 59.005 33.333 9.99 3.16 43.17 2.66
3508 3862 9.276590 CAAATGGATGTATCTAGCATCAAGTTA 57.723 33.333 9.99 0.00 43.17 2.24
3510 3864 7.603180 TGGATGTATCTAGCATCAAGTTAGT 57.397 36.000 9.99 0.00 43.17 2.24
3511 3865 7.436933 TGGATGTATCTAGCATCAAGTTAGTG 58.563 38.462 9.99 0.00 43.17 2.74
3514 3868 7.582667 TGTATCTAGCATCAAGTTAGTGCTA 57.417 36.000 16.22 16.22 46.54 3.49
3522 3876 7.151308 AGCATCAAGTTAGTGCTAGATACATC 58.849 38.462 11.30 0.00 46.54 3.06
3523 3877 6.925718 GCATCAAGTTAGTGCTAGATACATCA 59.074 38.462 0.00 0.00 36.02 3.07
3524 3878 7.601886 GCATCAAGTTAGTGCTAGATACATCAT 59.398 37.037 0.00 0.00 36.02 2.45
3525 3879 9.486497 CATCAAGTTAGTGCTAGATACATCATT 57.514 33.333 0.00 0.00 0.00 2.57
3527 3881 9.317936 TCAAGTTAGTGCTAGATACATCATTTG 57.682 33.333 0.00 0.00 0.00 2.32
3528 3882 9.317936 CAAGTTAGTGCTAGATACATCATTTGA 57.682 33.333 0.00 0.00 0.00 2.69
3529 3883 9.539825 AAGTTAGTGCTAGATACATCATTTGAG 57.460 33.333 0.00 0.00 0.00 3.02
3530 3884 8.918116 AGTTAGTGCTAGATACATCATTTGAGA 58.082 33.333 0.00 0.00 0.00 3.27
3531 3885 9.190858 GTTAGTGCTAGATACATCATTTGAGAG 57.809 37.037 0.00 0.00 0.00 3.20
3532 3886 6.757237 AGTGCTAGATACATCATTTGAGAGG 58.243 40.000 0.00 0.00 0.00 3.69
3533 3887 5.407995 GTGCTAGATACATCATTTGAGAGGC 59.592 44.000 0.00 0.00 0.00 4.70
3534 3888 5.070847 TGCTAGATACATCATTTGAGAGGCA 59.929 40.000 0.00 0.00 0.00 4.75
3535 3889 5.994054 GCTAGATACATCATTTGAGAGGCAA 59.006 40.000 0.00 0.00 33.88 4.52
3545 3899 3.558931 TTGAGAGGCAAACTTGAGACA 57.441 42.857 0.00 0.00 32.46 3.41
3546 3900 3.558931 TGAGAGGCAAACTTGAGACAA 57.441 42.857 0.00 0.00 0.00 3.18
3547 3901 3.470709 TGAGAGGCAAACTTGAGACAAG 58.529 45.455 9.51 9.51 0.00 3.16
3548 3902 3.118261 TGAGAGGCAAACTTGAGACAAGT 60.118 43.478 10.73 10.73 0.00 3.16
3549 3903 3.879892 GAGAGGCAAACTTGAGACAAGTT 59.120 43.478 19.66 19.66 41.82 2.66
3551 3905 4.706962 AGAGGCAAACTTGAGACAAGTTTT 59.293 37.500 28.20 19.41 45.20 2.43
3552 3906 5.185828 AGAGGCAAACTTGAGACAAGTTTTT 59.814 36.000 28.20 20.26 45.20 1.94
3667 4026 8.281531 TCCCTGAACCAGAAAAACATATGATAT 58.718 33.333 10.38 0.00 32.44 1.63
3668 4027 8.571336 CCCTGAACCAGAAAAACATATGATATC 58.429 37.037 10.38 0.00 32.44 1.63
3737 4096 8.664798 TCCGTTCACAAATTATAAGATGTTCTG 58.335 33.333 3.79 0.00 0.00 3.02
3770 4129 8.651589 TTTCTGAATCGGATGTATATAGACCT 57.348 34.615 0.00 0.00 0.00 3.85
3779 4138 9.139734 TCGGATGTATATAGACCTGTTTTAGTT 57.860 33.333 0.00 0.00 0.00 2.24
3793 4152 5.328691 TGTTTTAGTTTGCTTGTTCACTCG 58.671 37.500 0.00 0.00 0.00 4.18
3802 4161 3.438781 TGCTTGTTCACTCGTTTCAGTTT 59.561 39.130 0.00 0.00 0.00 2.66
3885 4248 3.489355 AGAACTGTGATTTGTGGCATCA 58.511 40.909 0.00 0.00 0.00 3.07
4011 4374 6.725834 AGAATATCACAATGGTGGTTCCTTTT 59.274 34.615 0.00 0.00 45.32 2.27
4045 4410 0.397941 CTGCCTGAACCAGAACCTGA 59.602 55.000 0.00 0.00 32.44 3.86
4107 4472 6.349300 CCATTGCTAGTACAGTACAAGGAAT 58.651 40.000 13.37 3.45 0.00 3.01
4145 4511 4.334443 CGAAGCTACATCATTTGTTTCCG 58.666 43.478 0.00 0.00 39.87 4.30
4185 4551 3.679389 CATTCACAAGGCAAGGTAGTCT 58.321 45.455 0.00 0.00 0.00 3.24
4187 4553 1.272490 TCACAAGGCAAGGTAGTCTCG 59.728 52.381 0.00 0.00 0.00 4.04
4205 4597 9.302345 GTAGTCTCGATCTGATTTATTTGTGAA 57.698 33.333 0.00 0.00 0.00 3.18
4227 4619 7.873505 GTGAACATAACAAGGACTTAGTTCTCT 59.126 37.037 0.00 0.00 36.15 3.10
4528 4921 8.690680 AGATTTCTCGTGAAGACTTTACATAC 57.309 34.615 10.39 0.00 32.27 2.39
4595 4988 5.221880 TGCATGTTTTTATCAAGTGTGCTC 58.778 37.500 0.00 0.00 0.00 4.26
4684 5080 3.700538 TGCATTCTTTGATAAGGGTGCT 58.299 40.909 12.81 0.00 40.08 4.40
4687 5083 4.439289 GCATTCTTTGATAAGGGTGCTCAC 60.439 45.833 0.00 0.00 38.24 3.51
4704 5100 3.366883 GCTCACGTTCTCTGAATCACTCT 60.367 47.826 0.00 0.00 0.00 3.24
4705 5101 4.804108 CTCACGTTCTCTGAATCACTCTT 58.196 43.478 0.00 0.00 0.00 2.85
4706 5102 5.201713 TCACGTTCTCTGAATCACTCTTT 57.798 39.130 0.00 0.00 0.00 2.52
4707 5103 4.984785 TCACGTTCTCTGAATCACTCTTTG 59.015 41.667 0.00 0.00 0.00 2.77
4708 5104 4.747108 CACGTTCTCTGAATCACTCTTTGT 59.253 41.667 0.00 0.00 0.00 2.83
4709 5105 5.235186 CACGTTCTCTGAATCACTCTTTGTT 59.765 40.000 0.00 0.00 0.00 2.83
4710 5106 6.420903 CACGTTCTCTGAATCACTCTTTGTTA 59.579 38.462 0.00 0.00 0.00 2.41
4711 5107 6.984474 ACGTTCTCTGAATCACTCTTTGTTAA 59.016 34.615 0.00 0.00 0.00 2.01
4712 5108 7.657761 ACGTTCTCTGAATCACTCTTTGTTAAT 59.342 33.333 0.00 0.00 0.00 1.40
4713 5109 7.954248 CGTTCTCTGAATCACTCTTTGTTAATG 59.046 37.037 0.00 0.00 0.00 1.90
4714 5110 8.778358 GTTCTCTGAATCACTCTTTGTTAATGT 58.222 33.333 0.00 0.00 0.00 2.71
4715 5111 8.539770 TCTCTGAATCACTCTTTGTTAATGTC 57.460 34.615 0.00 0.00 0.00 3.06
4716 5112 8.150296 TCTCTGAATCACTCTTTGTTAATGTCA 58.850 33.333 0.00 0.00 0.00 3.58
4721 5117 9.760660 GAATCACTCTTTGTTAATGTCACATAC 57.239 33.333 0.00 0.00 0.00 2.39
4738 5134 4.507021 CACATACATCTGCTTCAGCTACTG 59.493 45.833 0.00 0.00 42.66 2.74
4752 5148 3.499918 CAGCTACTGAAGTGTCCAAAAGG 59.500 47.826 0.00 0.00 32.44 3.11
4756 5152 3.279434 ACTGAAGTGTCCAAAAGGTCAC 58.721 45.455 4.13 4.13 0.00 3.67
4763 5159 1.133407 GTCCAAAAGGTCACGCACAAA 59.867 47.619 0.00 0.00 0.00 2.83
4764 5160 1.133407 TCCAAAAGGTCACGCACAAAC 59.867 47.619 0.00 0.00 0.00 2.93
4765 5161 1.187715 CAAAAGGTCACGCACAAACG 58.812 50.000 0.00 0.00 39.50 3.60
4773 5169 2.462565 GTCACGCACAAACGAAAATGAC 59.537 45.455 0.00 0.00 36.70 3.06
4775 5171 2.213131 CACGCACAAACGAAAATGACAC 59.787 45.455 0.00 0.00 36.70 3.67
4777 5173 1.187055 GCACAAACGAAAATGACACGC 59.813 47.619 0.00 0.00 0.00 5.34
4944 5351 7.373493 CCTTTTCTGTTTGAGCTAACATGAAT 58.627 34.615 0.00 0.00 37.39 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
687 969 0.613012 AAAGAGTGAGGGCATTGGGC 60.613 55.000 0.00 0.00 43.74 5.36
688 970 1.928868 AAAAGAGTGAGGGCATTGGG 58.071 50.000 0.00 0.00 0.00 4.12
689 971 2.892852 TGAAAAAGAGTGAGGGCATTGG 59.107 45.455 0.00 0.00 0.00 3.16
690 972 4.553323 CTTGAAAAAGAGTGAGGGCATTG 58.447 43.478 0.00 0.00 0.00 2.82
691 973 3.575687 CCTTGAAAAAGAGTGAGGGCATT 59.424 43.478 0.00 0.00 0.00 3.56
692 974 3.160269 CCTTGAAAAAGAGTGAGGGCAT 58.840 45.455 0.00 0.00 0.00 4.40
693 975 2.174639 TCCTTGAAAAAGAGTGAGGGCA 59.825 45.455 0.00 0.00 0.00 5.36
710 992 1.522569 GTGGTAGCGAGGCATCCTT 59.477 57.895 0.00 0.00 31.76 3.36
784 1066 9.716556 AGATCTCCTTGTACTCTTATTTTAGGA 57.283 33.333 0.00 0.00 0.00 2.94
812 1094 2.126580 AGCCGAAGCGTGTCGTAC 60.127 61.111 8.68 1.86 46.67 3.67
835 1117 2.717639 ACTGCAAACCTCTTGTCTGT 57.282 45.000 0.00 0.00 0.00 3.41
836 1118 4.380531 TCTTACTGCAAACCTCTTGTCTG 58.619 43.478 0.00 0.00 0.00 3.51
839 1121 5.827797 TCATTTCTTACTGCAAACCTCTTGT 59.172 36.000 0.00 0.00 0.00 3.16
840 1122 6.145535 GTCATTTCTTACTGCAAACCTCTTG 58.854 40.000 0.00 0.00 0.00 3.02
953 1242 0.184692 AGGAGGGCGTAGGGTACTAC 59.815 60.000 0.00 0.00 44.91 2.73
954 1243 0.929244 AAGGAGGGCGTAGGGTACTA 59.071 55.000 0.00 0.00 0.00 1.82
955 1244 0.396835 GAAGGAGGGCGTAGGGTACT 60.397 60.000 0.00 0.00 0.00 2.73
956 1245 1.398174 GGAAGGAGGGCGTAGGGTAC 61.398 65.000 0.00 0.00 0.00 3.34
957 1246 1.075748 GGAAGGAGGGCGTAGGGTA 60.076 63.158 0.00 0.00 0.00 3.69
958 1247 2.365237 GGAAGGAGGGCGTAGGGT 60.365 66.667 0.00 0.00 0.00 4.34
1031 1323 2.190578 CTCCGTTGCTCCCCATCC 59.809 66.667 0.00 0.00 0.00 3.51
1086 1384 4.821589 GAGAGGTTGCGAGGCCCG 62.822 72.222 0.00 3.77 42.21 6.13
1131 1429 3.288381 AGAGGAGGGAGTGGGGCT 61.288 66.667 0.00 0.00 0.00 5.19
1132 1430 2.766229 GAGAGGAGGGAGTGGGGC 60.766 72.222 0.00 0.00 0.00 5.80
1234 1563 3.834610 ACTCGTAAATCAAGACGACAGG 58.165 45.455 0.00 0.00 42.80 4.00
1235 1564 4.724303 AGACTCGTAAATCAAGACGACAG 58.276 43.478 0.00 0.00 42.80 3.51
1252 1581 0.632294 AGACCCCCAGACCTAGACTC 59.368 60.000 0.00 0.00 0.00 3.36
1262 1591 1.383248 CCCAGACCTAGACCCCCAG 60.383 68.421 0.00 0.00 0.00 4.45
1263 1592 2.784984 CCCAGACCTAGACCCCCA 59.215 66.667 0.00 0.00 0.00 4.96
1264 1593 1.974551 ATCCCCAGACCTAGACCCCC 61.975 65.000 0.00 0.00 0.00 5.40
1265 1594 0.029989 AATCCCCAGACCTAGACCCC 60.030 60.000 0.00 0.00 0.00 4.95
1266 1595 1.062044 AGAATCCCCAGACCTAGACCC 60.062 57.143 0.00 0.00 0.00 4.46
1267 1596 2.480642 AGAATCCCCAGACCTAGACC 57.519 55.000 0.00 0.00 0.00 3.85
1268 1597 3.322541 GCTAAGAATCCCCAGACCTAGAC 59.677 52.174 0.00 0.00 0.00 2.59
1269 1598 3.577919 GCTAAGAATCCCCAGACCTAGA 58.422 50.000 0.00 0.00 0.00 2.43
1270 1599 2.297597 CGCTAAGAATCCCCAGACCTAG 59.702 54.545 0.00 0.00 0.00 3.02
1271 1600 2.317040 CGCTAAGAATCCCCAGACCTA 58.683 52.381 0.00 0.00 0.00 3.08
1272 1601 1.123928 CGCTAAGAATCCCCAGACCT 58.876 55.000 0.00 0.00 0.00 3.85
1273 1602 0.831307 ACGCTAAGAATCCCCAGACC 59.169 55.000 0.00 0.00 0.00 3.85
1274 1603 1.473434 CCACGCTAAGAATCCCCAGAC 60.473 57.143 0.00 0.00 0.00 3.51
1275 1604 0.830648 CCACGCTAAGAATCCCCAGA 59.169 55.000 0.00 0.00 0.00 3.86
1276 1605 0.541863 ACCACGCTAAGAATCCCCAG 59.458 55.000 0.00 0.00 0.00 4.45
1293 1622 2.433318 GGCGTGCTCAGACAGACC 60.433 66.667 0.00 0.00 0.00 3.85
1353 1683 6.445139 AGACCTAGAATTCTTCCAGAATCCAA 59.555 38.462 14.36 0.00 43.67 3.53
1361 1691 6.127703 CGTGAACTAGACCTAGAATTCTTCCA 60.128 42.308 14.36 0.00 36.97 3.53
1380 1710 3.614588 GAGTAACAGGCAAAACGTGAAC 58.385 45.455 0.00 0.00 37.59 3.18
1381 1711 2.285756 CGAGTAACAGGCAAAACGTGAA 59.714 45.455 0.00 0.00 37.59 3.18
1382 1712 1.862201 CGAGTAACAGGCAAAACGTGA 59.138 47.619 0.00 0.00 37.59 4.35
1384 1714 0.584876 GCGAGTAACAGGCAAAACGT 59.415 50.000 0.00 0.00 0.00 3.99
1385 1715 0.110373 GGCGAGTAACAGGCAAAACG 60.110 55.000 0.00 0.00 0.00 3.60
1386 1716 1.197036 GAGGCGAGTAACAGGCAAAAC 59.803 52.381 0.00 0.00 35.18 2.43
1387 1717 1.519408 GAGGCGAGTAACAGGCAAAA 58.481 50.000 0.00 0.00 35.18 2.44
1388 1718 0.669318 CGAGGCGAGTAACAGGCAAA 60.669 55.000 0.00 0.00 35.18 3.68
1389 1719 1.080093 CGAGGCGAGTAACAGGCAA 60.080 57.895 0.00 0.00 35.18 4.52
1432 1764 0.177141 CAGCCATGGCCATTTCAAGG 59.823 55.000 33.14 15.30 43.17 3.61
1437 1769 0.251922 AGACACAGCCATGGCCATTT 60.252 50.000 33.14 14.69 43.17 2.32
1438 1770 0.625316 TAGACACAGCCATGGCCATT 59.375 50.000 33.14 15.23 43.17 3.16
1439 1771 0.848735 ATAGACACAGCCATGGCCAT 59.151 50.000 33.14 18.94 43.17 4.40
1440 1772 0.181114 GATAGACACAGCCATGGCCA 59.819 55.000 33.14 8.56 43.17 5.36
1441 1773 0.471617 AGATAGACACAGCCATGGCC 59.528 55.000 33.14 17.30 43.17 5.36
1443 1775 1.945394 GCAAGATAGACACAGCCATGG 59.055 52.381 7.63 7.63 0.00 3.66
1445 1777 1.842562 AGGCAAGATAGACACAGCCAT 59.157 47.619 0.00 0.00 44.34 4.40
1446 1778 1.065926 CAGGCAAGATAGACACAGCCA 60.066 52.381 0.00 0.00 44.34 4.75
1447 1779 1.065854 ACAGGCAAGATAGACACAGCC 60.066 52.381 0.00 0.00 42.31 4.85
1448 1780 2.393271 ACAGGCAAGATAGACACAGC 57.607 50.000 0.00 0.00 0.00 4.40
1449 1781 3.668447 ACAACAGGCAAGATAGACACAG 58.332 45.455 0.00 0.00 0.00 3.66
1450 1782 3.769739 ACAACAGGCAAGATAGACACA 57.230 42.857 0.00 0.00 0.00 3.72
1451 1783 5.008613 TCAAAACAACAGGCAAGATAGACAC 59.991 40.000 0.00 0.00 0.00 3.67
1475 1807 1.980772 GCAACCCAGCTGGCTCAAT 60.981 57.895 28.39 7.68 37.83 2.57
1481 1813 1.368579 CCTTTTGCAACCCAGCTGG 59.631 57.895 26.87 26.87 41.37 4.85
1501 1833 4.279169 CCAACCAGTGTCATCTGAAACAAT 59.721 41.667 3.46 0.00 37.61 2.71
1510 1842 1.298859 GGACGCCAACCAGTGTCATC 61.299 60.000 7.45 0.00 46.77 2.92
1526 1858 1.632589 GCCCCATTTCCCATATGGAC 58.367 55.000 24.00 0.00 45.11 4.02
1537 1869 0.467804 AAACTGTTTGCGCCCCATTT 59.532 45.000 4.18 0.00 0.00 2.32
1547 1879 6.364706 TGCTAGTTTGTTGTGAAAACTGTTTG 59.635 34.615 6.53 2.06 45.18 2.93
1551 1883 5.036737 CCTGCTAGTTTGTTGTGAAAACTG 58.963 41.667 10.90 3.92 45.18 3.16
1583 1916 1.053424 GGAGTAATACCCATCGGCCA 58.947 55.000 2.24 0.00 0.00 5.36
1584 1917 1.349067 AGGAGTAATACCCATCGGCC 58.651 55.000 0.00 0.00 0.00 6.13
1585 1918 5.198965 TCTATAGGAGTAATACCCATCGGC 58.801 45.833 0.00 0.00 0.00 5.54
1586 1919 7.899648 ATTCTATAGGAGTAATACCCATCGG 57.100 40.000 0.00 0.00 0.00 4.18
1587 1920 8.967918 TGAATTCTATAGGAGTAATACCCATCG 58.032 37.037 7.05 0.00 0.00 3.84
1589 1922 9.273137 CCTGAATTCTATAGGAGTAATACCCAT 57.727 37.037 7.05 0.00 33.33 4.00
1590 1923 7.180408 GCCTGAATTCTATAGGAGTAATACCCA 59.820 40.741 13.21 0.00 33.33 4.51
1594 1927 7.400339 CAGGGCCTGAATTCTATAGGAGTAATA 59.600 40.741 29.96 0.00 32.44 0.98
1596 1929 5.544176 CAGGGCCTGAATTCTATAGGAGTAA 59.456 44.000 29.96 0.00 32.44 2.24
1599 1932 3.906846 ACAGGGCCTGAATTCTATAGGAG 59.093 47.826 38.99 8.43 35.18 3.69
1620 1953 3.055530 ACAGGATCCAATCTCACACTCAC 60.056 47.826 15.82 0.00 0.00 3.51
1649 1982 8.458052 CAATAAACACTGCTTCCACATGTAATA 58.542 33.333 0.00 0.00 0.00 0.98
1668 2001 6.827586 TGTCCCTTATCACCAACAATAAAC 57.172 37.500 0.00 0.00 0.00 2.01
1669 2002 6.951198 ACATGTCCCTTATCACCAACAATAAA 59.049 34.615 0.00 0.00 0.00 1.40
1670 2003 6.376864 CACATGTCCCTTATCACCAACAATAA 59.623 38.462 0.00 0.00 0.00 1.40
1692 2025 2.158827 ACTGACAACATACACTGGCACA 60.159 45.455 0.00 0.00 0.00 4.57
1693 2026 2.224079 CACTGACAACATACACTGGCAC 59.776 50.000 0.00 0.00 0.00 5.01
1694 2027 2.158827 ACACTGACAACATACACTGGCA 60.159 45.455 0.00 0.00 0.00 4.92
1695 2028 2.494059 ACACTGACAACATACACTGGC 58.506 47.619 0.00 0.00 0.00 4.85
1696 2029 6.801539 ATAAACACTGACAACATACACTGG 57.198 37.500 0.00 0.00 0.00 4.00
1697 2030 8.769891 TGTAATAAACACTGACAACATACACTG 58.230 33.333 0.00 0.00 31.43 3.66
1698 2031 8.896320 TGTAATAAACACTGACAACATACACT 57.104 30.769 0.00 0.00 31.43 3.55
1699 2032 9.541724 CATGTAATAAACACTGACAACATACAC 57.458 33.333 0.00 0.00 42.09 2.90
1700 2033 9.278978 ACATGTAATAAACACTGACAACATACA 57.721 29.630 0.00 0.00 42.09 2.29
1701 2034 9.541724 CACATGTAATAAACACTGACAACATAC 57.458 33.333 0.00 0.00 42.09 2.39
1702 2035 8.726068 CCACATGTAATAAACACTGACAACATA 58.274 33.333 0.00 0.00 42.09 2.29
1703 2036 7.446931 TCCACATGTAATAAACACTGACAACAT 59.553 33.333 0.00 0.00 42.09 2.71
1704 2037 6.768381 TCCACATGTAATAAACACTGACAACA 59.232 34.615 0.00 0.00 42.09 3.33
1705 2038 7.197071 TCCACATGTAATAAACACTGACAAC 57.803 36.000 0.00 0.00 42.09 3.32
1706 2039 7.521423 GCTTCCACATGTAATAAACACTGACAA 60.521 37.037 0.00 0.00 42.09 3.18
1707 2040 6.072728 GCTTCCACATGTAATAAACACTGACA 60.073 38.462 0.00 0.00 42.09 3.58
1708 2041 6.072728 TGCTTCCACATGTAATAAACACTGAC 60.073 38.462 0.00 0.00 42.09 3.51
1709 2042 6.000840 TGCTTCCACATGTAATAAACACTGA 58.999 36.000 0.00 0.00 42.09 3.41
1710 2043 6.072508 ACTGCTTCCACATGTAATAAACACTG 60.073 38.462 0.00 0.00 42.09 3.66
1711 2044 6.003950 ACTGCTTCCACATGTAATAAACACT 58.996 36.000 0.00 0.00 42.09 3.55
1712 2045 6.254281 ACTGCTTCCACATGTAATAAACAC 57.746 37.500 0.00 0.00 42.09 3.32
1713 2046 8.574251 AATACTGCTTCCACATGTAATAAACA 57.426 30.769 0.00 0.00 43.86 2.83
1716 2049 9.674068 TGTAAATACTGCTTCCACATGTAATAA 57.326 29.630 0.00 0.00 0.00 1.40
1717 2050 9.845740 ATGTAAATACTGCTTCCACATGTAATA 57.154 29.630 0.00 0.00 0.00 0.98
1718 2051 8.752005 ATGTAAATACTGCTTCCACATGTAAT 57.248 30.769 0.00 0.00 0.00 1.89
1719 2052 9.674068 TTATGTAAATACTGCTTCCACATGTAA 57.326 29.630 0.00 0.00 0.00 2.41
1720 2053 9.104965 GTTATGTAAATACTGCTTCCACATGTA 57.895 33.333 0.00 0.00 0.00 2.29
1721 2054 7.609918 TGTTATGTAAATACTGCTTCCACATGT 59.390 33.333 0.00 0.00 0.00 3.21
1722 2055 7.984391 TGTTATGTAAATACTGCTTCCACATG 58.016 34.615 0.00 0.00 0.00 3.21
1723 2056 8.623903 CATGTTATGTAAATACTGCTTCCACAT 58.376 33.333 0.00 0.00 0.00 3.21
1724 2057 7.609918 ACATGTTATGTAAATACTGCTTCCACA 59.390 33.333 0.00 0.00 42.78 4.17
1725 2058 7.985476 ACATGTTATGTAAATACTGCTTCCAC 58.015 34.615 0.00 0.00 42.78 4.02
1726 2059 9.104965 GTACATGTTATGTAAATACTGCTTCCA 57.895 33.333 2.30 0.00 46.36 3.53
1727 2060 9.326413 AGTACATGTTATGTAAATACTGCTTCC 57.674 33.333 2.30 0.00 46.36 3.46
1730 2063 9.109393 CCAAGTACATGTTATGTAAATACTGCT 57.891 33.333 2.30 0.00 46.36 4.24
1731 2064 8.889717 ACCAAGTACATGTTATGTAAATACTGC 58.110 33.333 2.30 0.00 46.36 4.40
1740 2073 9.733556 TCTATTTTGACCAAGTACATGTTATGT 57.266 29.630 2.30 0.00 46.92 2.29
1743 2076 9.733556 ACATCTATTTTGACCAAGTACATGTTA 57.266 29.630 2.30 0.00 0.00 2.41
1744 2077 8.514594 CACATCTATTTTGACCAAGTACATGTT 58.485 33.333 2.30 0.00 0.00 2.71
1745 2078 7.882791 TCACATCTATTTTGACCAAGTACATGT 59.117 33.333 2.69 2.69 0.00 3.21
1746 2079 8.177663 GTCACATCTATTTTGACCAAGTACATG 58.822 37.037 0.00 0.00 34.72 3.21
1747 2080 7.882791 TGTCACATCTATTTTGACCAAGTACAT 59.117 33.333 0.00 0.00 39.16 2.29
1782 2115 1.281867 TGTGGTTGGGCTCTATTCTGG 59.718 52.381 0.00 0.00 0.00 3.86
1791 2128 1.786937 TGAAAATGTGTGGTTGGGCT 58.213 45.000 0.00 0.00 0.00 5.19
1816 2153 7.068593 CACAAAAGAAATCATATAGGGCTTGGA 59.931 37.037 0.00 0.00 0.00 3.53
1829 2166 5.301551 ACATACACTGGCACAAAAGAAATCA 59.698 36.000 0.00 0.00 38.70 2.57
1886 2227 6.091441 GCTTTCTACACTCATGACACTTTAGG 59.909 42.308 0.00 0.00 0.00 2.69
1889 2230 5.368145 TGCTTTCTACACTCATGACACTTT 58.632 37.500 0.00 0.00 0.00 2.66
1915 2256 3.550842 GCAACTTTGACCAGCGAGAAAAT 60.551 43.478 0.00 0.00 0.00 1.82
1951 2292 6.879276 ATGCATCAATACTGATTCTCCTTG 57.121 37.500 0.00 0.00 40.49 3.61
1996 2337 5.266733 ACAACTAGTAAAGTCCAACGTGA 57.733 39.130 0.00 0.00 37.50 4.35
2011 2352 4.271049 CGCAATTCCCTGTCATACAACTAG 59.729 45.833 0.00 0.00 0.00 2.57
2033 2374 5.869888 ACTAAGGTCTTAAAAGCTCATGACG 59.130 40.000 0.00 0.00 0.00 4.35
2211 2564 4.520492 AGTGACCAAAAATACAAGCAGAGG 59.480 41.667 0.00 0.00 0.00 3.69
2455 2808 2.418368 TCAATTAGAAGGCGCACCAT 57.582 45.000 10.83 0.00 39.06 3.55
2476 2829 4.662468 CATATATGGATCCGTCTCTGGG 57.338 50.000 10.55 0.00 0.00 4.45
2521 2874 2.502947 TCCAGTCTGATAGTGCAGCAAT 59.497 45.455 0.00 0.00 35.86 3.56
2619 2972 2.465813 AGGTCATCCTCCAAGTCTCTG 58.534 52.381 0.00 0.00 40.58 3.35
2720 3073 1.336148 ACACATTGTTGCTTCCATGCG 60.336 47.619 0.00 0.00 35.36 4.73
2799 3152 5.665459 CATTCTACGAAGACTCCATCCTTT 58.335 41.667 0.00 0.00 0.00 3.11
2805 3158 2.176045 TGGCATTCTACGAAGACTCCA 58.824 47.619 0.00 0.00 0.00 3.86
2925 3278 3.243401 GGTGAGAACTTTCAACGGCATTT 60.243 43.478 0.00 0.00 0.00 2.32
2949 3302 0.321653 CAGTTTCCCCCTTCTGTCCG 60.322 60.000 0.00 0.00 0.00 4.79
2991 3344 3.784178 TCTCTTCACCTCCTTGATCAGT 58.216 45.455 0.00 0.00 0.00 3.41
3138 3491 1.669795 GGCCCTTTCGCAATCACAAAG 60.670 52.381 0.00 0.00 0.00 2.77
3286 3639 5.416952 AGAGATCACAATGACATTGGTTTCC 59.583 40.000 27.46 14.48 44.42 3.13
3316 3669 7.179338 ACTTGACTATAGAACAGGAGACAACAT 59.821 37.037 6.78 0.00 0.00 2.71
3378 3732 4.607955 GTCAACTGACTAAAAGGTTTGCC 58.392 43.478 2.51 0.00 41.65 4.52
3468 3822 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3471 3825 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3472 3826 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3473 3827 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3474 3828 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3475 3829 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3477 3831 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3478 3832 5.233083 TGCTAGATACATCCATTTGAGGG 57.767 43.478 0.00 0.00 0.00 4.30
3480 3834 7.660617 ACTTGATGCTAGATACATCCATTTGAG 59.339 37.037 0.00 0.00 42.68 3.02
3481 3835 7.512130 ACTTGATGCTAGATACATCCATTTGA 58.488 34.615 0.00 0.00 42.68 2.69
3482 3836 7.741027 ACTTGATGCTAGATACATCCATTTG 57.259 36.000 0.00 0.00 42.68 2.32
3483 3837 9.499479 CTAACTTGATGCTAGATACATCCATTT 57.501 33.333 0.00 0.00 42.68 2.32
3484 3838 8.654997 ACTAACTTGATGCTAGATACATCCATT 58.345 33.333 0.00 0.00 42.68 3.16
3485 3839 8.093307 CACTAACTTGATGCTAGATACATCCAT 58.907 37.037 0.00 0.00 42.68 3.41
3486 3840 7.436933 CACTAACTTGATGCTAGATACATCCA 58.563 38.462 0.00 0.00 42.68 3.41
3487 3841 6.367422 GCACTAACTTGATGCTAGATACATCC 59.633 42.308 0.00 0.00 42.68 3.51
3488 3842 7.344910 GCACTAACTTGATGCTAGATACATC 57.655 40.000 0.00 0.00 43.46 3.06
3502 3856 9.317936 TCAAATGATGTATCTAGCACTAACTTG 57.682 33.333 0.00 0.00 0.00 3.16
3505 3859 9.190858 CTCTCAAATGATGTATCTAGCACTAAC 57.809 37.037 0.00 0.00 0.00 2.34
3506 3860 8.363390 CCTCTCAAATGATGTATCTAGCACTAA 58.637 37.037 0.00 0.00 0.00 2.24
3507 3861 7.524532 GCCTCTCAAATGATGTATCTAGCACTA 60.525 40.741 0.00 0.00 0.00 2.74
3508 3862 6.740960 GCCTCTCAAATGATGTATCTAGCACT 60.741 42.308 0.00 0.00 0.00 4.40
3510 3864 5.070847 TGCCTCTCAAATGATGTATCTAGCA 59.929 40.000 0.00 0.00 0.00 3.49
3511 3865 5.545588 TGCCTCTCAAATGATGTATCTAGC 58.454 41.667 0.00 0.00 0.00 3.42
3514 3868 6.421485 AGTTTGCCTCTCAAATGATGTATCT 58.579 36.000 0.00 0.00 45.43 1.98
3515 3869 6.690194 AGTTTGCCTCTCAAATGATGTATC 57.310 37.500 0.00 0.00 45.43 2.24
3516 3870 6.660521 TCAAGTTTGCCTCTCAAATGATGTAT 59.339 34.615 0.00 0.00 45.43 2.29
3517 3871 6.003326 TCAAGTTTGCCTCTCAAATGATGTA 58.997 36.000 0.00 0.00 45.43 2.29
3518 3872 4.828939 TCAAGTTTGCCTCTCAAATGATGT 59.171 37.500 0.00 0.00 45.43 3.06
3519 3873 5.182570 TCTCAAGTTTGCCTCTCAAATGATG 59.817 40.000 0.00 0.00 45.43 3.07
3522 3876 4.276678 TGTCTCAAGTTTGCCTCTCAAATG 59.723 41.667 0.00 0.00 45.43 2.32
3523 3877 4.464008 TGTCTCAAGTTTGCCTCTCAAAT 58.536 39.130 0.00 0.00 45.43 2.32
3524 3878 3.884895 TGTCTCAAGTTTGCCTCTCAAA 58.115 40.909 0.00 0.00 42.01 2.69
3525 3879 3.558931 TGTCTCAAGTTTGCCTCTCAA 57.441 42.857 0.00 0.00 0.00 3.02
3526 3880 3.118261 ACTTGTCTCAAGTTTGCCTCTCA 60.118 43.478 9.00 0.00 0.00 3.27
3527 3881 3.471680 ACTTGTCTCAAGTTTGCCTCTC 58.528 45.455 9.00 0.00 0.00 3.20
3528 3882 3.567478 ACTTGTCTCAAGTTTGCCTCT 57.433 42.857 9.00 0.00 0.00 3.69
3529 3883 4.639135 AAACTTGTCTCAAGTTTGCCTC 57.361 40.909 28.03 0.00 45.58 4.70
3530 3884 5.405935 AAAAACTTGTCTCAAGTTTGCCT 57.594 34.783 28.77 17.43 46.33 4.75
3549 3903 2.289010 GGTACTCCTTCCGTCCGAAAAA 60.289 50.000 0.00 0.00 0.00 1.94
3550 3904 1.273327 GGTACTCCTTCCGTCCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
3551 3905 0.890683 GGTACTCCTTCCGTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
3552 3906 0.038744 AGGTACTCCTTCCGTCCGAA 59.961 55.000 0.00 0.00 42.12 4.30
3553 3907 1.687612 AGGTACTCCTTCCGTCCGA 59.312 57.895 0.00 0.00 42.12 4.55
3554 3908 4.333417 AGGTACTCCTTCCGTCCG 57.667 61.111 0.00 0.00 42.12 4.79
3562 3916 6.023603 TGATCCTTTAGTTGAAGGTACTCCT 58.976 40.000 3.80 0.00 45.24 3.69
3578 3932 2.567615 ACAGTAGAACGCCTGATCCTTT 59.432 45.455 0.00 0.00 32.93 3.11
3668 4027 8.778358 GCTTCCTTGTATTATGGTTCTGAATAG 58.222 37.037 0.00 0.00 0.00 1.73
3770 4129 5.106475 ACGAGTGAACAAGCAAACTAAAACA 60.106 36.000 0.00 0.00 0.00 2.83
3779 4138 3.006940 ACTGAAACGAGTGAACAAGCAA 58.993 40.909 0.00 0.00 0.00 3.91
3793 4152 7.928908 TTCAATATGAACTGCAAACTGAAAC 57.071 32.000 0.00 0.00 30.26 2.78
3802 4161 8.623903 GTTCAGGATATTTCAATATGAACTGCA 58.376 33.333 12.95 0.00 35.89 4.41
3885 4248 4.020307 GTGTTGAAATGTGATTGGGGGATT 60.020 41.667 0.00 0.00 0.00 3.01
3921 4284 2.160219 ACGCACTTGTACATCTGCATTG 59.840 45.455 19.78 9.99 0.00 2.82
3976 4339 8.950210 CACCATTGTGATATTCTGAGTAACTTT 58.050 33.333 0.00 0.00 45.76 2.66
4143 4509 5.309323 TGCTCAAATAACCTTGATTTCGG 57.691 39.130 0.00 0.00 34.86 4.30
4145 4511 7.814107 TGTGAATGCTCAAATAACCTTGATTTC 59.186 33.333 0.00 0.00 34.86 2.17
4205 4597 8.211629 ACAAAGAGAACTAAGTCCTTGTTATGT 58.788 33.333 0.00 0.00 0.00 2.29
4511 4903 8.932791 AGTTTTATGGTATGTAAAGTCTTCACG 58.067 33.333 0.00 0.00 0.00 4.35
4551 4944 6.691508 TGCATGATGGTAGTGTCATATACTC 58.308 40.000 0.00 0.00 33.52 2.59
4552 4945 6.670695 TGCATGATGGTAGTGTCATATACT 57.329 37.500 0.00 0.00 33.52 2.12
4595 4988 4.533919 ACAAAGACTGATCCAGAGAGTG 57.466 45.455 0.45 0.00 35.18 3.51
4676 5072 0.034059 CAGAGAACGTGAGCACCCTT 59.966 55.000 0.00 0.00 0.00 3.95
4684 5080 4.855715 AAGAGTGATTCAGAGAACGTGA 57.144 40.909 0.00 0.00 0.00 4.35
4687 5083 5.914085 AACAAAGAGTGATTCAGAGAACG 57.086 39.130 0.00 0.00 0.00 3.95
4707 5103 7.937880 GCTGAAGCAGATGTATGTGACATTAAC 60.938 40.741 2.29 0.00 44.22 2.01
4708 5104 6.037500 GCTGAAGCAGATGTATGTGACATTAA 59.962 38.462 2.29 0.00 44.22 1.40
4709 5105 5.525012 GCTGAAGCAGATGTATGTGACATTA 59.475 40.000 2.29 0.00 44.22 1.90
4710 5106 4.334759 GCTGAAGCAGATGTATGTGACATT 59.665 41.667 2.29 0.00 44.22 2.71
4711 5107 3.875727 GCTGAAGCAGATGTATGTGACAT 59.124 43.478 2.65 2.65 45.66 3.06
4712 5108 3.055602 AGCTGAAGCAGATGTATGTGACA 60.056 43.478 4.90 0.00 45.16 3.58
4713 5109 3.529533 AGCTGAAGCAGATGTATGTGAC 58.470 45.455 4.90 0.00 45.16 3.67
4714 5110 3.900966 AGCTGAAGCAGATGTATGTGA 57.099 42.857 4.90 0.00 45.16 3.58
4715 5111 4.507021 CAGTAGCTGAAGCAGATGTATGTG 59.493 45.833 4.90 0.00 45.16 3.21
4716 5112 4.403752 TCAGTAGCTGAAGCAGATGTATGT 59.596 41.667 4.90 0.00 45.16 2.29
4752 5148 2.462565 GTCATTTTCGTTTGTGCGTGAC 59.537 45.455 0.00 0.00 30.95 3.67
4756 5152 1.442813 CGTGTCATTTTCGTTTGTGCG 59.557 47.619 0.00 0.00 0.00 5.34
4763 5159 0.041312 GCACAGCGTGTCATTTTCGT 60.041 50.000 9.76 0.00 35.75 3.85
4764 5160 0.041400 TGCACAGCGTGTCATTTTCG 60.041 50.000 9.76 0.00 35.75 3.46
4765 5161 1.780860 GTTGCACAGCGTGTCATTTTC 59.219 47.619 9.76 0.00 35.75 2.29
4773 5169 4.671549 CGGCAGTTGCACAGCGTG 62.672 66.667 6.43 4.61 44.36 5.34
4775 5171 3.584250 CTTCGGCAGTTGCACAGCG 62.584 63.158 6.43 0.54 44.36 5.18
4777 5173 1.129251 CATACTTCGGCAGTTGCACAG 59.871 52.381 6.43 1.21 44.36 3.66
4789 5185 0.725117 GGGTGTTTCGGCATACTTCG 59.275 55.000 0.00 0.00 0.00 3.79
4917 5324 3.951037 TGTTAGCTCAAACAGAAAAGGCA 59.049 39.130 0.00 0.00 34.50 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.