Multiple sequence alignment - TraesCS3B01G195800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G195800 chr3B 100.000 4614 0 0 1 4614 222244875 222249488 0.000000e+00 8521.0
1 TraesCS3B01G195800 chr3A 92.760 3398 133 47 3 3347 179538646 179535309 0.000000e+00 4807.0
2 TraesCS3B01G195800 chr3A 93.276 937 46 6 3374 4308 179535309 179534388 0.000000e+00 1365.0
3 TraesCS3B01G195800 chr3A 92.857 294 19 2 4319 4612 496598413 496598704 4.270000e-115 425.0
4 TraesCS3B01G195800 chr3D 94.589 1848 82 6 2279 4109 151439075 151440921 0.000000e+00 2843.0
5 TraesCS3B01G195800 chr3D 87.338 1698 125 42 601 2249 151437419 151439075 0.000000e+00 1862.0
6 TraesCS3B01G195800 chr3D 89.298 570 22 13 1 564 151436876 151437412 0.000000e+00 678.0
7 TraesCS3B01G195800 chr3D 95.935 123 4 1 4100 4222 151440944 151441065 1.010000e-46 198.0
8 TraesCS3B01G195800 chr3D 95.775 71 3 0 4208 4278 151441085 151441155 1.050000e-21 115.0
9 TraesCS3B01G195800 chr3D 100.000 45 0 0 4264 4308 151441394 151441438 2.960000e-12 84.2
10 TraesCS3B01G195800 chr3D 97.368 38 1 0 1299 1336 429303004 429303041 1.070000e-06 65.8
11 TraesCS3B01G195800 chrUn 98.973 292 3 0 4323 4614 2465261 2465552 1.470000e-144 523.0
12 TraesCS3B01G195800 chr1B 98.973 292 3 0 4323 4614 14988196 14988487 1.470000e-144 523.0
13 TraesCS3B01G195800 chr1B 98.649 296 3 1 4319 4614 301296079 301295785 1.470000e-144 523.0
14 TraesCS3B01G195800 chr1B 95.946 296 11 1 4319 4614 419275354 419275648 3.230000e-131 479.0
15 TraesCS3B01G195800 chr1B 89.552 335 26 7 1516 1846 602238787 602239116 2.570000e-112 416.0
16 TraesCS3B01G195800 chr1B 86.250 320 31 6 1516 1832 66928326 66928635 7.400000e-88 335.0
17 TraesCS3B01G195800 chr1B 98.113 53 1 0 1961 2013 66929104 66929156 4.920000e-15 93.5
18 TraesCS3B01G195800 chr1B 97.368 38 1 0 1299 1336 327570802 327570839 1.070000e-06 65.8
19 TraesCS3B01G195800 chr5B 94.702 302 14 2 4314 4614 398807475 398807175 6.990000e-128 468.0
20 TraesCS3B01G195800 chr6B 93.537 294 18 1 4319 4612 683421239 683421531 1.970000e-118 436.0
21 TraesCS3B01G195800 chr6B 82.328 464 71 11 1017 1476 434184514 434184970 4.330000e-105 392.0
22 TraesCS3B01G195800 chr4B 93.515 293 18 1 4323 4614 65528210 65528502 7.090000e-118 435.0
23 TraesCS3B01G195800 chr4B 93.174 293 19 1 4323 4614 65100177 65100469 3.300000e-116 429.0
24 TraesCS3B01G195800 chr6A 82.189 466 68 14 1017 1476 389758286 389758742 2.010000e-103 387.0
25 TraesCS3B01G195800 chr7A 85.714 196 17 4 1557 1751 165443491 165443306 3.640000e-46 196.0
26 TraesCS3B01G195800 chr7D 97.368 38 1 0 1299 1336 619809261 619809298 1.070000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G195800 chr3B 222244875 222249488 4613 False 8521.000000 8521 100.0000 1 4614 1 chr3B.!!$F1 4613
1 TraesCS3B01G195800 chr3A 179534388 179538646 4258 True 3086.000000 4807 93.0180 3 4308 2 chr3A.!!$R1 4305
2 TraesCS3B01G195800 chr3D 151436876 151441438 4562 False 963.366667 2843 93.8225 1 4308 6 chr3D.!!$F2 4307
3 TraesCS3B01G195800 chr1B 66928326 66929156 830 False 214.250000 335 92.1815 1516 2013 2 chr1B.!!$F5 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 588 0.033601 TCTTGTGGTTGTGGCCTTGT 60.034 50.0 3.32 0.0 0.0 3.16 F
581 589 0.102844 CTTGTGGTTGTGGCCTTGTG 59.897 55.0 3.32 0.0 0.0 3.33 F
2104 2526 0.467290 TGTTTGCTTGGGGGACAGTC 60.467 55.0 0.00 0.0 0.0 3.51 F
2806 3234 0.179032 ACAACAACGGCATGACTCCA 60.179 50.0 0.00 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2437 2865 0.981183 ACGCTGTATTCCCTTGGTCA 59.019 50.0 0.00 0.0 0.00 4.02 R
2790 3218 0.603707 CAGTGGAGTCATGCCGTTGT 60.604 55.0 0.00 0.0 0.00 3.32 R
3079 3513 0.605589 GTCCCAGGGTTCCAAGTTCG 60.606 60.0 5.01 0.0 0.00 3.95 R
4565 5326 0.029567 AATCGCCACGACTCTCGATC 59.970 55.0 0.00 0.0 43.74 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.207614 GGTCCAAATCATTATCCTCTTTAGCC 59.792 42.308 0.00 0.00 0.00 3.93
69 70 1.380524 CAGCAGGCATCCTTCTCTTG 58.619 55.000 0.00 0.00 0.00 3.02
166 167 7.606456 TGGCTGTAGAATAAGTAAGTTCCAAAG 59.394 37.037 0.00 0.00 0.00 2.77
306 310 3.879932 AACTCGCTTGTTTCTTGCTAC 57.120 42.857 0.00 0.00 0.00 3.58
309 313 4.238514 ACTCGCTTGTTTCTTGCTACTAG 58.761 43.478 0.00 0.00 0.00 2.57
314 318 5.846473 CGCTTGTTTCTTGCTACTAGTTTTC 59.154 40.000 0.00 0.00 0.00 2.29
317 321 7.254795 GCTTGTTTCTTGCTACTAGTTTTCTCA 60.255 37.037 0.00 0.00 0.00 3.27
319 323 6.200286 TGTTTCTTGCTACTAGTTTTCTCACG 59.800 38.462 0.00 0.00 0.00 4.35
320 324 4.235360 TCTTGCTACTAGTTTTCTCACGC 58.765 43.478 0.00 0.00 0.00 5.34
322 326 3.575630 TGCTACTAGTTTTCTCACGCAG 58.424 45.455 0.00 0.00 0.00 5.18
324 328 4.082190 TGCTACTAGTTTTCTCACGCAGAT 60.082 41.667 0.00 0.00 0.00 2.90
325 329 4.501198 GCTACTAGTTTTCTCACGCAGATC 59.499 45.833 0.00 0.00 0.00 2.75
326 330 4.521130 ACTAGTTTTCTCACGCAGATCA 57.479 40.909 0.00 0.00 0.00 2.92
327 331 4.883083 ACTAGTTTTCTCACGCAGATCAA 58.117 39.130 0.00 0.00 0.00 2.57
328 332 5.482908 ACTAGTTTTCTCACGCAGATCAAT 58.517 37.500 0.00 0.00 0.00 2.57
336 340 6.887376 TCTCACGCAGATCAATTAGTTAAC 57.113 37.500 0.00 0.00 0.00 2.01
400 404 7.213678 TCTTGCCGTAAATCCATTTTTCTTTT 58.786 30.769 0.00 0.00 0.00 2.27
404 409 6.425417 GCCGTAAATCCATTTTTCTTTTTGGA 59.575 34.615 0.00 0.00 42.18 3.53
405 410 7.360017 GCCGTAAATCCATTTTTCTTTTTGGAG 60.360 37.037 0.00 0.00 41.33 3.86
406 411 7.117667 CCGTAAATCCATTTTTCTTTTTGGAGG 59.882 37.037 0.00 0.00 41.33 4.30
407 412 7.117667 CGTAAATCCATTTTTCTTTTTGGAGGG 59.882 37.037 0.00 0.00 41.33 4.30
408 413 6.762077 AATCCATTTTTCTTTTTGGAGGGA 57.238 33.333 0.00 0.00 41.33 4.20
409 414 5.806654 TCCATTTTTCTTTTTGGAGGGAG 57.193 39.130 0.00 0.00 33.40 4.30
410 415 4.592778 TCCATTTTTCTTTTTGGAGGGAGG 59.407 41.667 0.00 0.00 33.40 4.30
411 416 4.263025 CCATTTTTCTTTTTGGAGGGAGGG 60.263 45.833 0.00 0.00 0.00 4.30
412 417 3.983533 TTTTCTTTTTGGAGGGAGGGA 57.016 42.857 0.00 0.00 0.00 4.20
413 418 3.525800 TTTCTTTTTGGAGGGAGGGAG 57.474 47.619 0.00 0.00 0.00 4.30
414 419 1.372501 TCTTTTTGGAGGGAGGGAGG 58.627 55.000 0.00 0.00 0.00 4.30
415 420 0.332972 CTTTTTGGAGGGAGGGAGGG 59.667 60.000 0.00 0.00 0.00 4.30
416 421 0.103608 TTTTTGGAGGGAGGGAGGGA 60.104 55.000 0.00 0.00 0.00 4.20
438 443 1.522900 GAGGGAGGGATGGAATGGAA 58.477 55.000 0.00 0.00 0.00 3.53
439 444 2.068977 GAGGGAGGGATGGAATGGAAT 58.931 52.381 0.00 0.00 0.00 3.01
440 445 1.785208 AGGGAGGGATGGAATGGAATG 59.215 52.381 0.00 0.00 0.00 2.67
441 446 1.203100 GGGAGGGATGGAATGGAATGG 60.203 57.143 0.00 0.00 0.00 3.16
442 447 1.782752 GGAGGGATGGAATGGAATGGA 59.217 52.381 0.00 0.00 0.00 3.41
509 514 0.519077 CTGCGCTTGAAAAGGTCTCC 59.481 55.000 9.73 0.00 46.35 3.71
536 544 2.285368 ATGGCCCCTCTCGTTCCA 60.285 61.111 0.00 0.00 0.00 3.53
542 550 0.912486 CCCCTCTCGTTCCATTTCCT 59.088 55.000 0.00 0.00 0.00 3.36
550 558 1.732259 CGTTCCATTTCCTCTTGACGG 59.268 52.381 0.00 0.00 0.00 4.79
568 576 1.078567 GCCTGCCTCTCTCTTGTGG 60.079 63.158 0.00 0.00 0.00 4.17
575 583 1.517242 CTCTCTCTTGTGGTTGTGGC 58.483 55.000 0.00 0.00 0.00 5.01
576 584 0.108585 TCTCTCTTGTGGTTGTGGCC 59.891 55.000 0.00 0.00 0.00 5.36
579 587 0.670162 CTCTTGTGGTTGTGGCCTTG 59.330 55.000 3.32 0.00 0.00 3.61
580 588 0.033601 TCTTGTGGTTGTGGCCTTGT 60.034 50.000 3.32 0.00 0.00 3.16
581 589 0.102844 CTTGTGGTTGTGGCCTTGTG 59.897 55.000 3.32 0.00 0.00 3.33
582 590 1.326213 TTGTGGTTGTGGCCTTGTGG 61.326 55.000 3.32 0.00 0.00 4.17
583 591 2.123511 TGGTTGTGGCCTTGTGGG 60.124 61.111 3.32 0.00 38.36 4.61
584 592 2.123468 GGTTGTGGCCTTGTGGGT 60.123 61.111 3.32 0.00 37.43 4.51
585 593 1.760480 GGTTGTGGCCTTGTGGGTT 60.760 57.895 3.32 0.00 37.43 4.11
586 594 1.739667 GTTGTGGCCTTGTGGGTTC 59.260 57.895 3.32 0.00 37.43 3.62
588 596 2.983592 GTGGCCTTGTGGGTTCCG 60.984 66.667 3.32 0.00 37.43 4.30
589 597 4.278513 TGGCCTTGTGGGTTCCGG 62.279 66.667 3.32 0.00 37.43 5.14
660 668 0.687427 GGAGCCTCTGCCTCTCTCTT 60.687 60.000 0.00 0.00 38.69 2.85
719 737 3.825014 GCCCGTATCTCTGAGGTATTGTA 59.175 47.826 4.59 0.00 0.00 2.41
851 869 1.727022 CTTTGAAGCTGCCGCAACG 60.727 57.895 2.05 0.00 39.10 4.10
944 979 0.975135 TGTTCATGGCAAATGGGTGG 59.025 50.000 0.00 0.00 0.00 4.61
946 981 0.908656 TTCATGGCAAATGGGTGGGG 60.909 55.000 0.00 0.00 0.00 4.96
1158 1205 1.138661 CTCATCAAGCTCACCTCCCTC 59.861 57.143 0.00 0.00 0.00 4.30
1482 1529 3.869272 CGGATGCTGCTCAACGCC 61.869 66.667 0.00 0.00 38.05 5.68
1491 1538 2.661537 CTCAACGCCGTGCTGTCA 60.662 61.111 0.00 0.00 0.00 3.58
1492 1539 2.029288 CTCAACGCCGTGCTGTCAT 61.029 57.895 0.00 0.00 0.00 3.06
1689 1742 4.120331 GGCGCCACCATCTTGCAC 62.120 66.667 24.80 0.00 38.86 4.57
1722 1775 0.623723 GGGGCCAAGTTGAGGTGATA 59.376 55.000 4.39 0.00 0.00 2.15
1748 1804 7.978975 ACTACTTCTGCTTCTGAATCTTGATAC 59.021 37.037 0.00 0.00 0.00 2.24
1770 1826 3.281727 TGAGTGCCTCAGTTTCAGTTT 57.718 42.857 1.25 0.00 35.39 2.66
1910 1977 9.201989 TCTAATGAGATTAGTCACCATTACAGT 57.798 33.333 8.16 0.00 42.21 3.55
2099 2521 1.228552 GCTCTGTTTGCTTGGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
2104 2526 0.467290 TGTTTGCTTGGGGGACAGTC 60.467 55.000 0.00 0.00 0.00 3.51
2123 2545 2.225963 GTCAGCTCATGATATTGCCTGC 59.774 50.000 0.00 0.00 40.92 4.85
2147 2569 7.227711 TGCATCTACAAAAGTGCTTAACAACTA 59.772 33.333 0.00 0.00 34.94 2.24
2148 2570 8.073768 GCATCTACAAAAGTGCTTAACAACTAA 58.926 33.333 0.00 0.00 32.66 2.24
2149 2571 9.599322 CATCTACAAAAGTGCTTAACAACTAAG 57.401 33.333 0.00 0.00 40.17 2.18
2150 2572 8.726870 TCTACAAAAGTGCTTAACAACTAAGT 57.273 30.769 0.00 0.00 39.49 2.24
2151 2573 9.169592 TCTACAAAAGTGCTTAACAACTAAGTT 57.830 29.630 0.00 0.00 39.49 2.66
2187 2609 3.442100 GCTTGCAGGAATTATTCAGTGC 58.558 45.455 18.70 18.70 39.98 4.40
2272 2694 8.485392 TCATTCTAAATCATATGGTGTCTCACA 58.515 33.333 2.13 0.00 35.86 3.58
2286 2708 3.090037 GTCTCACAGTGGGAAGCTAGTA 58.910 50.000 4.12 0.00 0.00 1.82
2310 2732 3.581755 TCATCATTTCTTTTGCTGCAGC 58.418 40.909 31.89 31.89 42.50 5.25
2324 2746 2.876091 CTGCAGCATCAGGTTCATTTG 58.124 47.619 0.00 0.00 0.00 2.32
2437 2865 6.072948 CCTTCGATATCGTCAACTCTGTAGAT 60.073 42.308 23.61 0.00 40.80 1.98
2790 3218 0.249155 GACCTGAACGTCCGTGACAA 60.249 55.000 0.00 0.00 32.09 3.18
2806 3234 0.179032 ACAACAACGGCATGACTCCA 60.179 50.000 0.00 0.00 0.00 3.86
2824 3252 4.223923 ACTCCACTGGATTTACTGAGGAAG 59.776 45.833 0.00 0.00 31.09 3.46
2881 3309 4.473520 CTGATTCTGGCCGGCGGT 62.474 66.667 28.82 5.87 0.00 5.68
2980 3408 2.159028 GGGGACTTCTTTCAGGATCTCG 60.159 54.545 0.00 0.00 0.00 4.04
2983 3411 3.386402 GGACTTCTTTCAGGATCTCGGAT 59.614 47.826 0.00 0.00 0.00 4.18
3010 3438 2.818751 TTTTCCTCCATGCGGGTATT 57.181 45.000 0.00 0.00 38.11 1.89
3097 3531 1.758592 CGAACTTGGAACCCTGGGA 59.241 57.895 22.23 0.00 0.00 4.37
3142 3576 3.782244 CAGAGCGCGGCAAGACAC 61.782 66.667 8.83 0.00 0.00 3.67
3189 3623 1.351017 TCGCAAGGGGAAGAAATCAGT 59.649 47.619 0.00 0.00 38.47 3.41
3357 3791 3.564644 CCATCAATGAAGATGAGGTCTGC 59.435 47.826 5.57 0.00 46.51 4.26
3364 3798 0.536260 AGATGAGGTCTGCAGCTGAC 59.464 55.000 20.43 21.21 35.31 3.51
3474 3908 0.532115 GAACCATCACCCAATGCCAC 59.468 55.000 0.00 0.00 0.00 5.01
3479 3913 2.769652 ATCACCCAATGCCACTGCGT 62.770 55.000 0.00 0.00 41.78 5.24
3539 3973 7.450634 TGAACAGTAGACTTATGAACCAGTACT 59.549 37.037 0.00 0.00 0.00 2.73
3549 3983 1.266989 GAACCAGTACTTTGGCACTGC 59.733 52.381 0.00 0.00 42.18 4.40
3571 4005 0.894141 CGCAATTGGGGGATTCAACA 59.106 50.000 14.43 0.00 0.00 3.33
3663 4097 1.966451 GACACCGCCTGTTTCCCTG 60.966 63.158 0.00 0.00 31.03 4.45
3671 4105 1.739067 CCTGTTTCCCTGGATTCGAC 58.261 55.000 0.00 0.00 34.15 4.20
3692 4126 5.219987 CGACGCTTAAAAGTTACAGCTACTC 60.220 44.000 0.00 0.00 0.00 2.59
3716 4156 3.130693 GGTAGCACCAGATAGACGACTTT 59.869 47.826 0.00 0.00 38.42 2.66
3729 4169 8.185505 AGATAGACGACTTTAGTCTTCATTGTC 58.814 37.037 15.89 10.60 45.74 3.18
3730 4170 5.154932 AGACGACTTTAGTCTTCATTGTCG 58.845 41.667 15.89 10.39 45.74 4.35
3737 4177 2.530701 AGTCTTCATTGTCGGAGTCCT 58.469 47.619 7.77 0.00 0.00 3.85
3752 4192 3.555168 GGAGTCCTTGTGGTGTTACTGAG 60.555 52.174 0.41 0.00 34.23 3.35
3776 4216 5.770663 GGAGGCCGAGATAGCTAATCATATA 59.229 44.000 0.00 0.00 37.03 0.86
3778 4218 7.225784 AGGCCGAGATAGCTAATCATATATG 57.774 40.000 6.36 6.36 37.03 1.78
3951 4391 9.746711 GAATGATTCGTTATACATCTGCAATAC 57.253 33.333 0.00 0.00 0.00 1.89
3954 4394 6.838198 TTCGTTATACATCTGCAATACCAC 57.162 37.500 0.00 0.00 0.00 4.16
3969 4409 1.004080 CCACAGTGCTCACCTCTGG 60.004 63.158 0.00 0.00 38.93 3.86
4049 4489 7.598493 GTGCCTGCTGTTATTCTTTTCATTTTA 59.402 33.333 0.00 0.00 0.00 1.52
4171 4645 7.712797 TCAACTACCAATGACTTTTCTTTTCC 58.287 34.615 0.00 0.00 0.00 3.13
4308 5069 7.901029 TGAATGTGTTTTGTCTAGAGAGATCT 58.099 34.615 0.00 0.00 33.14 2.75
4309 5070 8.370940 TGAATGTGTTTTGTCTAGAGAGATCTT 58.629 33.333 0.00 0.00 33.14 2.40
4310 5071 9.213799 GAATGTGTTTTGTCTAGAGAGATCTTT 57.786 33.333 0.00 0.00 33.14 2.52
4311 5072 9.566432 AATGTGTTTTGTCTAGAGAGATCTTTT 57.434 29.630 0.00 0.00 33.14 2.27
4312 5073 8.964476 TGTGTTTTGTCTAGAGAGATCTTTTT 57.036 30.769 0.00 0.00 33.14 1.94
4332 5093 5.553290 TTTTTCTTTTTCTTTTTGCGGGG 57.447 34.783 0.00 0.00 0.00 5.73
4333 5094 2.900716 TCTTTTTCTTTTTGCGGGGG 57.099 45.000 0.00 0.00 0.00 5.40
4334 5095 2.389715 TCTTTTTCTTTTTGCGGGGGA 58.610 42.857 0.00 0.00 0.00 4.81
4335 5096 2.766828 TCTTTTTCTTTTTGCGGGGGAA 59.233 40.909 0.00 0.00 0.00 3.97
4336 5097 3.197983 TCTTTTTCTTTTTGCGGGGGAAA 59.802 39.130 0.00 0.00 0.00 3.13
4337 5098 3.847671 TTTTCTTTTTGCGGGGGAAAT 57.152 38.095 0.00 0.00 0.00 2.17
4338 5099 4.957684 TTTTCTTTTTGCGGGGGAAATA 57.042 36.364 0.00 0.00 0.00 1.40
4339 5100 5.491323 TTTTCTTTTTGCGGGGGAAATAT 57.509 34.783 0.00 0.00 0.00 1.28
4340 5101 5.491323 TTTCTTTTTGCGGGGGAAATATT 57.509 34.783 0.00 0.00 0.00 1.28
4341 5102 4.464069 TCTTTTTGCGGGGGAAATATTG 57.536 40.909 0.00 0.00 0.00 1.90
4342 5103 4.090090 TCTTTTTGCGGGGGAAATATTGA 58.910 39.130 0.00 0.00 0.00 2.57
4343 5104 4.159506 TCTTTTTGCGGGGGAAATATTGAG 59.840 41.667 0.00 0.00 0.00 3.02
4344 5105 3.374042 TTTGCGGGGGAAATATTGAGA 57.626 42.857 0.00 0.00 0.00 3.27
4345 5106 2.638480 TGCGGGGGAAATATTGAGAG 57.362 50.000 0.00 0.00 0.00 3.20
4346 5107 1.239347 GCGGGGGAAATATTGAGAGC 58.761 55.000 0.00 0.00 0.00 4.09
4347 5108 1.202818 GCGGGGGAAATATTGAGAGCT 60.203 52.381 0.00 0.00 0.00 4.09
4348 5109 2.749800 GCGGGGGAAATATTGAGAGCTT 60.750 50.000 0.00 0.00 0.00 3.74
4349 5110 3.555966 CGGGGGAAATATTGAGAGCTTT 58.444 45.455 0.00 0.00 0.00 3.51
4350 5111 4.714632 CGGGGGAAATATTGAGAGCTTTA 58.285 43.478 0.00 0.00 0.00 1.85
4351 5112 5.316987 CGGGGGAAATATTGAGAGCTTTAT 58.683 41.667 0.00 0.00 0.00 1.40
4352 5113 5.770162 CGGGGGAAATATTGAGAGCTTTATT 59.230 40.000 0.00 0.00 0.00 1.40
4353 5114 6.940298 CGGGGGAAATATTGAGAGCTTTATTA 59.060 38.462 0.00 0.00 0.00 0.98
4354 5115 7.094762 CGGGGGAAATATTGAGAGCTTTATTAC 60.095 40.741 0.00 0.00 0.00 1.89
4355 5116 7.945109 GGGGGAAATATTGAGAGCTTTATTACT 59.055 37.037 0.00 0.00 0.00 2.24
4356 5117 9.355916 GGGGAAATATTGAGAGCTTTATTACTT 57.644 33.333 0.00 0.00 0.00 2.24
4367 5128 5.893143 GCTTTATTACTTGAAAGCGTTCG 57.107 39.130 7.88 0.00 45.70 3.95
4368 5129 4.259964 GCTTTATTACTTGAAAGCGTTCGC 59.740 41.667 9.24 9.24 45.70 4.70
4369 5130 5.600908 TTTATTACTTGAAAGCGTTCGCT 57.399 34.783 14.02 14.02 44.14 4.93
4370 5131 2.941891 TTACTTGAAAGCGTTCGCTG 57.058 45.000 20.05 9.80 41.76 5.18
4371 5132 1.144969 TACTTGAAAGCGTTCGCTGG 58.855 50.000 20.05 10.52 41.76 4.85
4372 5133 1.207593 CTTGAAAGCGTTCGCTGGG 59.792 57.895 20.05 5.79 41.76 4.45
4373 5134 2.786564 CTTGAAAGCGTTCGCTGGGC 62.787 60.000 20.05 12.52 41.76 5.36
4374 5135 3.353836 GAAAGCGTTCGCTGGGCA 61.354 61.111 20.05 0.00 41.76 5.36
4375 5136 3.314388 GAAAGCGTTCGCTGGGCAG 62.314 63.158 20.05 0.00 41.76 4.85
4376 5137 4.626081 AAGCGTTCGCTGGGCAGT 62.626 61.111 20.05 0.73 41.76 4.40
4379 5140 3.114616 CGTTCGCTGGGCAGTCAG 61.115 66.667 0.00 0.00 37.79 3.51
4401 5162 4.963318 CCAATAGGCTACTGATCAGGAA 57.037 45.455 26.08 13.04 0.00 3.36
4402 5163 4.892433 CCAATAGGCTACTGATCAGGAAG 58.108 47.826 26.08 21.72 0.00 3.46
4403 5164 4.314121 CAATAGGCTACTGATCAGGAAGC 58.686 47.826 30.12 30.12 39.41 3.86
4404 5165 2.173126 AGGCTACTGATCAGGAAGCT 57.827 50.000 33.34 23.37 39.78 3.74
4405 5166 3.320610 AGGCTACTGATCAGGAAGCTA 57.679 47.619 33.34 16.83 39.78 3.32
4406 5167 3.230134 AGGCTACTGATCAGGAAGCTAG 58.770 50.000 33.34 23.52 39.78 3.42
4407 5168 2.298729 GGCTACTGATCAGGAAGCTAGG 59.701 54.545 33.34 15.67 39.78 3.02
4408 5169 3.226777 GCTACTGATCAGGAAGCTAGGA 58.773 50.000 30.41 2.76 38.06 2.94
4409 5170 3.255642 GCTACTGATCAGGAAGCTAGGAG 59.744 52.174 30.41 12.01 38.06 3.69
4410 5171 3.396685 ACTGATCAGGAAGCTAGGAGT 57.603 47.619 26.08 0.00 0.00 3.85
4411 5172 4.528076 ACTGATCAGGAAGCTAGGAGTA 57.472 45.455 26.08 0.00 0.00 2.59
4412 5173 4.211920 ACTGATCAGGAAGCTAGGAGTAC 58.788 47.826 26.08 0.00 0.00 2.73
4413 5174 4.079443 ACTGATCAGGAAGCTAGGAGTACT 60.079 45.833 26.08 0.00 0.00 2.73
4414 5175 4.873010 TGATCAGGAAGCTAGGAGTACTT 58.127 43.478 0.00 0.00 0.00 2.24
4415 5176 5.273208 TGATCAGGAAGCTAGGAGTACTTT 58.727 41.667 0.00 0.00 0.00 2.66
4416 5177 5.361285 TGATCAGGAAGCTAGGAGTACTTTC 59.639 44.000 0.00 0.00 0.00 2.62
4417 5178 3.695060 TCAGGAAGCTAGGAGTACTTTCG 59.305 47.826 0.00 0.00 0.00 3.46
4418 5179 3.695060 CAGGAAGCTAGGAGTACTTTCGA 59.305 47.826 0.00 0.00 0.00 3.71
4419 5180 4.339814 CAGGAAGCTAGGAGTACTTTCGAT 59.660 45.833 0.00 0.00 0.00 3.59
4420 5181 4.581409 AGGAAGCTAGGAGTACTTTCGATC 59.419 45.833 0.00 0.00 0.00 3.69
4421 5182 4.261698 GGAAGCTAGGAGTACTTTCGATCC 60.262 50.000 0.00 0.00 0.00 3.36
4422 5183 3.899726 AGCTAGGAGTACTTTCGATCCA 58.100 45.455 0.00 0.00 34.08 3.41
4423 5184 3.886505 AGCTAGGAGTACTTTCGATCCAG 59.113 47.826 0.00 0.89 34.08 3.86
4424 5185 3.551250 GCTAGGAGTACTTTCGATCCAGC 60.551 52.174 0.00 6.30 34.08 4.85
4425 5186 2.741145 AGGAGTACTTTCGATCCAGCT 58.259 47.619 0.00 0.00 34.08 4.24
4426 5187 3.100671 AGGAGTACTTTCGATCCAGCTT 58.899 45.455 0.00 0.00 34.08 3.74
4427 5188 3.515901 AGGAGTACTTTCGATCCAGCTTT 59.484 43.478 0.00 0.00 34.08 3.51
4428 5189 3.866327 GGAGTACTTTCGATCCAGCTTTC 59.134 47.826 0.00 0.00 0.00 2.62
4429 5190 3.512680 AGTACTTTCGATCCAGCTTTCG 58.487 45.455 4.51 4.51 36.72 3.46
4430 5191 1.726853 ACTTTCGATCCAGCTTTCGG 58.273 50.000 9.78 0.00 36.08 4.30
4431 5192 1.002087 ACTTTCGATCCAGCTTTCGGT 59.998 47.619 9.78 0.00 36.08 4.69
4432 5193 1.661112 CTTTCGATCCAGCTTTCGGTC 59.339 52.381 9.78 0.00 36.08 4.79
4433 5194 0.606096 TTCGATCCAGCTTTCGGTCA 59.394 50.000 9.78 0.00 36.08 4.02
4434 5195 0.108804 TCGATCCAGCTTTCGGTCAC 60.109 55.000 9.78 0.00 36.08 3.67
4435 5196 1.413767 CGATCCAGCTTTCGGTCACG 61.414 60.000 3.19 0.00 42.74 4.35
4436 5197 0.389948 GATCCAGCTTTCGGTCACGT 60.390 55.000 0.00 0.00 41.85 4.49
4437 5198 0.389948 ATCCAGCTTTCGGTCACGTC 60.390 55.000 0.00 0.00 41.85 4.34
4438 5199 1.300620 CCAGCTTTCGGTCACGTCA 60.301 57.895 0.00 0.00 41.85 4.35
4439 5200 0.878523 CCAGCTTTCGGTCACGTCAA 60.879 55.000 0.00 0.00 41.85 3.18
4440 5201 1.148310 CAGCTTTCGGTCACGTCAAT 58.852 50.000 0.00 0.00 41.85 2.57
4441 5202 1.531149 CAGCTTTCGGTCACGTCAATT 59.469 47.619 0.00 0.00 41.85 2.32
4442 5203 1.531149 AGCTTTCGGTCACGTCAATTG 59.469 47.619 0.00 0.00 41.85 2.32
4443 5204 1.263217 GCTTTCGGTCACGTCAATTGT 59.737 47.619 5.13 0.00 41.85 2.71
4444 5205 2.903678 CTTTCGGTCACGTCAATTGTG 58.096 47.619 5.13 2.17 41.85 3.33
4445 5206 0.584396 TTCGGTCACGTCAATTGTGC 59.416 50.000 5.13 0.00 41.85 4.57
4446 5207 0.530870 TCGGTCACGTCAATTGTGCA 60.531 50.000 5.13 0.00 41.85 4.57
4447 5208 0.306228 CGGTCACGTCAATTGTGCAA 59.694 50.000 5.13 0.00 37.26 4.08
4448 5209 1.660052 CGGTCACGTCAATTGTGCAAG 60.660 52.381 5.13 0.00 37.26 4.01
4449 5210 1.398595 GTCACGTCAATTGTGCAAGC 58.601 50.000 5.13 0.00 37.26 4.01
4450 5211 1.002468 GTCACGTCAATTGTGCAAGCT 60.002 47.619 5.13 0.00 37.26 3.74
4451 5212 1.675483 TCACGTCAATTGTGCAAGCTT 59.325 42.857 5.13 0.00 37.26 3.74
4452 5213 1.782569 CACGTCAATTGTGCAAGCTTG 59.217 47.619 22.44 22.44 0.00 4.01
4474 5235 2.804986 TGGCACAAATATGAGCAGGA 57.195 45.000 1.01 0.00 43.92 3.86
4475 5236 2.368439 TGGCACAAATATGAGCAGGAC 58.632 47.619 1.01 0.00 43.92 3.85
4476 5237 1.678101 GGCACAAATATGAGCAGGACC 59.322 52.381 1.01 0.00 43.92 4.46
4477 5238 2.368439 GCACAAATATGAGCAGGACCA 58.632 47.619 0.00 0.00 42.02 4.02
4478 5239 2.954318 GCACAAATATGAGCAGGACCAT 59.046 45.455 0.00 0.00 42.02 3.55
4479 5240 3.382546 GCACAAATATGAGCAGGACCATT 59.617 43.478 0.00 0.00 42.02 3.16
4480 5241 4.580167 GCACAAATATGAGCAGGACCATTA 59.420 41.667 0.00 0.00 42.02 1.90
4481 5242 5.278169 GCACAAATATGAGCAGGACCATTAG 60.278 44.000 0.00 0.00 42.02 1.73
4482 5243 4.823989 ACAAATATGAGCAGGACCATTAGC 59.176 41.667 0.00 0.00 0.00 3.09
4483 5244 3.710209 ATATGAGCAGGACCATTAGCC 57.290 47.619 0.00 0.00 0.00 3.93
4484 5245 0.107456 ATGAGCAGGACCATTAGCCG 59.893 55.000 0.00 0.00 0.00 5.52
4485 5246 0.975556 TGAGCAGGACCATTAGCCGA 60.976 55.000 0.00 0.00 0.00 5.54
4486 5247 0.394565 GAGCAGGACCATTAGCCGAT 59.605 55.000 0.00 0.00 0.00 4.18
4487 5248 0.394565 AGCAGGACCATTAGCCGATC 59.605 55.000 0.00 0.00 0.00 3.69
4488 5249 0.394565 GCAGGACCATTAGCCGATCT 59.605 55.000 0.00 0.00 0.00 2.75
4489 5250 1.202698 GCAGGACCATTAGCCGATCTT 60.203 52.381 0.00 0.00 0.00 2.40
4490 5251 2.037251 GCAGGACCATTAGCCGATCTTA 59.963 50.000 0.00 0.00 0.00 2.10
4491 5252 3.654414 CAGGACCATTAGCCGATCTTAC 58.346 50.000 0.00 0.00 0.00 2.34
4492 5253 3.069586 CAGGACCATTAGCCGATCTTACA 59.930 47.826 0.00 0.00 0.00 2.41
4493 5254 3.709653 AGGACCATTAGCCGATCTTACAA 59.290 43.478 0.00 0.00 0.00 2.41
4494 5255 4.348168 AGGACCATTAGCCGATCTTACAAT 59.652 41.667 0.00 0.00 0.00 2.71
4495 5256 5.542635 AGGACCATTAGCCGATCTTACAATA 59.457 40.000 0.00 0.00 0.00 1.90
4496 5257 6.213600 AGGACCATTAGCCGATCTTACAATAT 59.786 38.462 0.00 0.00 0.00 1.28
4497 5258 6.313905 GGACCATTAGCCGATCTTACAATATG 59.686 42.308 0.00 0.00 0.00 1.78
4498 5259 6.173339 ACCATTAGCCGATCTTACAATATGG 58.827 40.000 0.00 0.00 35.94 2.74
4499 5260 5.065218 CCATTAGCCGATCTTACAATATGGC 59.935 44.000 0.00 0.00 41.27 4.40
4500 5261 2.688507 AGCCGATCTTACAATATGGCG 58.311 47.619 0.00 0.00 45.44 5.69
4501 5262 2.299013 AGCCGATCTTACAATATGGCGA 59.701 45.455 0.00 0.00 45.44 5.54
4502 5263 3.064207 GCCGATCTTACAATATGGCGAA 58.936 45.455 0.00 0.00 0.00 4.70
4503 5264 3.684788 GCCGATCTTACAATATGGCGAAT 59.315 43.478 0.00 0.00 0.00 3.34
4504 5265 4.868171 GCCGATCTTACAATATGGCGAATA 59.132 41.667 0.00 0.00 0.00 1.75
4505 5266 5.523916 GCCGATCTTACAATATGGCGAATAT 59.476 40.000 0.00 0.00 32.49 1.28
4506 5267 6.292381 GCCGATCTTACAATATGGCGAATATC 60.292 42.308 0.00 0.00 30.68 1.63
4507 5268 6.756542 CCGATCTTACAATATGGCGAATATCA 59.243 38.462 0.00 0.00 30.68 2.15
4508 5269 7.277760 CCGATCTTACAATATGGCGAATATCAA 59.722 37.037 0.00 0.00 30.68 2.57
4509 5270 8.655970 CGATCTTACAATATGGCGAATATCAAA 58.344 33.333 0.00 0.00 30.68 2.69
4535 5296 4.104696 GTGAAACTACCAGAGAGCTCTC 57.895 50.000 32.45 32.45 43.17 3.20
4536 5297 3.093057 TGAAACTACCAGAGAGCTCTCC 58.907 50.000 34.87 19.83 43.88 3.71
4537 5298 2.909504 AACTACCAGAGAGCTCTCCA 57.090 50.000 34.87 19.19 43.88 3.86
4538 5299 2.909504 ACTACCAGAGAGCTCTCCAA 57.090 50.000 34.87 19.16 43.88 3.53
4539 5300 3.396685 ACTACCAGAGAGCTCTCCAAT 57.603 47.619 34.87 23.65 43.88 3.16
4540 5301 3.718723 ACTACCAGAGAGCTCTCCAATT 58.281 45.455 34.87 21.13 43.88 2.32
4541 5302 4.100373 ACTACCAGAGAGCTCTCCAATTT 58.900 43.478 34.87 17.28 43.88 1.82
4542 5303 3.625649 ACCAGAGAGCTCTCCAATTTC 57.374 47.619 34.87 13.82 43.88 2.17
4543 5304 3.180507 ACCAGAGAGCTCTCCAATTTCT 58.819 45.455 34.87 15.86 43.88 2.52
4544 5305 4.357325 ACCAGAGAGCTCTCCAATTTCTA 58.643 43.478 34.87 0.00 43.88 2.10
4545 5306 4.780021 ACCAGAGAGCTCTCCAATTTCTAA 59.220 41.667 34.87 0.00 43.88 2.10
4546 5307 5.115480 CCAGAGAGCTCTCCAATTTCTAAC 58.885 45.833 34.87 10.93 43.88 2.34
4547 5308 5.337894 CCAGAGAGCTCTCCAATTTCTAACA 60.338 44.000 34.87 0.00 43.88 2.41
4548 5309 6.169094 CAGAGAGCTCTCCAATTTCTAACAA 58.831 40.000 34.87 0.00 43.88 2.83
4549 5310 6.652481 CAGAGAGCTCTCCAATTTCTAACAAA 59.348 38.462 34.87 0.00 43.88 2.83
4550 5311 7.173907 CAGAGAGCTCTCCAATTTCTAACAAAA 59.826 37.037 34.87 0.00 43.88 2.44
4551 5312 7.887495 AGAGAGCTCTCCAATTTCTAACAAAAT 59.113 33.333 34.87 11.62 43.88 1.82
4552 5313 7.824672 AGAGCTCTCCAATTTCTAACAAAATG 58.175 34.615 11.45 0.00 0.00 2.32
4553 5314 6.928520 AGCTCTCCAATTTCTAACAAAATGG 58.071 36.000 0.00 0.00 0.00 3.16
4554 5315 6.071165 AGCTCTCCAATTTCTAACAAAATGGG 60.071 38.462 2.14 0.00 39.98 4.00
4555 5316 6.295292 GCTCTCCAATTTCTAACAAAATGGGT 60.295 38.462 3.37 0.00 39.71 4.51
4556 5317 6.991938 TCTCCAATTTCTAACAAAATGGGTG 58.008 36.000 3.37 1.85 39.71 4.61
4557 5318 5.546526 TCCAATTTCTAACAAAATGGGTGC 58.453 37.500 3.37 0.00 39.71 5.01
4558 5319 4.694982 CCAATTTCTAACAAAATGGGTGCC 59.305 41.667 0.00 0.00 35.69 5.01
4559 5320 5.303971 CAATTTCTAACAAAATGGGTGCCA 58.696 37.500 0.00 0.00 38.19 4.92
4560 5321 4.329462 TTTCTAACAAAATGGGTGCCAC 57.671 40.909 0.00 0.00 35.80 5.01
4561 5322 1.883275 TCTAACAAAATGGGTGCCACG 59.117 47.619 0.00 0.00 35.80 4.94
4562 5323 1.883275 CTAACAAAATGGGTGCCACGA 59.117 47.619 0.00 0.00 35.80 4.35
4563 5324 0.387565 AACAAAATGGGTGCCACGAC 59.612 50.000 0.00 0.00 35.80 4.34
4564 5325 1.288752 CAAAATGGGTGCCACGACC 59.711 57.895 0.00 0.00 35.80 4.79
4565 5326 2.265182 AAAATGGGTGCCACGACCG 61.265 57.895 0.00 0.00 35.80 4.79
4566 5327 2.684192 AAAATGGGTGCCACGACCGA 62.684 55.000 0.00 0.00 35.80 4.69
4567 5328 2.478335 AAATGGGTGCCACGACCGAT 62.478 55.000 0.00 0.00 35.80 4.18
4568 5329 2.869503 AATGGGTGCCACGACCGATC 62.870 60.000 0.00 0.00 35.80 3.69
4578 5339 4.978773 GACCGATCGAGAGTCGTG 57.021 61.111 18.66 0.00 41.35 4.35
4579 5340 1.352404 GACCGATCGAGAGTCGTGG 59.648 63.158 18.66 0.00 41.35 4.94
4580 5341 2.024871 CCGATCGAGAGTCGTGGC 59.975 66.667 18.66 0.00 41.35 5.01
4581 5342 2.351322 CGATCGAGAGTCGTGGCG 60.351 66.667 10.26 0.00 41.35 5.69
4582 5343 2.810012 CGATCGAGAGTCGTGGCGA 61.810 63.158 10.26 0.00 41.35 5.54
4583 5344 1.649815 GATCGAGAGTCGTGGCGAT 59.350 57.895 11.19 11.19 45.07 4.58
4584 5345 0.029567 GATCGAGAGTCGTGGCGATT 59.970 55.000 12.17 0.00 42.78 3.34
4585 5346 0.248661 ATCGAGAGTCGTGGCGATTG 60.249 55.000 0.00 0.00 40.18 2.67
4586 5347 1.154016 CGAGAGTCGTGGCGATTGT 60.154 57.895 0.00 0.00 38.42 2.71
4587 5348 0.732880 CGAGAGTCGTGGCGATTGTT 60.733 55.000 0.00 0.00 38.42 2.83
4588 5349 0.992802 GAGAGTCGTGGCGATTGTTC 59.007 55.000 0.00 0.00 38.42 3.18
4589 5350 0.389948 AGAGTCGTGGCGATTGTTCC 60.390 55.000 0.00 0.00 38.42 3.62
4590 5351 0.669318 GAGTCGTGGCGATTGTTCCA 60.669 55.000 0.00 0.00 38.42 3.53
4591 5352 0.670546 AGTCGTGGCGATTGTTCCAG 60.671 55.000 0.00 0.00 38.42 3.86
4592 5353 0.669318 GTCGTGGCGATTGTTCCAGA 60.669 55.000 0.00 0.00 38.42 3.86
4593 5354 0.389817 TCGTGGCGATTGTTCCAGAG 60.390 55.000 0.00 0.00 32.15 3.35
4594 5355 1.361668 CGTGGCGATTGTTCCAGAGG 61.362 60.000 0.00 0.00 32.15 3.69
4595 5356 0.321653 GTGGCGATTGTTCCAGAGGT 60.322 55.000 0.00 0.00 32.15 3.85
4596 5357 0.400213 TGGCGATTGTTCCAGAGGTT 59.600 50.000 0.00 0.00 0.00 3.50
4597 5358 0.804989 GGCGATTGTTCCAGAGGTTG 59.195 55.000 0.00 0.00 0.00 3.77
4611 5372 4.373116 GTTGGCGACCTCCGAGCA 62.373 66.667 0.00 0.00 41.76 4.26
4612 5373 4.069232 TTGGCGACCTCCGAGCAG 62.069 66.667 0.00 0.00 41.76 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.617947 CGAAAGGTAGGAGGCAGGCT 61.618 60.000 0.00 0.00 0.00 4.58
61 62 6.648192 AGGATTTGTCCAGATACAAGAGAAG 58.352 40.000 0.00 0.00 40.29 2.85
69 70 4.372656 CGGAAGAGGATTTGTCCAGATAC 58.627 47.826 0.00 0.00 0.00 2.24
108 109 1.569493 CGGTTTCCAGAAGTGTGCG 59.431 57.895 0.00 0.00 0.00 5.34
306 310 6.414408 AATTGATCTGCGTGAGAAAACTAG 57.586 37.500 0.00 0.00 33.12 2.57
309 313 6.170675 ACTAATTGATCTGCGTGAGAAAAC 57.829 37.500 0.00 0.00 33.12 2.43
314 318 5.812642 AGGTTAACTAATTGATCTGCGTGAG 59.187 40.000 5.42 0.00 0.00 3.51
317 321 7.040686 ACAAAAGGTTAACTAATTGATCTGCGT 60.041 33.333 18.12 0.00 33.03 5.24
319 323 8.915654 CAACAAAAGGTTAACTAATTGATCTGC 58.084 33.333 18.12 0.00 37.72 4.26
320 324 8.915654 GCAACAAAAGGTTAACTAATTGATCTG 58.084 33.333 18.12 13.89 37.72 2.90
322 326 8.810652 TGCAACAAAAGGTTAACTAATTGATC 57.189 30.769 18.12 0.00 37.72 2.92
324 328 7.223777 GCTTGCAACAAAAGGTTAACTAATTGA 59.776 33.333 18.12 1.33 37.72 2.57
325 329 7.010923 TGCTTGCAACAAAAGGTTAACTAATTG 59.989 33.333 5.42 10.15 37.72 2.32
326 330 7.044798 TGCTTGCAACAAAAGGTTAACTAATT 58.955 30.769 5.42 0.00 37.72 1.40
327 331 6.578023 TGCTTGCAACAAAAGGTTAACTAAT 58.422 32.000 5.42 0.00 37.72 1.73
328 332 5.967088 TGCTTGCAACAAAAGGTTAACTAA 58.033 33.333 5.42 0.00 37.72 2.24
336 340 4.405196 CAAGTTTTGCTTGCAACAAAAGG 58.595 39.130 26.14 19.06 46.68 3.11
400 404 2.787866 CTCCCTCCCTCCCTCCAA 59.212 66.667 0.00 0.00 0.00 3.53
404 409 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
405 410 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
406 411 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
407 412 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
408 413 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
409 414 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
410 415 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
411 416 2.416923 ATCCCTCCCTCCCTCCCTC 61.417 68.421 0.00 0.00 0.00 4.30
412 417 2.289979 ATCCCTCCCTCCCTCCCT 60.290 66.667 0.00 0.00 0.00 4.20
413 418 2.122189 CATCCCTCCCTCCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
414 419 2.122189 CCATCCCTCCCTCCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
415 420 0.104197 ATTCCATCCCTCCCTCCCTC 60.104 60.000 0.00 0.00 0.00 4.30
416 421 0.402566 CATTCCATCCCTCCCTCCCT 60.403 60.000 0.00 0.00 0.00 4.20
441 446 0.543749 CTGGAGAATGGGACCAGGTC 59.456 60.000 11.70 11.70 44.96 3.85
442 447 2.702093 CTGGAGAATGGGACCAGGT 58.298 57.895 0.00 0.00 44.96 4.00
457 462 0.040958 GCACGCAAGACAAAGTCTGG 60.041 55.000 0.00 0.00 42.59 3.86
509 514 2.124403 GGGGCCATGTGAGCTCTG 60.124 66.667 16.19 4.79 0.00 3.35
536 544 0.678048 GCAGGCCGTCAAGAGGAAAT 60.678 55.000 0.00 0.00 0.00 2.17
542 550 2.604686 AGAGGCAGGCCGTCAAGA 60.605 61.111 4.37 0.00 41.95 3.02
550 558 1.078567 CCACAAGAGAGAGGCAGGC 60.079 63.158 0.00 0.00 0.00 4.85
568 576 1.739667 GAACCCACAAGGCCACAAC 59.260 57.895 5.01 0.00 40.58 3.32
593 601 4.074526 TCGAGTGGCCAGCTCAGC 62.075 66.667 25.32 8.13 33.45 4.26
594 602 2.183811 CTCGAGTGGCCAGCTCAG 59.816 66.667 25.32 19.66 33.45 3.35
595 603 2.283173 TCTCGAGTGGCCAGCTCA 60.283 61.111 25.32 15.84 33.45 4.26
596 604 2.159819 TTGTCTCGAGTGGCCAGCTC 62.160 60.000 5.11 15.24 0.00 4.09
597 605 2.164865 CTTGTCTCGAGTGGCCAGCT 62.165 60.000 5.11 6.62 0.00 4.24
660 668 2.677524 GCCATGGGAGCAACTGCA 60.678 61.111 15.13 0.00 45.16 4.41
719 737 9.014297 AGCATTAATTTAACTCAACAGTAAGCT 57.986 29.630 0.00 0.00 30.14 3.74
851 869 0.681175 AACATCAAAGCAACTGGGCC 59.319 50.000 0.00 0.00 0.00 5.80
944 979 0.404426 AAGTTGAGCTAACCCACCCC 59.596 55.000 0.00 0.00 40.24 4.95
946 981 1.270678 ACGAAGTTGAGCTAACCCACC 60.271 52.381 0.00 0.00 37.78 4.61
1491 1538 3.528370 CCGTCTTCTCCGGCCGAT 61.528 66.667 30.73 0.00 38.85 4.18
1492 1539 4.728110 TCCGTCTTCTCCGGCCGA 62.728 66.667 30.73 12.25 45.09 5.54
1722 1775 6.352016 TCAAGATTCAGAAGCAGAAGTAGT 57.648 37.500 0.31 0.00 0.00 2.73
1833 1889 8.993852 AGTAAAATCTCAATCGATTTAATGCG 57.006 30.769 8.21 0.00 41.42 4.73
1834 1890 9.387123 GGAGTAAAATCTCAATCGATTTAATGC 57.613 33.333 8.21 0.00 41.42 3.56
1899 1966 8.786826 TCTCAGGTTTAATTACTGTAATGGTG 57.213 34.615 13.42 5.97 34.02 4.17
1908 1975 8.989980 GCGCTATTATTCTCAGGTTTAATTACT 58.010 33.333 0.00 0.00 0.00 2.24
1909 1976 8.770828 TGCGCTATTATTCTCAGGTTTAATTAC 58.229 33.333 9.73 0.00 0.00 1.89
1910 1977 8.770828 GTGCGCTATTATTCTCAGGTTTAATTA 58.229 33.333 9.73 0.00 0.00 1.40
1912 1979 6.073765 CGTGCGCTATTATTCTCAGGTTTAAT 60.074 38.462 9.73 0.00 0.00 1.40
1913 1980 5.233476 CGTGCGCTATTATTCTCAGGTTTAA 59.767 40.000 9.73 0.00 0.00 1.52
2038 2457 4.846779 TGCCAAAAGACTTATCACCAAC 57.153 40.909 0.00 0.00 0.00 3.77
2099 2521 3.136077 AGGCAATATCATGAGCTGACTGT 59.864 43.478 8.62 0.00 36.48 3.55
2104 2526 2.227194 TGCAGGCAATATCATGAGCTG 58.773 47.619 0.09 0.00 0.00 4.24
2123 2545 9.599322 CTTAGTTGTTAAGCACTTTTGTAGATG 57.401 33.333 0.00 0.00 32.89 2.90
2147 2569 4.323553 AGCGTGAGAACTTACTCAACTT 57.676 40.909 0.00 0.00 46.34 2.66
2148 2570 4.051922 CAAGCGTGAGAACTTACTCAACT 58.948 43.478 0.00 0.00 46.34 3.16
2149 2571 3.363084 GCAAGCGTGAGAACTTACTCAAC 60.363 47.826 2.99 0.00 46.34 3.18
2150 2572 2.800544 GCAAGCGTGAGAACTTACTCAA 59.199 45.455 2.99 0.00 46.34 3.02
2151 2573 2.223947 TGCAAGCGTGAGAACTTACTCA 60.224 45.455 2.99 0.00 43.39 3.41
2152 2574 2.404215 TGCAAGCGTGAGAACTTACTC 58.596 47.619 2.99 0.00 37.42 2.59
2270 2692 5.189736 TGATGAAATACTAGCTTCCCACTGT 59.810 40.000 0.00 0.00 0.00 3.55
2272 2694 5.957771 TGATGAAATACTAGCTTCCCACT 57.042 39.130 0.00 0.00 0.00 4.00
2286 2708 5.121768 GCTGCAGCAAAAGAAATGATGAAAT 59.878 36.000 33.36 0.00 36.32 2.17
2310 2732 5.575606 GCTTCAATGACAAATGAACCTGATG 59.424 40.000 3.61 0.00 32.46 3.07
2324 2746 9.304731 TGCAAAATCATTAATAGCTTCAATGAC 57.695 29.630 15.45 7.09 40.45 3.06
2437 2865 0.981183 ACGCTGTATTCCCTTGGTCA 59.019 50.000 0.00 0.00 0.00 4.02
2790 3218 0.603707 CAGTGGAGTCATGCCGTTGT 60.604 55.000 0.00 0.00 0.00 3.32
2806 3234 3.620966 GCTGCTTCCTCAGTAAATCCAGT 60.621 47.826 0.00 0.00 36.49 4.00
2824 3252 3.873883 GATGCTGTCTGCGGCTGC 61.874 66.667 11.65 11.65 46.77 5.25
2980 3408 3.287867 TGGAGGAAAATCTCAGCATCC 57.712 47.619 0.00 0.00 35.58 3.51
2983 3411 2.372264 GCATGGAGGAAAATCTCAGCA 58.628 47.619 0.00 0.00 35.58 4.41
3079 3513 0.605589 GTCCCAGGGTTCCAAGTTCG 60.606 60.000 5.01 0.00 0.00 3.95
3097 3531 2.327325 TCAGCCTCTTAAGACCAGGT 57.673 50.000 0.00 0.00 0.00 4.00
3142 3576 1.134461 CATCTGAGCAGGACCTTGAGG 60.134 57.143 0.00 0.00 42.17 3.86
3189 3623 3.338250 ATTCCTTGGGGCTGCCGA 61.338 61.111 13.40 0.26 0.00 5.54
3357 3791 2.256591 GGCAGTGTGTGGTCAGCTG 61.257 63.158 7.63 7.63 33.73 4.24
3364 3798 1.446907 GAGATTCAGGCAGTGTGTGG 58.553 55.000 0.00 0.00 0.00 4.17
3474 3908 1.229975 TGTGTGCCTGATCAACGCAG 61.230 55.000 15.54 0.00 32.08 5.18
3479 3913 1.955778 CTTTGGTGTGTGCCTGATCAA 59.044 47.619 0.00 0.00 0.00 2.57
3549 3983 1.321805 TGAATCCCCCAATTGCGCTG 61.322 55.000 9.73 0.00 0.00 5.18
3663 4097 5.520022 TGTAACTTTTAAGCGTCGAATCC 57.480 39.130 0.00 0.00 0.00 3.01
3671 4105 5.062308 CCAGAGTAGCTGTAACTTTTAAGCG 59.938 44.000 0.00 0.00 43.33 4.68
3716 4156 3.698289 AGGACTCCGACAATGAAGACTA 58.302 45.455 0.00 0.00 0.00 2.59
3721 4161 2.549992 CCACAAGGACTCCGACAATGAA 60.550 50.000 0.00 0.00 36.89 2.57
3729 4169 1.343465 AGTAACACCACAAGGACTCCG 59.657 52.381 0.00 0.00 38.69 4.63
3730 4170 2.367567 TCAGTAACACCACAAGGACTCC 59.632 50.000 0.00 0.00 38.69 3.85
3737 4177 1.071699 GCCTCCTCAGTAACACCACAA 59.928 52.381 0.00 0.00 0.00 3.33
3752 4192 2.171840 TGATTAGCTATCTCGGCCTCC 58.828 52.381 0.00 0.00 34.17 4.30
3797 4237 2.147958 GCACACTAACATTGGAACCGA 58.852 47.619 0.00 0.00 0.00 4.69
3803 4243 4.050553 CACAAAAGGCACACTAACATTGG 58.949 43.478 0.00 0.00 0.00 3.16
3951 4391 1.004080 CCAGAGGTGAGCACTGTGG 60.004 63.158 10.21 0.00 42.08 4.17
3954 4394 1.193323 AGATCCAGAGGTGAGCACTG 58.807 55.000 2.02 2.02 0.00 3.66
4310 5071 4.396478 CCCCCGCAAAAAGAAAAAGAAAAA 59.604 37.500 0.00 0.00 0.00 1.94
4311 5072 3.942115 CCCCCGCAAAAAGAAAAAGAAAA 59.058 39.130 0.00 0.00 0.00 2.29
4312 5073 3.197983 TCCCCCGCAAAAAGAAAAAGAAA 59.802 39.130 0.00 0.00 0.00 2.52
4313 5074 2.766828 TCCCCCGCAAAAAGAAAAAGAA 59.233 40.909 0.00 0.00 0.00 2.52
4314 5075 2.389715 TCCCCCGCAAAAAGAAAAAGA 58.610 42.857 0.00 0.00 0.00 2.52
4315 5076 2.900716 TCCCCCGCAAAAAGAAAAAG 57.099 45.000 0.00 0.00 0.00 2.27
4316 5077 3.629142 TTTCCCCCGCAAAAAGAAAAA 57.371 38.095 0.00 0.00 0.00 1.94
4317 5078 3.847671 ATTTCCCCCGCAAAAAGAAAA 57.152 38.095 0.00 0.00 30.86 2.29
4318 5079 5.012148 TCAATATTTCCCCCGCAAAAAGAAA 59.988 36.000 0.00 0.00 0.00 2.52
4319 5080 4.528596 TCAATATTTCCCCCGCAAAAAGAA 59.471 37.500 0.00 0.00 0.00 2.52
4320 5081 4.090090 TCAATATTTCCCCCGCAAAAAGA 58.910 39.130 0.00 0.00 0.00 2.52
4321 5082 4.159506 TCTCAATATTTCCCCCGCAAAAAG 59.840 41.667 0.00 0.00 0.00 2.27
4322 5083 4.090090 TCTCAATATTTCCCCCGCAAAAA 58.910 39.130 0.00 0.00 0.00 1.94
4323 5084 3.699038 CTCTCAATATTTCCCCCGCAAAA 59.301 43.478 0.00 0.00 0.00 2.44
4324 5085 3.287222 CTCTCAATATTTCCCCCGCAAA 58.713 45.455 0.00 0.00 0.00 3.68
4325 5086 2.930950 CTCTCAATATTTCCCCCGCAA 58.069 47.619 0.00 0.00 0.00 4.85
4326 5087 1.476833 GCTCTCAATATTTCCCCCGCA 60.477 52.381 0.00 0.00 0.00 5.69
4327 5088 1.202818 AGCTCTCAATATTTCCCCCGC 60.203 52.381 0.00 0.00 0.00 6.13
4328 5089 2.938956 AGCTCTCAATATTTCCCCCG 57.061 50.000 0.00 0.00 0.00 5.73
4329 5090 7.945109 AGTAATAAAGCTCTCAATATTTCCCCC 59.055 37.037 0.00 0.00 0.00 5.40
4330 5091 8.926092 AGTAATAAAGCTCTCAATATTTCCCC 57.074 34.615 0.00 0.00 0.00 4.81
4346 5107 5.893143 GCGAACGCTTTCAAGTAATAAAG 57.107 39.130 11.97 0.00 38.26 1.85
4362 5123 3.114616 CTGACTGCCCAGCGAACG 61.115 66.667 0.00 0.00 0.00 3.95
4380 5141 4.802248 GCTTCCTGATCAGTAGCCTATTGG 60.802 50.000 25.53 9.20 31.81 3.16
4381 5142 4.040217 AGCTTCCTGATCAGTAGCCTATTG 59.960 45.833 29.24 11.73 35.85 1.90
4382 5143 4.230455 AGCTTCCTGATCAGTAGCCTATT 58.770 43.478 29.24 16.65 35.85 1.73
4383 5144 3.855668 AGCTTCCTGATCAGTAGCCTAT 58.144 45.455 29.24 16.90 35.85 2.57
4384 5145 3.320610 AGCTTCCTGATCAGTAGCCTA 57.679 47.619 29.24 8.63 35.85 3.93
4385 5146 2.173126 AGCTTCCTGATCAGTAGCCT 57.827 50.000 29.24 19.61 35.85 4.58
4386 5147 2.298729 CCTAGCTTCCTGATCAGTAGCC 59.701 54.545 29.24 18.31 35.85 3.93
4387 5148 3.226777 TCCTAGCTTCCTGATCAGTAGC 58.773 50.000 27.28 27.28 35.63 3.58
4388 5149 4.469657 ACTCCTAGCTTCCTGATCAGTAG 58.530 47.826 21.11 17.43 0.00 2.57
4389 5150 4.528076 ACTCCTAGCTTCCTGATCAGTA 57.472 45.455 21.11 2.36 0.00 2.74
4390 5151 3.396685 ACTCCTAGCTTCCTGATCAGT 57.603 47.619 21.11 5.03 0.00 3.41
4391 5152 4.469657 AGTACTCCTAGCTTCCTGATCAG 58.530 47.826 16.24 16.24 0.00 2.90
4392 5153 4.528076 AGTACTCCTAGCTTCCTGATCA 57.472 45.455 0.00 0.00 0.00 2.92
4393 5154 5.506649 CGAAAGTACTCCTAGCTTCCTGATC 60.507 48.000 0.00 0.00 0.00 2.92
4394 5155 4.339814 CGAAAGTACTCCTAGCTTCCTGAT 59.660 45.833 0.00 0.00 0.00 2.90
4395 5156 3.695060 CGAAAGTACTCCTAGCTTCCTGA 59.305 47.826 0.00 0.00 0.00 3.86
4396 5157 3.695060 TCGAAAGTACTCCTAGCTTCCTG 59.305 47.826 0.00 0.00 0.00 3.86
4397 5158 3.965694 TCGAAAGTACTCCTAGCTTCCT 58.034 45.455 0.00 0.00 0.00 3.36
4398 5159 4.261698 GGATCGAAAGTACTCCTAGCTTCC 60.262 50.000 0.00 0.00 0.00 3.46
4399 5160 4.338682 TGGATCGAAAGTACTCCTAGCTTC 59.661 45.833 0.00 0.00 0.00 3.86
4400 5161 4.279145 TGGATCGAAAGTACTCCTAGCTT 58.721 43.478 0.00 0.00 0.00 3.74
4401 5162 3.886505 CTGGATCGAAAGTACTCCTAGCT 59.113 47.826 0.00 0.00 0.00 3.32
4402 5163 3.551250 GCTGGATCGAAAGTACTCCTAGC 60.551 52.174 0.00 5.84 0.00 3.42
4403 5164 3.886505 AGCTGGATCGAAAGTACTCCTAG 59.113 47.826 0.00 0.46 0.00 3.02
4404 5165 3.899726 AGCTGGATCGAAAGTACTCCTA 58.100 45.455 0.00 0.00 0.00 2.94
4405 5166 2.741145 AGCTGGATCGAAAGTACTCCT 58.259 47.619 0.00 0.00 0.00 3.69
4406 5167 3.528597 AAGCTGGATCGAAAGTACTCC 57.471 47.619 0.00 0.00 0.00 3.85
4407 5168 3.548268 CGAAAGCTGGATCGAAAGTACTC 59.452 47.826 10.36 0.00 41.43 2.59
4408 5169 3.512680 CGAAAGCTGGATCGAAAGTACT 58.487 45.455 10.36 0.00 41.43 2.73
4409 5170 2.603560 CCGAAAGCTGGATCGAAAGTAC 59.396 50.000 15.87 0.00 41.43 2.73
4410 5171 2.232941 ACCGAAAGCTGGATCGAAAGTA 59.767 45.455 15.87 0.00 41.43 2.24
4411 5172 1.002087 ACCGAAAGCTGGATCGAAAGT 59.998 47.619 15.87 5.30 41.43 2.66
4412 5173 1.661112 GACCGAAAGCTGGATCGAAAG 59.339 52.381 15.87 4.79 41.43 2.62
4413 5174 1.001520 TGACCGAAAGCTGGATCGAAA 59.998 47.619 15.87 1.73 41.43 3.46
4414 5175 0.606096 TGACCGAAAGCTGGATCGAA 59.394 50.000 15.87 2.02 41.43 3.71
4415 5176 0.108804 GTGACCGAAAGCTGGATCGA 60.109 55.000 15.87 0.00 41.43 3.59
4416 5177 1.413767 CGTGACCGAAAGCTGGATCG 61.414 60.000 9.22 9.22 38.74 3.69
4417 5178 0.389948 ACGTGACCGAAAGCTGGATC 60.390 55.000 0.00 0.00 37.88 3.36
4418 5179 0.389948 GACGTGACCGAAAGCTGGAT 60.390 55.000 0.00 0.00 37.88 3.41
4419 5180 1.006571 GACGTGACCGAAAGCTGGA 60.007 57.895 0.00 0.00 37.88 3.86
4420 5181 0.878523 TTGACGTGACCGAAAGCTGG 60.879 55.000 0.00 0.00 37.88 4.85
4421 5182 1.148310 ATTGACGTGACCGAAAGCTG 58.852 50.000 0.00 0.00 37.88 4.24
4422 5183 1.531149 CAATTGACGTGACCGAAAGCT 59.469 47.619 0.00 0.00 37.88 3.74
4423 5184 1.263217 ACAATTGACGTGACCGAAAGC 59.737 47.619 13.59 0.00 37.88 3.51
4424 5185 2.903678 CACAATTGACGTGACCGAAAG 58.096 47.619 13.59 0.00 36.43 2.62
4425 5186 1.003331 GCACAATTGACGTGACCGAAA 60.003 47.619 13.59 0.00 36.43 3.46
4426 5187 0.584396 GCACAATTGACGTGACCGAA 59.416 50.000 13.59 0.00 36.43 4.30
4427 5188 0.530870 TGCACAATTGACGTGACCGA 60.531 50.000 13.59 0.00 36.43 4.69
4428 5189 0.306228 TTGCACAATTGACGTGACCG 59.694 50.000 13.59 0.00 36.43 4.79
4429 5190 1.925946 GCTTGCACAATTGACGTGACC 60.926 52.381 13.59 0.00 36.43 4.02
4430 5191 1.002468 AGCTTGCACAATTGACGTGAC 60.002 47.619 13.59 0.00 36.43 3.67
4431 5192 1.308047 AGCTTGCACAATTGACGTGA 58.692 45.000 13.59 0.00 36.43 4.35
4432 5193 1.782569 CAAGCTTGCACAATTGACGTG 59.217 47.619 14.65 0.86 37.43 4.49
4433 5194 2.124011 CAAGCTTGCACAATTGACGT 57.876 45.000 14.65 0.00 0.00 4.34
4446 5207 3.258872 TCATATTTGTGCCAAGCAAGCTT 59.741 39.130 0.59 0.59 41.47 3.74
4447 5208 2.827322 TCATATTTGTGCCAAGCAAGCT 59.173 40.909 0.00 0.00 41.47 3.74
4448 5209 3.184541 CTCATATTTGTGCCAAGCAAGC 58.815 45.455 0.00 0.00 41.47 4.01
4449 5210 3.184541 GCTCATATTTGTGCCAAGCAAG 58.815 45.455 0.00 0.00 41.47 4.01
4450 5211 2.561858 TGCTCATATTTGTGCCAAGCAA 59.438 40.909 7.57 0.00 41.47 3.91
4451 5212 2.164827 CTGCTCATATTTGTGCCAAGCA 59.835 45.455 7.57 2.84 40.75 3.91
4452 5213 2.480759 CCTGCTCATATTTGTGCCAAGC 60.481 50.000 7.57 0.00 40.75 4.01
4453 5214 3.018856 TCCTGCTCATATTTGTGCCAAG 58.981 45.455 7.57 0.63 40.75 3.61
4454 5215 2.754552 GTCCTGCTCATATTTGTGCCAA 59.245 45.455 7.57 0.00 40.75 4.52
4455 5216 2.368439 GTCCTGCTCATATTTGTGCCA 58.632 47.619 7.57 0.00 40.75 4.92
4456 5217 1.678101 GGTCCTGCTCATATTTGTGCC 59.322 52.381 7.57 0.00 40.75 5.01
4457 5218 2.368439 TGGTCCTGCTCATATTTGTGC 58.632 47.619 3.60 3.60 41.60 4.57
4458 5219 5.278169 GCTAATGGTCCTGCTCATATTTGTG 60.278 44.000 0.00 0.00 0.00 3.33
4459 5220 4.823989 GCTAATGGTCCTGCTCATATTTGT 59.176 41.667 0.00 0.00 0.00 2.83
4460 5221 4.217118 GGCTAATGGTCCTGCTCATATTTG 59.783 45.833 0.00 0.00 0.00 2.32
4461 5222 4.401925 GGCTAATGGTCCTGCTCATATTT 58.598 43.478 0.00 0.00 0.00 1.40
4462 5223 3.557898 CGGCTAATGGTCCTGCTCATATT 60.558 47.826 0.00 0.00 0.00 1.28
4463 5224 2.027745 CGGCTAATGGTCCTGCTCATAT 60.028 50.000 0.00 0.00 0.00 1.78
4464 5225 1.344438 CGGCTAATGGTCCTGCTCATA 59.656 52.381 0.00 0.00 0.00 2.15
4465 5226 0.107456 CGGCTAATGGTCCTGCTCAT 59.893 55.000 0.00 0.00 0.00 2.90
4466 5227 0.975556 TCGGCTAATGGTCCTGCTCA 60.976 55.000 0.00 0.00 0.00 4.26
4467 5228 0.394565 ATCGGCTAATGGTCCTGCTC 59.605 55.000 0.00 0.00 0.00 4.26
4468 5229 0.394565 GATCGGCTAATGGTCCTGCT 59.605 55.000 0.00 0.00 0.00 4.24
4469 5230 0.394565 AGATCGGCTAATGGTCCTGC 59.605 55.000 0.00 0.00 0.00 4.85
4470 5231 2.918712 AAGATCGGCTAATGGTCCTG 57.081 50.000 0.00 0.00 0.00 3.86
4471 5232 3.305720 TGTAAGATCGGCTAATGGTCCT 58.694 45.455 0.00 0.00 0.00 3.85
4472 5233 3.746045 TGTAAGATCGGCTAATGGTCC 57.254 47.619 0.00 0.00 0.00 4.46
4473 5234 6.313905 CCATATTGTAAGATCGGCTAATGGTC 59.686 42.308 0.00 0.00 0.00 4.02
4474 5235 6.173339 CCATATTGTAAGATCGGCTAATGGT 58.827 40.000 0.00 0.00 0.00 3.55
4475 5236 5.065218 GCCATATTGTAAGATCGGCTAATGG 59.935 44.000 0.00 0.00 35.17 3.16
4476 5237 5.220472 CGCCATATTGTAAGATCGGCTAATG 60.220 44.000 0.00 0.00 35.89 1.90
4477 5238 4.870426 CGCCATATTGTAAGATCGGCTAAT 59.130 41.667 0.00 0.00 35.89 1.73
4478 5239 4.021807 TCGCCATATTGTAAGATCGGCTAA 60.022 41.667 0.00 0.00 35.89 3.09
4479 5240 3.508402 TCGCCATATTGTAAGATCGGCTA 59.492 43.478 0.00 0.00 35.89 3.93
4480 5241 2.299013 TCGCCATATTGTAAGATCGGCT 59.701 45.455 0.00 0.00 35.89 5.52
4481 5242 2.683968 TCGCCATATTGTAAGATCGGC 58.316 47.619 0.00 0.00 34.68 5.54
4482 5243 6.756542 TGATATTCGCCATATTGTAAGATCGG 59.243 38.462 0.00 0.00 0.00 4.18
4483 5244 7.755582 TGATATTCGCCATATTGTAAGATCG 57.244 36.000 0.00 0.00 0.00 3.69
4509 5270 5.685728 AGCTCTCTGGTAGTTTCACTTTTT 58.314 37.500 0.00 0.00 0.00 1.94
4510 5271 5.071115 AGAGCTCTCTGGTAGTTTCACTTTT 59.929 40.000 11.45 0.00 38.75 2.27
4511 5272 4.591072 AGAGCTCTCTGGTAGTTTCACTTT 59.409 41.667 11.45 0.00 38.75 2.66
4512 5273 4.156477 AGAGCTCTCTGGTAGTTTCACTT 58.844 43.478 11.45 0.00 38.75 3.16
4513 5274 3.761752 GAGAGCTCTCTGGTAGTTTCACT 59.238 47.826 32.25 0.00 40.61 3.41
4514 5275 3.119280 GGAGAGCTCTCTGGTAGTTTCAC 60.119 52.174 36.09 16.07 42.48 3.18
4515 5276 3.093057 GGAGAGCTCTCTGGTAGTTTCA 58.907 50.000 36.09 0.00 42.48 2.69
4516 5277 3.093057 TGGAGAGCTCTCTGGTAGTTTC 58.907 50.000 36.09 20.19 42.48 2.78
4517 5278 3.176924 TGGAGAGCTCTCTGGTAGTTT 57.823 47.619 36.09 4.01 42.48 2.66
4518 5279 2.909504 TGGAGAGCTCTCTGGTAGTT 57.090 50.000 36.09 4.80 42.48 2.24
4519 5280 2.909504 TTGGAGAGCTCTCTGGTAGT 57.090 50.000 36.09 5.58 42.48 2.73
4520 5281 4.405358 AGAAATTGGAGAGCTCTCTGGTAG 59.595 45.833 36.09 0.00 42.48 3.18
4521 5282 4.357325 AGAAATTGGAGAGCTCTCTGGTA 58.643 43.478 36.09 21.76 42.48 3.25
4522 5283 3.180507 AGAAATTGGAGAGCTCTCTGGT 58.819 45.455 36.09 21.97 42.48 4.00
4523 5284 3.910568 AGAAATTGGAGAGCTCTCTGG 57.089 47.619 36.09 0.00 42.48 3.86
4524 5285 5.728471 TGTTAGAAATTGGAGAGCTCTCTG 58.272 41.667 36.09 0.00 42.48 3.35
4525 5286 6.365970 TTGTTAGAAATTGGAGAGCTCTCT 57.634 37.500 36.09 20.86 42.48 3.10
4526 5287 7.440523 TTTTGTTAGAAATTGGAGAGCTCTC 57.559 36.000 31.89 31.89 42.14 3.20
4527 5288 7.094032 CCATTTTGTTAGAAATTGGAGAGCTCT 60.094 37.037 18.28 18.28 0.00 4.09
4528 5289 7.031975 CCATTTTGTTAGAAATTGGAGAGCTC 58.968 38.462 5.27 5.27 0.00 4.09
4529 5290 6.071165 CCCATTTTGTTAGAAATTGGAGAGCT 60.071 38.462 14.63 0.00 35.08 4.09
4530 5291 6.101997 CCCATTTTGTTAGAAATTGGAGAGC 58.898 40.000 14.63 0.00 35.08 4.09
4531 5292 7.092716 CACCCATTTTGTTAGAAATTGGAGAG 58.907 38.462 14.63 4.11 36.08 3.20
4532 5293 6.518200 GCACCCATTTTGTTAGAAATTGGAGA 60.518 38.462 14.63 0.00 36.08 3.71
4533 5294 5.639082 GCACCCATTTTGTTAGAAATTGGAG 59.361 40.000 14.63 9.29 36.08 3.86
4534 5295 5.512232 GGCACCCATTTTGTTAGAAATTGGA 60.512 40.000 14.63 0.00 36.08 3.53
4535 5296 4.694982 GGCACCCATTTTGTTAGAAATTGG 59.305 41.667 8.28 8.28 37.65 3.16
4536 5297 5.179182 GTGGCACCCATTTTGTTAGAAATTG 59.821 40.000 6.29 0.00 35.28 2.32
4537 5298 5.304778 GTGGCACCCATTTTGTTAGAAATT 58.695 37.500 6.29 0.00 35.28 1.82
4538 5299 4.560513 CGTGGCACCCATTTTGTTAGAAAT 60.561 41.667 12.86 0.00 35.28 2.17
4539 5300 3.243569 CGTGGCACCCATTTTGTTAGAAA 60.244 43.478 12.86 0.00 35.28 2.52
4540 5301 2.294791 CGTGGCACCCATTTTGTTAGAA 59.705 45.455 12.86 0.00 35.28 2.10
4541 5302 1.883275 CGTGGCACCCATTTTGTTAGA 59.117 47.619 12.86 0.00 35.28 2.10
4542 5303 1.883275 TCGTGGCACCCATTTTGTTAG 59.117 47.619 12.86 0.00 35.28 2.34
4543 5304 1.609555 GTCGTGGCACCCATTTTGTTA 59.390 47.619 12.86 0.00 35.28 2.41
4544 5305 0.387565 GTCGTGGCACCCATTTTGTT 59.612 50.000 12.86 0.00 35.28 2.83
4545 5306 1.460273 GGTCGTGGCACCCATTTTGT 61.460 55.000 12.86 0.00 35.28 2.83
4546 5307 1.288752 GGTCGTGGCACCCATTTTG 59.711 57.895 12.86 0.00 35.28 2.44
4547 5308 2.265182 CGGTCGTGGCACCCATTTT 61.265 57.895 12.86 0.00 35.28 1.82
4548 5309 2.478335 ATCGGTCGTGGCACCCATTT 62.478 55.000 12.86 0.00 35.28 2.32
4549 5310 2.869503 GATCGGTCGTGGCACCCATT 62.870 60.000 12.86 0.00 35.28 3.16
4550 5311 3.385749 GATCGGTCGTGGCACCCAT 62.386 63.158 12.86 5.03 35.28 4.00
4551 5312 4.077184 GATCGGTCGTGGCACCCA 62.077 66.667 12.86 0.00 31.99 4.51
4561 5322 1.352404 CCACGACTCTCGATCGGTC 59.648 63.158 16.41 13.54 43.74 4.79
4562 5323 2.762234 GCCACGACTCTCGATCGGT 61.762 63.158 16.41 5.10 43.74 4.69
4563 5324 2.024871 GCCACGACTCTCGATCGG 59.975 66.667 16.41 6.26 43.74 4.18
4564 5325 2.107151 ATCGCCACGACTCTCGATCG 62.107 60.000 9.36 9.36 43.74 3.69
4565 5326 0.029567 AATCGCCACGACTCTCGATC 59.970 55.000 0.00 0.00 43.74 3.69
4566 5327 0.248661 CAATCGCCACGACTCTCGAT 60.249 55.000 0.00 0.00 43.74 3.59
4567 5328 1.136774 CAATCGCCACGACTCTCGA 59.863 57.895 0.00 0.00 43.74 4.04
4568 5329 0.732880 AACAATCGCCACGACTCTCG 60.733 55.000 0.00 0.00 46.93 4.04
4569 5330 0.992802 GAACAATCGCCACGACTCTC 59.007 55.000 0.00 0.00 39.18 3.20
4570 5331 0.389948 GGAACAATCGCCACGACTCT 60.390 55.000 0.00 0.00 39.18 3.24
4571 5332 0.669318 TGGAACAATCGCCACGACTC 60.669 55.000 0.00 0.00 39.18 3.36
4572 5333 0.670546 CTGGAACAATCGCCACGACT 60.671 55.000 0.00 0.00 39.18 4.18
4573 5334 0.669318 TCTGGAACAATCGCCACGAC 60.669 55.000 0.00 0.00 39.18 4.34
4574 5335 0.389817 CTCTGGAACAATCGCCACGA 60.390 55.000 0.00 0.00 38.70 4.35
4575 5336 1.361668 CCTCTGGAACAATCGCCACG 61.362 60.000 0.00 0.00 38.70 4.94
4576 5337 0.321653 ACCTCTGGAACAATCGCCAC 60.322 55.000 0.00 0.00 38.70 5.01
4577 5338 0.400213 AACCTCTGGAACAATCGCCA 59.600 50.000 0.00 0.00 38.70 5.69
4578 5339 0.804989 CAACCTCTGGAACAATCGCC 59.195 55.000 0.00 0.00 38.70 5.54
4594 5355 4.373116 TGCTCGGAGGTCGCCAAC 62.373 66.667 7.20 0.00 39.05 3.77
4595 5356 4.069232 CTGCTCGGAGGTCGCCAA 62.069 66.667 7.20 0.00 39.05 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.