Multiple sequence alignment - TraesCS3B01G195600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G195600 chr3B 100.000 5642 0 0 1 5642 222195032 222189391 0.000000e+00 10419.0
1 TraesCS3B01G195600 chr3B 85.904 376 43 9 3592 3963 372189435 372189066 5.300000e-105 392.0
2 TraesCS3B01G195600 chr3B 95.213 188 8 1 1 187 42738420 42738607 4.270000e-76 296.0
3 TraesCS3B01G195600 chr3D 93.051 2806 143 28 1664 4438 150801767 150798983 0.000000e+00 4054.0
4 TraesCS3B01G195600 chr3D 91.604 536 34 3 5007 5542 150798054 150797530 0.000000e+00 730.0
5 TraesCS3B01G195600 chr3D 91.703 458 17 5 1020 1456 150802454 150801997 2.890000e-172 616.0
6 TraesCS3B01G195600 chr3D 88.757 338 24 6 4435 4761 150798844 150798510 8.800000e-108 401.0
7 TraesCS3B01G195600 chr3D 82.775 418 55 13 3593 4000 557766337 557766747 1.930000e-94 357.0
8 TraesCS3B01G195600 chr3D 96.000 150 5 1 4788 4936 150798200 150798051 5.650000e-60 243.0
9 TraesCS3B01G195600 chr3D 93.377 151 2 1 872 1014 150802849 150802699 3.420000e-52 217.0
10 TraesCS3B01G195600 chr3D 85.549 173 16 5 1472 1643 150802015 150801851 7.520000e-39 172.0
11 TraesCS3B01G195600 chr3D 97.500 40 1 0 4667 4706 150798568 150798529 1.010000e-07 69.4
12 TraesCS3B01G195600 chr3D 100.000 33 0 0 4759 4791 150798250 150798218 1.700000e-05 62.1
13 TraesCS3B01G195600 chr3A 92.656 2342 155 12 2201 4533 180810662 180812995 0.000000e+00 3356.0
14 TraesCS3B01G195600 chr3A 87.965 565 53 8 1658 2211 180809548 180810108 0.000000e+00 652.0
15 TraesCS3B01G195600 chr3A 90.796 402 34 3 5141 5542 180864345 180864743 8.320000e-148 534.0
16 TraesCS3B01G195600 chr3A 92.073 328 16 4 4782 5107 180864025 180864344 2.400000e-123 453.0
17 TraesCS3B01G195600 chr3A 84.923 325 27 10 1067 1388 180808954 180809259 5.490000e-80 309.0
18 TraesCS3B01G195600 chr3A 94.211 190 10 1 1 189 165289336 165289525 7.150000e-74 289.0
19 TraesCS3B01G195600 chr3A 93.388 121 6 2 4532 4652 738952300 738952418 1.620000e-40 178.0
20 TraesCS3B01G195600 chr3A 88.043 92 4 1 4662 4746 180812989 180813080 1.000000e-17 102.0
21 TraesCS3B01G195600 chr3A 98.000 50 1 0 4742 4791 180863965 180864014 2.800000e-13 87.9
22 TraesCS3B01G195600 chr7B 92.125 546 40 3 229 772 387536137 387535593 0.000000e+00 767.0
23 TraesCS3B01G195600 chr7B 88.007 542 58 4 230 770 240721489 240722024 7.970000e-178 634.0
24 TraesCS3B01G195600 chr7B 91.870 123 10 0 4533 4655 443639268 443639146 7.520000e-39 172.0
25 TraesCS3B01G195600 chr7B 96.875 64 2 0 5579 5642 319850353 319850290 2.150000e-19 108.0
26 TraesCS3B01G195600 chr7B 96.875 64 2 0 5579 5642 391309049 391309112 2.150000e-19 108.0
27 TraesCS3B01G195600 chr7B 96.875 64 2 0 5579 5642 735188354 735188291 2.150000e-19 108.0
28 TraesCS3B01G195600 chr2B 88.807 545 54 6 232 772 799456722 799457263 0.000000e+00 662.0
29 TraesCS3B01G195600 chr2B 86.462 554 59 14 230 778 728932254 728931712 1.350000e-165 593.0
30 TraesCS3B01G195600 chr2B 93.264 193 12 1 1 192 785909127 785908935 3.330000e-72 283.0
31 TraesCS3B01G195600 chr2B 91.045 134 9 3 4531 4664 80984452 80984322 1.620000e-40 178.0
32 TraesCS3B01G195600 chr2B 94.203 69 4 0 5574 5642 750719198 750719130 7.730000e-19 106.0
33 TraesCS3B01G195600 chr6B 87.545 554 64 4 230 781 675524496 675525046 2.220000e-178 636.0
34 TraesCS3B01G195600 chr6B 87.477 551 62 5 230 777 10013294 10012748 3.710000e-176 628.0
35 TraesCS3B01G195600 chr6B 87.638 542 56 5 232 772 695774352 695773821 2.230000e-173 619.0
36 TraesCS3B01G195600 chr6B 87.073 410 42 9 3592 3999 555552413 555552813 2.400000e-123 453.0
37 TraesCS3B01G195600 chr6B 94.764 191 7 3 1 189 68368002 68368191 1.540000e-75 294.0
38 TraesCS3B01G195600 chr6B 94.681 188 9 1 1 187 277620404 277620591 1.990000e-74 291.0
39 TraesCS3B01G195600 chr6B 98.438 64 1 0 5579 5642 531071774 531071837 4.620000e-21 113.0
40 TraesCS3B01G195600 chr6B 96.970 66 2 0 777 842 435588929 435588864 1.660000e-20 111.0
41 TraesCS3B01G195600 chr1B 88.091 529 53 7 251 778 264417953 264417434 2.230000e-173 619.0
42 TraesCS3B01G195600 chr1B 93.684 190 12 0 1 190 217692314 217692503 9.250000e-73 285.0
43 TraesCS3B01G195600 chr1B 81.065 169 19 7 2069 2233 681552962 681553121 7.680000e-24 122.0
44 TraesCS3B01G195600 chr4A 86.957 529 61 7 230 755 704525237 704525760 6.300000e-164 588.0
45 TraesCS3B01G195600 chr4A 94.149 188 10 1 1 187 84532768 84532955 9.250000e-73 285.0
46 TraesCS3B01G195600 chr4A 96.875 64 2 0 5579 5642 632187202 632187139 2.150000e-19 108.0
47 TraesCS3B01G195600 chr2A 87.685 406 43 7 3601 4001 20570807 20570404 3.080000e-127 466.0
48 TraesCS3B01G195600 chr2A 88.000 125 9 5 3590 3713 1539928 1539809 5.890000e-30 143.0
49 TraesCS3B01G195600 chr2D 86.988 415 46 8 3592 4001 19323415 19323826 1.430000e-125 460.0
50 TraesCS3B01G195600 chr2D 84.541 414 39 12 3591 4002 96290110 96289720 2.470000e-103 387.0
51 TraesCS3B01G195600 chr2D 86.458 96 13 0 1838 1933 643815046 643815141 7.730000e-19 106.0
52 TraesCS3B01G195600 chr5D 86.988 415 40 11 3592 4001 559934566 559934971 6.660000e-124 455.0
53 TraesCS3B01G195600 chr5D 95.652 115 4 1 4535 4649 39715482 39715595 3.470000e-42 183.0
54 TraesCS3B01G195600 chr5D 96.842 95 3 0 1992 2086 398868738 398868644 5.850000e-35 159.0
55 TraesCS3B01G195600 chr5D 80.571 175 34 0 2722 2896 398867981 398867807 9.860000e-28 135.0
56 TraesCS3B01G195600 chr5D 76.316 228 38 11 1145 1358 398821022 398820797 2.150000e-19 108.0
57 TraesCS3B01G195600 chr1A 93.782 193 10 2 1 191 554825226 554825418 7.150000e-74 289.0
58 TraesCS3B01G195600 chr1A 98.387 62 1 0 5579 5640 586672738 586672799 5.980000e-20 110.0
59 TraesCS3B01G195600 chr4B 93.717 191 11 1 1 190 27487030 27486840 9.250000e-73 285.0
60 TraesCS3B01G195600 chr1D 94.215 121 5 2 4535 4655 218004715 218004597 3.470000e-42 183.0
61 TraesCS3B01G195600 chr7A 93.388 121 7 1 4533 4652 19693211 19693331 1.620000e-40 178.0
62 TraesCS3B01G195600 chr7A 93.939 66 4 0 777 842 688790916 688790851 3.600000e-17 100.0
63 TraesCS3B01G195600 chr4D 94.783 115 5 1 4535 4649 228590582 228590695 1.620000e-40 178.0
64 TraesCS3B01G195600 chr5A 91.935 124 8 2 4532 4655 522364983 522364862 7.520000e-39 172.0
65 TraesCS3B01G195600 chr5A 80.288 208 41 0 4150 4357 503927414 503927207 2.100000e-34 158.0
66 TraesCS3B01G195600 chr5A 95.789 95 4 0 1992 2086 503932807 503932713 2.720000e-33 154.0
67 TraesCS3B01G195600 chr5A 78.378 222 42 6 2726 2944 503932068 503931850 7.620000e-29 139.0
68 TraesCS3B01G195600 chr5A 78.241 216 33 12 2736 2944 503928346 503928138 5.930000e-25 126.0
69 TraesCS3B01G195600 chr5A 89.474 95 8 2 1288 1380 503929802 503929708 9.930000e-23 119.0
70 TraesCS3B01G195600 chr5A 76.293 232 35 11 1145 1358 503874892 503874663 7.730000e-19 106.0
71 TraesCS3B01G195600 chr5B 79.452 219 45 0 2735 2953 479035543 479035325 7.570000e-34 156.0
72 TraesCS3B01G195600 chr5B 95.789 95 4 0 1992 2086 479036302 479036208 2.720000e-33 154.0
73 TraesCS3B01G195600 chr5B 94.737 95 5 0 1992 2086 479032135 479032041 1.270000e-31 148.0
74 TraesCS3B01G195600 chr5B 96.923 65 2 0 5578 5642 235804202 235804266 5.980000e-20 110.0
75 TraesCS3B01G195600 chr5B 96.875 64 2 0 5579 5642 89195956 89195893 2.150000e-19 108.0
76 TraesCS3B01G195600 chr5B 88.750 80 9 0 1145 1224 479033434 479033355 1.290000e-16 99.0
77 TraesCS3B01G195600 chr6D 81.548 168 19 6 2069 2233 300987611 300987453 1.650000e-25 128.0
78 TraesCS3B01G195600 chr6D 84.146 82 5 4 2069 2150 300987720 300987647 7.840000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G195600 chr3B 222189391 222195032 5641 True 10419.000000 10419 100.000000 1 5642 1 chr3B.!!$R1 5641
1 TraesCS3B01G195600 chr3D 150797530 150802849 5319 True 729.388889 4054 93.060111 872 5542 9 chr3D.!!$R1 4670
2 TraesCS3B01G195600 chr3A 180808954 180813080 4126 False 1104.750000 3356 88.396750 1067 4746 4 chr3A.!!$F3 3679
3 TraesCS3B01G195600 chr3A 180863965 180864743 778 False 358.300000 534 93.623000 4742 5542 3 chr3A.!!$F4 800
4 TraesCS3B01G195600 chr7B 387535593 387536137 544 True 767.000000 767 92.125000 229 772 1 chr7B.!!$R2 543
5 TraesCS3B01G195600 chr7B 240721489 240722024 535 False 634.000000 634 88.007000 230 770 1 chr7B.!!$F1 540
6 TraesCS3B01G195600 chr2B 799456722 799457263 541 False 662.000000 662 88.807000 232 772 1 chr2B.!!$F1 540
7 TraesCS3B01G195600 chr2B 728931712 728932254 542 True 593.000000 593 86.462000 230 778 1 chr2B.!!$R2 548
8 TraesCS3B01G195600 chr6B 675524496 675525046 550 False 636.000000 636 87.545000 230 781 1 chr6B.!!$F5 551
9 TraesCS3B01G195600 chr6B 10012748 10013294 546 True 628.000000 628 87.477000 230 777 1 chr6B.!!$R1 547
10 TraesCS3B01G195600 chr6B 695773821 695774352 531 True 619.000000 619 87.638000 232 772 1 chr6B.!!$R3 540
11 TraesCS3B01G195600 chr1B 264417434 264417953 519 True 619.000000 619 88.091000 251 778 1 chr1B.!!$R1 527
12 TraesCS3B01G195600 chr4A 704525237 704525760 523 False 588.000000 588 86.957000 230 755 1 chr4A.!!$F2 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 842 0.034089 ACCAATAGCTCCCCTTGCAC 60.034 55.0 0.00 0.00 0.00 4.57 F
836 843 0.034186 CCAATAGCTCCCCTTGCACA 60.034 55.0 0.00 0.00 0.00 4.57 F
838 845 0.394899 AATAGCTCCCCTTGCACAGC 60.395 55.0 0.00 0.00 0.00 4.40 F
1658 1975 0.666913 GGATGAGGCACATGCATGTC 59.333 55.0 29.23 21.63 44.79 3.06 F
3241 4170 0.030705 ATGCTCCTTGGGCTCTAGGA 60.031 55.0 16.36 16.36 41.43 2.94 F
3994 4940 0.179020 CACCCGTGCCCATATGTCAT 60.179 55.0 1.24 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2297 0.108138 AATCAAGGTCGAGCGAAGGG 60.108 55.000 9.28 0.00 0.00 3.95 R
1978 2332 0.170561 GCCTGCAGAGCATTTGTCAG 59.829 55.000 17.39 0.00 38.13 3.51 R
1979 2333 0.537828 TGCCTGCAGAGCATTTGTCA 60.538 50.000 21.35 2.36 38.13 3.58 R
3604 4543 1.379710 CCATTGCCCCCATGTTCGA 60.380 57.895 0.00 0.00 0.00 3.71 R
4623 5715 0.106569 TTGGGCCATGTGCATCCTAG 60.107 55.000 7.26 0.00 43.89 3.02 R
5580 6963 0.386100 CGACGCTAGGATCATCGGTG 60.386 60.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 7.517614 TTTTTAGCACAATATGTCTCACCAA 57.482 32.000 0.00 0.00 0.00 3.67
58 59 7.517614 TTTTAGCACAATATGTCTCACCAAA 57.482 32.000 0.00 0.00 0.00 3.28
59 60 7.701539 TTTAGCACAATATGTCTCACCAAAT 57.298 32.000 0.00 0.00 0.00 2.32
60 61 7.701539 TTAGCACAATATGTCTCACCAAATT 57.298 32.000 0.00 0.00 0.00 1.82
61 62 6.594788 AGCACAATATGTCTCACCAAATTT 57.405 33.333 0.00 0.00 0.00 1.82
62 63 6.996509 AGCACAATATGTCTCACCAAATTTT 58.003 32.000 0.00 0.00 0.00 1.82
63 64 7.444299 AGCACAATATGTCTCACCAAATTTTT 58.556 30.769 0.00 0.00 0.00 1.94
64 65 8.584157 AGCACAATATGTCTCACCAAATTTTTA 58.416 29.630 0.00 0.00 0.00 1.52
65 66 9.202273 GCACAATATGTCTCACCAAATTTTTAA 57.798 29.630 0.00 0.00 0.00 1.52
72 73 8.364129 TGTCTCACCAAATTTTTAAGAATTGC 57.636 30.769 4.84 0.00 30.06 3.56
73 74 8.203485 TGTCTCACCAAATTTTTAAGAATTGCT 58.797 29.630 4.84 0.00 30.06 3.91
74 75 9.691362 GTCTCACCAAATTTTTAAGAATTGCTA 57.309 29.630 4.84 0.00 30.06 3.49
75 76 9.912634 TCTCACCAAATTTTTAAGAATTGCTAG 57.087 29.630 4.84 0.00 30.06 3.42
76 77 9.696917 CTCACCAAATTTTTAAGAATTGCTAGT 57.303 29.630 4.84 0.00 30.06 2.57
91 92 9.061435 AGAATTGCTAGTTATTGAAGATAAGGC 57.939 33.333 0.00 0.00 0.00 4.35
92 93 8.986929 AATTGCTAGTTATTGAAGATAAGGCT 57.013 30.769 0.00 0.00 0.00 4.58
95 96 9.547753 TTGCTAGTTATTGAAGATAAGGCTAAG 57.452 33.333 0.00 0.00 0.00 2.18
96 97 8.924303 TGCTAGTTATTGAAGATAAGGCTAAGA 58.076 33.333 0.00 0.00 0.00 2.10
97 98 9.418045 GCTAGTTATTGAAGATAAGGCTAAGAG 57.582 37.037 0.00 0.00 0.00 2.85
104 105 7.304497 TGAAGATAAGGCTAAGAGATAACCC 57.696 40.000 0.00 0.00 0.00 4.11
105 106 6.844388 TGAAGATAAGGCTAAGAGATAACCCA 59.156 38.462 0.00 0.00 0.00 4.51
106 107 7.514127 TGAAGATAAGGCTAAGAGATAACCCAT 59.486 37.037 0.00 0.00 0.00 4.00
107 108 7.880265 AGATAAGGCTAAGAGATAACCCATT 57.120 36.000 0.00 0.00 0.00 3.16
108 109 7.684529 AGATAAGGCTAAGAGATAACCCATTG 58.315 38.462 0.00 0.00 0.00 2.82
109 110 5.717119 AAGGCTAAGAGATAACCCATTGT 57.283 39.130 0.00 0.00 0.00 2.71
110 111 6.824958 AAGGCTAAGAGATAACCCATTGTA 57.175 37.500 0.00 0.00 0.00 2.41
111 112 6.426646 AGGCTAAGAGATAACCCATTGTAG 57.573 41.667 0.00 0.00 0.00 2.74
112 113 6.143915 AGGCTAAGAGATAACCCATTGTAGA 58.856 40.000 0.00 0.00 0.00 2.59
113 114 6.042208 AGGCTAAGAGATAACCCATTGTAGAC 59.958 42.308 0.00 0.00 0.00 2.59
114 115 6.183360 GGCTAAGAGATAACCCATTGTAGACA 60.183 42.308 0.00 0.00 0.00 3.41
115 116 7.272978 GCTAAGAGATAACCCATTGTAGACAA 58.727 38.462 0.00 0.00 40.51 3.18
116 117 7.769044 GCTAAGAGATAACCCATTGTAGACAAA 59.231 37.037 0.00 0.00 39.55 2.83
117 118 9.838339 CTAAGAGATAACCCATTGTAGACAAAT 57.162 33.333 0.00 0.00 39.55 2.32
119 120 9.533831 AAGAGATAACCCATTGTAGACAAATTT 57.466 29.630 0.00 0.00 39.55 1.82
120 121 9.533831 AGAGATAACCCATTGTAGACAAATTTT 57.466 29.630 0.00 0.00 39.55 1.82
146 147 9.617523 TTTATCATCTCTAAATCACATGCAAGA 57.382 29.630 0.00 0.00 0.00 3.02
147 148 6.915544 TCATCTCTAAATCACATGCAAGAC 57.084 37.500 0.00 0.00 0.00 3.01
148 149 6.647229 TCATCTCTAAATCACATGCAAGACT 58.353 36.000 0.00 0.00 0.00 3.24
149 150 7.108194 TCATCTCTAAATCACATGCAAGACTT 58.892 34.615 0.00 0.00 0.00 3.01
150 151 8.260114 TCATCTCTAAATCACATGCAAGACTTA 58.740 33.333 0.00 0.00 0.00 2.24
151 152 8.886719 CATCTCTAAATCACATGCAAGACTTAA 58.113 33.333 0.00 0.00 0.00 1.85
152 153 8.484641 TCTCTAAATCACATGCAAGACTTAAG 57.515 34.615 0.00 0.00 0.00 1.85
153 154 8.314021 TCTCTAAATCACATGCAAGACTTAAGA 58.686 33.333 10.09 0.00 0.00 2.10
154 155 9.107177 CTCTAAATCACATGCAAGACTTAAGAT 57.893 33.333 10.09 0.00 0.00 2.40
158 159 9.453572 AAATCACATGCAAGACTTAAGATAAGA 57.546 29.630 10.09 0.00 0.00 2.10
159 160 7.834068 TCACATGCAAGACTTAAGATAAGAC 57.166 36.000 10.09 0.00 0.00 3.01
160 161 7.615403 TCACATGCAAGACTTAAGATAAGACT 58.385 34.615 10.09 0.83 0.00 3.24
161 162 8.749354 TCACATGCAAGACTTAAGATAAGACTA 58.251 33.333 10.09 0.00 0.00 2.59
162 163 9.539825 CACATGCAAGACTTAAGATAAGACTAT 57.460 33.333 10.09 0.00 0.00 2.12
163 164 9.757227 ACATGCAAGACTTAAGATAAGACTATC 57.243 33.333 10.09 0.00 35.10 2.08
164 165 9.202273 CATGCAAGACTTAAGATAAGACTATCC 57.798 37.037 10.09 0.00 35.42 2.59
165 166 8.540507 TGCAAGACTTAAGATAAGACTATCCT 57.459 34.615 10.09 0.00 35.42 3.24
166 167 9.642343 TGCAAGACTTAAGATAAGACTATCCTA 57.358 33.333 10.09 0.00 35.42 2.94
177 178 9.386122 AGATAAGACTATCCTATCAACCATTGT 57.614 33.333 0.00 0.00 35.42 2.71
180 181 7.914427 AGACTATCCTATCAACCATTGTACA 57.086 36.000 0.00 0.00 0.00 2.90
181 182 8.497910 AGACTATCCTATCAACCATTGTACAT 57.502 34.615 0.00 0.00 0.00 2.29
182 183 8.370940 AGACTATCCTATCAACCATTGTACATG 58.629 37.037 0.00 0.00 0.00 3.21
183 184 6.936900 ACTATCCTATCAACCATTGTACATGC 59.063 38.462 0.00 0.00 0.00 4.06
184 185 4.460263 TCCTATCAACCATTGTACATGCC 58.540 43.478 0.00 0.00 0.00 4.40
185 186 3.569701 CCTATCAACCATTGTACATGCCC 59.430 47.826 0.00 0.00 0.00 5.36
186 187 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
187 188 4.518278 ATCAACCATTGTACATGCCCTA 57.482 40.909 0.00 0.00 0.00 3.53
188 189 4.308526 TCAACCATTGTACATGCCCTAA 57.691 40.909 0.00 0.00 0.00 2.69
189 190 4.269183 TCAACCATTGTACATGCCCTAAG 58.731 43.478 0.00 0.00 0.00 2.18
190 191 4.018870 TCAACCATTGTACATGCCCTAAGA 60.019 41.667 0.00 0.00 0.00 2.10
191 192 4.796110 ACCATTGTACATGCCCTAAGAT 57.204 40.909 0.00 0.00 0.00 2.40
192 193 5.904984 ACCATTGTACATGCCCTAAGATA 57.095 39.130 0.00 0.00 0.00 1.98
193 194 5.869579 ACCATTGTACATGCCCTAAGATAG 58.130 41.667 0.00 0.00 0.00 2.08
194 195 5.221925 ACCATTGTACATGCCCTAAGATAGG 60.222 44.000 0.00 0.00 45.81 2.57
208 209 7.489239 CCTAAGATAGGGGAAAGAAGATAGG 57.511 44.000 0.00 0.00 42.42 2.57
209 210 6.442244 CCTAAGATAGGGGAAAGAAGATAGGG 59.558 46.154 0.00 0.00 42.42 3.53
210 211 5.705175 AGATAGGGGAAAGAAGATAGGGA 57.295 43.478 0.00 0.00 0.00 4.20
211 212 6.056997 AGATAGGGGAAAGAAGATAGGGAA 57.943 41.667 0.00 0.00 0.00 3.97
212 213 5.847265 AGATAGGGGAAAGAAGATAGGGAAC 59.153 44.000 0.00 0.00 0.00 3.62
213 214 2.772515 AGGGGAAAGAAGATAGGGAACG 59.227 50.000 0.00 0.00 0.00 3.95
214 215 2.158798 GGGGAAAGAAGATAGGGAACGG 60.159 54.545 0.00 0.00 0.00 4.44
215 216 2.158798 GGGAAAGAAGATAGGGAACGGG 60.159 54.545 0.00 0.00 0.00 5.28
216 217 2.770232 GGAAAGAAGATAGGGAACGGGA 59.230 50.000 0.00 0.00 0.00 5.14
217 218 3.181464 GGAAAGAAGATAGGGAACGGGAG 60.181 52.174 0.00 0.00 0.00 4.30
218 219 3.399952 AAGAAGATAGGGAACGGGAGA 57.600 47.619 0.00 0.00 0.00 3.71
219 220 2.952116 AGAAGATAGGGAACGGGAGAG 58.048 52.381 0.00 0.00 0.00 3.20
220 221 2.514582 AGAAGATAGGGAACGGGAGAGA 59.485 50.000 0.00 0.00 0.00 3.10
221 222 3.052793 AGAAGATAGGGAACGGGAGAGAA 60.053 47.826 0.00 0.00 0.00 2.87
222 223 2.952116 AGATAGGGAACGGGAGAGAAG 58.048 52.381 0.00 0.00 0.00 2.85
223 224 2.514582 AGATAGGGAACGGGAGAGAAGA 59.485 50.000 0.00 0.00 0.00 2.87
224 225 2.140839 TAGGGAACGGGAGAGAAGAC 57.859 55.000 0.00 0.00 0.00 3.01
225 226 0.114560 AGGGAACGGGAGAGAAGACA 59.885 55.000 0.00 0.00 0.00 3.41
226 227 0.533032 GGGAACGGGAGAGAAGACAG 59.467 60.000 0.00 0.00 0.00 3.51
227 228 0.533032 GGAACGGGAGAGAAGACAGG 59.467 60.000 0.00 0.00 0.00 4.00
281 284 6.294361 GGGCTCAACTAACCCAAAAATATT 57.706 37.500 0.00 0.00 43.64 1.28
540 545 4.143333 GACCAGCGCGGCTCCTTA 62.143 66.667 16.48 0.00 36.40 2.69
693 700 1.269012 CCATGCCATCCAAACACCTT 58.731 50.000 0.00 0.00 0.00 3.50
778 785 6.817765 TTTAGAGTATCCAAACAAAGCCAG 57.182 37.500 0.00 0.00 33.66 4.85
779 786 4.640771 AGAGTATCCAAACAAAGCCAGA 57.359 40.909 0.00 0.00 33.66 3.86
781 788 5.574188 AGAGTATCCAAACAAAGCCAGAAT 58.426 37.500 0.00 0.00 33.66 2.40
782 789 6.012745 AGAGTATCCAAACAAAGCCAGAATT 58.987 36.000 0.00 0.00 33.66 2.17
783 790 6.029346 AGTATCCAAACAAAGCCAGAATTG 57.971 37.500 0.00 0.00 0.00 2.32
784 791 5.774690 AGTATCCAAACAAAGCCAGAATTGA 59.225 36.000 0.00 0.00 0.00 2.57
785 792 5.549742 ATCCAAACAAAGCCAGAATTGAA 57.450 34.783 0.00 0.00 0.00 2.69
786 793 4.692228 TCCAAACAAAGCCAGAATTGAAC 58.308 39.130 0.00 0.00 0.00 3.18
787 794 4.405358 TCCAAACAAAGCCAGAATTGAACT 59.595 37.500 0.00 0.00 0.00 3.01
788 795 4.508861 CCAAACAAAGCCAGAATTGAACTG 59.491 41.667 0.00 0.00 35.43 3.16
789 796 3.375782 ACAAAGCCAGAATTGAACTGC 57.624 42.857 0.00 0.00 34.47 4.40
790 797 2.694628 ACAAAGCCAGAATTGAACTGCA 59.305 40.909 0.00 0.00 34.47 4.41
791 798 3.054878 CAAAGCCAGAATTGAACTGCAC 58.945 45.455 0.00 0.00 34.47 4.57
792 799 2.283145 AGCCAGAATTGAACTGCACT 57.717 45.000 0.00 0.00 34.47 4.40
793 800 2.590821 AGCCAGAATTGAACTGCACTT 58.409 42.857 0.00 0.00 34.47 3.16
794 801 2.555757 AGCCAGAATTGAACTGCACTTC 59.444 45.455 0.00 0.00 36.67 3.01
795 802 2.294233 GCCAGAATTGAACTGCACTTCA 59.706 45.455 4.84 4.84 38.30 3.02
796 803 3.243501 GCCAGAATTGAACTGCACTTCAA 60.244 43.478 19.51 19.51 42.83 2.69
797 804 4.543692 CCAGAATTGAACTGCACTTCAAG 58.456 43.478 21.05 11.12 42.13 3.02
798 805 4.543692 CAGAATTGAACTGCACTTCAAGG 58.456 43.478 21.05 10.72 42.13 3.61
799 806 4.037208 CAGAATTGAACTGCACTTCAAGGT 59.963 41.667 21.05 14.07 42.13 3.50
800 807 4.646492 AGAATTGAACTGCACTTCAAGGTT 59.354 37.500 21.05 14.09 42.13 3.50
801 808 5.127682 AGAATTGAACTGCACTTCAAGGTTT 59.872 36.000 21.05 13.56 42.13 3.27
802 809 6.321181 AGAATTGAACTGCACTTCAAGGTTTA 59.679 34.615 21.05 3.84 42.13 2.01
803 810 6.655078 ATTGAACTGCACTTCAAGGTTTAT 57.345 33.333 21.05 6.24 42.13 1.40
804 811 6.463995 TTGAACTGCACTTCAAGGTTTATT 57.536 33.333 15.04 0.00 35.63 1.40
805 812 6.072112 TGAACTGCACTTCAAGGTTTATTC 57.928 37.500 6.34 0.00 0.00 1.75
806 813 5.827797 TGAACTGCACTTCAAGGTTTATTCT 59.172 36.000 6.34 0.00 0.00 2.40
807 814 5.695851 ACTGCACTTCAAGGTTTATTCTG 57.304 39.130 0.00 0.00 0.00 3.02
808 815 4.022849 ACTGCACTTCAAGGTTTATTCTGC 60.023 41.667 0.00 0.00 0.00 4.26
809 816 3.888323 TGCACTTCAAGGTTTATTCTGCA 59.112 39.130 0.00 0.00 0.00 4.41
810 817 4.340666 TGCACTTCAAGGTTTATTCTGCAA 59.659 37.500 0.00 0.00 0.00 4.08
811 818 5.163468 TGCACTTCAAGGTTTATTCTGCAAA 60.163 36.000 0.00 0.00 0.00 3.68
812 819 5.752955 GCACTTCAAGGTTTATTCTGCAAAA 59.247 36.000 0.00 0.00 0.00 2.44
813 820 6.292328 GCACTTCAAGGTTTATTCTGCAAAAC 60.292 38.462 3.58 3.58 35.34 2.43
814 821 5.977129 ACTTCAAGGTTTATTCTGCAAAACG 59.023 36.000 5.82 0.00 36.63 3.60
815 822 5.508200 TCAAGGTTTATTCTGCAAAACGT 57.492 34.783 5.82 3.94 36.63 3.99
816 823 6.621316 TCAAGGTTTATTCTGCAAAACGTA 57.379 33.333 7.21 0.00 36.63 3.57
817 824 6.432107 TCAAGGTTTATTCTGCAAAACGTAC 58.568 36.000 7.21 0.00 36.63 3.67
818 825 5.366829 AGGTTTATTCTGCAAAACGTACC 57.633 39.130 5.39 1.81 36.63 3.34
819 826 4.822896 AGGTTTATTCTGCAAAACGTACCA 59.177 37.500 5.39 0.00 36.63 3.25
820 827 5.299782 AGGTTTATTCTGCAAAACGTACCAA 59.700 36.000 5.39 0.00 36.63 3.67
821 828 6.015772 AGGTTTATTCTGCAAAACGTACCAAT 60.016 34.615 5.39 0.00 36.63 3.16
822 829 7.175293 AGGTTTATTCTGCAAAACGTACCAATA 59.825 33.333 5.39 0.00 36.63 1.90
823 830 7.483691 GGTTTATTCTGCAAAACGTACCAATAG 59.516 37.037 5.82 0.00 36.63 1.73
824 831 4.413495 TTCTGCAAAACGTACCAATAGC 57.587 40.909 0.00 0.00 0.00 2.97
825 832 3.670625 TCTGCAAAACGTACCAATAGCT 58.329 40.909 0.00 0.00 0.00 3.32
826 833 3.682858 TCTGCAAAACGTACCAATAGCTC 59.317 43.478 0.00 0.00 0.00 4.09
827 834 2.745281 TGCAAAACGTACCAATAGCTCC 59.255 45.455 0.00 0.00 0.00 4.70
828 835 2.096980 GCAAAACGTACCAATAGCTCCC 59.903 50.000 0.00 0.00 0.00 4.30
829 836 2.681344 CAAAACGTACCAATAGCTCCCC 59.319 50.000 0.00 0.00 0.00 4.81
830 837 1.875488 AACGTACCAATAGCTCCCCT 58.125 50.000 0.00 0.00 0.00 4.79
831 838 1.875488 ACGTACCAATAGCTCCCCTT 58.125 50.000 0.00 0.00 0.00 3.95
832 839 1.485066 ACGTACCAATAGCTCCCCTTG 59.515 52.381 0.00 0.00 0.00 3.61
833 840 1.810412 CGTACCAATAGCTCCCCTTGC 60.810 57.143 0.00 0.00 0.00 4.01
834 841 1.211949 GTACCAATAGCTCCCCTTGCA 59.788 52.381 0.00 0.00 0.00 4.08
835 842 0.034089 ACCAATAGCTCCCCTTGCAC 60.034 55.000 0.00 0.00 0.00 4.57
836 843 0.034186 CCAATAGCTCCCCTTGCACA 60.034 55.000 0.00 0.00 0.00 4.57
837 844 1.386533 CAATAGCTCCCCTTGCACAG 58.613 55.000 0.00 0.00 0.00 3.66
838 845 0.394899 AATAGCTCCCCTTGCACAGC 60.395 55.000 0.00 0.00 0.00 4.40
839 846 1.565390 ATAGCTCCCCTTGCACAGCA 61.565 55.000 0.00 0.00 36.47 4.41
840 847 1.565390 TAGCTCCCCTTGCACAGCAT 61.565 55.000 0.00 0.00 38.76 3.79
841 848 2.413142 GCTCCCCTTGCACAGCATC 61.413 63.158 0.00 0.00 38.76 3.91
842 849 2.046023 TCCCCTTGCACAGCATCG 60.046 61.111 0.00 0.00 38.76 3.84
843 850 3.136123 CCCCTTGCACAGCATCGG 61.136 66.667 0.00 0.00 38.76 4.18
844 851 3.136123 CCCTTGCACAGCATCGGG 61.136 66.667 11.01 11.01 41.04 5.14
845 852 2.360350 CCTTGCACAGCATCGGGT 60.360 61.111 0.00 0.00 38.76 5.28
864 871 3.831729 GCACCGTGCACATGATATG 57.168 52.632 18.79 6.17 44.26 1.78
865 872 1.016627 GCACCGTGCACATGATATGT 58.983 50.000 18.79 0.00 44.26 2.29
866 873 1.401552 GCACCGTGCACATGATATGTT 59.598 47.619 18.79 0.00 44.26 2.71
867 874 2.539547 GCACCGTGCACATGATATGTTC 60.540 50.000 18.79 0.00 44.26 3.18
868 875 2.938451 CACCGTGCACATGATATGTTCT 59.062 45.455 18.64 0.00 42.70 3.01
869 876 3.001634 CACCGTGCACATGATATGTTCTC 59.998 47.826 18.64 0.00 42.70 2.87
870 877 2.219445 CCGTGCACATGATATGTTCTCG 59.781 50.000 18.64 8.36 42.70 4.04
941 948 2.620115 TCAGCAAGCTTGAAGACTTTGG 59.380 45.455 30.39 6.04 0.00 3.28
1016 1031 3.165606 GACTGGGATCACAGGCTTG 57.834 57.895 28.20 4.69 43.32 4.01
1018 1033 1.136329 ACTGGGATCACAGGCTTGGT 61.136 55.000 28.20 4.60 42.75 3.67
1074 1328 2.740440 TGCCGTGTGCCGTGTATG 60.740 61.111 0.00 0.00 40.16 2.39
1366 1631 5.868454 TCACTCATCAAGGTCAATTCAGAA 58.132 37.500 0.00 0.00 0.00 3.02
1370 1635 6.536582 ACTCATCAAGGTCAATTCAGAATACG 59.463 38.462 0.00 0.00 0.00 3.06
1408 1689 9.956720 ATATATTGTAATTCTTTTCAGCACTGC 57.043 29.630 0.00 0.00 0.00 4.40
1422 1703 1.863454 GCACTGCTCATCCATAAGACG 59.137 52.381 0.00 0.00 0.00 4.18
1433 1714 4.345859 TCCATAAGACGTTTCAACACCT 57.654 40.909 0.00 0.00 0.00 4.00
1448 1729 6.012658 TCAACACCTGCAAAACATATCTTC 57.987 37.500 0.00 0.00 0.00 2.87
1503 1784 9.897744 TCTTCTTAATTTCTGTAAACTGCAATG 57.102 29.630 0.00 0.00 0.00 2.82
1504 1785 9.683069 CTTCTTAATTTCTGTAAACTGCAATGT 57.317 29.630 0.00 0.00 0.00 2.71
1508 1789 9.891828 TTAATTTCTGTAAACTGCAATGTACTG 57.108 29.630 0.00 0.00 0.00 2.74
1509 1790 7.744087 ATTTCTGTAAACTGCAATGTACTGA 57.256 32.000 1.39 1.39 0.00 3.41
1510 1791 7.744087 TTTCTGTAAACTGCAATGTACTGAT 57.256 32.000 5.99 0.00 0.00 2.90
1511 1792 6.726258 TCTGTAAACTGCAATGTACTGATG 57.274 37.500 1.39 0.00 0.00 3.07
1512 1793 6.463360 TCTGTAAACTGCAATGTACTGATGA 58.537 36.000 1.39 0.00 0.00 2.92
1513 1794 6.934083 TCTGTAAACTGCAATGTACTGATGAA 59.066 34.615 1.39 0.00 0.00 2.57
1514 1795 7.118245 TCTGTAAACTGCAATGTACTGATGAAG 59.882 37.037 1.39 0.00 0.00 3.02
1537 1818 5.104610 AGTGATGATGACAGGTTATTCTGCT 60.105 40.000 0.00 0.00 38.26 4.24
1579 1860 2.064762 GCAGCGGATCAGTATCATCAC 58.935 52.381 0.00 0.00 33.41 3.06
1585 1866 4.920340 GCGGATCAGTATCATCACTACAAG 59.080 45.833 0.00 0.00 33.41 3.16
1588 1869 6.451393 GGATCAGTATCATCACTACAAGGTC 58.549 44.000 0.00 0.00 33.41 3.85
1594 1875 4.257267 TCATCACTACAAGGTCAGTGTG 57.743 45.455 2.02 0.00 42.28 3.82
1597 1878 2.628178 TCACTACAAGGTCAGTGTGGAG 59.372 50.000 2.02 0.00 42.28 3.86
1610 1891 2.037772 AGTGTGGAGAACTAGCACCAAG 59.962 50.000 0.00 0.00 34.11 3.61
1614 1895 2.565834 TGGAGAACTAGCACCAAGTACC 59.434 50.000 0.00 0.00 0.00 3.34
1629 1910 3.983044 AGTACCCTGCTTACAAAGGAG 57.017 47.619 1.56 1.56 45.48 3.69
1658 1975 0.666913 GGATGAGGCACATGCATGTC 59.333 55.000 29.23 21.63 44.79 3.06
1705 2049 6.064060 TCCCATTTCACATTAGGATGATGTC 58.936 40.000 0.00 0.00 35.64 3.06
1795 2139 4.142643 GGTACCTAGCACGCATAGATAGAC 60.143 50.000 4.06 0.00 0.00 2.59
1804 2148 5.408909 GCACGCATAGATAGACTAGTCAGTA 59.591 44.000 24.44 9.78 34.21 2.74
1807 2151 6.990939 ACGCATAGATAGACTAGTCAGTACAA 59.009 38.462 24.44 6.04 34.21 2.41
1885 2236 3.844211 TGAAGGGCTTGGAGTACTACAAT 59.156 43.478 20.86 5.77 32.11 2.71
1891 2242 6.670902 AGGGCTTGGAGTACTACAATAACTTA 59.329 38.462 20.86 0.00 32.11 2.24
1894 2245 9.392259 GGCTTGGAGTACTACAATAACTTAATT 57.608 33.333 20.86 0.00 32.11 1.40
1908 2259 9.265938 CAATAACTTAATTGATGAACTGACACG 57.734 33.333 0.00 0.00 38.84 4.49
1919 2270 2.264005 ACTGACACGGCATGGTAAAA 57.736 45.000 0.00 0.00 0.00 1.52
1920 2271 1.877443 ACTGACACGGCATGGTAAAAC 59.123 47.619 0.00 0.00 0.00 2.43
1921 2272 2.151202 CTGACACGGCATGGTAAAACT 58.849 47.619 0.00 0.00 0.00 2.66
1923 2274 1.127951 GACACGGCATGGTAAAACTCG 59.872 52.381 0.00 0.00 0.00 4.18
1924 2275 1.153353 CACGGCATGGTAAAACTCGT 58.847 50.000 0.00 0.00 0.00 4.18
1937 2288 6.183360 TGGTAAAACTCGTTTTCTCTACCTGA 60.183 38.462 18.40 4.72 41.39 3.86
1943 2297 6.388278 ACTCGTTTTCTCTACCTGAACATAC 58.612 40.000 0.00 0.00 0.00 2.39
1948 2302 5.934402 TTCTCTACCTGAACATACCCTTC 57.066 43.478 0.00 0.00 0.00 3.46
1955 2309 1.135199 TGAACATACCCTTCGCTCGAC 60.135 52.381 0.00 0.00 0.00 4.20
1964 2318 2.224066 CCCTTCGCTCGACCTTGATTAT 60.224 50.000 0.00 0.00 0.00 1.28
1965 2319 3.458189 CCTTCGCTCGACCTTGATTATT 58.542 45.455 0.00 0.00 0.00 1.40
1966 2320 4.500887 CCCTTCGCTCGACCTTGATTATTA 60.501 45.833 0.00 0.00 0.00 0.98
1968 2322 5.050972 CCTTCGCTCGACCTTGATTATTAAC 60.051 44.000 0.00 0.00 0.00 2.01
1971 2325 4.209288 CGCTCGACCTTGATTATTAACCAG 59.791 45.833 0.00 0.00 0.00 4.00
1972 2326 4.024809 GCTCGACCTTGATTATTAACCAGC 60.025 45.833 0.00 0.00 0.00 4.85
1973 2327 5.092554 TCGACCTTGATTATTAACCAGCA 57.907 39.130 0.00 0.00 0.00 4.41
1974 2328 4.873827 TCGACCTTGATTATTAACCAGCAC 59.126 41.667 0.00 0.00 0.00 4.40
1975 2329 4.876107 CGACCTTGATTATTAACCAGCACT 59.124 41.667 0.00 0.00 0.00 4.40
1976 2330 5.220662 CGACCTTGATTATTAACCAGCACTG 60.221 44.000 0.00 0.00 0.00 3.66
1977 2331 5.570320 ACCTTGATTATTAACCAGCACTGT 58.430 37.500 0.00 0.00 0.00 3.55
1978 2332 5.648092 ACCTTGATTATTAACCAGCACTGTC 59.352 40.000 0.00 0.00 0.00 3.51
1979 2333 5.882557 CCTTGATTATTAACCAGCACTGTCT 59.117 40.000 0.00 0.00 0.00 3.41
1980 2334 6.183360 CCTTGATTATTAACCAGCACTGTCTG 60.183 42.308 0.00 1.74 0.00 3.51
1981 2335 6.048732 TGATTATTAACCAGCACTGTCTGA 57.951 37.500 8.27 0.00 36.19 3.27
1982 2336 5.874810 TGATTATTAACCAGCACTGTCTGAC 59.125 40.000 0.00 0.00 36.19 3.51
1983 2337 3.769739 ATTAACCAGCACTGTCTGACA 57.230 42.857 10.50 10.50 36.19 3.58
1984 2338 3.552132 TTAACCAGCACTGTCTGACAA 57.448 42.857 12.16 0.00 36.19 3.18
2099 2453 6.482641 CCAGATTCATGTAACTCCAGAATGAG 59.517 42.308 0.00 0.00 39.69 2.90
2100 2454 6.018098 CAGATTCATGTAACTCCAGAATGAGC 60.018 42.308 0.00 0.00 39.69 4.26
2104 2458 5.587443 TCATGTAACTCCAGAATGAGCAATG 59.413 40.000 0.00 0.00 39.69 2.82
2117 2472 5.831702 ATGAGCAATGAAGGTTCAGAATC 57.168 39.130 0.00 0.00 41.08 2.52
2125 2480 8.465201 GCAATGAAGGTTCAGAATCTTTTAGAT 58.535 33.333 10.15 0.00 41.08 1.98
2126 2481 9.784680 CAATGAAGGTTCAGAATCTTTTAGATG 57.215 33.333 10.15 2.91 41.08 2.90
2142 2497 9.436957 TCTTTTAGATGCTCTTCGTTCTTAATT 57.563 29.630 0.00 0.00 0.00 1.40
2151 2506 6.032880 GCTCTTCGTTCTTAATTTGAATGTGC 59.967 38.462 10.73 8.62 33.53 4.57
2162 2517 3.786516 TTGAATGTGCTGCCATATGTG 57.213 42.857 1.24 0.00 0.00 3.21
2322 3241 3.071874 TCTCATCCTTTCGGCACAAAT 57.928 42.857 0.00 0.00 0.00 2.32
2328 3247 3.482436 TCCTTTCGGCACAAATTGTACT 58.518 40.909 0.00 0.00 0.00 2.73
2331 3250 2.264005 TCGGCACAAATTGTACTGGT 57.736 45.000 5.43 0.00 0.00 4.00
2370 3289 2.093973 GCCGTATATAGCTGCTCACCAT 60.094 50.000 4.91 0.00 0.00 3.55
2376 3295 1.117994 TAGCTGCTCACCATCTCCTG 58.882 55.000 4.91 0.00 0.00 3.86
2379 3298 0.252479 CTGCTCACCATCTCCTGCTT 59.748 55.000 0.00 0.00 0.00 3.91
2410 3329 1.338337 CGGCAGTGTCCCTGTATAGAG 59.662 57.143 0.00 0.00 43.55 2.43
2431 3350 5.127845 AGAGACAAGTACCAGGTATGTCATG 59.872 44.000 25.64 11.12 42.12 3.07
2436 3355 2.698855 ACCAGGTATGTCATGTCAGC 57.301 50.000 0.00 0.00 0.00 4.26
2447 3366 3.118629 TGTCATGTCAGCATCTTCCCTAC 60.119 47.826 0.00 0.00 31.99 3.18
2448 3367 3.106827 TCATGTCAGCATCTTCCCTACA 58.893 45.455 0.00 0.00 31.99 2.74
2449 3368 3.133542 TCATGTCAGCATCTTCCCTACAG 59.866 47.826 0.00 0.00 31.99 2.74
2468 3388 3.245797 CAGATGACAGTAGTTGACACCG 58.754 50.000 0.00 0.00 34.41 4.94
2512 3440 2.223433 GCAATGCTCATCTGTAGGCAAC 60.223 50.000 0.00 0.00 38.21 4.17
2745 3674 2.919856 AGCTCGTGCCCTCTGTGT 60.920 61.111 5.73 0.00 40.80 3.72
2747 3676 1.446272 GCTCGTGCCCTCTGTGTAC 60.446 63.158 0.00 0.00 0.00 2.90
2855 3784 0.244178 AGTCGAAGAAACTCTCCGGC 59.756 55.000 0.00 0.00 39.69 6.13
2897 3826 2.335316 ACCACTACGCTGTTTTTCCA 57.665 45.000 0.00 0.00 0.00 3.53
2901 3830 1.003223 ACTACGCTGTTTTTCCAACGC 60.003 47.619 0.00 0.00 0.00 4.84
2951 3880 0.106619 AGAGGGACTACTTCGCCGAT 60.107 55.000 0.00 0.00 41.55 4.18
3044 3973 6.234920 TCAGCCTTACTTATACTGTGCAAAA 58.765 36.000 0.00 0.00 0.00 2.44
3046 3975 6.001460 AGCCTTACTTATACTGTGCAAAACA 58.999 36.000 0.00 0.00 37.22 2.83
3049 3978 7.812669 GCCTTACTTATACTGTGCAAAACATTT 59.187 33.333 0.00 0.00 38.39 2.32
3129 4058 2.747989 CTCTTCAGCAATCACAGCACAT 59.252 45.455 0.00 0.00 0.00 3.21
3241 4170 0.030705 ATGCTCCTTGGGCTCTAGGA 60.031 55.000 16.36 16.36 41.43 2.94
3312 4241 5.483231 TGATCCATGAAAATGGTAGGCAAAA 59.517 36.000 4.73 0.00 42.28 2.44
3374 4303 1.406069 GCTTTCTGGAGATGAGCCGAA 60.406 52.381 0.00 0.00 31.48 4.30
3377 4306 1.561643 TCTGGAGATGAGCCGAAACT 58.438 50.000 0.00 0.00 0.00 2.66
3378 4307 1.205655 TCTGGAGATGAGCCGAAACTG 59.794 52.381 0.00 0.00 0.00 3.16
3396 4332 3.820557 ACTGTGAATACTTGCCAGTGTT 58.179 40.909 0.00 0.00 37.08 3.32
3604 4543 7.230712 AGGTGAGTTCATCTAAAACGGATTTTT 59.769 33.333 0.00 0.00 38.91 1.94
3605 4544 7.537649 GGTGAGTTCATCTAAAACGGATTTTTC 59.462 37.037 0.00 0.00 38.91 2.29
3717 4656 4.201910 ACGCATGCATGTGGTCTAAAATAC 60.202 41.667 36.14 12.46 42.35 1.89
3718 4657 4.035558 CGCATGCATGTGGTCTAAAATACT 59.964 41.667 28.76 0.00 34.78 2.12
3787 4732 3.462982 AGACAAAATTTCGGCCCAAAAC 58.537 40.909 0.00 0.00 0.00 2.43
3901 4846 6.020599 CGATATACTGCATTGCTATACGTTCC 60.021 42.308 10.49 0.00 0.00 3.62
3971 4917 5.757886 TGAACTTCAAAATAAAGTGCTCCG 58.242 37.500 0.00 0.00 37.06 4.63
3994 4940 0.179020 CACCCGTGCCCATATGTCAT 60.179 55.000 1.24 0.00 0.00 3.06
4010 4956 7.201723 CCATATGTCATTTTTCGGAGTTCATCA 60.202 37.037 1.24 0.00 0.00 3.07
4062 5008 7.990886 CCATACCCAAGTAGTAAAAGAATAGCA 59.009 37.037 0.00 0.00 0.00 3.49
4156 5102 4.865905 TCTGGATTAGCTTCTGAGAGAGT 58.134 43.478 0.00 0.00 0.00 3.24
4203 5149 4.832266 TCAAATGTGCAGGGATACTTTGTT 59.168 37.500 0.00 0.00 0.00 2.83
4301 5247 1.379576 CGGGGAGGAAGAGGTACGT 60.380 63.158 0.00 0.00 0.00 3.57
4314 5260 2.815703 AGGTACGTGAGGAACTCTGCG 61.816 57.143 0.00 10.44 37.50 5.18
4341 5287 4.388499 TCCGGCTTCCTCAACGGC 62.388 66.667 0.00 0.00 45.58 5.68
4422 5368 0.533085 TTCGTTGGCAATGACACGGA 60.533 50.000 21.19 3.36 0.00 4.69
4491 5579 5.299949 TCATAGCATACAATACACCAGCAG 58.700 41.667 0.00 0.00 0.00 4.24
4494 5582 2.642427 CATACAATACACCAGCAGCCA 58.358 47.619 0.00 0.00 0.00 4.75
4508 5596 1.915141 CAGCCAGGGTCAAAAGTGAT 58.085 50.000 0.00 0.00 35.80 3.06
4524 5616 2.439135 AGTGATGGCCTGTGTATGCATA 59.561 45.455 3.32 1.16 0.00 3.14
4529 5621 3.425659 TGGCCTGTGTATGCATACAAAA 58.574 40.909 34.93 25.60 44.11 2.44
4610 5702 8.882415 ATACAAAGTATTATGAGTAACACCCG 57.118 34.615 0.00 0.00 0.00 5.28
4612 5704 5.945144 AAGTATTATGAGTAACACCCGGT 57.055 39.130 0.00 0.00 0.00 5.28
4615 5707 5.659971 AGTATTATGAGTAACACCCGGTCTT 59.340 40.000 0.00 0.00 0.00 3.01
4623 5715 1.530323 ACACCCGGTCTTTGCATAAC 58.470 50.000 0.00 0.00 0.00 1.89
4626 5718 2.936498 CACCCGGTCTTTGCATAACTAG 59.064 50.000 0.00 0.00 0.00 2.57
4627 5719 2.093128 ACCCGGTCTTTGCATAACTAGG 60.093 50.000 0.00 0.00 0.00 3.02
4640 5732 0.106519 AACTAGGATGCACATGGCCC 60.107 55.000 0.00 0.00 43.89 5.80
4652 5744 3.738899 GCACATGGCCCAATATGAAAGTG 60.739 47.826 7.74 0.00 36.11 3.16
4656 5748 2.102578 GGCCCAATATGAAAGTGTGCT 58.897 47.619 0.00 0.00 0.00 4.40
4657 5749 2.099756 GGCCCAATATGAAAGTGTGCTC 59.900 50.000 0.00 0.00 0.00 4.26
4663 5755 4.764679 ATATGAAAGTGTGCTCGCAAAA 57.235 36.364 1.75 0.00 0.00 2.44
4791 6152 2.553904 CCAGGAGTTGAACAGCCTCATT 60.554 50.000 6.76 0.00 0.00 2.57
4937 6320 2.740452 GCCCTAAAACGTAGGATCTCG 58.260 52.381 4.34 0.00 36.85 4.04
4957 6340 9.643652 GATCTCGATTAGACATTTGAACATTTC 57.356 33.333 0.00 0.00 36.93 2.17
4958 6341 7.675478 TCTCGATTAGACATTTGAACATTTCG 58.325 34.615 0.00 0.00 0.00 3.46
5145 6528 2.095364 ACTAGTACAACACTCGGCGAAG 60.095 50.000 12.13 9.37 38.80 3.79
5150 6533 0.878523 CAACACTCGGCGAAGGACAA 60.879 55.000 12.13 0.00 0.00 3.18
5161 6544 3.306019 GGCGAAGGACAATTCAACCAAAT 60.306 43.478 0.00 0.00 0.00 2.32
5220 6603 0.409484 AAGTTCTGGGTGGGAATGGG 59.591 55.000 0.00 0.00 0.00 4.00
5236 6619 2.455674 TGGGAAATCAGTGTGACGAG 57.544 50.000 0.00 0.00 0.00 4.18
5238 6621 1.002087 GGGAAATCAGTGTGACGAGGT 59.998 52.381 0.00 0.00 0.00 3.85
5241 6624 0.321671 AATCAGTGTGACGAGGTGGG 59.678 55.000 0.00 0.00 0.00 4.61
5267 6650 4.646945 TCAACTTGTTTTATGCTTCCACCA 59.353 37.500 0.00 0.00 0.00 4.17
5268 6651 5.304101 TCAACTTGTTTTATGCTTCCACCAT 59.696 36.000 0.00 0.00 0.00 3.55
5284 6667 1.516386 CATCGTCTCGGTGGGAACG 60.516 63.158 0.00 0.00 34.00 3.95
5355 6738 3.181436 CCCAAGGATATTGCTCCACTCAT 60.181 47.826 0.00 0.00 37.81 2.90
5381 6764 5.705609 TTTAGGCATCCTTGAGAACAAAC 57.294 39.130 0.00 0.00 35.49 2.93
5542 6925 1.076024 AGGATGGCATTGTGTGGAAGT 59.924 47.619 0.00 0.00 0.00 3.01
5543 6926 1.203052 GGATGGCATTGTGTGGAAGTG 59.797 52.381 0.00 0.00 0.00 3.16
5544 6927 1.888512 GATGGCATTGTGTGGAAGTGT 59.111 47.619 0.00 0.00 0.00 3.55
5545 6928 1.774110 TGGCATTGTGTGGAAGTGTT 58.226 45.000 0.00 0.00 0.00 3.32
5546 6929 1.408340 TGGCATTGTGTGGAAGTGTTG 59.592 47.619 0.00 0.00 0.00 3.33
5547 6930 1.269726 GGCATTGTGTGGAAGTGTTGG 60.270 52.381 0.00 0.00 0.00 3.77
5548 6931 1.269726 GCATTGTGTGGAAGTGTTGGG 60.270 52.381 0.00 0.00 0.00 4.12
5549 6932 1.340889 CATTGTGTGGAAGTGTTGGGG 59.659 52.381 0.00 0.00 0.00 4.96
5550 6933 0.626382 TTGTGTGGAAGTGTTGGGGA 59.374 50.000 0.00 0.00 0.00 4.81
5551 6934 0.626382 TGTGTGGAAGTGTTGGGGAA 59.374 50.000 0.00 0.00 0.00 3.97
5552 6935 1.029681 GTGTGGAAGTGTTGGGGAAC 58.970 55.000 0.00 0.00 0.00 3.62
5553 6936 0.626382 TGTGGAAGTGTTGGGGAACA 59.374 50.000 0.00 0.00 0.00 3.18
5554 6937 1.216678 TGTGGAAGTGTTGGGGAACAT 59.783 47.619 0.00 0.00 34.86 2.71
5555 6938 2.443632 TGTGGAAGTGTTGGGGAACATA 59.556 45.455 0.00 0.00 34.86 2.29
5556 6939 3.081804 GTGGAAGTGTTGGGGAACATAG 58.918 50.000 0.00 0.00 34.86 2.23
5557 6940 2.714250 TGGAAGTGTTGGGGAACATAGT 59.286 45.455 0.00 0.00 34.86 2.12
5558 6941 3.911260 TGGAAGTGTTGGGGAACATAGTA 59.089 43.478 0.00 0.00 34.86 1.82
5559 6942 4.019681 TGGAAGTGTTGGGGAACATAGTAG 60.020 45.833 0.00 0.00 34.86 2.57
5560 6943 4.514401 GAAGTGTTGGGGAACATAGTAGG 58.486 47.826 0.00 0.00 34.86 3.18
5561 6944 3.798515 AGTGTTGGGGAACATAGTAGGA 58.201 45.455 0.00 0.00 34.86 2.94
5562 6945 4.172807 AGTGTTGGGGAACATAGTAGGAA 58.827 43.478 0.00 0.00 34.86 3.36
5563 6946 4.600111 AGTGTTGGGGAACATAGTAGGAAA 59.400 41.667 0.00 0.00 34.86 3.13
5564 6947 5.073965 AGTGTTGGGGAACATAGTAGGAAAA 59.926 40.000 0.00 0.00 34.86 2.29
5565 6948 5.771165 GTGTTGGGGAACATAGTAGGAAAAA 59.229 40.000 0.00 0.00 34.86 1.94
5587 6970 4.536364 AAAATTCTACGCATCACCGATG 57.464 40.909 0.00 0.00 42.37 3.84
5588 6971 3.452755 AATTCTACGCATCACCGATGA 57.547 42.857 8.14 0.00 42.09 2.92
5590 6973 2.706555 TCTACGCATCACCGATGATC 57.293 50.000 8.14 0.00 44.13 2.92
5591 6974 1.269723 TCTACGCATCACCGATGATCC 59.730 52.381 8.14 0.00 44.13 3.36
5592 6975 1.270826 CTACGCATCACCGATGATCCT 59.729 52.381 8.14 0.00 44.13 3.24
5593 6976 1.328279 ACGCATCACCGATGATCCTA 58.672 50.000 8.14 0.00 44.13 2.94
5594 6977 1.270826 ACGCATCACCGATGATCCTAG 59.729 52.381 8.14 0.00 44.13 3.02
5595 6978 1.719600 GCATCACCGATGATCCTAGC 58.280 55.000 8.14 0.00 44.13 3.42
5596 6979 1.988063 CATCACCGATGATCCTAGCG 58.012 55.000 0.00 0.00 44.13 4.26
5597 6980 1.270826 CATCACCGATGATCCTAGCGT 59.729 52.381 0.00 0.00 44.13 5.07
5598 6981 0.952280 TCACCGATGATCCTAGCGTC 59.048 55.000 0.00 0.00 0.00 5.19
5599 6982 0.386100 CACCGATGATCCTAGCGTCG 60.386 60.000 0.00 0.00 42.67 5.12
5600 6983 0.534427 ACCGATGATCCTAGCGTCGA 60.534 55.000 8.24 0.00 45.05 4.20
5601 6984 0.591659 CCGATGATCCTAGCGTCGAA 59.408 55.000 8.24 0.00 45.05 3.71
5602 6985 1.663445 CCGATGATCCTAGCGTCGAAC 60.663 57.143 8.24 0.00 45.05 3.95
5603 6986 1.002792 CGATGATCCTAGCGTCGAACA 60.003 52.381 0.00 0.00 45.05 3.18
5604 6987 2.656085 GATGATCCTAGCGTCGAACAG 58.344 52.381 0.00 0.00 0.00 3.16
5605 6988 1.746470 TGATCCTAGCGTCGAACAGA 58.254 50.000 0.00 0.00 0.00 3.41
5606 6989 1.400846 TGATCCTAGCGTCGAACAGAC 59.599 52.381 0.00 0.00 46.16 3.51
5615 6998 1.954528 TCGAACAGACGACACCTCC 59.045 57.895 0.00 0.00 37.37 4.30
5616 6999 1.442184 CGAACAGACGACACCTCCG 60.442 63.158 0.00 0.00 35.09 4.63
5617 7000 1.733399 GAACAGACGACACCTCCGC 60.733 63.158 0.00 0.00 0.00 5.54
5618 7001 3.553437 AACAGACGACACCTCCGCG 62.553 63.158 0.00 0.00 0.00 6.46
5619 7002 4.039357 CAGACGACACCTCCGCGT 62.039 66.667 4.92 0.00 41.45 6.01
5620 7003 3.292936 AGACGACACCTCCGCGTT 61.293 61.111 4.92 0.00 38.51 4.84
5621 7004 2.804090 GACGACACCTCCGCGTTC 60.804 66.667 4.92 0.00 38.51 3.95
5622 7005 3.547249 GACGACACCTCCGCGTTCA 62.547 63.158 4.92 0.00 38.51 3.18
5623 7006 2.355363 CGACACCTCCGCGTTCAA 60.355 61.111 4.92 0.00 0.00 2.69
5624 7007 2.654912 CGACACCTCCGCGTTCAAC 61.655 63.158 4.92 0.00 0.00 3.18
5625 7008 1.593209 GACACCTCCGCGTTCAACA 60.593 57.895 4.92 0.00 0.00 3.33
5626 7009 1.828331 GACACCTCCGCGTTCAACAC 61.828 60.000 4.92 0.00 0.00 3.32
5627 7010 1.885388 CACCTCCGCGTTCAACACA 60.885 57.895 4.92 0.00 0.00 3.72
5628 7011 1.885850 ACCTCCGCGTTCAACACAC 60.886 57.895 4.92 0.00 0.00 3.82
5629 7012 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
5630 7013 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
5631 7014 0.935831 CTCCGCGTTCAACACACGTA 60.936 55.000 4.92 0.00 39.92 3.57
5632 7015 1.199859 CCGCGTTCAACACACGTAC 59.800 57.895 4.92 0.00 39.92 3.67
5633 7016 1.155158 CGCGTTCAACACACGTACG 60.155 57.895 15.01 15.01 39.92 3.67
5634 7017 1.199859 GCGTTCAACACACGTACGG 59.800 57.895 21.06 11.05 39.92 4.02
5635 7018 1.481819 GCGTTCAACACACGTACGGT 61.482 55.000 21.06 11.73 39.92 4.83
5636 7019 0.922717 CGTTCAACACACGTACGGTT 59.077 50.000 21.06 11.24 32.80 4.44
5637 7020 1.331334 CGTTCAACACACGTACGGTTG 60.331 52.381 22.19 22.19 42.39 3.77
5638 7021 1.004715 GTTCAACACACGTACGGTTGG 60.005 52.381 25.39 13.85 41.59 3.77
5639 7022 0.530211 TCAACACACGTACGGTTGGG 60.530 55.000 25.39 17.76 41.59 4.12
5640 7023 1.227615 AACACACGTACGGTTGGGG 60.228 57.895 21.06 9.56 0.00 4.96
5641 7024 1.684386 AACACACGTACGGTTGGGGA 61.684 55.000 21.06 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.517614 TTGGTGAGACATATTGTGCTAAAAA 57.482 32.000 0.00 0.00 0.00 1.94
34 35 7.517614 TTTGGTGAGACATATTGTGCTAAAA 57.482 32.000 0.00 0.00 0.00 1.52
35 36 7.701539 ATTTGGTGAGACATATTGTGCTAAA 57.298 32.000 0.00 0.00 0.00 1.85
36 37 7.701539 AATTTGGTGAGACATATTGTGCTAA 57.298 32.000 0.00 0.00 0.00 3.09
37 38 7.701539 AAATTTGGTGAGACATATTGTGCTA 57.298 32.000 0.00 0.00 0.00 3.49
38 39 6.594788 AAATTTGGTGAGACATATTGTGCT 57.405 33.333 0.00 0.00 0.00 4.40
39 40 7.656707 AAAAATTTGGTGAGACATATTGTGC 57.343 32.000 0.00 0.00 0.00 4.57
46 47 8.992073 GCAATTCTTAAAAATTTGGTGAGACAT 58.008 29.630 0.00 0.00 0.00 3.06
47 48 8.203485 AGCAATTCTTAAAAATTTGGTGAGACA 58.797 29.630 0.00 0.00 0.00 3.41
48 49 8.593492 AGCAATTCTTAAAAATTTGGTGAGAC 57.407 30.769 0.00 0.00 0.00 3.36
49 50 9.912634 CTAGCAATTCTTAAAAATTTGGTGAGA 57.087 29.630 0.00 0.00 0.00 3.27
50 51 9.696917 ACTAGCAATTCTTAAAAATTTGGTGAG 57.303 29.630 0.00 0.00 0.00 3.51
65 66 9.061435 GCCTTATCTTCAATAACTAGCAATTCT 57.939 33.333 0.00 0.00 0.00 2.40
66 67 9.061435 AGCCTTATCTTCAATAACTAGCAATTC 57.939 33.333 0.00 0.00 0.00 2.17
67 68 8.986929 AGCCTTATCTTCAATAACTAGCAATT 57.013 30.769 0.00 0.00 0.00 2.32
69 70 9.547753 CTTAGCCTTATCTTCAATAACTAGCAA 57.452 33.333 0.00 0.00 0.00 3.91
70 71 8.924303 TCTTAGCCTTATCTTCAATAACTAGCA 58.076 33.333 0.00 0.00 0.00 3.49
71 72 9.418045 CTCTTAGCCTTATCTTCAATAACTAGC 57.582 37.037 0.00 0.00 0.00 3.42
78 79 8.379331 GGGTTATCTCTTAGCCTTATCTTCAAT 58.621 37.037 0.00 0.00 32.03 2.57
79 80 7.347222 TGGGTTATCTCTTAGCCTTATCTTCAA 59.653 37.037 0.00 0.00 32.03 2.69
80 81 6.844388 TGGGTTATCTCTTAGCCTTATCTTCA 59.156 38.462 0.00 0.00 32.03 3.02
81 82 7.304497 TGGGTTATCTCTTAGCCTTATCTTC 57.696 40.000 0.00 0.00 32.03 2.87
82 83 7.880265 ATGGGTTATCTCTTAGCCTTATCTT 57.120 36.000 0.00 0.00 32.03 2.40
83 84 7.293535 ACAATGGGTTATCTCTTAGCCTTATCT 59.706 37.037 0.00 0.00 32.03 1.98
84 85 7.454225 ACAATGGGTTATCTCTTAGCCTTATC 58.546 38.462 0.00 0.00 32.03 1.75
85 86 7.394144 ACAATGGGTTATCTCTTAGCCTTAT 57.606 36.000 0.00 0.00 32.03 1.73
86 87 6.824958 ACAATGGGTTATCTCTTAGCCTTA 57.175 37.500 0.00 0.00 32.03 2.69
87 88 5.717119 ACAATGGGTTATCTCTTAGCCTT 57.283 39.130 0.00 0.00 32.03 4.35
88 89 6.042208 GTCTACAATGGGTTATCTCTTAGCCT 59.958 42.308 0.00 0.00 32.03 4.58
89 90 6.183360 TGTCTACAATGGGTTATCTCTTAGCC 60.183 42.308 0.00 0.00 0.00 3.93
90 91 6.817184 TGTCTACAATGGGTTATCTCTTAGC 58.183 40.000 0.00 0.00 0.00 3.09
91 92 9.838339 ATTTGTCTACAATGGGTTATCTCTTAG 57.162 33.333 0.00 0.00 35.55 2.18
93 94 9.533831 AAATTTGTCTACAATGGGTTATCTCTT 57.466 29.630 0.00 0.00 35.55 2.85
94 95 9.533831 AAAATTTGTCTACAATGGGTTATCTCT 57.466 29.630 0.00 0.00 35.55 3.10
120 121 9.617523 TCTTGCATGTGATTTAGAGATGATAAA 57.382 29.630 0.00 0.00 0.00 1.40
121 122 9.049523 GTCTTGCATGTGATTTAGAGATGATAA 57.950 33.333 0.00 0.00 0.00 1.75
122 123 8.427276 AGTCTTGCATGTGATTTAGAGATGATA 58.573 33.333 0.00 0.00 0.00 2.15
123 124 7.281098 AGTCTTGCATGTGATTTAGAGATGAT 58.719 34.615 0.00 0.00 0.00 2.45
124 125 6.647229 AGTCTTGCATGTGATTTAGAGATGA 58.353 36.000 0.00 0.00 0.00 2.92
125 126 6.922247 AGTCTTGCATGTGATTTAGAGATG 57.078 37.500 0.00 0.00 0.00 2.90
126 127 9.107177 CTTAAGTCTTGCATGTGATTTAGAGAT 57.893 33.333 0.00 0.00 0.00 2.75
127 128 8.314021 TCTTAAGTCTTGCATGTGATTTAGAGA 58.686 33.333 1.63 4.66 0.00 3.10
128 129 8.484641 TCTTAAGTCTTGCATGTGATTTAGAG 57.515 34.615 1.63 2.95 0.00 2.43
132 133 9.453572 TCTTATCTTAAGTCTTGCATGTGATTT 57.546 29.630 1.63 0.00 0.00 2.17
133 134 8.887717 GTCTTATCTTAAGTCTTGCATGTGATT 58.112 33.333 1.63 0.00 0.00 2.57
134 135 8.263640 AGTCTTATCTTAAGTCTTGCATGTGAT 58.736 33.333 1.63 0.00 0.00 3.06
135 136 7.615403 AGTCTTATCTTAAGTCTTGCATGTGA 58.385 34.615 1.63 0.00 0.00 3.58
136 137 7.840342 AGTCTTATCTTAAGTCTTGCATGTG 57.160 36.000 1.63 0.00 0.00 3.21
137 138 9.757227 GATAGTCTTATCTTAAGTCTTGCATGT 57.243 33.333 1.63 0.00 34.16 3.21
138 139 9.202273 GGATAGTCTTATCTTAAGTCTTGCATG 57.798 37.037 1.63 0.00 36.67 4.06
139 140 9.153479 AGGATAGTCTTATCTTAAGTCTTGCAT 57.847 33.333 1.63 0.00 36.67 3.96
140 141 8.540507 AGGATAGTCTTATCTTAAGTCTTGCA 57.459 34.615 1.63 0.00 36.67 4.08
151 152 9.386122 ACAATGGTTGATAGGATAGTCTTATCT 57.614 33.333 9.53 0.00 36.68 1.98
154 155 9.429109 TGTACAATGGTTGATAGGATAGTCTTA 57.571 33.333 0.00 0.00 0.00 2.10
155 156 8.319057 TGTACAATGGTTGATAGGATAGTCTT 57.681 34.615 0.00 0.00 0.00 3.01
156 157 7.914427 TGTACAATGGTTGATAGGATAGTCT 57.086 36.000 0.00 0.00 0.00 3.24
157 158 7.118390 GCATGTACAATGGTTGATAGGATAGTC 59.882 40.741 0.00 0.00 0.00 2.59
158 159 6.936900 GCATGTACAATGGTTGATAGGATAGT 59.063 38.462 0.00 0.00 0.00 2.12
159 160 6.372659 GGCATGTACAATGGTTGATAGGATAG 59.627 42.308 0.00 0.00 0.00 2.08
160 161 6.237901 GGCATGTACAATGGTTGATAGGATA 58.762 40.000 0.00 0.00 0.00 2.59
161 162 5.072741 GGCATGTACAATGGTTGATAGGAT 58.927 41.667 0.00 0.00 0.00 3.24
162 163 4.460263 GGCATGTACAATGGTTGATAGGA 58.540 43.478 0.00 0.00 0.00 2.94
163 164 3.569701 GGGCATGTACAATGGTTGATAGG 59.430 47.826 0.00 0.00 0.00 2.57
164 165 4.464008 AGGGCATGTACAATGGTTGATAG 58.536 43.478 0.00 0.00 0.00 2.08
165 166 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
166 167 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
167 168 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
168 169 4.269183 TCTTAGGGCATGTACAATGGTTG 58.731 43.478 0.00 0.00 0.00 3.77
169 170 4.584638 TCTTAGGGCATGTACAATGGTT 57.415 40.909 0.00 0.00 0.00 3.67
170 171 4.796110 ATCTTAGGGCATGTACAATGGT 57.204 40.909 0.00 0.00 0.00 3.55
171 172 5.248640 CCTATCTTAGGGCATGTACAATGG 58.751 45.833 0.00 0.00 42.42 3.16
184 185 6.442244 CCCTATCTTCTTTCCCCTATCTTAGG 59.558 46.154 0.00 0.00 45.81 2.69
185 186 7.249715 TCCCTATCTTCTTTCCCCTATCTTAG 58.750 42.308 0.00 0.00 0.00 2.18
186 187 7.188434 TCCCTATCTTCTTTCCCCTATCTTA 57.812 40.000 0.00 0.00 0.00 2.10
187 188 6.056997 TCCCTATCTTCTTTCCCCTATCTT 57.943 41.667 0.00 0.00 0.00 2.40
188 189 5.705175 TCCCTATCTTCTTTCCCCTATCT 57.295 43.478 0.00 0.00 0.00 1.98
189 190 5.279556 CGTTCCCTATCTTCTTTCCCCTATC 60.280 48.000 0.00 0.00 0.00 2.08
190 191 4.593634 CGTTCCCTATCTTCTTTCCCCTAT 59.406 45.833 0.00 0.00 0.00 2.57
191 192 3.965347 CGTTCCCTATCTTCTTTCCCCTA 59.035 47.826 0.00 0.00 0.00 3.53
192 193 2.772515 CGTTCCCTATCTTCTTTCCCCT 59.227 50.000 0.00 0.00 0.00 4.79
193 194 2.158798 CCGTTCCCTATCTTCTTTCCCC 60.159 54.545 0.00 0.00 0.00 4.81
194 195 2.158798 CCCGTTCCCTATCTTCTTTCCC 60.159 54.545 0.00 0.00 0.00 3.97
195 196 2.770232 TCCCGTTCCCTATCTTCTTTCC 59.230 50.000 0.00 0.00 0.00 3.13
196 197 3.705072 TCTCCCGTTCCCTATCTTCTTTC 59.295 47.826 0.00 0.00 0.00 2.62
197 198 3.707102 CTCTCCCGTTCCCTATCTTCTTT 59.293 47.826 0.00 0.00 0.00 2.52
198 199 3.052793 TCTCTCCCGTTCCCTATCTTCTT 60.053 47.826 0.00 0.00 0.00 2.52
199 200 2.514582 TCTCTCCCGTTCCCTATCTTCT 59.485 50.000 0.00 0.00 0.00 2.85
200 201 2.946785 TCTCTCCCGTTCCCTATCTTC 58.053 52.381 0.00 0.00 0.00 2.87
201 202 3.052793 TCTTCTCTCCCGTTCCCTATCTT 60.053 47.826 0.00 0.00 0.00 2.40
202 203 2.514582 TCTTCTCTCCCGTTCCCTATCT 59.485 50.000 0.00 0.00 0.00 1.98
203 204 2.624364 GTCTTCTCTCCCGTTCCCTATC 59.376 54.545 0.00 0.00 0.00 2.08
204 205 2.024273 TGTCTTCTCTCCCGTTCCCTAT 60.024 50.000 0.00 0.00 0.00 2.57
205 206 1.356738 TGTCTTCTCTCCCGTTCCCTA 59.643 52.381 0.00 0.00 0.00 3.53
206 207 0.114560 TGTCTTCTCTCCCGTTCCCT 59.885 55.000 0.00 0.00 0.00 4.20
207 208 0.533032 CTGTCTTCTCTCCCGTTCCC 59.467 60.000 0.00 0.00 0.00 3.97
208 209 0.533032 CCTGTCTTCTCTCCCGTTCC 59.467 60.000 0.00 0.00 0.00 3.62
209 210 0.533032 CCCTGTCTTCTCTCCCGTTC 59.467 60.000 0.00 0.00 0.00 3.95
210 211 1.545706 GCCCTGTCTTCTCTCCCGTT 61.546 60.000 0.00 0.00 0.00 4.44
211 212 1.985116 GCCCTGTCTTCTCTCCCGT 60.985 63.158 0.00 0.00 0.00 5.28
212 213 1.333636 ATGCCCTGTCTTCTCTCCCG 61.334 60.000 0.00 0.00 0.00 5.14
213 214 1.691434 CTATGCCCTGTCTTCTCTCCC 59.309 57.143 0.00 0.00 0.00 4.30
214 215 1.691434 CCTATGCCCTGTCTTCTCTCC 59.309 57.143 0.00 0.00 0.00 3.71
215 216 2.393646 ACCTATGCCCTGTCTTCTCTC 58.606 52.381 0.00 0.00 0.00 3.20
216 217 2.559381 ACCTATGCCCTGTCTTCTCT 57.441 50.000 0.00 0.00 0.00 3.10
217 218 3.961408 TCTAACCTATGCCCTGTCTTCTC 59.039 47.826 0.00 0.00 0.00 2.87
218 219 3.964031 CTCTAACCTATGCCCTGTCTTCT 59.036 47.826 0.00 0.00 0.00 2.85
219 220 3.707102 ACTCTAACCTATGCCCTGTCTTC 59.293 47.826 0.00 0.00 0.00 2.87
220 221 3.725634 ACTCTAACCTATGCCCTGTCTT 58.274 45.455 0.00 0.00 0.00 3.01
221 222 3.406512 ACTCTAACCTATGCCCTGTCT 57.593 47.619 0.00 0.00 0.00 3.41
222 223 4.650131 ACTAACTCTAACCTATGCCCTGTC 59.350 45.833 0.00 0.00 0.00 3.51
223 224 4.621769 ACTAACTCTAACCTATGCCCTGT 58.378 43.478 0.00 0.00 0.00 4.00
224 225 5.615925 AACTAACTCTAACCTATGCCCTG 57.384 43.478 0.00 0.00 0.00 4.45
225 226 5.104485 CCAAACTAACTCTAACCTATGCCCT 60.104 44.000 0.00 0.00 0.00 5.19
226 227 5.123936 CCAAACTAACTCTAACCTATGCCC 58.876 45.833 0.00 0.00 0.00 5.36
227 228 5.123936 CCCAAACTAACTCTAACCTATGCC 58.876 45.833 0.00 0.00 0.00 4.40
281 284 4.647399 CCCAAACTAACCCTTCTTGTTTGA 59.353 41.667 15.55 0.00 45.75 2.69
392 397 2.100916 CGGGGAGAGCGAGAGAAAAATA 59.899 50.000 0.00 0.00 0.00 1.40
524 529 4.452733 GTAAGGAGCCGCGCTGGT 62.453 66.667 17.38 11.60 39.88 4.00
540 545 1.522355 CGAATCTGCCATCCTGCGT 60.522 57.895 0.00 0.00 0.00 5.24
713 720 8.117312 AGTTAGATTCTAACTCTGACCTAACCT 58.883 37.037 26.36 6.74 36.86 3.50
755 762 6.539173 TCTGGCTTTGTTTGGATACTCTAAA 58.461 36.000 0.00 0.00 37.61 1.85
778 785 4.574599 ACCTTGAAGTGCAGTTCAATTC 57.425 40.909 37.23 15.16 46.64 2.17
779 786 5.343307 AAACCTTGAAGTGCAGTTCAATT 57.657 34.783 37.23 29.29 43.72 2.32
781 788 6.321181 AGAATAAACCTTGAAGTGCAGTTCAA 59.679 34.615 35.63 35.63 42.79 2.69
782 789 5.827797 AGAATAAACCTTGAAGTGCAGTTCA 59.172 36.000 28.96 28.96 34.56 3.18
783 790 6.145535 CAGAATAAACCTTGAAGTGCAGTTC 58.854 40.000 24.59 24.59 0.00 3.01
784 791 5.507985 GCAGAATAAACCTTGAAGTGCAGTT 60.508 40.000 6.46 6.46 0.00 3.16
785 792 4.022849 GCAGAATAAACCTTGAAGTGCAGT 60.023 41.667 0.00 0.00 0.00 4.40
786 793 4.022935 TGCAGAATAAACCTTGAAGTGCAG 60.023 41.667 0.00 0.00 33.65 4.41
787 794 3.888323 TGCAGAATAAACCTTGAAGTGCA 59.112 39.130 0.00 0.00 36.11 4.57
788 795 4.503741 TGCAGAATAAACCTTGAAGTGC 57.496 40.909 0.00 0.00 0.00 4.40
789 796 6.074888 CGTTTTGCAGAATAAACCTTGAAGTG 60.075 38.462 6.23 0.00 32.05 3.16
790 797 5.977129 CGTTTTGCAGAATAAACCTTGAAGT 59.023 36.000 6.23 0.00 32.05 3.01
791 798 5.977129 ACGTTTTGCAGAATAAACCTTGAAG 59.023 36.000 6.23 0.00 32.05 3.02
792 799 5.897050 ACGTTTTGCAGAATAAACCTTGAA 58.103 33.333 6.23 0.00 32.05 2.69
793 800 5.508200 ACGTTTTGCAGAATAAACCTTGA 57.492 34.783 6.23 0.00 32.05 3.02
794 801 5.627780 GGTACGTTTTGCAGAATAAACCTTG 59.372 40.000 0.00 0.00 32.05 3.61
795 802 5.299782 TGGTACGTTTTGCAGAATAAACCTT 59.700 36.000 14.49 3.73 32.05 3.50
796 803 4.822896 TGGTACGTTTTGCAGAATAAACCT 59.177 37.500 14.49 4.64 32.05 3.50
797 804 5.110940 TGGTACGTTTTGCAGAATAAACC 57.889 39.130 0.00 7.95 32.05 3.27
798 805 7.007995 GCTATTGGTACGTTTTGCAGAATAAAC 59.992 37.037 0.00 0.00 0.00 2.01
799 806 7.024768 GCTATTGGTACGTTTTGCAGAATAAA 58.975 34.615 0.00 0.00 0.00 1.40
800 807 6.373216 AGCTATTGGTACGTTTTGCAGAATAA 59.627 34.615 0.00 0.00 0.00 1.40
801 808 5.878116 AGCTATTGGTACGTTTTGCAGAATA 59.122 36.000 0.00 0.00 0.00 1.75
802 809 4.700213 AGCTATTGGTACGTTTTGCAGAAT 59.300 37.500 0.00 0.00 0.00 2.40
803 810 4.069304 AGCTATTGGTACGTTTTGCAGAA 58.931 39.130 0.00 0.00 0.00 3.02
804 811 3.670625 AGCTATTGGTACGTTTTGCAGA 58.329 40.909 0.00 0.00 0.00 4.26
805 812 3.181510 GGAGCTATTGGTACGTTTTGCAG 60.182 47.826 0.00 0.00 0.00 4.41
806 813 2.745281 GGAGCTATTGGTACGTTTTGCA 59.255 45.455 0.00 0.00 0.00 4.08
807 814 2.096980 GGGAGCTATTGGTACGTTTTGC 59.903 50.000 0.00 0.00 0.00 3.68
808 815 2.681344 GGGGAGCTATTGGTACGTTTTG 59.319 50.000 0.00 0.00 0.00 2.44
809 816 2.574824 AGGGGAGCTATTGGTACGTTTT 59.425 45.455 0.00 0.00 0.00 2.43
810 817 2.193993 AGGGGAGCTATTGGTACGTTT 58.806 47.619 0.00 0.00 0.00 3.60
811 818 1.875488 AGGGGAGCTATTGGTACGTT 58.125 50.000 0.00 0.00 0.00 3.99
812 819 1.485066 CAAGGGGAGCTATTGGTACGT 59.515 52.381 0.00 0.00 0.00 3.57
813 820 1.810412 GCAAGGGGAGCTATTGGTACG 60.810 57.143 0.00 0.00 0.00 3.67
814 821 1.211949 TGCAAGGGGAGCTATTGGTAC 59.788 52.381 0.00 0.00 0.00 3.34
815 822 1.211949 GTGCAAGGGGAGCTATTGGTA 59.788 52.381 0.00 0.00 0.00 3.25
816 823 0.034089 GTGCAAGGGGAGCTATTGGT 60.034 55.000 0.00 0.00 0.00 3.67
817 824 0.034186 TGTGCAAGGGGAGCTATTGG 60.034 55.000 0.00 0.00 0.00 3.16
818 825 1.386533 CTGTGCAAGGGGAGCTATTG 58.613 55.000 0.00 0.00 0.00 1.90
819 826 0.394899 GCTGTGCAAGGGGAGCTATT 60.395 55.000 0.00 0.00 0.00 1.73
820 827 1.225704 GCTGTGCAAGGGGAGCTAT 59.774 57.895 0.00 0.00 0.00 2.97
821 828 1.565390 ATGCTGTGCAAGGGGAGCTA 61.565 55.000 0.00 0.00 43.62 3.32
822 829 2.833604 GATGCTGTGCAAGGGGAGCT 62.834 60.000 0.00 0.00 43.62 4.09
823 830 2.362120 ATGCTGTGCAAGGGGAGC 60.362 61.111 0.00 0.00 43.62 4.70
824 831 2.110967 CGATGCTGTGCAAGGGGAG 61.111 63.158 0.00 0.00 43.62 4.30
825 832 2.046023 CGATGCTGTGCAAGGGGA 60.046 61.111 0.00 0.00 43.62 4.81
826 833 3.136123 CCGATGCTGTGCAAGGGG 61.136 66.667 0.00 0.00 43.62 4.79
828 835 2.360350 ACCCGATGCTGTGCAAGG 60.360 61.111 0.00 9.40 43.62 3.61
829 836 2.872557 CACCCGATGCTGTGCAAG 59.127 61.111 0.00 0.00 43.62 4.01
846 853 1.016627 ACATATCATGTGCACGGTGC 58.983 50.000 25.55 25.55 43.01 5.01
847 854 2.938451 AGAACATATCATGTGCACGGTG 59.062 45.455 13.13 13.66 44.07 4.94
848 855 3.198068 GAGAACATATCATGTGCACGGT 58.802 45.455 13.13 0.00 44.07 4.83
849 856 2.219445 CGAGAACATATCATGTGCACGG 59.781 50.000 13.13 7.20 45.38 4.94
850 857 3.494309 CGAGAACATATCATGTGCACG 57.506 47.619 13.13 3.29 44.26 5.34
851 858 2.032549 GGCGAGAACATATCATGTGCAC 60.033 50.000 10.75 10.75 44.07 4.57
852 859 2.158914 AGGCGAGAACATATCATGTGCA 60.159 45.455 0.28 0.00 44.07 4.57
853 860 2.487934 AGGCGAGAACATATCATGTGC 58.512 47.619 0.00 0.00 44.07 4.57
854 861 4.876125 ACTAGGCGAGAACATATCATGTG 58.124 43.478 0.28 0.00 44.07 3.21
855 862 7.197559 AGGTACTAGGCGAGAACATATCATGT 61.198 42.308 0.28 0.00 41.63 3.21
856 863 5.184096 AGGTACTAGGCGAGAACATATCATG 59.816 44.000 0.28 0.00 36.02 3.07
857 864 5.184096 CAGGTACTAGGCGAGAACATATCAT 59.816 44.000 0.28 0.00 36.02 2.45
858 865 4.519350 CAGGTACTAGGCGAGAACATATCA 59.481 45.833 0.28 0.00 36.02 2.15
859 866 4.616373 GCAGGTACTAGGCGAGAACATATC 60.616 50.000 0.28 0.00 36.02 1.63
860 867 3.256136 GCAGGTACTAGGCGAGAACATAT 59.744 47.826 0.28 0.00 36.02 1.78
861 868 2.621998 GCAGGTACTAGGCGAGAACATA 59.378 50.000 0.28 0.00 36.02 2.29
862 869 1.409427 GCAGGTACTAGGCGAGAACAT 59.591 52.381 0.28 0.00 36.02 2.71
863 870 0.815734 GCAGGTACTAGGCGAGAACA 59.184 55.000 0.28 0.00 36.02 3.18
864 871 0.102663 GGCAGGTACTAGGCGAGAAC 59.897 60.000 0.28 0.00 36.02 3.01
865 872 1.041447 GGGCAGGTACTAGGCGAGAA 61.041 60.000 0.28 0.00 36.02 2.87
866 873 1.455217 GGGCAGGTACTAGGCGAGA 60.455 63.158 0.28 0.00 36.02 4.04
867 874 2.499827 GGGGCAGGTACTAGGCGAG 61.500 68.421 0.00 0.00 36.02 5.03
868 875 2.443390 GGGGCAGGTACTAGGCGA 60.443 66.667 0.00 0.00 36.02 5.54
869 876 2.029307 GAAGGGGCAGGTACTAGGCG 62.029 65.000 0.00 0.00 36.02 5.52
870 877 0.691413 AGAAGGGGCAGGTACTAGGC 60.691 60.000 0.00 0.00 36.02 3.93
941 948 0.746659 GGGTATGCATGGACCAAAGC 59.253 55.000 18.29 13.74 37.47 3.51
1014 1029 6.659242 GGGAAATAGACAAAGAGATGAACCAA 59.341 38.462 0.00 0.00 0.00 3.67
1016 1031 5.590663 GGGGAAATAGACAAAGAGATGAACC 59.409 44.000 0.00 0.00 0.00 3.62
1018 1033 6.180472 GTGGGGAAATAGACAAAGAGATGAA 58.820 40.000 0.00 0.00 0.00 2.57
1074 1328 2.221981 GCGCCATAATCACTAGCAACTC 59.778 50.000 0.00 0.00 0.00 3.01
1175 1429 0.179119 CGCCGAAGATAAACCCGTCT 60.179 55.000 0.00 0.00 0.00 4.18
1388 1653 4.821260 TGAGCAGTGCTGAAAAGAATTACA 59.179 37.500 25.35 6.49 39.88 2.41
1389 1654 5.362556 TGAGCAGTGCTGAAAAGAATTAC 57.637 39.130 25.35 3.54 39.88 1.89
1390 1655 5.124457 GGATGAGCAGTGCTGAAAAGAATTA 59.876 40.000 25.35 0.00 39.88 1.40
1391 1656 4.082354 GGATGAGCAGTGCTGAAAAGAATT 60.082 41.667 25.35 0.00 39.88 2.17
1398 1679 3.198417 TCTTATGGATGAGCAGTGCTGAA 59.802 43.478 25.35 11.25 39.88 3.02
1404 1685 3.895232 AACGTCTTATGGATGAGCAGT 57.105 42.857 0.00 0.00 35.12 4.40
1407 1688 4.391830 TGTTGAAACGTCTTATGGATGAGC 59.608 41.667 0.00 0.00 35.12 4.26
1408 1689 5.163854 GGTGTTGAAACGTCTTATGGATGAG 60.164 44.000 0.00 0.00 35.12 2.90
1422 1703 6.215845 AGATATGTTTTGCAGGTGTTGAAAC 58.784 36.000 1.79 1.79 0.00 2.78
1477 1758 9.897744 CATTGCAGTTTACAGAAATTAAGAAGA 57.102 29.630 0.00 0.00 0.00 2.87
1478 1759 9.683069 ACATTGCAGTTTACAGAAATTAAGAAG 57.317 29.630 0.00 0.00 0.00 2.85
1482 1763 9.891828 CAGTACATTGCAGTTTACAGAAATTAA 57.108 29.630 8.07 0.00 0.00 1.40
1483 1764 9.278978 TCAGTACATTGCAGTTTACAGAAATTA 57.721 29.630 8.07 0.00 0.00 1.40
1484 1765 8.165239 TCAGTACATTGCAGTTTACAGAAATT 57.835 30.769 8.07 0.00 0.00 1.82
1485 1766 7.744087 TCAGTACATTGCAGTTTACAGAAAT 57.256 32.000 8.07 0.00 0.00 2.17
1486 1767 7.443879 TCATCAGTACATTGCAGTTTACAGAAA 59.556 33.333 8.07 0.00 0.00 2.52
1487 1768 6.934083 TCATCAGTACATTGCAGTTTACAGAA 59.066 34.615 8.07 0.00 0.00 3.02
1488 1769 6.463360 TCATCAGTACATTGCAGTTTACAGA 58.537 36.000 8.07 5.83 0.00 3.41
1489 1770 6.726258 TCATCAGTACATTGCAGTTTACAG 57.274 37.500 8.07 0.69 0.00 2.74
1490 1771 6.710295 ACTTCATCAGTACATTGCAGTTTACA 59.290 34.615 8.07 0.00 31.97 2.41
1491 1772 7.017645 CACTTCATCAGTACATTGCAGTTTAC 58.982 38.462 0.00 0.00 32.76 2.01
1492 1773 6.934083 TCACTTCATCAGTACATTGCAGTTTA 59.066 34.615 0.00 0.00 32.76 2.01
1493 1774 5.764686 TCACTTCATCAGTACATTGCAGTTT 59.235 36.000 0.00 0.00 32.76 2.66
1494 1775 5.308014 TCACTTCATCAGTACATTGCAGTT 58.692 37.500 0.00 0.00 32.76 3.16
1495 1776 4.898320 TCACTTCATCAGTACATTGCAGT 58.102 39.130 0.00 0.00 32.76 4.40
1496 1777 5.583457 TCATCACTTCATCAGTACATTGCAG 59.417 40.000 0.00 0.00 32.76 4.41
1497 1778 5.490159 TCATCACTTCATCAGTACATTGCA 58.510 37.500 0.00 0.00 32.76 4.08
1498 1779 6.259387 TCATCATCACTTCATCAGTACATTGC 59.741 38.462 0.00 0.00 32.76 3.56
1499 1780 7.279313 TGTCATCATCACTTCATCAGTACATTG 59.721 37.037 0.00 0.00 32.76 2.82
1500 1781 7.333323 TGTCATCATCACTTCATCAGTACATT 58.667 34.615 0.00 0.00 32.76 2.71
1501 1782 6.881570 TGTCATCATCACTTCATCAGTACAT 58.118 36.000 0.00 0.00 32.76 2.29
1502 1783 6.284891 TGTCATCATCACTTCATCAGTACA 57.715 37.500 0.00 0.00 32.76 2.90
1503 1784 5.752472 CCTGTCATCATCACTTCATCAGTAC 59.248 44.000 0.00 0.00 32.76 2.73
1504 1785 5.423290 ACCTGTCATCATCACTTCATCAGTA 59.577 40.000 0.00 0.00 32.76 2.74
1505 1786 4.224594 ACCTGTCATCATCACTTCATCAGT 59.775 41.667 0.00 0.00 35.35 3.41
1506 1787 4.767478 ACCTGTCATCATCACTTCATCAG 58.233 43.478 0.00 0.00 0.00 2.90
1507 1788 4.831674 ACCTGTCATCATCACTTCATCA 57.168 40.909 0.00 0.00 0.00 3.07
1508 1789 7.714377 AGAATAACCTGTCATCATCACTTCATC 59.286 37.037 0.00 0.00 0.00 2.92
1509 1790 7.498239 CAGAATAACCTGTCATCATCACTTCAT 59.502 37.037 0.00 0.00 0.00 2.57
1510 1791 6.820152 CAGAATAACCTGTCATCATCACTTCA 59.180 38.462 0.00 0.00 0.00 3.02
1511 1792 6.238320 GCAGAATAACCTGTCATCATCACTTC 60.238 42.308 0.00 0.00 36.57 3.01
1512 1793 5.587844 GCAGAATAACCTGTCATCATCACTT 59.412 40.000 0.00 0.00 36.57 3.16
1513 1794 5.104610 AGCAGAATAACCTGTCATCATCACT 60.105 40.000 0.00 0.00 36.57 3.41
1514 1795 5.007430 CAGCAGAATAACCTGTCATCATCAC 59.993 44.000 0.00 0.00 36.57 3.06
1537 1818 1.191535 CATCCCCGGTAGACTTGTCA 58.808 55.000 0.00 0.00 0.00 3.58
1579 1860 3.322254 AGTTCTCCACACTGACCTTGTAG 59.678 47.826 0.00 0.00 0.00 2.74
1585 1866 1.618837 TGCTAGTTCTCCACACTGACC 59.381 52.381 0.00 0.00 0.00 4.02
1588 1869 1.344438 TGGTGCTAGTTCTCCACACTG 59.656 52.381 0.00 0.00 0.00 3.66
1594 1875 2.093606 GGGTACTTGGTGCTAGTTCTCC 60.094 54.545 0.00 0.00 0.00 3.71
1597 1878 2.935676 GCAGGGTACTTGGTGCTAGTTC 60.936 54.545 0.00 0.00 32.97 3.01
1610 1891 3.975168 TCTCCTTTGTAAGCAGGGTAC 57.025 47.619 0.00 0.00 0.00 3.34
1614 1895 5.352569 CACTGTATTCTCCTTTGTAAGCAGG 59.647 44.000 0.00 0.00 0.00 4.85
1629 1910 2.092968 TGTGCCTCATCCCACTGTATTC 60.093 50.000 0.00 0.00 33.26 1.75
1632 1913 1.210234 CATGTGCCTCATCCCACTGTA 59.790 52.381 0.00 0.00 34.09 2.74
1683 2027 6.947644 TGACATCATCCTAATGTGAAATGG 57.052 37.500 0.00 0.00 37.47 3.16
1705 2049 0.729116 CCAGGTCGTGCATAAGCTTG 59.271 55.000 9.86 0.00 42.74 4.01
1810 2154 3.498777 TCAGTGTCAGTTCAGAGACGTAG 59.501 47.826 0.00 0.00 36.94 3.51
1885 2236 6.128391 GCCGTGTCAGTTCATCAATTAAGTTA 60.128 38.462 0.00 0.00 0.00 2.24
1891 2242 2.503331 TGCCGTGTCAGTTCATCAATT 58.497 42.857 0.00 0.00 0.00 2.32
1894 2245 1.441738 CATGCCGTGTCAGTTCATCA 58.558 50.000 0.00 0.00 0.00 3.07
1905 2256 1.153353 ACGAGTTTTACCATGCCGTG 58.847 50.000 0.00 0.00 0.00 4.94
1908 2259 4.215613 AGAGAAAACGAGTTTTACCATGCC 59.784 41.667 13.16 1.02 42.26 4.40
1919 2270 4.931661 TGTTCAGGTAGAGAAAACGAGT 57.068 40.909 0.00 0.00 0.00 4.18
1920 2271 5.805994 GGTATGTTCAGGTAGAGAAAACGAG 59.194 44.000 0.00 0.00 0.00 4.18
1921 2272 5.337009 GGGTATGTTCAGGTAGAGAAAACGA 60.337 44.000 0.00 0.00 0.00 3.85
1923 2274 6.051179 AGGGTATGTTCAGGTAGAGAAAAC 57.949 41.667 0.00 0.00 0.00 2.43
1924 2275 6.573680 CGAAGGGTATGTTCAGGTAGAGAAAA 60.574 42.308 0.00 0.00 0.00 2.29
1937 2288 0.175073 GGTCGAGCGAAGGGTATGTT 59.825 55.000 0.00 0.00 0.00 2.71
1943 2297 0.108138 AATCAAGGTCGAGCGAAGGG 60.108 55.000 9.28 0.00 0.00 3.95
1948 2302 4.116961 TGGTTAATAATCAAGGTCGAGCG 58.883 43.478 9.28 0.00 0.00 5.03
1955 2309 5.882557 AGACAGTGCTGGTTAATAATCAAGG 59.117 40.000 4.11 0.00 34.19 3.61
1964 2318 3.552132 TTGTCAGACAGTGCTGGTTAA 57.448 42.857 2.82 5.43 36.55 2.01
1965 2319 3.552132 TTTGTCAGACAGTGCTGGTTA 57.448 42.857 2.82 0.00 36.55 2.85
1966 2320 2.418368 TTTGTCAGACAGTGCTGGTT 57.582 45.000 2.82 0.00 36.55 3.67
1968 2322 1.068748 GCATTTGTCAGACAGTGCTGG 60.069 52.381 24.88 8.34 38.04 4.85
1971 2325 2.095869 CAGAGCATTTGTCAGACAGTGC 60.096 50.000 24.83 24.83 39.94 4.40
1972 2326 2.095869 GCAGAGCATTTGTCAGACAGTG 60.096 50.000 2.82 8.30 0.00 3.66
1973 2327 2.149578 GCAGAGCATTTGTCAGACAGT 58.850 47.619 2.82 0.00 0.00 3.55
1974 2328 2.148768 TGCAGAGCATTTGTCAGACAG 58.851 47.619 2.82 0.00 31.71 3.51
1975 2329 2.148768 CTGCAGAGCATTTGTCAGACA 58.851 47.619 8.42 0.00 38.13 3.41
1976 2330 1.467734 CCTGCAGAGCATTTGTCAGAC 59.532 52.381 17.39 0.00 38.13 3.51
1977 2331 1.817357 CCTGCAGAGCATTTGTCAGA 58.183 50.000 17.39 0.00 38.13 3.27
1978 2332 0.170561 GCCTGCAGAGCATTTGTCAG 59.829 55.000 17.39 0.00 38.13 3.51
1979 2333 0.537828 TGCCTGCAGAGCATTTGTCA 60.538 50.000 21.35 2.36 38.13 3.58
1980 2334 2.260247 TGCCTGCAGAGCATTTGTC 58.740 52.632 21.35 0.20 38.13 3.18
1981 2335 4.506039 TGCCTGCAGAGCATTTGT 57.494 50.000 21.35 0.00 38.13 2.83
2063 2417 1.203441 TGAATCTGGGGCTGAGCAGT 61.203 55.000 6.82 0.00 0.00 4.40
2099 2453 7.820648 TCTAAAAGATTCTGAACCTTCATTGC 58.179 34.615 0.00 0.00 36.46 3.56
2100 2454 9.784680 CATCTAAAAGATTCTGAACCTTCATTG 57.215 33.333 0.00 0.00 32.53 2.82
2104 2458 7.622893 AGCATCTAAAAGATTCTGAACCTTC 57.377 36.000 0.00 0.00 31.32 3.46
2125 2480 7.077605 CACATTCAAATTAAGAACGAAGAGCA 58.922 34.615 0.00 0.00 0.00 4.26
2126 2481 6.032880 GCACATTCAAATTAAGAACGAAGAGC 59.967 38.462 0.00 0.00 0.00 4.09
2142 2497 2.159212 GCACATATGGCAGCACATTCAA 60.159 45.455 7.80 0.00 32.39 2.69
2162 2517 2.893637 ACATGGTGTAATCGTCTCTGC 58.106 47.619 0.00 0.00 0.00 4.26
2259 3178 3.490890 CTGTCAAAGCCGCCTAGC 58.509 61.111 0.00 0.00 0.00 3.42
2292 3211 2.814280 AAGGATGAGAACAACGTCGT 57.186 45.000 0.00 0.00 0.00 4.34
2322 3241 1.809133 TGGAGTTCCCACCAGTACAA 58.191 50.000 0.00 0.00 40.82 2.41
2331 3250 2.203523 TCCGTCGTGGAGTTCCCA 60.204 61.111 0.00 0.00 43.74 4.37
2370 3289 1.676635 GGCATGTGCAAGCAGGAGA 60.677 57.895 7.36 0.00 44.36 3.71
2376 3295 4.487412 GCCGAGGCATGTGCAAGC 62.487 66.667 9.58 0.00 44.36 4.01
2410 3329 5.086104 ACATGACATACCTGGTACTTGTC 57.914 43.478 24.15 24.15 37.73 3.18
2431 3350 3.726607 CATCTGTAGGGAAGATGCTGAC 58.273 50.000 0.82 0.00 43.26 3.51
2447 3366 3.057526 TCGGTGTCAACTACTGTCATCTG 60.058 47.826 0.00 0.00 0.00 2.90
2448 3367 3.154710 TCGGTGTCAACTACTGTCATCT 58.845 45.455 0.00 0.00 0.00 2.90
2449 3368 3.570926 TCGGTGTCAACTACTGTCATC 57.429 47.619 0.00 0.00 0.00 2.92
2454 3374 6.273071 TGATAATCATCGGTGTCAACTACTG 58.727 40.000 0.00 0.00 33.51 2.74
2468 3388 5.805486 GCATTGCATGGTCATGATAATCATC 59.195 40.000 14.43 0.00 41.20 2.92
2512 3440 7.234355 AGTAATTCCTATATGCCCCTTTTGAG 58.766 38.462 0.00 0.00 0.00 3.02
2745 3674 3.245229 ACCAAAGGATGCATGAACCTGTA 60.245 43.478 2.46 0.00 34.03 2.74
2747 3676 2.094390 CACCAAAGGATGCATGAACCTG 60.094 50.000 2.46 0.00 34.03 4.00
2897 3826 4.719369 GTCTCGTCGGCCAGCGTT 62.719 66.667 14.38 0.00 0.00 4.84
2901 3830 4.803426 GGCAGTCTCGTCGGCCAG 62.803 72.222 2.24 0.00 45.39 4.85
2951 3880 4.967084 TTAGTTACTTGCAACTCCTCCA 57.033 40.909 0.00 0.00 39.45 3.86
3044 3973 5.334724 GATCTGAATCCAGGCAAAAATGT 57.665 39.130 0.00 0.00 40.76 2.71
3057 3986 5.346281 GGATGTATTTCGTCGGATCTGAATC 59.654 44.000 5.62 3.09 33.20 2.52
3068 3997 6.151004 GCTTACCTCTAGGATGTATTTCGTC 58.849 44.000 2.23 0.00 38.94 4.20
3129 4058 4.465632 AATTACCGTGACACAGCTGATA 57.534 40.909 23.35 0.00 0.00 2.15
3355 4284 2.675348 GTTTCGGCTCATCTCCAGAAAG 59.325 50.000 0.00 0.00 31.80 2.62
3374 4303 3.820557 ACACTGGCAAGTATTCACAGTT 58.179 40.909 0.00 0.00 39.27 3.16
3377 4306 3.314913 CACAACACTGGCAAGTATTCACA 59.685 43.478 0.00 0.00 33.79 3.58
3378 4307 3.315191 ACACAACACTGGCAAGTATTCAC 59.685 43.478 0.00 0.00 33.79 3.18
3396 4332 6.347240 GCATGTTTTGTTTTTCAGTTCACACA 60.347 34.615 0.00 0.00 0.00 3.72
3481 4420 2.114411 GTTTTGGGGGCGTCTCCA 59.886 61.111 3.23 3.23 36.21 3.86
3604 4543 1.379710 CCATTGCCCCCATGTTCGA 60.380 57.895 0.00 0.00 0.00 3.71
3605 4544 1.379710 TCCATTGCCCCCATGTTCG 60.380 57.895 0.00 0.00 0.00 3.95
3676 4615 8.778358 TGCATGCGTATTCATGTACAAATAATA 58.222 29.630 14.09 1.93 44.20 0.98
3680 4619 5.497635 TGCATGCGTATTCATGTACAAAT 57.502 34.783 14.09 0.00 44.20 2.32
3684 4623 4.213674 CACATGCATGCGTATTCATGTAC 58.786 43.478 25.51 2.43 45.29 2.90
3797 4742 7.494922 AATACATGAAAATTAGGGGCTTGTT 57.505 32.000 0.00 0.00 0.00 2.83
3901 4846 8.898983 AAAGAATTTCAAATTTTTGTGTGCAG 57.101 26.923 0.00 0.00 39.18 4.41
3984 4930 6.435430 TGAACTCCGAAAAATGACATATGG 57.565 37.500 7.80 0.00 0.00 2.74
3994 4940 7.561251 TGTATAGGATGATGAACTCCGAAAAA 58.439 34.615 0.00 0.00 36.62 1.94
4010 4956 6.716628 CACTGGTTGGCATTTATGTATAGGAT 59.283 38.462 0.00 0.00 0.00 3.24
4062 5008 6.540189 CCCAAGAGTTTCATCTGAATTCGTAT 59.460 38.462 0.04 0.00 33.54 3.06
4156 5102 2.356382 CGTTCCTGCAACCAGTAAACAA 59.644 45.455 0.00 0.00 37.38 2.83
4203 5149 1.942677 ACACATCAACGAACGACCAA 58.057 45.000 0.14 0.00 0.00 3.67
4301 5247 3.684990 AGCGCGCAGAGTTCCTCA 61.685 61.111 35.10 0.00 32.06 3.86
4314 5260 4.452733 AAGCCGGAGTACCAGCGC 62.453 66.667 5.05 0.00 43.69 5.92
4422 5368 8.357402 AGCTACAAAATGAAATAAAACCGACTT 58.643 29.630 0.00 0.00 0.00 3.01
4491 5579 0.890683 CCATCACTTTTGACCCTGGC 59.109 55.000 0.00 0.00 33.38 4.85
4494 5582 0.779997 AGGCCATCACTTTTGACCCT 59.220 50.000 5.01 0.00 33.38 4.34
4508 5596 2.797177 TTGTATGCATACACAGGCCA 57.203 45.000 33.74 18.63 42.48 5.36
4539 5631 9.827411 GAGATAATAAAATCGCCCTTTATCAAC 57.173 33.333 0.00 0.00 31.56 3.18
4540 5632 9.567776 TGAGATAATAAAATCGCCCTTTATCAA 57.432 29.630 0.00 0.00 31.56 2.57
4541 5633 9.567776 TTGAGATAATAAAATCGCCCTTTATCA 57.432 29.630 0.00 0.00 31.56 2.15
4550 5642 9.663904 TGCTACATTTTGAGATAATAAAATCGC 57.336 29.630 0.00 0.00 35.07 4.58
4593 5685 6.342906 CAAAGACCGGGTGTTACTCATAATA 58.657 40.000 10.27 0.00 0.00 0.98
4623 5715 0.106569 TTGGGCCATGTGCATCCTAG 60.107 55.000 7.26 0.00 43.89 3.02
4626 5718 1.274167 CATATTGGGCCATGTGCATCC 59.726 52.381 7.26 2.58 43.89 3.51
4627 5719 2.241160 TCATATTGGGCCATGTGCATC 58.759 47.619 7.26 1.62 43.89 3.91
4640 5732 3.745332 TGCGAGCACACTTTCATATTG 57.255 42.857 0.00 0.00 0.00 1.90
4663 5755 1.407437 GCTGTAGGCTGTAACCATGCT 60.407 52.381 0.00 0.00 38.06 3.79
4791 6152 5.818678 TCTGTTCTGGTAAAGAGCCTTTA 57.181 39.130 3.99 3.99 35.35 1.85
5122 6505 3.073678 TCGCCGAGTGTTGTACTAGTTA 58.926 45.455 0.00 0.00 40.53 2.24
5123 6506 1.881973 TCGCCGAGTGTTGTACTAGTT 59.118 47.619 0.00 0.00 40.53 2.24
5124 6507 1.527034 TCGCCGAGTGTTGTACTAGT 58.473 50.000 0.00 0.00 40.53 2.57
5137 6520 1.153353 GTTGAATTGTCCTTCGCCGA 58.847 50.000 0.00 0.00 0.00 5.54
5145 6528 6.366061 GTCTTGCTTATTTGGTTGAATTGTCC 59.634 38.462 0.00 0.00 0.00 4.02
5150 6533 7.775053 TTAGGTCTTGCTTATTTGGTTGAAT 57.225 32.000 0.00 0.00 0.00 2.57
5161 6544 4.725490 AGTGCCTTTTTAGGTCTTGCTTA 58.275 39.130 0.00 0.00 0.00 3.09
5206 6589 1.006998 TGATTTCCCATTCCCACCCAG 59.993 52.381 0.00 0.00 0.00 4.45
5220 6603 2.069273 CCACCTCGTCACACTGATTTC 58.931 52.381 0.00 0.00 0.00 2.17
5236 6619 1.119684 AAAACAAGTTGAGGCCCACC 58.880 50.000 10.54 0.00 0.00 4.61
5238 6621 2.298729 GCATAAAACAAGTTGAGGCCCA 59.701 45.455 10.54 0.00 0.00 5.36
5241 6624 4.237724 GGAAGCATAAAACAAGTTGAGGC 58.762 43.478 10.54 0.00 0.00 4.70
5267 6650 2.707849 CCGTTCCCACCGAGACGAT 61.708 63.158 0.00 0.00 37.69 3.73
5268 6651 3.367743 CCGTTCCCACCGAGACGA 61.368 66.667 0.00 0.00 37.69 4.20
5284 6667 4.274950 TCCGAAAAGTGTTTCTTCATGTCC 59.725 41.667 0.00 0.00 40.94 4.02
5371 6754 2.297701 GCACCTTCCAGTTTGTTCTCA 58.702 47.619 0.00 0.00 0.00 3.27
5378 6761 0.535102 CCTCACGCACCTTCCAGTTT 60.535 55.000 0.00 0.00 0.00 2.66
5381 6764 0.389948 GTACCTCACGCACCTTCCAG 60.390 60.000 0.00 0.00 0.00 3.86
5542 6925 5.586155 TTTTCCTACTATGTTCCCCAACA 57.414 39.130 0.00 0.00 46.71 3.33
5565 6948 4.634004 TCATCGGTGATGCGTAGAATTTTT 59.366 37.500 0.00 0.00 39.63 1.94
5566 6949 4.188462 TCATCGGTGATGCGTAGAATTTT 58.812 39.130 0.00 0.00 39.63 1.82
5567 6950 3.792401 TCATCGGTGATGCGTAGAATTT 58.208 40.909 0.00 0.00 39.63 1.82
5568 6951 3.452755 TCATCGGTGATGCGTAGAATT 57.547 42.857 0.00 0.00 39.63 2.17
5569 6952 3.579709 GATCATCGGTGATGCGTAGAAT 58.420 45.455 17.68 0.00 44.96 2.40
5570 6953 2.288213 GGATCATCGGTGATGCGTAGAA 60.288 50.000 17.68 0.00 44.96 2.10
5571 6954 1.269723 GGATCATCGGTGATGCGTAGA 59.730 52.381 17.68 0.00 44.96 2.59
5572 6955 1.702886 GGATCATCGGTGATGCGTAG 58.297 55.000 17.68 0.00 44.96 3.51
5573 6956 3.886044 GGATCATCGGTGATGCGTA 57.114 52.632 17.68 0.00 44.96 4.42
5574 6957 4.758692 GGATCATCGGTGATGCGT 57.241 55.556 17.68 0.00 44.96 5.24
5577 6960 1.270826 ACGCTAGGATCATCGGTGATG 59.729 52.381 17.68 2.30 44.96 3.07
5579 6962 0.952280 GACGCTAGGATCATCGGTGA 59.048 55.000 0.00 0.00 39.04 4.02
5580 6963 0.386100 CGACGCTAGGATCATCGGTG 60.386 60.000 0.00 0.00 0.00 4.94
5581 6964 0.534427 TCGACGCTAGGATCATCGGT 60.534 55.000 0.00 0.00 33.66 4.69
5582 6965 0.591659 TTCGACGCTAGGATCATCGG 59.408 55.000 0.00 0.00 33.66 4.18
5583 6966 1.002792 TGTTCGACGCTAGGATCATCG 60.003 52.381 0.00 0.00 0.00 3.84
5584 6967 2.290916 TCTGTTCGACGCTAGGATCATC 59.709 50.000 0.00 0.00 0.00 2.92
5585 6968 2.033550 GTCTGTTCGACGCTAGGATCAT 59.966 50.000 0.00 0.00 32.04 2.45
5586 6969 1.400846 GTCTGTTCGACGCTAGGATCA 59.599 52.381 0.00 0.00 32.04 2.92
5587 6970 2.108178 GTCTGTTCGACGCTAGGATC 57.892 55.000 0.00 0.00 32.04 3.36
5597 6980 1.848932 CGGAGGTGTCGTCTGTTCGA 61.849 60.000 0.00 0.00 37.51 3.71
5598 6981 1.442184 CGGAGGTGTCGTCTGTTCG 60.442 63.158 0.00 0.00 0.00 3.95
5599 6982 1.733399 GCGGAGGTGTCGTCTGTTC 60.733 63.158 0.00 0.00 0.00 3.18
5600 6983 2.338984 GCGGAGGTGTCGTCTGTT 59.661 61.111 0.00 0.00 0.00 3.16
5601 6984 4.039357 CGCGGAGGTGTCGTCTGT 62.039 66.667 0.00 0.00 0.00 3.41
5602 6985 3.553437 AACGCGGAGGTGTCGTCTG 62.553 63.158 12.47 0.00 35.39 3.51
5603 6986 3.264866 GAACGCGGAGGTGTCGTCT 62.265 63.158 12.47 0.00 35.39 4.18
5604 6987 2.804090 GAACGCGGAGGTGTCGTC 60.804 66.667 12.47 0.00 35.39 4.20
5605 6988 3.141522 TTGAACGCGGAGGTGTCGT 62.142 57.895 12.47 0.00 35.39 4.34
5606 6989 2.355363 TTGAACGCGGAGGTGTCG 60.355 61.111 12.47 0.00 35.39 4.35
5607 6990 1.593209 TGTTGAACGCGGAGGTGTC 60.593 57.895 12.47 0.00 35.39 3.67
5608 6991 1.885850 GTGTTGAACGCGGAGGTGT 60.886 57.895 12.47 0.00 38.89 4.16
5609 6992 1.885388 TGTGTTGAACGCGGAGGTG 60.885 57.895 12.47 0.00 0.00 4.00
5610 6993 1.885850 GTGTGTTGAACGCGGAGGT 60.886 57.895 12.47 0.00 0.00 3.85
5611 6994 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
5616 6999 1.199859 CCGTACGTGTGTTGAACGC 59.800 57.895 15.21 1.20 44.80 4.84
5617 7000 0.922717 AACCGTACGTGTGTTGAACG 59.077 50.000 15.21 0.00 46.32 3.95
5618 7001 1.004715 CCAACCGTACGTGTGTTGAAC 60.005 52.381 26.91 1.04 41.38 3.18
5619 7002 1.288350 CCAACCGTACGTGTGTTGAA 58.712 50.000 26.91 0.00 41.38 2.69
5620 7003 0.530211 CCCAACCGTACGTGTGTTGA 60.530 55.000 26.91 0.00 41.38 3.18
5621 7004 1.500512 CCCCAACCGTACGTGTGTTG 61.501 60.000 21.61 21.61 39.20 3.33
5622 7005 1.227615 CCCCAACCGTACGTGTGTT 60.228 57.895 15.21 8.50 0.00 3.32
5623 7006 2.132996 TCCCCAACCGTACGTGTGT 61.133 57.895 15.21 1.81 0.00 3.72
5624 7007 2.735883 TCCCCAACCGTACGTGTG 59.264 61.111 15.21 11.18 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.