Multiple sequence alignment - TraesCS3B01G195500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G195500 chr3B 100.000 4343 0 0 1 4343 221988429 221984087 0.000000e+00 8021.0
1 TraesCS3B01G195500 chr3B 100.000 1746 0 0 5432 7177 221982998 221981253 0.000000e+00 3225.0
2 TraesCS3B01G195500 chr3B 95.819 1196 33 5 5983 7177 221914962 221913783 0.000000e+00 1916.0
3 TraesCS3B01G195500 chr3B 91.941 1216 66 22 5983 7177 215387702 215386498 0.000000e+00 1674.0
4 TraesCS3B01G195500 chr3B 96.413 892 20 5 5432 6323 221468744 221467865 0.000000e+00 1459.0
5 TraesCS3B01G195500 chr3B 100.000 632 0 0 4532 5163 221983898 221983267 0.000000e+00 1168.0
6 TraesCS3B01G195500 chr3B 92.368 642 38 3 6348 6989 221467871 221467241 0.000000e+00 904.0
7 TraesCS3B01G195500 chr3B 95.079 569 24 4 5983 6550 221753622 221753057 0.000000e+00 893.0
8 TraesCS3B01G195500 chr3B 94.542 568 24 3 5983 6550 215116175 215115615 0.000000e+00 870.0
9 TraesCS3B01G195500 chr3B 85.405 555 63 11 3071 3616 469633136 469632591 1.750000e-155 560.0
10 TraesCS3B01G195500 chr3B 94.613 297 14 2 4532 4827 221469091 221468796 6.560000e-125 459.0
11 TraesCS3B01G195500 chr3B 84.665 463 45 7 3663 4123 215589051 215588613 8.550000e-119 438.0
12 TraesCS3B01G195500 chr3B 87.601 371 32 6 2986 3351 223525936 223526297 1.110000e-112 418.0
13 TraesCS3B01G195500 chr3B 96.429 140 5 0 4083 4222 221478744 221478605 1.560000e-56 231.0
14 TraesCS3B01G195500 chr3B 97.656 128 3 0 4214 4341 221469290 221469163 3.370000e-53 220.0
15 TraesCS3B01G195500 chr3B 96.907 97 3 0 7081 7177 221467242 221467146 5.760000e-36 163.0
16 TraesCS3B01G195500 chr3B 94.340 106 6 0 6548 6653 221752954 221752849 5.760000e-36 163.0
17 TraesCS3B01G195500 chr3B 87.500 96 5 2 7088 7176 203346947 203346852 3.540000e-18 104.0
18 TraesCS3B01G195500 chr3B 87.500 96 5 2 7088 7176 203554071 203553976 3.540000e-18 104.0
19 TraesCS3B01G195500 chr3B 96.667 60 2 0 6598 6657 203554385 203554326 4.580000e-17 100.0
20 TraesCS3B01G195500 chr3B 92.424 66 3 1 6988 7053 706537409 706537472 7.670000e-15 93.5
21 TraesCS3B01G195500 chr3B 92.424 66 1 2 6988 7051 822221173 822221110 2.760000e-14 91.6
22 TraesCS3B01G195500 chr3B 92.424 66 1 2 6988 7051 822311529 822311466 2.760000e-14 91.6
23 TraesCS3B01G195500 chr3A 96.946 2914 74 6 711 3619 166930907 166928004 0.000000e+00 4874.0
24 TraesCS3B01G195500 chr3A 92.458 1432 73 17 5472 6903 166926230 166924834 0.000000e+00 2013.0
25 TraesCS3B01G195500 chr3A 97.202 679 15 2 3664 4341 166928011 166927336 0.000000e+00 1146.0
26 TraesCS3B01G195500 chr3A 89.450 872 72 7 2546 3415 181135567 181134714 0.000000e+00 1083.0
27 TraesCS3B01G195500 chr3A 92.208 539 35 1 4532 5063 166927268 166926730 0.000000e+00 756.0
28 TraesCS3B01G195500 chr3A 93.576 467 22 5 5945 6408 181107799 181107338 0.000000e+00 689.0
29 TraesCS3B01G195500 chr3A 86.864 609 58 7 3663 4260 181110024 181109427 0.000000e+00 662.0
30 TraesCS3B01G195500 chr3A 88.482 382 33 6 2986 3358 177893695 177893316 1.100000e-122 451.0
31 TraesCS3B01G195500 chr3A 93.407 91 3 3 7088 7176 159833189 159833100 1.620000e-26 132.0
32 TraesCS3B01G195500 chr3A 87.356 87 9 1 5077 5163 166926751 166926667 1.650000e-16 99.0
33 TraesCS3B01G195500 chr3A 81.197 117 16 6 278 391 453181370 453181483 9.920000e-14 89.8
34 TraesCS3B01G195500 chr3A 98.000 50 1 0 3619 3668 303833212 303833261 3.570000e-13 87.9
35 TraesCS3B01G195500 chr3A 98.000 50 0 1 3619 3668 111160788 111160836 1.280000e-12 86.1
36 TraesCS3B01G195500 chr3A 95.556 45 2 0 6706 6750 159433613 159433569 9.990000e-09 73.1
37 TraesCS3B01G195500 chr3A 79.348 92 12 5 267 357 464484984 464485069 2.800000e-04 58.4
38 TraesCS3B01G195500 chr3A 97.059 34 0 1 3361 3393 177889449 177889416 1.000000e-03 56.5
39 TraesCS3B01G195500 chr3D 96.430 2913 86 7 711 3619 149551319 149548421 0.000000e+00 4787.0
40 TraesCS3B01G195500 chr3D 89.077 1474 79 33 5434 6903 149547019 149545624 0.000000e+00 1755.0
41 TraesCS3B01G195500 chr3D 90.637 1036 94 1 2546 3581 149763592 149764624 0.000000e+00 1373.0
42 TraesCS3B01G195500 chr3D 96.769 681 20 2 3663 4341 149548429 149547749 0.000000e+00 1134.0
43 TraesCS3B01G195500 chr3D 90.581 637 48 4 4532 5160 149547682 149547050 0.000000e+00 833.0
44 TraesCS3B01G195500 chr3D 95.106 470 16 4 5942 6408 149767058 149767523 0.000000e+00 734.0
45 TraesCS3B01G195500 chr3D 87.752 596 55 8 3663 4247 149764822 149765410 0.000000e+00 680.0
46 TraesCS3B01G195500 chr3D 88.337 403 40 5 3089 3485 360693456 360693055 1.810000e-130 477.0
47 TraesCS3B01G195500 chr3D 89.333 375 36 3 2986 3358 152696507 152696879 1.090000e-127 468.0
48 TraesCS3B01G195500 chr3D 85.350 471 39 7 3663 4123 149234362 149233912 1.820000e-125 460.0
49 TraesCS3B01G195500 chr3D 85.138 471 40 6 3663 4123 147325215 147325665 8.490000e-124 455.0
50 TraesCS3B01G195500 chr3D 84.199 462 42 6 3664 4115 149207914 149207474 3.100000e-113 420.0
51 TraesCS3B01G195500 chr3D 83.153 463 47 8 3663 4115 147332895 147333336 1.880000e-105 394.0
52 TraesCS3B01G195500 chr3D 85.714 378 34 14 6034 6408 149207364 149207004 1.460000e-101 381.0
53 TraesCS3B01G195500 chr3D 84.342 281 39 3 2233 2513 149763320 149763595 3.300000e-68 270.0
54 TraesCS3B01G195500 chr3D 92.126 127 10 0 3493 3619 149234480 149234354 5.720000e-41 180.0
55 TraesCS3B01G195500 chr3D 96.053 76 3 0 6582 6657 141412169 141412094 2.720000e-24 124.0
56 TraesCS3B01G195500 chr3D 90.123 81 8 0 7087 7167 147334563 147334643 9.850000e-19 106.0
57 TraesCS3B01G195500 chr3D 90.123 81 8 0 7087 7167 149206247 149206167 9.850000e-19 106.0
58 TraesCS3B01G195500 chr3D 92.537 67 2 2 6988 7053 534687051 534687115 7.670000e-15 93.5
59 TraesCS3B01G195500 chr3D 92.063 63 3 1 6983 7045 550253918 550253858 3.570000e-13 87.9
60 TraesCS3B01G195500 chr3D 97.059 34 1 0 698 731 149551406 149551373 2.800000e-04 58.4
61 TraesCS3B01G195500 chr6A 90.000 100 7 3 7079 7176 146440415 146440513 7.560000e-25 126.0
62 TraesCS3B01G195500 chr6A 96.774 62 2 0 6596 6657 146438793 146438854 3.540000e-18 104.0
63 TraesCS3B01G195500 chr6A 86.957 92 9 3 4248 4336 7167075 7167166 4.580000e-17 100.0
64 TraesCS3B01G195500 chr5D 79.762 168 26 8 222 382 267982536 267982702 1.640000e-21 115.0
65 TraesCS3B01G195500 chrUn 87.097 93 8 4 4248 4336 79949250 79949158 1.270000e-17 102.0
66 TraesCS3B01G195500 chrUn 100.000 47 0 0 3618 3664 134955083 134955037 3.570000e-13 87.9
67 TraesCS3B01G195500 chrUn 100.000 47 0 0 3618 3664 152553120 152553074 3.570000e-13 87.9
68 TraesCS3B01G195500 chr7D 81.102 127 18 6 267 391 3100525 3100403 5.930000e-16 97.1
69 TraesCS3B01G195500 chr7D 81.102 127 18 6 267 391 3163241 3163363 5.930000e-16 97.1
70 TraesCS3B01G195500 chr4A 94.828 58 3 0 3607 3664 577542831 577542774 2.760000e-14 91.6
71 TraesCS3B01G195500 chr4A 80.723 83 15 1 4260 4341 610111309 610111227 6.010000e-06 63.9
72 TraesCS3B01G195500 chr2B 98.039 51 1 0 3618 3668 311720277 311720327 9.920000e-14 89.8
73 TraesCS3B01G195500 chr6B 100.000 47 0 0 3618 3664 103670373 103670327 3.570000e-13 87.9
74 TraesCS3B01G195500 chr6B 80.000 115 20 3 273 384 87993815 87993701 1.660000e-11 82.4
75 TraesCS3B01G195500 chr4B 90.000 70 3 2 6984 7051 413089298 413089365 3.570000e-13 87.9
76 TraesCS3B01G195500 chr1B 98.000 50 1 0 3615 3664 668948307 668948356 3.570000e-13 87.9
77 TraesCS3B01G195500 chr1A 98.000 50 1 0 3615 3664 497512012 497512061 3.570000e-13 87.9
78 TraesCS3B01G195500 chr5B 85.227 88 5 4 6982 7063 436465178 436465263 4.610000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G195500 chr3B 221981253 221988429 7176 True 4138.000000 8021 100.000000 1 7177 3 chr3B.!!$R13 7176
1 TraesCS3B01G195500 chr3B 221913783 221914962 1179 True 1916.000000 1916 95.819000 5983 7177 1 chr3B.!!$R6 1194
2 TraesCS3B01G195500 chr3B 215386498 215387702 1204 True 1674.000000 1674 91.941000 5983 7177 1 chr3B.!!$R3 1194
3 TraesCS3B01G195500 chr3B 215115615 215116175 560 True 870.000000 870 94.542000 5983 6550 1 chr3B.!!$R2 567
4 TraesCS3B01G195500 chr3B 221467146 221469290 2144 True 641.000000 1459 95.591400 4214 7177 5 chr3B.!!$R11 2963
5 TraesCS3B01G195500 chr3B 469632591 469633136 545 True 560.000000 560 85.405000 3071 3616 1 chr3B.!!$R7 545
6 TraesCS3B01G195500 chr3B 221752849 221753622 773 True 528.000000 893 94.709500 5983 6653 2 chr3B.!!$R12 670
7 TraesCS3B01G195500 chr3A 166924834 166930907 6073 True 1777.600000 4874 93.234000 711 6903 5 chr3A.!!$R4 6192
8 TraesCS3B01G195500 chr3A 181134714 181135567 853 True 1083.000000 1083 89.450000 2546 3415 1 chr3A.!!$R3 869
9 TraesCS3B01G195500 chr3A 181107338 181110024 2686 True 675.500000 689 90.220000 3663 6408 2 chr3A.!!$R6 2745
10 TraesCS3B01G195500 chr3A 177889416 177893695 4279 True 253.750000 451 92.770500 2986 3393 2 chr3A.!!$R5 407
11 TraesCS3B01G195500 chr3D 149545624 149551406 5782 True 1713.480000 4787 93.983200 698 6903 5 chr3D.!!$R6 6205
12 TraesCS3B01G195500 chr3D 149763320 149767523 4203 False 764.250000 1373 89.459250 2233 6408 4 chr3D.!!$F5 4175
13 TraesCS3B01G195500 chr3D 149233912 149234480 568 True 320.000000 460 88.738000 3493 4123 2 chr3D.!!$R5 630
14 TraesCS3B01G195500 chr3D 149206167 149207914 1747 True 302.333333 420 86.678667 3664 7167 3 chr3D.!!$R4 3503
15 TraesCS3B01G195500 chr3D 147332895 147334643 1748 False 250.000000 394 86.638000 3663 7167 2 chr3D.!!$F4 3504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1035 0.041839 CCGCTGATTGTCGCATTAGC 60.042 55.000 0.00 0.0 37.42 3.09 F
1105 1180 1.068194 CGCTGAGACTCTTTCGGTCTT 60.068 52.381 3.68 0.0 43.13 3.01 F
1771 1851 0.877071 GTGCCAGTGTTCATGGTGAG 59.123 55.000 0.00 0.0 40.17 3.51 F
2113 2193 0.874390 TTCGTCAACAGCTTGATGCC 59.126 50.000 3.15 0.0 41.52 4.40 F
3634 7764 0.327191 TATGACCCTTCCCTGGACCC 60.327 60.000 0.00 0.0 0.00 4.46 F
4341 8483 0.033894 AAAACGGTTGTCCCACACCT 60.034 50.000 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1851 0.747283 CTGGCACATCCAAGCTCTCC 60.747 60.000 0.00 0.0 46.01 3.71 R
2093 2173 1.400242 GGCATCAAGCTGTTGACGAAC 60.400 52.381 0.00 0.0 45.58 3.95 R
3615 7745 0.327191 GGGTCCAGGGAAGGGTCATA 60.327 60.000 0.00 0.0 0.00 2.15 R
3639 7769 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.0 46.47 4.01 R
4762 8904 0.906756 CCTCTCCTCCAACTCTGCCA 60.907 60.000 0.00 0.0 0.00 4.92 R
6317 11670 0.173481 CAAGCTACTCTGCGCTACCA 59.827 55.000 9.73 0.0 34.96 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.847956 CTGATTCATTGTTTCAAAAAGCCA 57.152 33.333 0.00 0.00 0.00 4.75
24 25 7.249186 CTGATTCATTGTTTCAAAAAGCCAA 57.751 32.000 0.00 0.00 0.00 4.52
25 26 7.249186 TGATTCATTGTTTCAAAAAGCCAAG 57.751 32.000 0.00 0.00 0.00 3.61
26 27 7.046652 TGATTCATTGTTTCAAAAAGCCAAGA 58.953 30.769 0.00 0.00 0.00 3.02
27 28 7.551974 TGATTCATTGTTTCAAAAAGCCAAGAA 59.448 29.630 0.00 0.00 0.00 2.52
28 29 7.678947 TTCATTGTTTCAAAAAGCCAAGAAA 57.321 28.000 0.00 0.00 0.00 2.52
29 30 7.306205 TCATTGTTTCAAAAAGCCAAGAAAG 57.694 32.000 0.00 0.00 31.35 2.62
30 31 5.544136 TTGTTTCAAAAAGCCAAGAAAGC 57.456 34.783 0.00 0.00 31.35 3.51
31 32 3.616379 TGTTTCAAAAAGCCAAGAAAGCG 59.384 39.130 0.00 0.00 31.35 4.68
32 33 2.507339 TCAAAAAGCCAAGAAAGCGG 57.493 45.000 0.00 0.00 34.64 5.52
33 34 1.068434 TCAAAAAGCCAAGAAAGCGGG 59.932 47.619 0.00 0.00 34.64 6.13
34 35 1.068434 CAAAAAGCCAAGAAAGCGGGA 59.932 47.619 0.00 0.00 34.64 5.14
35 36 1.408969 AAAAGCCAAGAAAGCGGGAA 58.591 45.000 0.00 0.00 34.64 3.97
36 37 1.408969 AAAGCCAAGAAAGCGGGAAA 58.591 45.000 0.00 0.00 34.64 3.13
37 38 1.408969 AAGCCAAGAAAGCGGGAAAA 58.591 45.000 0.00 0.00 34.64 2.29
38 39 1.632589 AGCCAAGAAAGCGGGAAAAT 58.367 45.000 0.00 0.00 34.64 1.82
39 40 1.546029 AGCCAAGAAAGCGGGAAAATC 59.454 47.619 0.00 0.00 34.64 2.17
40 41 1.272212 GCCAAGAAAGCGGGAAAATCA 59.728 47.619 0.00 0.00 0.00 2.57
41 42 2.094026 GCCAAGAAAGCGGGAAAATCAT 60.094 45.455 0.00 0.00 0.00 2.45
42 43 3.130340 GCCAAGAAAGCGGGAAAATCATA 59.870 43.478 0.00 0.00 0.00 2.15
43 44 4.381505 GCCAAGAAAGCGGGAAAATCATAA 60.382 41.667 0.00 0.00 0.00 1.90
44 45 5.719173 CCAAGAAAGCGGGAAAATCATAAA 58.281 37.500 0.00 0.00 0.00 1.40
45 46 5.576774 CCAAGAAAGCGGGAAAATCATAAAC 59.423 40.000 0.00 0.00 0.00 2.01
46 47 4.981794 AGAAAGCGGGAAAATCATAAACG 58.018 39.130 0.00 0.00 0.00 3.60
47 48 3.775661 AAGCGGGAAAATCATAAACGG 57.224 42.857 0.00 0.00 0.00 4.44
48 49 1.404035 AGCGGGAAAATCATAAACGGC 59.596 47.619 0.00 0.00 0.00 5.68
49 50 1.133407 GCGGGAAAATCATAAACGGCA 59.867 47.619 0.00 0.00 0.00 5.69
50 51 2.792749 CGGGAAAATCATAAACGGCAC 58.207 47.619 0.00 0.00 0.00 5.01
51 52 2.478879 CGGGAAAATCATAAACGGCACC 60.479 50.000 0.00 0.00 0.00 5.01
52 53 2.758423 GGGAAAATCATAAACGGCACCT 59.242 45.455 0.00 0.00 0.00 4.00
53 54 3.194755 GGGAAAATCATAAACGGCACCTT 59.805 43.478 0.00 0.00 0.00 3.50
54 55 4.399934 GGGAAAATCATAAACGGCACCTTA 59.600 41.667 0.00 0.00 0.00 2.69
55 56 5.105675 GGGAAAATCATAAACGGCACCTTAA 60.106 40.000 0.00 0.00 0.00 1.85
56 57 6.033966 GGAAAATCATAAACGGCACCTTAAG 58.966 40.000 0.00 0.00 0.00 1.85
57 58 4.632538 AATCATAAACGGCACCTTAAGC 57.367 40.909 0.00 0.00 0.00 3.09
58 59 2.004017 TCATAAACGGCACCTTAAGCG 58.996 47.619 0.00 0.00 0.00 4.68
59 60 0.730840 ATAAACGGCACCTTAAGCGC 59.269 50.000 0.00 0.00 0.00 5.92
60 61 1.300266 TAAACGGCACCTTAAGCGCC 61.300 55.000 19.30 19.30 42.64 6.53
80 81 2.624316 GCTTAAAAGCCAACCGGTAC 57.376 50.000 8.00 0.00 46.20 3.34
81 82 1.881324 GCTTAAAAGCCAACCGGTACA 59.119 47.619 8.00 0.00 46.20 2.90
82 83 2.095415 GCTTAAAAGCCAACCGGTACAG 60.095 50.000 8.00 0.00 46.20 2.74
83 84 2.188062 TAAAAGCCAACCGGTACAGG 57.812 50.000 8.00 12.23 37.30 4.00
84 85 0.538746 AAAAGCCAACCGGTACAGGG 60.539 55.000 16.82 8.96 35.02 4.45
85 86 3.562732 AAGCCAACCGGTACAGGGC 62.563 63.158 24.18 24.18 44.92 5.19
88 89 4.690719 CAACCGGTACAGGGCGCA 62.691 66.667 16.82 0.00 35.02 6.09
89 90 3.943691 AACCGGTACAGGGCGCAA 61.944 61.111 16.82 0.00 35.02 4.85
90 91 4.692475 ACCGGTACAGGGCGCAAC 62.692 66.667 16.82 0.24 35.02 4.17
100 101 4.136250 GGCGCAACCCCTATACAC 57.864 61.111 10.83 0.00 0.00 2.90
101 102 1.525442 GGCGCAACCCCTATACACT 59.475 57.895 10.83 0.00 0.00 3.55
102 103 0.754472 GGCGCAACCCCTATACACTA 59.246 55.000 10.83 0.00 0.00 2.74
103 104 1.270147 GGCGCAACCCCTATACACTAG 60.270 57.143 10.83 0.00 0.00 2.57
104 105 1.270147 GCGCAACCCCTATACACTAGG 60.270 57.143 0.30 0.00 34.52 3.02
105 106 2.037144 CGCAACCCCTATACACTAGGT 58.963 52.381 0.00 0.00 32.88 3.08
106 107 2.035576 CGCAACCCCTATACACTAGGTC 59.964 54.545 0.00 0.00 32.88 3.85
107 108 3.306613 GCAACCCCTATACACTAGGTCT 58.693 50.000 0.00 0.00 32.88 3.85
108 109 3.710165 GCAACCCCTATACACTAGGTCTT 59.290 47.826 0.00 0.00 32.88 3.01
109 110 4.163649 GCAACCCCTATACACTAGGTCTTT 59.836 45.833 0.00 0.00 32.88 2.52
110 111 5.338953 GCAACCCCTATACACTAGGTCTTTT 60.339 44.000 0.00 0.00 32.88 2.27
111 112 6.126968 GCAACCCCTATACACTAGGTCTTTTA 60.127 42.308 0.00 0.00 32.88 1.52
112 113 7.498443 CAACCCCTATACACTAGGTCTTTTAG 58.502 42.308 0.00 0.00 32.88 1.85
113 114 5.601729 ACCCCTATACACTAGGTCTTTTAGC 59.398 44.000 0.00 0.00 32.88 3.09
114 115 5.278858 CCCCTATACACTAGGTCTTTTAGCG 60.279 48.000 0.00 0.00 32.88 4.26
115 116 5.533903 CCCTATACACTAGGTCTTTTAGCGA 59.466 44.000 0.00 0.00 32.88 4.93
116 117 6.208994 CCCTATACACTAGGTCTTTTAGCGAT 59.791 42.308 0.00 0.00 32.88 4.58
117 118 7.306953 CCTATACACTAGGTCTTTTAGCGATC 58.693 42.308 0.00 0.00 0.00 3.69
118 119 4.388378 ACACTAGGTCTTTTAGCGATCC 57.612 45.455 0.00 0.00 0.00 3.36
119 120 3.181489 ACACTAGGTCTTTTAGCGATCCG 60.181 47.826 0.00 0.00 0.00 4.18
120 121 3.066342 CACTAGGTCTTTTAGCGATCCGA 59.934 47.826 0.00 0.00 0.00 4.55
121 122 2.580966 AGGTCTTTTAGCGATCCGAC 57.419 50.000 0.00 0.00 0.00 4.79
122 123 1.136500 AGGTCTTTTAGCGATCCGACC 59.864 52.381 8.79 8.79 40.84 4.79
123 124 1.568606 GTCTTTTAGCGATCCGACCC 58.431 55.000 0.00 0.00 0.00 4.46
124 125 1.134907 GTCTTTTAGCGATCCGACCCA 60.135 52.381 0.00 0.00 0.00 4.51
125 126 1.760613 TCTTTTAGCGATCCGACCCAT 59.239 47.619 0.00 0.00 0.00 4.00
126 127 2.169769 TCTTTTAGCGATCCGACCCATT 59.830 45.455 0.00 0.00 0.00 3.16
127 128 2.702592 TTTAGCGATCCGACCCATTT 57.297 45.000 0.00 0.00 0.00 2.32
128 129 2.234300 TTAGCGATCCGACCCATTTC 57.766 50.000 0.00 0.00 0.00 2.17
129 130 1.410004 TAGCGATCCGACCCATTTCT 58.590 50.000 0.00 0.00 0.00 2.52
130 131 0.541863 AGCGATCCGACCCATTTCTT 59.458 50.000 0.00 0.00 0.00 2.52
131 132 0.938008 GCGATCCGACCCATTTCTTC 59.062 55.000 0.00 0.00 0.00 2.87
132 133 1.473434 GCGATCCGACCCATTTCTTCT 60.473 52.381 0.00 0.00 0.00 2.85
133 134 2.474816 CGATCCGACCCATTTCTTCTC 58.525 52.381 0.00 0.00 0.00 2.87
134 135 2.101582 CGATCCGACCCATTTCTTCTCT 59.898 50.000 0.00 0.00 0.00 3.10
135 136 3.723260 GATCCGACCCATTTCTTCTCTC 58.277 50.000 0.00 0.00 0.00 3.20
136 137 2.821437 TCCGACCCATTTCTTCTCTCT 58.179 47.619 0.00 0.00 0.00 3.10
137 138 2.497675 TCCGACCCATTTCTTCTCTCTG 59.502 50.000 0.00 0.00 0.00 3.35
138 139 2.234908 CCGACCCATTTCTTCTCTCTGT 59.765 50.000 0.00 0.00 0.00 3.41
139 140 3.307059 CCGACCCATTTCTTCTCTCTGTT 60.307 47.826 0.00 0.00 0.00 3.16
140 141 3.929610 CGACCCATTTCTTCTCTCTGTTC 59.070 47.826 0.00 0.00 0.00 3.18
141 142 4.561530 CGACCCATTTCTTCTCTCTGTTCA 60.562 45.833 0.00 0.00 0.00 3.18
142 143 5.495640 GACCCATTTCTTCTCTCTGTTCAT 58.504 41.667 0.00 0.00 0.00 2.57
143 144 5.885465 ACCCATTTCTTCTCTCTGTTCATT 58.115 37.500 0.00 0.00 0.00 2.57
144 145 6.310149 ACCCATTTCTTCTCTCTGTTCATTT 58.690 36.000 0.00 0.00 0.00 2.32
145 146 6.779539 ACCCATTTCTTCTCTCTGTTCATTTT 59.220 34.615 0.00 0.00 0.00 1.82
146 147 7.040132 ACCCATTTCTTCTCTCTGTTCATTTTC 60.040 37.037 0.00 0.00 0.00 2.29
147 148 7.176340 CCCATTTCTTCTCTCTGTTCATTTTCT 59.824 37.037 0.00 0.00 0.00 2.52
148 149 8.574737 CCATTTCTTCTCTCTGTTCATTTTCTT 58.425 33.333 0.00 0.00 0.00 2.52
149 150 9.609950 CATTTCTTCTCTCTGTTCATTTTCTTC 57.390 33.333 0.00 0.00 0.00 2.87
150 151 8.970859 TTTCTTCTCTCTGTTCATTTTCTTCT 57.029 30.769 0.00 0.00 0.00 2.85
151 152 7.959689 TCTTCTCTCTGTTCATTTTCTTCTG 57.040 36.000 0.00 0.00 0.00 3.02
152 153 6.426328 TCTTCTCTCTGTTCATTTTCTTCTGC 59.574 38.462 0.00 0.00 0.00 4.26
153 154 4.687948 TCTCTCTGTTCATTTTCTTCTGCG 59.312 41.667 0.00 0.00 0.00 5.18
154 155 4.380531 TCTCTGTTCATTTTCTTCTGCGT 58.619 39.130 0.00 0.00 0.00 5.24
155 156 4.816385 TCTCTGTTCATTTTCTTCTGCGTT 59.184 37.500 0.00 0.00 0.00 4.84
156 157 5.296780 TCTCTGTTCATTTTCTTCTGCGTTT 59.703 36.000 0.00 0.00 0.00 3.60
157 158 5.510671 TCTGTTCATTTTCTTCTGCGTTTC 58.489 37.500 0.00 0.00 0.00 2.78
158 159 4.606961 TGTTCATTTTCTTCTGCGTTTCC 58.393 39.130 0.00 0.00 0.00 3.13
159 160 4.097135 TGTTCATTTTCTTCTGCGTTTCCA 59.903 37.500 0.00 0.00 0.00 3.53
160 161 4.223320 TCATTTTCTTCTGCGTTTCCAC 57.777 40.909 0.00 0.00 0.00 4.02
170 171 3.537471 CGTTTCCACGTGGGTTTTC 57.463 52.632 33.40 17.74 41.84 2.29
171 172 1.018910 CGTTTCCACGTGGGTTTTCT 58.981 50.000 33.40 0.00 41.84 2.52
172 173 2.211806 CGTTTCCACGTGGGTTTTCTA 58.788 47.619 33.40 10.46 41.84 2.10
173 174 2.032636 CGTTTCCACGTGGGTTTTCTAC 60.033 50.000 33.40 18.17 41.84 2.59
174 175 2.944349 GTTTCCACGTGGGTTTTCTACA 59.056 45.455 33.40 8.84 38.11 2.74
175 176 3.495434 TTCCACGTGGGTTTTCTACAT 57.505 42.857 33.40 0.00 38.11 2.29
176 177 3.495434 TCCACGTGGGTTTTCTACATT 57.505 42.857 33.40 0.00 38.11 2.71
177 178 3.822940 TCCACGTGGGTTTTCTACATTT 58.177 40.909 33.40 0.00 38.11 2.32
178 179 4.208746 TCCACGTGGGTTTTCTACATTTT 58.791 39.130 33.40 0.00 38.11 1.82
179 180 4.276431 TCCACGTGGGTTTTCTACATTTTC 59.724 41.667 33.40 0.00 38.11 2.29
180 181 4.277423 CCACGTGGGTTTTCTACATTTTCT 59.723 41.667 27.57 0.00 0.00 2.52
181 182 5.221165 CCACGTGGGTTTTCTACATTTTCTT 60.221 40.000 27.57 0.00 0.00 2.52
182 183 5.912955 CACGTGGGTTTTCTACATTTTCTTC 59.087 40.000 7.95 0.00 0.00 2.87
183 184 5.826208 ACGTGGGTTTTCTACATTTTCTTCT 59.174 36.000 0.00 0.00 0.00 2.85
184 185 6.320418 ACGTGGGTTTTCTACATTTTCTTCTT 59.680 34.615 0.00 0.00 0.00 2.52
185 186 7.499895 ACGTGGGTTTTCTACATTTTCTTCTTA 59.500 33.333 0.00 0.00 0.00 2.10
186 187 8.512138 CGTGGGTTTTCTACATTTTCTTCTTAT 58.488 33.333 0.00 0.00 0.00 1.73
241 242 9.729281 ATTCTTAAATGCATGAACCTTTTTCAT 57.271 25.926 0.00 0.00 39.53 2.57
247 248 9.675464 AAATGCATGAACCTTTTTCATATTGAT 57.325 25.926 0.00 0.00 37.06 2.57
248 249 9.675464 AATGCATGAACCTTTTTCATATTGATT 57.325 25.926 0.00 0.00 37.06 2.57
318 319 9.761504 TTCTTCAATTTCAATGACTATTTTGCA 57.238 25.926 0.00 0.00 0.00 4.08
319 320 9.761504 TCTTCAATTTCAATGACTATTTTGCAA 57.238 25.926 0.00 0.00 0.00 4.08
322 323 9.545105 TCAATTTCAATGACTATTTTGCAAACT 57.455 25.926 12.39 9.52 0.00 2.66
323 324 9.801714 CAATTTCAATGACTATTTTGCAAACTC 57.198 29.630 12.39 5.01 0.00 3.01
324 325 7.621832 TTTCAATGACTATTTTGCAAACTCG 57.378 32.000 12.39 5.41 0.00 4.18
325 326 6.552859 TCAATGACTATTTTGCAAACTCGA 57.447 33.333 12.39 0.00 0.00 4.04
326 327 7.144722 TCAATGACTATTTTGCAAACTCGAT 57.855 32.000 12.39 5.32 0.00 3.59
327 328 7.022979 TCAATGACTATTTTGCAAACTCGATG 58.977 34.615 12.39 4.45 0.00 3.84
328 329 6.741992 ATGACTATTTTGCAAACTCGATGA 57.258 33.333 12.39 0.00 0.00 2.92
329 330 6.741992 TGACTATTTTGCAAACTCGATGAT 57.258 33.333 12.39 3.40 0.00 2.45
330 331 7.144722 TGACTATTTTGCAAACTCGATGATT 57.855 32.000 12.39 0.00 0.00 2.57
331 332 7.592938 TGACTATTTTGCAAACTCGATGATTT 58.407 30.769 12.39 0.00 0.00 2.17
332 333 8.081633 TGACTATTTTGCAAACTCGATGATTTT 58.918 29.630 12.39 0.00 0.00 1.82
333 334 8.816640 ACTATTTTGCAAACTCGATGATTTTT 57.183 26.923 12.39 0.00 0.00 1.94
385 386 8.885494 AATTCGGTGAAATCTTTTCAAATTCA 57.115 26.923 4.37 0.00 0.00 2.57
386 387 8.885494 ATTCGGTGAAATCTTTTCAAATTCAA 57.115 26.923 4.37 0.00 32.36 2.69
387 388 8.885494 TTCGGTGAAATCTTTTCAAATTCAAT 57.115 26.923 4.37 0.00 32.36 2.57
388 389 8.296799 TCGGTGAAATCTTTTCAAATTCAATG 57.703 30.769 4.37 0.00 32.36 2.82
389 390 8.140628 TCGGTGAAATCTTTTCAAATTCAATGA 58.859 29.630 4.37 0.00 32.36 2.57
390 391 8.763356 CGGTGAAATCTTTTCAAATTCAATGAA 58.237 29.630 0.00 0.00 35.11 2.57
479 480 9.840427 ATTTATCTGAACATGTTTTAAGTTCGG 57.160 29.630 13.36 3.21 45.48 4.30
480 481 5.103290 TCTGAACATGTTTTAAGTTCGGC 57.897 39.130 13.36 0.00 44.38 5.54
481 482 3.879427 TGAACATGTTTTAAGTTCGGCG 58.121 40.909 13.36 0.00 43.36 6.46
482 483 3.560481 TGAACATGTTTTAAGTTCGGCGA 59.440 39.130 13.36 4.99 43.36 5.54
483 484 4.214545 TGAACATGTTTTAAGTTCGGCGAT 59.785 37.500 11.76 0.00 43.36 4.58
484 485 4.759516 ACATGTTTTAAGTTCGGCGATT 57.240 36.364 11.76 5.58 0.00 3.34
485 486 5.116069 ACATGTTTTAAGTTCGGCGATTT 57.884 34.783 11.76 11.37 0.00 2.17
486 487 5.525199 ACATGTTTTAAGTTCGGCGATTTT 58.475 33.333 11.76 10.98 0.00 1.82
487 488 5.980715 ACATGTTTTAAGTTCGGCGATTTTT 59.019 32.000 11.76 8.32 0.00 1.94
537 538 8.488979 AAATTCATGAACGTTTTAGAAGTTCG 57.511 30.769 11.07 0.00 45.04 3.95
538 539 6.592798 TTCATGAACGTTTTAGAAGTTCGT 57.407 33.333 3.38 0.57 45.04 3.85
541 542 6.592798 ATGAACGTTTTAGAAGTTCGTGAA 57.407 33.333 0.46 0.00 45.04 3.18
542 543 5.788467 TGAACGTTTTAGAAGTTCGTGAAC 58.212 37.500 0.46 4.58 45.04 3.18
543 544 5.348179 TGAACGTTTTAGAAGTTCGTGAACA 59.652 36.000 14.61 0.00 45.04 3.18
544 545 5.978934 ACGTTTTAGAAGTTCGTGAACAT 57.021 34.783 14.61 2.82 43.47 2.71
545 546 6.354039 ACGTTTTAGAAGTTCGTGAACATT 57.646 33.333 14.61 6.38 43.47 2.71
546 547 6.778108 ACGTTTTAGAAGTTCGTGAACATTT 58.222 32.000 14.61 1.66 43.47 2.32
547 548 7.245604 ACGTTTTAGAAGTTCGTGAACATTTT 58.754 30.769 14.61 0.98 43.47 1.82
548 549 7.751793 ACGTTTTAGAAGTTCGTGAACATTTTT 59.248 29.630 14.61 0.64 43.47 1.94
549 550 8.042119 CGTTTTAGAAGTTCGTGAACATTTTTG 58.958 33.333 14.61 0.00 43.47 2.44
550 551 9.068008 GTTTTAGAAGTTCGTGAACATTTTTGA 57.932 29.630 14.61 0.00 43.47 2.69
551 552 9.627395 TTTTAGAAGTTCGTGAACATTTTTGAA 57.373 25.926 14.61 0.00 43.47 2.69
552 553 9.627395 TTTAGAAGTTCGTGAACATTTTTGAAA 57.373 25.926 14.61 3.70 43.47 2.69
553 554 9.796120 TTAGAAGTTCGTGAACATTTTTGAAAT 57.204 25.926 14.61 0.00 43.47 2.17
554 555 8.340230 AGAAGTTCGTGAACATTTTTGAAATC 57.660 30.769 14.61 0.00 43.47 2.17
555 556 7.973388 AGAAGTTCGTGAACATTTTTGAAATCA 59.027 29.630 14.61 0.00 43.47 2.57
556 557 8.647143 AAGTTCGTGAACATTTTTGAAATCAT 57.353 26.923 14.61 0.00 43.47 2.45
557 558 8.064447 AGTTCGTGAACATTTTTGAAATCATG 57.936 30.769 14.61 0.00 43.47 3.07
558 559 7.920151 AGTTCGTGAACATTTTTGAAATCATGA 59.080 29.630 14.61 0.00 43.47 3.07
559 560 8.538856 GTTCGTGAACATTTTTGAAATCATGAA 58.461 29.630 0.00 8.31 39.30 2.57
560 561 8.060020 TCGTGAACATTTTTGAAATCATGAAC 57.940 30.769 0.00 0.00 31.81 3.18
561 562 7.920151 TCGTGAACATTTTTGAAATCATGAACT 59.080 29.630 0.00 0.00 31.81 3.01
562 563 8.542132 CGTGAACATTTTTGAAATCATGAACTT 58.458 29.630 0.00 0.00 0.00 2.66
591 592 9.822185 AAAGACAAAACTTTATTTCTTCAGCAT 57.178 25.926 0.00 0.00 38.16 3.79
592 593 9.822185 AAGACAAAACTTTATTTCTTCAGCATT 57.178 25.926 0.00 0.00 0.00 3.56
593 594 9.822185 AGACAAAACTTTATTTCTTCAGCATTT 57.178 25.926 0.00 0.00 0.00 2.32
627 628 4.590487 TTGACCGGTCAATCGAGC 57.410 55.556 39.59 12.24 43.90 5.03
640 641 2.998667 CGAGCGCTCGCCTTTAAG 59.001 61.111 42.50 17.91 46.50 1.85
641 642 1.516386 CGAGCGCTCGCCTTTAAGA 60.516 57.895 42.50 0.00 46.50 2.10
642 643 0.872021 CGAGCGCTCGCCTTTAAGAT 60.872 55.000 42.50 0.76 46.50 2.40
643 644 0.579156 GAGCGCTCGCCTTTAAGATG 59.421 55.000 23.61 0.00 43.17 2.90
644 645 0.811616 AGCGCTCGCCTTTAAGATGG 60.812 55.000 2.64 0.00 43.17 3.51
645 646 1.776034 GCGCTCGCCTTTAAGATGGG 61.776 60.000 0.00 0.00 34.56 4.00
646 647 1.776034 CGCTCGCCTTTAAGATGGGC 61.776 60.000 0.00 0.00 42.18 5.36
647 648 1.448119 GCTCGCCTTTAAGATGGGCC 61.448 60.000 0.00 0.00 42.58 5.80
648 649 0.819666 CTCGCCTTTAAGATGGGCCC 60.820 60.000 17.59 17.59 42.58 5.80
649 650 2.186826 CGCCTTTAAGATGGGCCCG 61.187 63.158 19.37 0.00 42.58 6.13
650 651 2.490148 GCCTTTAAGATGGGCCCGC 61.490 63.158 19.37 12.32 39.96 6.13
651 652 1.828224 CCTTTAAGATGGGCCCGCC 60.828 63.158 19.37 11.58 0.00 6.13
683 684 3.479269 CGTGAGCGCCGGTTTCTC 61.479 66.667 2.29 8.03 0.00 2.87
684 685 3.119096 GTGAGCGCCGGTTTCTCC 61.119 66.667 2.29 0.00 0.00 3.71
685 686 3.621805 TGAGCGCCGGTTTCTCCA 61.622 61.111 2.29 0.00 35.57 3.86
686 687 2.125106 GAGCGCCGGTTTCTCCAT 60.125 61.111 2.29 0.00 35.57 3.41
687 688 2.436646 AGCGCCGGTTTCTCCATG 60.437 61.111 2.29 0.00 35.57 3.66
688 689 2.746277 GCGCCGGTTTCTCCATGT 60.746 61.111 1.90 0.00 35.57 3.21
689 690 3.039202 GCGCCGGTTTCTCCATGTG 62.039 63.158 1.90 0.00 35.57 3.21
690 691 2.398554 CGCCGGTTTCTCCATGTGG 61.399 63.158 1.90 0.00 35.57 4.17
691 692 2.700773 GCCGGTTTCTCCATGTGGC 61.701 63.158 1.90 0.00 35.57 5.01
692 693 2.046285 CCGGTTTCTCCATGTGGCC 61.046 63.158 0.00 0.00 35.57 5.36
693 694 2.046285 CGGTTTCTCCATGTGGCCC 61.046 63.158 0.00 0.00 35.57 5.80
694 695 1.682344 GGTTTCTCCATGTGGCCCC 60.682 63.158 0.00 0.00 35.97 5.80
695 696 1.076549 GTTTCTCCATGTGGCCCCA 59.923 57.895 0.00 0.00 34.44 4.96
696 697 0.967380 GTTTCTCCATGTGGCCCCAG 60.967 60.000 0.00 0.00 34.44 4.45
756 831 4.224609 GGGGCTTGGGCTATGGGG 62.225 72.222 0.00 0.00 38.73 4.96
757 832 4.224609 GGGCTTGGGCTATGGGGG 62.225 72.222 0.00 0.00 38.73 5.40
960 1035 0.041839 CCGCTGATTGTCGCATTAGC 60.042 55.000 0.00 0.00 37.42 3.09
972 1047 7.408132 TTGTCGCATTAGCTGTTATATCTTC 57.592 36.000 0.00 0.00 39.10 2.87
1105 1180 1.068194 CGCTGAGACTCTTTCGGTCTT 60.068 52.381 3.68 0.00 43.13 3.01
1216 1291 4.284234 TGGTGGTTAGGTCTTGGTTAGTAC 59.716 45.833 0.00 0.00 0.00 2.73
1218 1293 5.476614 GTGGTTAGGTCTTGGTTAGTACAG 58.523 45.833 0.00 0.00 0.00 2.74
1229 1304 9.896263 GTCTTGGTTAGTACAGTATATTAGAGC 57.104 37.037 0.00 0.00 0.00 4.09
1300 1379 1.860641 TCTCCGCACTCCTTTGGATA 58.139 50.000 0.00 0.00 0.00 2.59
1457 1536 8.109634 ACTGATTGGTTCCAGATATTTGTAAGT 58.890 33.333 0.00 0.00 34.65 2.24
1461 1540 8.934023 TTGGTTCCAGATATTTGTAAGTCTTT 57.066 30.769 0.00 0.00 0.00 2.52
1771 1851 0.877071 GTGCCAGTGTTCATGGTGAG 59.123 55.000 0.00 0.00 40.17 3.51
1951 2031 6.263168 ACTCTGTCATCAAAGGGTTTGTAAAG 59.737 38.462 0.00 0.00 41.36 1.85
1963 2043 4.321230 GGGTTTGTAAAGGATGCAGAACAG 60.321 45.833 0.00 0.00 0.00 3.16
2023 2103 1.476488 ACGTTGCTGAACCAAAAGCTT 59.524 42.857 0.00 0.00 40.21 3.74
2040 2120 1.271656 GCTTCTGCAGCTTGGAAATGT 59.728 47.619 9.47 0.00 46.27 2.71
2113 2193 0.874390 TTCGTCAACAGCTTGATGCC 59.126 50.000 3.15 0.00 41.52 4.40
2125 2205 2.733227 GCTTGATGCCATTTCCAAGTCG 60.733 50.000 6.51 0.00 38.50 4.18
2215 2295 3.837355 ACAAAGAGGCAAGGAACAATCT 58.163 40.909 0.00 0.00 0.00 2.40
2620 2700 7.330900 AGATTCTGAAATCCAGCAAATACAG 57.669 36.000 0.00 0.00 41.97 2.74
2674 2754 1.406903 CTTTTCCCATCCAGGCATCC 58.593 55.000 0.00 0.00 35.39 3.51
2720 2800 5.866335 TCATGCAAAGAAAATTGGAATGC 57.134 34.783 0.00 0.00 34.21 3.56
2732 2812 8.630917 AGAAAATTGGAATGCTAGAATCTGATG 58.369 33.333 0.00 0.00 0.00 3.07
2949 3029 1.743958 CAATGAGGAAAGGAGCTGCTG 59.256 52.381 9.14 0.00 0.00 4.41
3075 3156 2.092429 TGGGAGCAATGAAGGGTCATAC 60.092 50.000 0.00 0.00 44.02 2.39
3091 3172 5.878669 GGGTCATACGGATTTATTATCCCAC 59.121 44.000 0.00 0.00 34.76 4.61
3388 7350 4.319694 CGCATGACAAGTCTTGTTGAATCA 60.320 41.667 19.09 12.22 45.52 2.57
3389 7351 5.618418 CGCATGACAAGTCTTGTTGAATCAT 60.618 40.000 19.09 13.82 45.52 2.45
3396 7358 6.206243 ACAAGTCTTGTTGAATCATTGAGAGG 59.794 38.462 12.62 0.00 42.22 3.69
3469 7431 3.996150 CACAGTGAATCAAGGTGCTTT 57.004 42.857 0.00 0.00 0.00 3.51
3507 7469 6.770746 TCAGTACTGAGGATACCTGTTTAC 57.229 41.667 21.74 0.00 31.76 2.01
3610 7740 8.864024 CACAGTACTTATGACTATTCTGTGTTG 58.136 37.037 12.01 0.00 43.30 3.33
3611 7741 8.585881 ACAGTACTTATGACTATTCTGTGTTGT 58.414 33.333 0.00 0.00 34.36 3.32
3620 7750 8.981724 TGACTATTCTGTGTTGTACTTATGAC 57.018 34.615 0.00 0.00 0.00 3.06
3621 7751 8.033038 TGACTATTCTGTGTTGTACTTATGACC 58.967 37.037 0.00 0.00 0.00 4.02
3622 7752 7.328737 ACTATTCTGTGTTGTACTTATGACCC 58.671 38.462 0.00 0.00 0.00 4.46
3623 7753 5.818678 TTCTGTGTTGTACTTATGACCCT 57.181 39.130 0.00 0.00 0.00 4.34
3624 7754 5.818678 TCTGTGTTGTACTTATGACCCTT 57.181 39.130 0.00 0.00 0.00 3.95
3625 7755 5.790593 TCTGTGTTGTACTTATGACCCTTC 58.209 41.667 0.00 0.00 0.00 3.46
3626 7756 4.901868 TGTGTTGTACTTATGACCCTTCC 58.098 43.478 0.00 0.00 0.00 3.46
3627 7757 4.259356 GTGTTGTACTTATGACCCTTCCC 58.741 47.826 0.00 0.00 0.00 3.97
3628 7758 4.019591 GTGTTGTACTTATGACCCTTCCCT 60.020 45.833 0.00 0.00 0.00 4.20
3629 7759 4.019681 TGTTGTACTTATGACCCTTCCCTG 60.020 45.833 0.00 0.00 0.00 4.45
3630 7760 3.112263 TGTACTTATGACCCTTCCCTGG 58.888 50.000 0.00 0.00 0.00 4.45
3631 7761 2.661176 ACTTATGACCCTTCCCTGGA 57.339 50.000 0.00 0.00 0.00 3.86
3632 7762 2.197465 ACTTATGACCCTTCCCTGGAC 58.803 52.381 0.00 0.00 0.00 4.02
3633 7763 1.490910 CTTATGACCCTTCCCTGGACC 59.509 57.143 0.00 0.00 0.00 4.46
3634 7764 0.327191 TATGACCCTTCCCTGGACCC 60.327 60.000 0.00 0.00 0.00 4.46
3635 7765 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3636 7766 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3637 7767 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3638 7768 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3639 7769 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
4341 8483 0.033894 AAAACGGTTGTCCCACACCT 60.034 50.000 0.00 0.00 0.00 4.00
4557 8699 1.539827 GTGAGACCCACCCAAAAATCG 59.460 52.381 0.00 0.00 39.86 3.34
4694 8836 0.260523 GGTGGAGAGGGAGCTCTAGT 59.739 60.000 14.64 0.00 35.26 2.57
4762 8904 0.179156 CAAATGCAGCGGCGATTTCT 60.179 50.000 12.98 0.00 45.35 2.52
4764 8906 1.996786 AATGCAGCGGCGATTTCTGG 61.997 55.000 12.98 0.00 45.35 3.86
4944 9100 3.114616 CTCGCCTGTTGCACTCCG 61.115 66.667 0.00 0.00 41.33 4.63
4955 9111 2.347490 CACTCCGGTCAAGGTGGG 59.653 66.667 0.00 0.00 0.00 4.61
4964 9121 1.461268 TCAAGGTGGGTGAGCCTCA 60.461 57.895 1.06 0.00 33.24 3.86
5090 9433 3.966543 CACGGAGGTTGGGGCCTT 61.967 66.667 0.84 0.00 39.34 4.35
5091 9434 3.966543 ACGGAGGTTGGGGCCTTG 61.967 66.667 0.84 0.00 39.34 3.61
5556 10036 2.507992 CGGAGCTTGTCAGAGCCG 60.508 66.667 0.00 0.00 43.74 5.52
5557 10037 2.973899 GGAGCTTGTCAGAGCCGA 59.026 61.111 0.00 0.00 43.74 5.54
5558 10038 1.446966 GGAGCTTGTCAGAGCCGAC 60.447 63.158 0.00 0.00 43.74 4.79
5559 10039 1.446966 GAGCTTGTCAGAGCCGACC 60.447 63.158 0.00 0.00 43.74 4.79
5560 10040 2.159819 GAGCTTGTCAGAGCCGACCA 62.160 60.000 0.00 0.00 43.74 4.02
5561 10041 1.301716 GCTTGTCAGAGCCGACCAA 60.302 57.895 0.00 0.00 36.66 3.67
5915 11117 0.898326 GGCAAGTTAAGGGTGTGGGG 60.898 60.000 0.00 0.00 0.00 4.96
6181 11534 6.036300 CACATCAGCACAACAAAGTGAAATTT 59.964 34.615 0.00 0.00 42.05 1.82
6317 11670 2.576191 TGCAGTAGAAACCAAGGGCTAT 59.424 45.455 0.00 0.00 0.00 2.97
6383 11739 3.142174 GCTAGTCTTTGAGCACCTTGTT 58.858 45.455 0.00 0.00 38.62 2.83
6424 11780 4.237018 TGGTTACTGGTTAGTCCTTCCTT 58.763 43.478 0.00 0.00 38.36 3.36
6847 12798 1.274703 GGGGGCTTCATCTGAGGACA 61.275 60.000 0.00 0.00 29.53 4.02
6862 12813 1.873591 AGGACAGCTTACAAGTTTGCG 59.126 47.619 0.00 0.00 0.00 4.85
7015 12966 6.837568 TCCCTCCGTCCCATATAATATAAGAC 59.162 42.308 0.00 0.00 0.00 3.01
7033 12984 2.538449 AGACGCTTTTTGACACTACACG 59.462 45.455 0.00 0.00 0.00 4.49
7054 13005 6.537301 ACACGAGTGTCAAAAAGTCTTAATGA 59.463 34.615 2.62 0.00 40.24 2.57
7055 13006 7.065894 CACGAGTGTCAAAAAGTCTTAATGAG 58.934 38.462 0.00 0.00 0.00 2.90
7056 13007 6.984474 ACGAGTGTCAAAAAGTCTTAATGAGA 59.016 34.615 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.847956 TGGCTTTTTGAAACAATGAATCAG 57.152 33.333 0.00 0.00 0.00 2.90
1 2 7.046652 TCTTGGCTTTTTGAAACAATGAATCA 58.953 30.769 0.00 0.00 0.00 2.57
2 3 7.481275 TCTTGGCTTTTTGAAACAATGAATC 57.519 32.000 0.00 0.00 0.00 2.52
3 4 7.862512 TTCTTGGCTTTTTGAAACAATGAAT 57.137 28.000 0.00 0.00 0.00 2.57
4 5 7.626028 GCTTTCTTGGCTTTTTGAAACAATGAA 60.626 33.333 0.00 0.00 0.00 2.57
5 6 6.183360 GCTTTCTTGGCTTTTTGAAACAATGA 60.183 34.615 0.00 0.00 0.00 2.57
6 7 5.967088 GCTTTCTTGGCTTTTTGAAACAATG 59.033 36.000 0.00 0.00 0.00 2.82
7 8 5.220643 CGCTTTCTTGGCTTTTTGAAACAAT 60.221 36.000 0.00 0.00 0.00 2.71
8 9 4.092675 CGCTTTCTTGGCTTTTTGAAACAA 59.907 37.500 0.00 0.00 0.00 2.83
9 10 3.616379 CGCTTTCTTGGCTTTTTGAAACA 59.384 39.130 0.00 0.00 0.00 2.83
10 11 3.001228 CCGCTTTCTTGGCTTTTTGAAAC 59.999 43.478 0.00 0.00 0.00 2.78
11 12 3.194062 CCGCTTTCTTGGCTTTTTGAAA 58.806 40.909 0.00 0.00 0.00 2.69
12 13 2.482839 CCCGCTTTCTTGGCTTTTTGAA 60.483 45.455 0.00 0.00 0.00 2.69
13 14 1.068434 CCCGCTTTCTTGGCTTTTTGA 59.932 47.619 0.00 0.00 0.00 2.69
14 15 1.068434 TCCCGCTTTCTTGGCTTTTTG 59.932 47.619 0.00 0.00 0.00 2.44
15 16 1.408969 TCCCGCTTTCTTGGCTTTTT 58.591 45.000 0.00 0.00 0.00 1.94
16 17 1.408969 TTCCCGCTTTCTTGGCTTTT 58.591 45.000 0.00 0.00 0.00 2.27
17 18 1.408969 TTTCCCGCTTTCTTGGCTTT 58.591 45.000 0.00 0.00 0.00 3.51
18 19 1.408969 TTTTCCCGCTTTCTTGGCTT 58.591 45.000 0.00 0.00 0.00 4.35
19 20 1.546029 GATTTTCCCGCTTTCTTGGCT 59.454 47.619 0.00 0.00 0.00 4.75
20 21 1.272212 TGATTTTCCCGCTTTCTTGGC 59.728 47.619 0.00 0.00 0.00 4.52
21 22 3.874392 ATGATTTTCCCGCTTTCTTGG 57.126 42.857 0.00 0.00 0.00 3.61
22 23 5.286082 CGTTTATGATTTTCCCGCTTTCTTG 59.714 40.000 0.00 0.00 0.00 3.02
23 24 5.399013 CGTTTATGATTTTCCCGCTTTCTT 58.601 37.500 0.00 0.00 0.00 2.52
24 25 4.142469 CCGTTTATGATTTTCCCGCTTTCT 60.142 41.667 0.00 0.00 0.00 2.52
25 26 4.102649 CCGTTTATGATTTTCCCGCTTTC 58.897 43.478 0.00 0.00 0.00 2.62
26 27 3.674955 GCCGTTTATGATTTTCCCGCTTT 60.675 43.478 0.00 0.00 0.00 3.51
27 28 2.159296 GCCGTTTATGATTTTCCCGCTT 60.159 45.455 0.00 0.00 0.00 4.68
28 29 1.404035 GCCGTTTATGATTTTCCCGCT 59.596 47.619 0.00 0.00 0.00 5.52
29 30 1.133407 TGCCGTTTATGATTTTCCCGC 59.867 47.619 0.00 0.00 0.00 6.13
30 31 2.478879 GGTGCCGTTTATGATTTTCCCG 60.479 50.000 0.00 0.00 0.00 5.14
31 32 2.758423 AGGTGCCGTTTATGATTTTCCC 59.242 45.455 0.00 0.00 0.00 3.97
32 33 4.450082 AAGGTGCCGTTTATGATTTTCC 57.550 40.909 0.00 0.00 0.00 3.13
33 34 5.515270 GCTTAAGGTGCCGTTTATGATTTTC 59.485 40.000 4.29 0.00 0.00 2.29
34 35 5.407502 GCTTAAGGTGCCGTTTATGATTTT 58.592 37.500 4.29 0.00 0.00 1.82
35 36 4.438200 CGCTTAAGGTGCCGTTTATGATTT 60.438 41.667 4.29 0.00 0.00 2.17
36 37 3.064820 CGCTTAAGGTGCCGTTTATGATT 59.935 43.478 4.29 0.00 0.00 2.57
37 38 2.612212 CGCTTAAGGTGCCGTTTATGAT 59.388 45.455 4.29 0.00 0.00 2.45
38 39 2.004017 CGCTTAAGGTGCCGTTTATGA 58.996 47.619 4.29 0.00 0.00 2.15
39 40 1.531058 GCGCTTAAGGTGCCGTTTATG 60.531 52.381 0.00 0.00 44.87 1.90
40 41 0.730840 GCGCTTAAGGTGCCGTTTAT 59.269 50.000 0.00 0.00 44.87 1.40
41 42 2.164491 GCGCTTAAGGTGCCGTTTA 58.836 52.632 0.00 0.00 44.87 2.01
42 43 2.951458 GCGCTTAAGGTGCCGTTT 59.049 55.556 0.00 0.00 44.87 3.60
62 63 2.486592 CCTGTACCGGTTGGCTTTTAAG 59.513 50.000 15.04 0.00 39.70 1.85
63 64 2.506444 CCTGTACCGGTTGGCTTTTAA 58.494 47.619 15.04 0.00 39.70 1.52
64 65 1.271488 CCCTGTACCGGTTGGCTTTTA 60.271 52.381 15.04 0.00 39.70 1.52
65 66 0.538746 CCCTGTACCGGTTGGCTTTT 60.539 55.000 15.04 0.00 39.70 2.27
66 67 1.074248 CCCTGTACCGGTTGGCTTT 59.926 57.895 15.04 0.00 39.70 3.51
67 68 2.754375 CCCTGTACCGGTTGGCTT 59.246 61.111 15.04 0.00 39.70 4.35
68 69 4.029809 GCCCTGTACCGGTTGGCT 62.030 66.667 15.04 0.00 39.70 4.75
71 72 4.690719 TGCGCCCTGTACCGGTTG 62.691 66.667 15.04 3.36 0.00 3.77
72 73 3.943691 TTGCGCCCTGTACCGGTT 61.944 61.111 15.04 0.00 0.00 4.44
73 74 4.692475 GTTGCGCCCTGTACCGGT 62.692 66.667 13.98 13.98 0.00 5.28
83 84 0.754472 TAGTGTATAGGGGTTGCGCC 59.246 55.000 4.18 0.00 36.67 6.53
84 85 1.270147 CCTAGTGTATAGGGGTTGCGC 60.270 57.143 0.00 0.00 0.00 6.09
85 86 2.035576 GACCTAGTGTATAGGGGTTGCG 59.964 54.545 5.94 0.00 39.00 4.85
86 87 3.306613 AGACCTAGTGTATAGGGGTTGC 58.693 50.000 5.94 0.00 39.00 4.17
87 88 5.952347 AAAGACCTAGTGTATAGGGGTTG 57.048 43.478 5.94 0.00 39.00 3.77
88 89 6.099413 GCTAAAAGACCTAGTGTATAGGGGTT 59.901 42.308 5.94 0.00 39.00 4.11
89 90 5.601729 GCTAAAAGACCTAGTGTATAGGGGT 59.398 44.000 5.94 0.00 39.00 4.95
90 91 5.278858 CGCTAAAAGACCTAGTGTATAGGGG 60.279 48.000 5.94 0.00 39.00 4.79
91 92 5.533903 TCGCTAAAAGACCTAGTGTATAGGG 59.466 44.000 5.94 0.00 39.00 3.53
92 93 6.630444 TCGCTAAAAGACCTAGTGTATAGG 57.370 41.667 0.00 0.00 40.49 2.57
93 94 7.306953 GGATCGCTAAAAGACCTAGTGTATAG 58.693 42.308 0.00 0.00 0.00 1.31
94 95 6.072838 CGGATCGCTAAAAGACCTAGTGTATA 60.073 42.308 0.00 0.00 0.00 1.47
95 96 5.278364 CGGATCGCTAAAAGACCTAGTGTAT 60.278 44.000 0.00 0.00 0.00 2.29
96 97 4.036027 CGGATCGCTAAAAGACCTAGTGTA 59.964 45.833 0.00 0.00 0.00 2.90
97 98 3.181489 CGGATCGCTAAAAGACCTAGTGT 60.181 47.826 0.00 0.00 0.00 3.55
98 99 3.066342 TCGGATCGCTAAAAGACCTAGTG 59.934 47.826 0.00 0.00 0.00 2.74
99 100 3.066481 GTCGGATCGCTAAAAGACCTAGT 59.934 47.826 0.00 0.00 0.00 2.57
100 101 3.550436 GGTCGGATCGCTAAAAGACCTAG 60.550 52.174 5.30 0.00 43.34 3.02
101 102 2.360165 GGTCGGATCGCTAAAAGACCTA 59.640 50.000 5.30 0.00 43.34 3.08
102 103 1.136500 GGTCGGATCGCTAAAAGACCT 59.864 52.381 5.30 0.00 43.34 3.85
103 104 1.568606 GGTCGGATCGCTAAAAGACC 58.431 55.000 0.00 0.00 40.85 3.85
104 105 1.134907 TGGGTCGGATCGCTAAAAGAC 60.135 52.381 0.00 0.00 0.00 3.01
105 106 1.187974 TGGGTCGGATCGCTAAAAGA 58.812 50.000 0.00 0.00 0.00 2.52
106 107 2.240493 ATGGGTCGGATCGCTAAAAG 57.760 50.000 0.00 0.00 0.00 2.27
107 108 2.702592 AATGGGTCGGATCGCTAAAA 57.297 45.000 0.00 0.00 0.00 1.52
108 109 2.169769 AGAAATGGGTCGGATCGCTAAA 59.830 45.455 0.00 0.00 0.00 1.85
109 110 1.760613 AGAAATGGGTCGGATCGCTAA 59.239 47.619 0.00 0.00 0.00 3.09
110 111 1.410004 AGAAATGGGTCGGATCGCTA 58.590 50.000 0.00 0.00 0.00 4.26
111 112 0.541863 AAGAAATGGGTCGGATCGCT 59.458 50.000 0.00 0.00 0.00 4.93
112 113 0.938008 GAAGAAATGGGTCGGATCGC 59.062 55.000 0.00 0.00 0.00 4.58
113 114 2.101582 AGAGAAGAAATGGGTCGGATCG 59.898 50.000 0.00 0.00 0.00 3.69
114 115 3.386402 AGAGAGAAGAAATGGGTCGGATC 59.614 47.826 0.00 0.00 0.00 3.36
115 116 3.133721 CAGAGAGAAGAAATGGGTCGGAT 59.866 47.826 0.00 0.00 0.00 4.18
116 117 2.497675 CAGAGAGAAGAAATGGGTCGGA 59.502 50.000 0.00 0.00 0.00 4.55
117 118 2.234908 ACAGAGAGAAGAAATGGGTCGG 59.765 50.000 0.00 0.00 0.00 4.79
118 119 3.601443 ACAGAGAGAAGAAATGGGTCG 57.399 47.619 0.00 0.00 0.00 4.79
119 120 4.899502 TGAACAGAGAGAAGAAATGGGTC 58.100 43.478 0.00 0.00 0.00 4.46
120 121 4.982241 TGAACAGAGAGAAGAAATGGGT 57.018 40.909 0.00 0.00 0.00 4.51
121 122 6.830873 AAATGAACAGAGAGAAGAAATGGG 57.169 37.500 0.00 0.00 0.00 4.00
122 123 8.108551 AGAAAATGAACAGAGAGAAGAAATGG 57.891 34.615 0.00 0.00 0.00 3.16
123 124 9.609950 GAAGAAAATGAACAGAGAGAAGAAATG 57.390 33.333 0.00 0.00 0.00 2.32
124 125 9.571816 AGAAGAAAATGAACAGAGAGAAGAAAT 57.428 29.630 0.00 0.00 0.00 2.17
125 126 8.834465 CAGAAGAAAATGAACAGAGAGAAGAAA 58.166 33.333 0.00 0.00 0.00 2.52
126 127 7.041508 GCAGAAGAAAATGAACAGAGAGAAGAA 60.042 37.037 0.00 0.00 0.00 2.52
127 128 6.426328 GCAGAAGAAAATGAACAGAGAGAAGA 59.574 38.462 0.00 0.00 0.00 2.87
128 129 6.601264 GCAGAAGAAAATGAACAGAGAGAAG 58.399 40.000 0.00 0.00 0.00 2.85
129 130 5.178252 CGCAGAAGAAAATGAACAGAGAGAA 59.822 40.000 0.00 0.00 0.00 2.87
130 131 4.687948 CGCAGAAGAAAATGAACAGAGAGA 59.312 41.667 0.00 0.00 0.00 3.10
131 132 4.450419 ACGCAGAAGAAAATGAACAGAGAG 59.550 41.667 0.00 0.00 0.00 3.20
132 133 4.380531 ACGCAGAAGAAAATGAACAGAGA 58.619 39.130 0.00 0.00 0.00 3.10
133 134 4.739046 ACGCAGAAGAAAATGAACAGAG 57.261 40.909 0.00 0.00 0.00 3.35
134 135 5.499139 AAACGCAGAAGAAAATGAACAGA 57.501 34.783 0.00 0.00 0.00 3.41
135 136 4.676924 GGAAACGCAGAAGAAAATGAACAG 59.323 41.667 0.00 0.00 0.00 3.16
136 137 4.097135 TGGAAACGCAGAAGAAAATGAACA 59.903 37.500 0.00 0.00 0.00 3.18
137 138 4.441087 GTGGAAACGCAGAAGAAAATGAAC 59.559 41.667 0.00 0.00 41.67 3.18
138 139 4.606961 GTGGAAACGCAGAAGAAAATGAA 58.393 39.130 0.00 0.00 41.67 2.57
139 140 3.303725 CGTGGAAACGCAGAAGAAAATGA 60.304 43.478 0.00 0.00 42.37 2.57
140 141 2.973224 CGTGGAAACGCAGAAGAAAATG 59.027 45.455 0.00 0.00 42.37 2.32
141 142 2.616842 ACGTGGAAACGCAGAAGAAAAT 59.383 40.909 0.00 0.00 42.37 1.82
142 143 2.011222 ACGTGGAAACGCAGAAGAAAA 58.989 42.857 0.00 0.00 42.37 2.29
143 144 1.329292 CACGTGGAAACGCAGAAGAAA 59.671 47.619 7.95 0.00 42.37 2.52
144 145 0.934496 CACGTGGAAACGCAGAAGAA 59.066 50.000 7.95 0.00 42.37 2.52
145 146 0.878523 CCACGTGGAAACGCAGAAGA 60.879 55.000 31.31 0.00 42.37 2.87
146 147 1.569493 CCACGTGGAAACGCAGAAG 59.431 57.895 31.31 0.00 42.37 2.85
147 148 1.890041 CCCACGTGGAAACGCAGAA 60.890 57.895 36.07 0.00 42.37 3.02
148 149 2.280524 CCCACGTGGAAACGCAGA 60.281 61.111 36.07 0.00 42.37 4.26
149 150 1.720694 AAACCCACGTGGAAACGCAG 61.721 55.000 36.07 18.96 42.37 5.18
150 151 1.313812 AAAACCCACGTGGAAACGCA 61.314 50.000 36.07 0.00 42.37 5.24
151 152 0.593008 GAAAACCCACGTGGAAACGC 60.593 55.000 36.07 17.39 37.39 4.84
152 153 1.018910 AGAAAACCCACGTGGAAACG 58.981 50.000 36.07 20.85 37.39 3.60
153 154 2.944349 TGTAGAAAACCCACGTGGAAAC 59.056 45.455 36.07 19.90 37.39 2.78
154 155 3.278668 TGTAGAAAACCCACGTGGAAA 57.721 42.857 36.07 6.01 37.39 3.13
155 156 3.495434 ATGTAGAAAACCCACGTGGAA 57.505 42.857 36.07 8.80 37.39 3.53
156 157 3.495434 AATGTAGAAAACCCACGTGGA 57.505 42.857 36.07 12.94 37.39 4.02
157 158 4.277423 AGAAAATGTAGAAAACCCACGTGG 59.723 41.667 28.26 28.26 41.37 4.94
158 159 5.432885 AGAAAATGTAGAAAACCCACGTG 57.567 39.130 9.08 9.08 0.00 4.49
159 160 5.826208 AGAAGAAAATGTAGAAAACCCACGT 59.174 36.000 0.00 0.00 0.00 4.49
160 161 6.313744 AGAAGAAAATGTAGAAAACCCACG 57.686 37.500 0.00 0.00 0.00 4.94
215 216 9.729281 ATGAAAAAGGTTCATGCATTTAAGAAT 57.271 25.926 0.00 0.00 37.71 2.40
221 222 9.675464 ATCAATATGAAAAAGGTTCATGCATTT 57.325 25.926 10.99 0.00 39.30 2.32
222 223 9.675464 AATCAATATGAAAAAGGTTCATGCATT 57.325 25.926 10.99 2.58 39.30 3.56
292 293 9.761504 TGCAAAATAGTCATTGAAATTGAAGAA 57.238 25.926 0.00 0.00 0.00 2.52
293 294 9.761504 TTGCAAAATAGTCATTGAAATTGAAGA 57.238 25.926 0.00 0.00 0.00 2.87
296 297 9.545105 AGTTTGCAAAATAGTCATTGAAATTGA 57.455 25.926 14.67 0.00 0.00 2.57
297 298 9.801714 GAGTTTGCAAAATAGTCATTGAAATTG 57.198 29.630 14.67 0.00 0.00 2.32
298 299 8.702438 CGAGTTTGCAAAATAGTCATTGAAATT 58.298 29.630 14.67 0.00 0.00 1.82
299 300 8.081633 TCGAGTTTGCAAAATAGTCATTGAAAT 58.918 29.630 14.67 0.00 0.00 2.17
300 301 7.421599 TCGAGTTTGCAAAATAGTCATTGAAA 58.578 30.769 14.67 0.00 0.00 2.69
301 302 6.964908 TCGAGTTTGCAAAATAGTCATTGAA 58.035 32.000 14.67 0.00 0.00 2.69
302 303 6.552859 TCGAGTTTGCAAAATAGTCATTGA 57.447 33.333 14.67 0.46 0.00 2.57
303 304 7.022979 TCATCGAGTTTGCAAAATAGTCATTG 58.977 34.615 14.67 10.01 0.00 2.82
304 305 7.144722 TCATCGAGTTTGCAAAATAGTCATT 57.855 32.000 14.67 0.00 0.00 2.57
305 306 6.741992 TCATCGAGTTTGCAAAATAGTCAT 57.258 33.333 14.67 0.83 0.00 3.06
306 307 6.741992 ATCATCGAGTTTGCAAAATAGTCA 57.258 33.333 14.67 0.00 0.00 3.41
307 308 8.452989 AAAATCATCGAGTTTGCAAAATAGTC 57.547 30.769 14.67 7.63 28.65 2.59
308 309 8.816640 AAAAATCATCGAGTTTGCAAAATAGT 57.183 26.923 14.67 1.53 30.27 2.12
359 360 9.323985 TGAATTTGAAAAGATTTCACCGAATTT 57.676 25.926 5.09 0.00 0.00 1.82
360 361 8.885494 TGAATTTGAAAAGATTTCACCGAATT 57.115 26.923 5.09 8.70 0.00 2.17
361 362 8.885494 TTGAATTTGAAAAGATTTCACCGAAT 57.115 26.923 5.09 1.31 0.00 3.34
362 363 8.763356 CATTGAATTTGAAAAGATTTCACCGAA 58.237 29.630 5.09 0.00 0.00 4.30
363 364 8.140628 TCATTGAATTTGAAAAGATTTCACCGA 58.859 29.630 5.09 0.00 0.00 4.69
364 365 8.296799 TCATTGAATTTGAAAAGATTTCACCG 57.703 30.769 5.09 0.00 0.00 4.94
453 454 9.840427 CCGAACTTAAAACATGTTCAGATAAAT 57.160 29.630 12.39 0.00 39.92 1.40
454 455 7.806014 GCCGAACTTAAAACATGTTCAGATAAA 59.194 33.333 12.39 0.07 39.92 1.40
455 456 7.302524 GCCGAACTTAAAACATGTTCAGATAA 58.697 34.615 12.39 8.38 39.92 1.75
456 457 6.401688 CGCCGAACTTAAAACATGTTCAGATA 60.402 38.462 12.39 0.70 39.92 1.98
457 458 5.616866 CGCCGAACTTAAAACATGTTCAGAT 60.617 40.000 12.39 3.39 39.92 2.90
458 459 4.319190 CGCCGAACTTAAAACATGTTCAGA 60.319 41.667 12.39 0.00 39.92 3.27
459 460 3.906008 CGCCGAACTTAAAACATGTTCAG 59.094 43.478 12.39 10.73 39.92 3.02
460 461 3.560481 TCGCCGAACTTAAAACATGTTCA 59.440 39.130 12.39 0.00 39.92 3.18
461 462 4.136517 TCGCCGAACTTAAAACATGTTC 57.863 40.909 12.39 0.00 37.74 3.18
462 463 4.759516 ATCGCCGAACTTAAAACATGTT 57.240 36.364 4.92 4.92 0.00 2.71
463 464 4.759516 AATCGCCGAACTTAAAACATGT 57.240 36.364 0.00 0.00 0.00 3.21
464 465 6.446659 AAAAATCGCCGAACTTAAAACATG 57.553 33.333 0.00 0.00 0.00 3.21
511 512 8.953990 CGAACTTCTAAAACGTTCATGAATTTT 58.046 29.630 18.77 18.77 37.48 1.82
512 513 8.126700 ACGAACTTCTAAAACGTTCATGAATTT 58.873 29.630 12.12 10.68 37.48 1.82
513 514 7.586300 CACGAACTTCTAAAACGTTCATGAATT 59.414 33.333 12.12 4.34 34.01 2.17
514 515 7.042321 TCACGAACTTCTAAAACGTTCATGAAT 60.042 33.333 12.12 0.00 37.06 2.57
515 516 6.256104 TCACGAACTTCTAAAACGTTCATGAA 59.744 34.615 3.38 3.38 37.06 2.57
516 517 5.749588 TCACGAACTTCTAAAACGTTCATGA 59.250 36.000 0.00 0.00 37.48 3.07
517 518 5.969741 TCACGAACTTCTAAAACGTTCATG 58.030 37.500 0.00 0.00 37.48 3.07
518 519 6.036300 TGTTCACGAACTTCTAAAACGTTCAT 59.964 34.615 0.00 0.00 41.67 2.57
519 520 5.348179 TGTTCACGAACTTCTAAAACGTTCA 59.652 36.000 0.00 0.00 41.67 3.18
520 521 5.788467 TGTTCACGAACTTCTAAAACGTTC 58.212 37.500 0.00 0.00 41.67 3.95
521 522 5.783100 TGTTCACGAACTTCTAAAACGTT 57.217 34.783 11.01 0.00 41.67 3.99
522 523 5.978934 ATGTTCACGAACTTCTAAAACGT 57.021 34.783 11.01 0.00 41.67 3.99
523 524 7.659290 AAAATGTTCACGAACTTCTAAAACG 57.341 32.000 11.01 0.00 41.67 3.60
524 525 9.068008 TCAAAAATGTTCACGAACTTCTAAAAC 57.932 29.630 11.01 0.00 41.67 2.43
525 526 9.627395 TTCAAAAATGTTCACGAACTTCTAAAA 57.373 25.926 11.01 0.00 41.67 1.52
526 527 9.627395 TTTCAAAAATGTTCACGAACTTCTAAA 57.373 25.926 11.01 1.53 41.67 1.85
527 528 9.796120 ATTTCAAAAATGTTCACGAACTTCTAA 57.204 25.926 11.01 0.00 41.67 2.10
528 529 9.445786 GATTTCAAAAATGTTCACGAACTTCTA 57.554 29.630 11.01 0.00 41.67 2.10
529 530 7.973388 TGATTTCAAAAATGTTCACGAACTTCT 59.027 29.630 11.01 0.00 41.67 2.85
530 531 8.114359 TGATTTCAAAAATGTTCACGAACTTC 57.886 30.769 11.01 0.00 41.67 3.01
531 532 8.542132 CATGATTTCAAAAATGTTCACGAACTT 58.458 29.630 11.01 2.29 41.67 2.66
532 533 7.920151 TCATGATTTCAAAAATGTTCACGAACT 59.080 29.630 11.01 0.00 41.67 3.01
533 534 8.060020 TCATGATTTCAAAAATGTTCACGAAC 57.940 30.769 2.89 2.89 41.50 3.95
534 535 8.538856 GTTCATGATTTCAAAAATGTTCACGAA 58.461 29.630 0.00 0.00 0.00 3.85
535 536 7.920151 AGTTCATGATTTCAAAAATGTTCACGA 59.080 29.630 0.00 0.00 0.00 4.35
536 537 8.064447 AGTTCATGATTTCAAAAATGTTCACG 57.936 30.769 0.00 0.00 0.00 4.35
565 566 9.822185 ATGCTGAAGAAATAAAGTTTTGTCTTT 57.178 25.926 0.00 0.00 40.22 2.52
566 567 9.822185 AATGCTGAAGAAATAAAGTTTTGTCTT 57.178 25.926 0.00 0.86 0.00 3.01
567 568 9.822185 AAATGCTGAAGAAATAAAGTTTTGTCT 57.178 25.926 0.00 0.00 0.00 3.41
611 612 2.180769 CGCTCGATTGACCGGTCA 59.819 61.111 33.23 33.23 37.91 4.02
612 613 3.255379 GCGCTCGATTGACCGGTC 61.255 66.667 28.17 28.17 0.00 4.79
613 614 3.701604 GAGCGCTCGATTGACCGGT 62.702 63.158 23.61 6.92 36.68 5.28
614 615 2.956964 GAGCGCTCGATTGACCGG 60.957 66.667 23.61 0.00 0.00 5.28
624 625 0.579156 CATCTTAAAGGCGAGCGCTC 59.421 55.000 27.64 27.64 41.60 5.03
625 626 0.811616 CCATCTTAAAGGCGAGCGCT 60.812 55.000 11.27 11.27 41.60 5.92
626 627 1.643832 CCATCTTAAAGGCGAGCGC 59.356 57.895 6.27 6.27 41.06 5.92
627 628 1.776034 GCCCATCTTAAAGGCGAGCG 61.776 60.000 0.00 0.00 36.84 5.03
628 629 2.025719 GCCCATCTTAAAGGCGAGC 58.974 57.895 0.00 0.00 36.84 5.03
632 633 2.490148 GCGGGCCCATCTTAAAGGC 61.490 63.158 24.92 9.95 46.37 4.35
633 634 1.828224 GGCGGGCCCATCTTAAAGG 60.828 63.158 24.92 2.32 0.00 3.11
634 635 3.841870 GGCGGGCCCATCTTAAAG 58.158 61.111 24.92 3.18 0.00 1.85
666 667 3.479269 GAGAAACCGGCGCTCACG 61.479 66.667 7.64 1.64 44.07 4.35
667 668 3.119096 GGAGAAACCGGCGCTCAC 61.119 66.667 7.64 4.51 0.00 3.51
668 669 2.954684 ATGGAGAAACCGGCGCTCA 61.955 57.895 7.64 3.75 42.61 4.26
669 670 2.125106 ATGGAGAAACCGGCGCTC 60.125 61.111 7.64 5.74 42.61 5.03
670 671 2.436646 CATGGAGAAACCGGCGCT 60.437 61.111 7.64 0.00 42.61 5.92
671 672 2.746277 ACATGGAGAAACCGGCGC 60.746 61.111 0.00 0.00 42.61 6.53
672 673 2.398554 CCACATGGAGAAACCGGCG 61.399 63.158 0.00 0.00 42.61 6.46
673 674 2.700773 GCCACATGGAGAAACCGGC 61.701 63.158 0.00 0.00 42.61 6.13
674 675 2.046285 GGCCACATGGAGAAACCGG 61.046 63.158 0.00 0.00 42.61 5.28
675 676 2.046285 GGGCCACATGGAGAAACCG 61.046 63.158 4.39 0.00 42.61 4.44
676 677 1.682344 GGGGCCACATGGAGAAACC 60.682 63.158 4.39 0.00 37.39 3.27
677 678 0.967380 CTGGGGCCACATGGAGAAAC 60.967 60.000 8.98 0.00 37.39 2.78
678 679 1.383799 CTGGGGCCACATGGAGAAA 59.616 57.895 8.98 0.00 37.39 2.52
679 680 2.615465 CCTGGGGCCACATGGAGAA 61.615 63.158 8.98 0.00 37.39 2.87
680 681 3.016971 CCTGGGGCCACATGGAGA 61.017 66.667 8.98 0.00 37.39 3.71
681 682 4.133373 CCCTGGGGCCACATGGAG 62.133 72.222 24.22 3.89 37.39 3.86
695 696 2.452491 AACTCAGGCCCAACCCCT 60.452 61.111 0.00 0.00 40.58 4.79
696 697 2.283173 CAACTCAGGCCCAACCCC 60.283 66.667 0.00 0.00 40.58 4.95
960 1035 4.543590 ATCCCCGCAGAAGATATAACAG 57.456 45.455 0.00 0.00 0.00 3.16
1300 1379 3.434167 CCGAGAAAGGGACATGGATTGAT 60.434 47.826 0.00 0.00 0.00 2.57
1320 1399 2.094182 ACACCTGACTACATGCTAACCG 60.094 50.000 0.00 0.00 0.00 4.44
1457 1536 7.523709 GCTTTATCAATCAACCAACCAGAAAGA 60.524 37.037 0.00 0.00 0.00 2.52
1461 1540 5.324409 AGCTTTATCAATCAACCAACCAGA 58.676 37.500 0.00 0.00 0.00 3.86
1771 1851 0.747283 CTGGCACATCCAAGCTCTCC 60.747 60.000 0.00 0.00 46.01 3.71
1951 2031 3.879892 GACCTATTTCCTGTTCTGCATCC 59.120 47.826 0.00 0.00 0.00 3.51
1963 2043 1.403323 GCAAGCTGCTGACCTATTTCC 59.597 52.381 1.35 0.00 40.96 3.13
1984 2064 5.677319 ACGTTATCTCTTCATCCTTGGAA 57.323 39.130 0.00 0.00 0.00 3.53
2023 2103 2.156917 CTGACATTTCCAAGCTGCAGA 58.843 47.619 20.43 0.00 0.00 4.26
2040 2120 2.553028 CCCTCAGGCAAACTTAAGCTGA 60.553 50.000 1.29 6.03 0.00 4.26
2093 2173 1.400242 GGCATCAAGCTGTTGACGAAC 60.400 52.381 0.00 0.00 45.58 3.95
2125 2205 2.363683 CCCCACTCAGAATTCAAGAGC 58.636 52.381 21.16 0.00 32.71 4.09
2215 2295 7.776030 TCTTCCTTTGTTGTACCATTTCTACAA 59.224 33.333 0.00 0.00 32.77 2.41
2620 2700 4.396166 ACTTGATTATTAGTGGCAGCACAC 59.604 41.667 6.02 6.02 41.63 3.82
2674 2754 2.700371 TGGCTCTATGGATGTAGTGTGG 59.300 50.000 0.00 0.00 0.00 4.17
2720 2800 4.505922 GGCGTCTTCAACATCAGATTCTAG 59.494 45.833 0.00 0.00 0.00 2.43
2732 2812 2.471255 CCATCCTGGCGTCTTCAAC 58.529 57.895 0.00 0.00 0.00 3.18
2797 2877 7.095313 TGCAACCGTATTTCTATTTCGTTAACA 60.095 33.333 6.39 0.00 0.00 2.41
2949 3029 2.353889 TGTAGAGTCGATACCGCTTCAC 59.646 50.000 0.00 0.00 35.37 3.18
3075 3156 5.825679 TCAAGTTGGTGGGATAATAAATCCG 59.174 40.000 2.34 0.00 39.07 4.18
3388 7350 4.290722 ACCAGATTCTCAAACCCTCTCAAT 59.709 41.667 0.00 0.00 0.00 2.57
3389 7351 3.652869 ACCAGATTCTCAAACCCTCTCAA 59.347 43.478 0.00 0.00 0.00 3.02
3469 7431 7.155655 TCAGTACTGAATGCAATGCAAATAA 57.844 32.000 23.24 0.00 37.03 1.40
3507 7469 9.173939 CAGCAAGTAATCTAGTTTTCACAAAAG 57.826 33.333 0.00 0.00 0.00 2.27
3610 7740 3.134262 GTCCAGGGAAGGGTCATAAGTAC 59.866 52.174 0.00 0.00 0.00 2.73
3611 7741 3.381335 GTCCAGGGAAGGGTCATAAGTA 58.619 50.000 0.00 0.00 0.00 2.24
3612 7742 2.197465 GTCCAGGGAAGGGTCATAAGT 58.803 52.381 0.00 0.00 0.00 2.24
3613 7743 1.490910 GGTCCAGGGAAGGGTCATAAG 59.509 57.143 0.00 0.00 0.00 1.73
3614 7744 1.591768 GGTCCAGGGAAGGGTCATAA 58.408 55.000 0.00 0.00 0.00 1.90
3615 7745 0.327191 GGGTCCAGGGAAGGGTCATA 60.327 60.000 0.00 0.00 0.00 2.15
3616 7746 1.619669 GGGTCCAGGGAAGGGTCAT 60.620 63.158 0.00 0.00 0.00 3.06
3617 7747 2.204090 GGGTCCAGGGAAGGGTCA 60.204 66.667 0.00 0.00 0.00 4.02
3618 7748 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3619 7749 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3620 7750 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3621 7751 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3622 7752 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3634 7764 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3637 7767 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3638 7768 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3639 7769 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3640 7770 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3646 7776 2.918712 ATACCTGGTGCATGTAGCTC 57.081 50.000 10.23 0.00 45.94 4.09
3647 7777 3.200825 AGAAATACCTGGTGCATGTAGCT 59.799 43.478 10.23 0.00 45.94 3.32
3648 7778 3.313526 CAGAAATACCTGGTGCATGTAGC 59.686 47.826 10.23 6.00 45.96 3.58
3649 7779 4.333649 CACAGAAATACCTGGTGCATGTAG 59.666 45.833 10.23 0.00 38.44 2.74
3650 7780 4.019771 TCACAGAAATACCTGGTGCATGTA 60.020 41.667 10.23 0.00 38.44 2.29
3651 7781 3.084039 CACAGAAATACCTGGTGCATGT 58.916 45.455 10.23 4.53 38.44 3.21
3652 7782 3.346315 TCACAGAAATACCTGGTGCATG 58.654 45.455 10.23 3.90 38.44 4.06
3653 7783 3.719268 TCACAGAAATACCTGGTGCAT 57.281 42.857 10.23 0.00 38.44 3.96
3654 7784 3.500448 TTCACAGAAATACCTGGTGCA 57.500 42.857 10.23 0.00 38.44 4.57
3655 7785 5.066505 CCTTATTCACAGAAATACCTGGTGC 59.933 44.000 10.23 0.00 38.44 5.01
3656 7786 6.414732 TCCTTATTCACAGAAATACCTGGTG 58.585 40.000 10.23 0.00 38.44 4.17
3657 7787 6.636454 TCCTTATTCACAGAAATACCTGGT 57.364 37.500 4.05 4.05 38.44 4.00
3658 7788 6.488006 CCATCCTTATTCACAGAAATACCTGG 59.512 42.308 0.00 0.00 38.44 4.45
3659 7789 7.012704 CACCATCCTTATTCACAGAAATACCTG 59.987 40.741 0.00 0.00 39.93 4.00
3660 7790 7.056635 CACCATCCTTATTCACAGAAATACCT 58.943 38.462 0.00 0.00 0.00 3.08
3661 7791 6.828785 ACACCATCCTTATTCACAGAAATACC 59.171 38.462 0.00 0.00 0.00 2.73
3851 7981 8.900781 ACAGAAGCAATAAAGTATACTAGTCGA 58.099 33.333 5.65 0.00 0.00 4.20
4053 8192 4.072131 GCAAAACTGGAGAATAGTGGTCA 58.928 43.478 0.00 0.00 0.00 4.02
4193 8333 7.442062 CCTTAATGAAGAAACAAACCAGCAAAT 59.558 33.333 0.00 0.00 34.25 2.32
4591 8733 2.048597 CGGTAGCTGTTGTCGCCA 60.049 61.111 0.00 0.00 0.00 5.69
4694 8836 1.524961 CCGGATCAATTCCCCACGA 59.475 57.895 0.00 0.00 42.06 4.35
4762 8904 0.906756 CCTCTCCTCCAACTCTGCCA 60.907 60.000 0.00 0.00 0.00 4.92
4764 8906 1.621672 CCCCTCTCCTCCAACTCTGC 61.622 65.000 0.00 0.00 0.00 4.26
4900 9056 1.531128 CTCCTCTACCCGGCTACCC 60.531 68.421 0.00 0.00 0.00 3.69
4936 9092 2.425592 CACCTTGACCGGAGTGCA 59.574 61.111 9.46 0.00 0.00 4.57
4944 9100 2.034221 GGCTCACCCACCTTGACC 59.966 66.667 0.00 0.00 0.00 4.02
5010 9168 2.487532 AATCTCCGTACCCGAGGCG 61.488 63.158 5.10 0.00 35.63 5.52
5107 9450 2.639000 GCGCGCACAAAAACTCTGC 61.639 57.895 29.10 0.00 0.00 4.26
5470 9941 3.948473 GTCCTTTCCTTTCTTAGGGATGC 59.052 47.826 0.00 0.00 44.86 3.91
5496 9967 1.982395 CCACACCCGCTCCTCTGTA 60.982 63.158 0.00 0.00 0.00 2.74
5753 10596 3.737172 GTGGACATGCACCGTGGC 61.737 66.667 0.00 0.00 0.00 5.01
5915 11117 2.551032 CTGAGAACCCAAAACCGGTTAC 59.449 50.000 22.60 6.47 43.75 2.50
6181 11534 3.875134 CAGCTGATGTGAATGTGCATAGA 59.125 43.478 8.42 0.00 0.00 1.98
6222 11575 3.252554 TCAGGCCAATAAAACCAAGGT 57.747 42.857 5.01 0.00 0.00 3.50
6317 11670 0.173481 CAAGCTACTCTGCGCTACCA 59.827 55.000 9.73 0.00 34.96 3.25
6383 11739 1.002659 CATGGTTTGGGTGAGTCGGTA 59.997 52.381 0.00 0.00 0.00 4.02
6424 11780 1.401761 AGCATCACAGCCAAACACAA 58.598 45.000 0.00 0.00 34.23 3.33
6847 12798 1.264288 GACAGCGCAAACTTGTAAGCT 59.736 47.619 11.47 4.28 36.53 3.74
6862 12813 1.599542 GCTACAATCCCAATCGACAGC 59.400 52.381 0.00 0.00 0.00 4.40
6989 12940 7.014422 GTCTTATATTATATGGGACGGAGGGAG 59.986 44.444 0.00 0.00 0.00 4.30
7015 12966 2.538449 ACTCGTGTAGTGTCAAAAAGCG 59.462 45.455 0.00 0.00 36.93 4.68
7054 13005 0.822164 CCGTCCCATTAACTCCGTCT 59.178 55.000 0.00 0.00 0.00 4.18
7055 13006 0.819582 TCCGTCCCATTAACTCCGTC 59.180 55.000 0.00 0.00 0.00 4.79
7056 13007 0.822164 CTCCGTCCCATTAACTCCGT 59.178 55.000 0.00 0.00 0.00 4.69
7057 13008 0.104304 CCTCCGTCCCATTAACTCCG 59.896 60.000 0.00 0.00 0.00 4.63
7058 13009 0.468648 CCCTCCGTCCCATTAACTCC 59.531 60.000 0.00 0.00 0.00 3.85
7059 13010 1.413077 CTCCCTCCGTCCCATTAACTC 59.587 57.143 0.00 0.00 0.00 3.01
7060 13011 1.273666 ACTCCCTCCGTCCCATTAACT 60.274 52.381 0.00 0.00 0.00 2.24
7061 13012 1.201424 ACTCCCTCCGTCCCATTAAC 58.799 55.000 0.00 0.00 0.00 2.01
7062 13013 2.023695 ACTACTCCCTCCGTCCCATTAA 60.024 50.000 0.00 0.00 0.00 1.40
7063 13014 1.572415 ACTACTCCCTCCGTCCCATTA 59.428 52.381 0.00 0.00 0.00 1.90
7064 13015 0.338814 ACTACTCCCTCCGTCCCATT 59.661 55.000 0.00 0.00 0.00 3.16
7065 13016 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
7066 13017 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
7067 13018 2.378378 AATACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
7068 13019 5.859205 TTTAAATACTACTCCCTCCGTCC 57.141 43.478 0.00 0.00 0.00 4.79
7069 13020 6.097412 TCCTTTTAAATACTACTCCCTCCGTC 59.903 42.308 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.