Multiple sequence alignment - TraesCS3B01G194300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G194300 chr3B 100.000 7859 0 0 1 7859 214551622 214559480 0.000000e+00 14513.0
1 TraesCS3B01G194300 chr3B 82.857 175 24 6 3171 3343 523150281 523150451 1.370000e-32 152.0
2 TraesCS3B01G194300 chr3B 94.231 52 3 0 3069 3120 333469111 333469060 6.540000e-11 80.5
3 TraesCS3B01G194300 chr3A 92.296 5361 220 50 937 6218 165333668 165338914 0.000000e+00 7433.0
4 TraesCS3B01G194300 chr3A 92.111 469 27 5 6236 6697 165338903 165339368 0.000000e+00 652.0
5 TraesCS3B01G194300 chr3A 85.959 641 22 31 6760 7362 165339367 165339977 2.410000e-174 623.0
6 TraesCS3B01G194300 chr3A 84.839 620 33 22 132 724 165332676 165333261 1.140000e-157 568.0
7 TraesCS3B01G194300 chr3A 77.480 897 163 27 4969 5859 155418963 155418100 1.180000e-137 501.0
8 TraesCS3B01G194300 chr3A 94.660 206 3 3 7595 7799 165415817 165416015 5.920000e-81 313.0
9 TraesCS3B01G194300 chr3A 90.110 182 17 1 3 184 165332371 165332551 1.320000e-57 235.0
10 TraesCS3B01G194300 chr3A 90.714 140 10 2 7461 7600 165341581 165341717 4.840000e-42 183.0
11 TraesCS3B01G194300 chr3A 82.203 236 19 15 721 947 165333291 165333512 1.740000e-41 182.0
12 TraesCS3B01G194300 chr3A 94.340 106 6 0 7362 7467 165341063 165341168 6.310000e-36 163.0
13 TraesCS3B01G194300 chr3A 78.092 283 35 10 3069 3343 190091045 190091308 3.800000e-33 154.0
14 TraesCS3B01G194300 chr3A 77.580 281 37 10 3069 3343 190225459 190225719 6.350000e-31 147.0
15 TraesCS3B01G194300 chr3D 92.752 5077 226 52 1190 6218 147828798 147823816 0.000000e+00 7206.0
16 TraesCS3B01G194300 chr3D 93.290 462 23 6 6236 6697 147823827 147823374 0.000000e+00 675.0
17 TraesCS3B01G194300 chr3D 87.542 602 46 18 1 582 147830367 147829775 0.000000e+00 669.0
18 TraesCS3B01G194300 chr3D 87.411 421 29 16 721 1128 147829210 147828801 5.560000e-126 462.0
19 TraesCS3B01G194300 chr3D 95.437 263 9 2 7598 7859 147822246 147821986 4.390000e-112 416.0
20 TraesCS3B01G194300 chr3D 88.406 345 26 8 6798 7132 147823304 147822964 3.420000e-108 403.0
21 TraesCS3B01G194300 chr3D 90.256 195 9 4 7303 7495 147822646 147822460 6.090000e-61 246.0
22 TraesCS3B01G194300 chr3D 95.536 112 4 1 614 724 147829351 147829240 2.250000e-40 178.0
23 TraesCS3B01G194300 chr3D 77.739 283 36 10 3069 3343 161398314 161398577 1.770000e-31 148.0
24 TraesCS3B01G194300 chr4B 81.094 1846 259 51 4298 6112 73482740 73484526 0.000000e+00 1393.0
25 TraesCS3B01G194300 chr4B 88.587 184 20 1 4087 4269 73482574 73482757 1.030000e-53 222.0
26 TraesCS3B01G194300 chr4B 92.500 40 2 1 3352 3391 149037257 149037219 1.000000e-03 56.5
27 TraesCS3B01G194300 chr5B 79.561 1639 220 66 4304 5915 82239179 82237629 0.000000e+00 1064.0
28 TraesCS3B01G194300 chr5B 81.685 819 100 27 2118 2918 82240842 82240056 3.090000e-178 636.0
29 TraesCS3B01G194300 chr5B 89.326 178 17 2 3170 3346 534338490 534338314 1.030000e-53 222.0
30 TraesCS3B01G194300 chr5B 97.561 41 1 0 6721 6761 382381303 382381343 3.930000e-08 71.3
31 TraesCS3B01G194300 chr5B 97.561 41 1 0 3080 3120 596503430 596503470 3.930000e-08 71.3
32 TraesCS3B01G194300 chr5D 79.440 1644 212 78 4298 5915 72213795 72215338 0.000000e+00 1048.0
33 TraesCS3B01G194300 chr5D 82.396 818 97 24 2118 2918 72212140 72212927 0.000000e+00 669.0
34 TraesCS3B01G194300 chr5D 84.541 414 48 9 3378 3779 72213049 72213458 5.720000e-106 396.0
35 TraesCS3B01G194300 chr5D 88.482 191 18 3 3171 3358 439665898 439665709 2.210000e-55 228.0
36 TraesCS3B01G194300 chr5D 93.023 43 2 1 3346 3387 191930717 191930759 2.370000e-05 62.1
37 TraesCS3B01G194300 chr5A 79.405 1646 215 78 4298 5915 64758432 64759981 0.000000e+00 1048.0
38 TraesCS3B01G194300 chr5A 82.288 813 97 22 2122 2918 64756751 64757532 0.000000e+00 660.0
39 TraesCS3B01G194300 chr5A 86.339 183 20 5 3378 3558 64757657 64757836 2.240000e-45 195.0
40 TraesCS3B01G194300 chr5A 85.492 193 16 7 3171 3358 555557539 555557354 2.890000e-44 191.0
41 TraesCS3B01G194300 chr5A 97.674 43 1 0 3079 3121 493354822 493354780 3.040000e-09 75.0
42 TraesCS3B01G194300 chr5A 100.000 31 0 0 3356 3386 606906105 606906075 3.060000e-04 58.4
43 TraesCS3B01G194300 chr1D 78.785 1136 188 40 4760 5875 31333170 31332068 0.000000e+00 713.0
44 TraesCS3B01G194300 chr1D 86.780 295 34 4 2626 2918 105159961 105159670 2.740000e-84 324.0
45 TraesCS3B01G194300 chr1D 84.451 328 41 8 2458 2776 105968815 105968489 1.650000e-81 315.0
46 TraesCS3B01G194300 chr1D 77.677 551 91 23 5040 5584 31345823 31345299 2.750000e-79 307.0
47 TraesCS3B01G194300 chr1D 84.281 299 42 5 5033 5328 31327966 31327670 3.590000e-73 287.0
48 TraesCS3B01G194300 chr1D 82.822 326 44 10 2458 2776 105352839 105352519 1.670000e-71 281.0
49 TraesCS3B01G194300 chr1D 78.068 383 71 7 3408 3782 105352056 105351679 6.130000e-56 230.0
50 TraesCS3B01G194300 chr1D 89.610 77 8 0 2441 2517 105160037 105159961 1.800000e-16 99.0
51 TraesCS3B01G194300 chr1B 77.892 778 133 22 4925 5683 604145997 604145240 1.560000e-121 448.0
52 TraesCS3B01G194300 chr1B 87.415 294 35 2 2626 2917 161498234 161498527 3.510000e-88 337.0
53 TraesCS3B01G194300 chr1B 87.415 294 35 2 2626 2917 161541530 161541823 3.510000e-88 337.0
54 TraesCS3B01G194300 chr1B 87.762 286 33 2 2626 2909 161584431 161584716 4.540000e-87 333.0
55 TraesCS3B01G194300 chr1B 91.304 69 5 1 6694 6761 487679428 487679360 8.400000e-15 93.5
56 TraesCS3B01G194300 chr1B 93.478 46 3 0 3349 3394 12787768 12787723 1.420000e-07 69.4
57 TraesCS3B01G194300 chr1A 78.057 597 81 30 4559 5137 30636727 30636163 1.630000e-86 331.0
58 TraesCS3B01G194300 chr1A 79.279 222 36 7 2441 2656 30642751 30642534 6.350000e-31 147.0
59 TraesCS3B01G194300 chr7D 81.223 229 24 14 3073 3286 566469471 566469695 4.880000e-37 167.0
60 TraesCS3B01G194300 chr7D 92.727 55 4 0 6696 6750 106798729 106798675 6.540000e-11 80.5
61 TraesCS3B01G194300 chr7D 95.122 41 1 1 6721 6761 26731131 26731170 6.580000e-06 63.9
62 TraesCS3B01G194300 chr2A 81.731 208 29 8 3189 3389 753597264 753597059 1.750000e-36 165.0
63 TraesCS3B01G194300 chr2A 93.182 44 2 1 6718 6761 89451490 89451532 6.580000e-06 63.9
64 TraesCS3B01G194300 chr6D 93.243 74 5 0 6688 6761 8551026 8551099 8.340000e-20 110.0
65 TraesCS3B01G194300 chr6D 97.436 39 1 0 6134 6172 376632576 376632538 5.090000e-07 67.6
66 TraesCS3B01G194300 chr2B 81.250 144 8 13 3069 3198 226691291 226691153 1.800000e-16 99.0
67 TraesCS3B01G194300 chr2B 95.122 41 2 0 6721 6761 48871851 48871811 1.830000e-06 65.8
68 TraesCS3B01G194300 chr2B 88.679 53 2 4 3353 3403 278859856 278859806 2.370000e-05 62.1
69 TraesCS3B01G194300 chr2B 79.381 97 8 8 6684 6769 168852032 168851937 3.060000e-04 58.4
70 TraesCS3B01G194300 chr2B 96.970 33 1 0 6687 6719 799161046 799161078 1.000000e-03 56.5
71 TraesCS3B01G194300 chr2B 96.970 33 1 0 6687 6719 799214202 799214234 1.000000e-03 56.5
72 TraesCS3B01G194300 chr7B 76.016 246 24 19 3073 3286 620680930 620680688 2.330000e-15 95.3
73 TraesCS3B01G194300 chr7B 94.595 37 1 1 6685 6721 726287467 726287502 1.000000e-03 56.5
74 TraesCS3B01G194300 chr2D 79.592 147 11 8 3069 3198 170621993 170622137 3.910000e-13 87.9
75 TraesCS3B01G194300 chr2D 97.143 35 0 1 3353 3386 586782164 586782198 3.060000e-04 58.4
76 TraesCS3B01G194300 chr4A 92.157 51 3 1 6721 6771 741977242 741977291 3.930000e-08 71.3
77 TraesCS3B01G194300 chr4A 93.182 44 2 1 6718 6761 68291213 68291255 6.580000e-06 63.9
78 TraesCS3B01G194300 chr6B 100.000 32 0 0 6688 6719 657249942 657249973 8.520000e-05 60.2
79 TraesCS3B01G194300 chrUn 96.970 33 1 0 6687 6719 23900844 23900876 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G194300 chr3B 214551622 214559480 7858 False 14513.000000 14513 100.000000 1 7859 1 chr3B.!!$F1 7858
1 TraesCS3B01G194300 chr3A 165332371 165341717 9346 False 1254.875000 7433 89.071500 3 7600 8 chr3A.!!$F4 7597
2 TraesCS3B01G194300 chr3A 155418100 155418963 863 True 501.000000 501 77.480000 4969 5859 1 chr3A.!!$R1 890
3 TraesCS3B01G194300 chr3D 147821986 147830367 8381 True 1281.875000 7206 91.328750 1 7859 8 chr3D.!!$R1 7858
4 TraesCS3B01G194300 chr4B 73482574 73484526 1952 False 807.500000 1393 84.840500 4087 6112 2 chr4B.!!$F1 2025
5 TraesCS3B01G194300 chr5B 82237629 82240842 3213 True 850.000000 1064 80.623000 2118 5915 2 chr5B.!!$R2 3797
6 TraesCS3B01G194300 chr5D 72212140 72215338 3198 False 704.333333 1048 82.125667 2118 5915 3 chr5D.!!$F2 3797
7 TraesCS3B01G194300 chr5A 64756751 64759981 3230 False 634.333333 1048 82.677333 2122 5915 3 chr5A.!!$F1 3793
8 TraesCS3B01G194300 chr1D 31332068 31333170 1102 True 713.000000 713 78.785000 4760 5875 1 chr1D.!!$R2 1115
9 TraesCS3B01G194300 chr1D 31345299 31345823 524 True 307.000000 307 77.677000 5040 5584 1 chr1D.!!$R3 544
10 TraesCS3B01G194300 chr1D 105351679 105352839 1160 True 255.500000 281 80.445000 2458 3782 2 chr1D.!!$R6 1324
11 TraesCS3B01G194300 chr1B 604145240 604145997 757 True 448.000000 448 77.892000 4925 5683 1 chr1B.!!$R3 758
12 TraesCS3B01G194300 chr1A 30636163 30636727 564 True 331.000000 331 78.057000 4559 5137 1 chr1A.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 1304 0.107214 TCAATCTTCATCCCACCGGC 60.107 55.000 0.00 0.00 0.00 6.13 F
1427 2246 0.251916 TCAATTCGCCGATGTCCCTT 59.748 50.000 0.00 0.00 0.00 3.95 F
1742 2581 0.373716 GGATTGTTGTCCGCATCGAC 59.626 55.000 0.00 0.00 0.00 4.20 F
2341 3194 0.455410 TTGTATGCAGATTTGGCGCC 59.545 50.000 22.73 22.73 0.00 6.53 F
3165 4248 0.682209 ACCACATGCAAGCCCTCATC 60.682 55.000 0.00 0.00 0.00 2.92 F
3198 4281 2.238646 AGCCCTCCACGTCATCAATTTA 59.761 45.455 0.00 0.00 0.00 1.40 F
4267 5463 3.391296 AGTCCAGCTCCTGTCAACTTTTA 59.609 43.478 0.00 0.00 0.00 1.52 F
6206 7526 0.472044 TGCTGTCCAACAGGCTACAA 59.528 50.000 9.01 0.00 46.01 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 2383 0.108520 AAATCTGCATTTGGCTGCCG 60.109 50.000 14.98 0.00 45.15 5.69 R
3139 4215 0.319813 GCTTGCATGTGGTGGGAAAC 60.320 55.000 1.14 0.00 0.00 2.78 R
3165 4248 1.214589 GAGGGCTTGCATGTGCTTG 59.785 57.895 6.55 0.57 42.66 4.01 R
3997 5147 1.242076 AGGTCTGCACACTTGATTGC 58.758 50.000 0.00 0.00 39.33 3.56 R
4325 5524 2.346803 CCCGACACACAATTAGACTGG 58.653 52.381 0.00 0.00 0.00 4.00 R
4480 5686 2.687425 TGCCGCATGTATTTAGCAATGT 59.313 40.909 0.00 0.00 0.00 2.71 R
6224 7544 1.345089 TGGGTGATTTCTCCGTTTCGA 59.655 47.619 0.00 0.00 0.00 3.71 R
7463 10493 0.104120 TGGCACTGATTATCCGTCCG 59.896 55.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.469200 CCTGTATTTGTTCACAATACATCCAAT 58.531 33.333 6.07 0.00 35.55 3.16
54 55 5.632764 TGTTCACAATACATCCAATTTTGCG 59.367 36.000 0.00 0.00 0.00 4.85
107 108 6.270000 TCTTTCCTGTGTCTAGAGATTTTCCA 59.730 38.462 0.00 0.00 0.00 3.53
112 113 6.314896 CCTGTGTCTAGAGATTTTCCATTGAC 59.685 42.308 0.00 0.00 0.00 3.18
158 159 0.520619 GTGCTACTAAAAAGCGGCGC 60.521 55.000 26.86 26.86 43.11 6.53
184 185 3.654414 GGTTGATCATCCGGTACTGATC 58.346 50.000 24.72 24.72 45.18 2.92
190 191 4.336889 TCATCCGGTACTGATCATTTCC 57.663 45.455 2.31 0.00 27.15 3.13
191 192 3.967326 TCATCCGGTACTGATCATTTCCT 59.033 43.478 2.31 0.00 27.15 3.36
192 193 4.408921 TCATCCGGTACTGATCATTTCCTT 59.591 41.667 2.31 0.00 27.15 3.36
197 198 6.765989 TCCGGTACTGATCATTTCCTTTTATG 59.234 38.462 2.31 0.00 0.00 1.90
199 200 7.713507 CCGGTACTGATCATTTCCTTTTATGTA 59.286 37.037 2.31 0.00 0.00 2.29
250 437 4.766891 GTCCATCATTTCCTTTTCTGTGGA 59.233 41.667 0.00 0.00 0.00 4.02
265 452 9.323985 CTTTTCTGTGGATAGAGATTTTCCTAG 57.676 37.037 0.00 0.00 0.00 3.02
288 475 5.299531 AGCACTACTAGTTGCTTCGATGATA 59.700 40.000 14.96 0.00 31.73 2.15
344 531 0.179145 ATCCTTCTAACACCGCGACG 60.179 55.000 8.23 0.00 0.00 5.12
418 605 5.128919 AGCATCAGCCTCTAATAAAAGTGG 58.871 41.667 0.00 0.00 43.56 4.00
422 609 7.254932 GCATCAGCCTCTAATAAAAGTGGTAAG 60.255 40.741 0.00 0.00 33.53 2.34
476 681 2.416547 CGTCCATACAGCTGAAAACCTG 59.583 50.000 23.35 7.71 35.26 4.00
532 737 1.736645 CGAAACTCGCCATCCACGT 60.737 57.895 0.00 0.00 31.14 4.49
553 758 1.224592 CCCTGCCGCAGAAACCTAT 59.775 57.895 22.35 0.00 32.44 2.57
567 772 0.314302 ACCTATCGGCGGAAATCGAG 59.686 55.000 7.21 0.00 42.43 4.04
591 796 3.133003 ACGAGACTGGAATGGATTCGAAT 59.867 43.478 11.20 11.20 37.67 3.34
603 808 2.576615 GATTCGAATGGGGGAGGAAAG 58.423 52.381 16.96 0.00 0.00 2.62
604 809 0.623723 TTCGAATGGGGGAGGAAAGG 59.376 55.000 0.00 0.00 0.00 3.11
605 810 1.227383 CGAATGGGGGAGGAAAGGG 59.773 63.158 0.00 0.00 0.00 3.95
606 811 1.279025 CGAATGGGGGAGGAAAGGGA 61.279 60.000 0.00 0.00 0.00 4.20
607 812 0.259065 GAATGGGGGAGGAAAGGGAC 59.741 60.000 0.00 0.00 0.00 4.46
608 813 1.571773 AATGGGGGAGGAAAGGGACG 61.572 60.000 0.00 0.00 0.00 4.79
609 814 3.408853 GGGGGAGGAAAGGGACGG 61.409 72.222 0.00 0.00 0.00 4.79
610 815 4.111053 GGGGAGGAAAGGGACGGC 62.111 72.222 0.00 0.00 0.00 5.68
611 816 4.468689 GGGAGGAAAGGGACGGCG 62.469 72.222 4.80 4.80 0.00 6.46
612 817 4.468689 GGAGGAAAGGGACGGCGG 62.469 72.222 13.24 0.00 0.00 6.13
629 1227 2.123428 GGCGCGGGAGTACCTCTTA 61.123 63.158 8.83 0.00 36.97 2.10
706 1304 0.107214 TCAATCTTCATCCCACCGGC 60.107 55.000 0.00 0.00 0.00 6.13
746 1377 0.636647 GGATTTGGGGGAGATGGGTT 59.363 55.000 0.00 0.00 0.00 4.11
777 1408 1.272480 CCCTCCCAAACCTTAACCTGG 60.272 57.143 0.00 0.00 0.00 4.45
802 1433 2.738521 CCGAACTGAGGTGCCGTG 60.739 66.667 0.00 0.00 0.00 4.94
803 1434 2.738521 CGAACTGAGGTGCCGTGG 60.739 66.667 0.00 0.00 0.00 4.94
804 1435 3.050275 GAACTGAGGTGCCGTGGC 61.050 66.667 3.30 3.30 42.35 5.01
806 1437 3.537206 AACTGAGGTGCCGTGGCTC 62.537 63.158 12.84 8.48 42.51 4.70
852 1485 2.856032 CGAAGCTGCAACAGACCG 59.144 61.111 1.02 0.00 32.44 4.79
853 1486 2.558313 GAAGCTGCAACAGACCGC 59.442 61.111 1.02 0.00 32.44 5.68
856 1489 4.030452 GCTGCAACAGACCGCCAC 62.030 66.667 0.00 0.00 32.44 5.01
857 1490 3.357079 CTGCAACAGACCGCCACC 61.357 66.667 0.00 0.00 32.44 4.61
858 1491 4.182433 TGCAACAGACCGCCACCA 62.182 61.111 0.00 0.00 0.00 4.17
859 1492 3.660111 GCAACAGACCGCCACCAC 61.660 66.667 0.00 0.00 0.00 4.16
861 1494 3.168528 AACAGACCGCCACCACCT 61.169 61.111 0.00 0.00 0.00 4.00
862 1495 3.476031 AACAGACCGCCACCACCTG 62.476 63.158 0.00 0.00 0.00 4.00
865 1498 4.947147 GACCGCCACCACCTGCAA 62.947 66.667 0.00 0.00 0.00 4.08
905 1546 1.812922 GACTGCGGCCTGATGAGTG 60.813 63.158 0.00 0.00 0.00 3.51
906 1547 3.200593 CTGCGGCCTGATGAGTGC 61.201 66.667 0.00 0.00 0.00 4.40
907 1548 3.963687 CTGCGGCCTGATGAGTGCA 62.964 63.158 0.00 0.00 0.00 4.57
908 1549 2.747460 GCGGCCTGATGAGTGCAA 60.747 61.111 0.00 0.00 0.00 4.08
909 1550 2.758089 GCGGCCTGATGAGTGCAAG 61.758 63.158 0.00 0.00 0.00 4.01
910 1551 2.758089 CGGCCTGATGAGTGCAAGC 61.758 63.158 0.00 0.00 0.00 4.01
911 1552 2.758089 GGCCTGATGAGTGCAAGCG 61.758 63.158 0.00 0.00 0.00 4.68
912 1553 2.758089 GCCTGATGAGTGCAAGCGG 61.758 63.158 0.00 0.00 0.00 5.52
913 1554 2.758089 CCTGATGAGTGCAAGCGGC 61.758 63.158 0.00 0.00 45.13 6.53
914 1555 2.747460 TGATGAGTGCAAGCGGCC 60.747 61.111 0.00 0.00 43.89 6.13
915 1556 3.512516 GATGAGTGCAAGCGGCCC 61.513 66.667 0.00 0.00 43.89 5.80
916 1557 3.984193 GATGAGTGCAAGCGGCCCT 62.984 63.158 0.00 0.00 43.89 5.19
917 1558 3.574074 ATGAGTGCAAGCGGCCCTT 62.574 57.895 0.00 0.00 43.89 3.95
921 1562 3.640407 TGCAAGCGGCCCTTCTCT 61.640 61.111 0.00 0.00 43.89 3.10
935 1576 4.565022 CCCTTCTCTTCTGTTTCTGAGAC 58.435 47.826 0.00 0.00 35.60 3.36
938 1579 4.757799 TCTCTTCTGTTTCTGAGACTCG 57.242 45.455 0.00 0.00 31.53 4.18
947 1588 6.868864 TCTGTTTCTGAGACTCGGATAAAAAG 59.131 38.462 14.79 11.24 30.80 2.27
949 1590 5.995565 TTCTGAGACTCGGATAAAAAGGA 57.004 39.130 14.79 0.00 30.80 3.36
950 1591 5.326200 TCTGAGACTCGGATAAAAAGGAC 57.674 43.478 10.07 0.00 0.00 3.85
951 1592 5.017490 TCTGAGACTCGGATAAAAAGGACT 58.983 41.667 10.07 0.00 0.00 3.85
953 1594 3.863041 AGACTCGGATAAAAAGGACTGC 58.137 45.455 0.00 0.00 0.00 4.40
954 1595 3.260884 AGACTCGGATAAAAAGGACTGCA 59.739 43.478 0.00 0.00 0.00 4.41
972 1780 4.081420 ACTGCACAAGTTCAGATAGTAGGG 60.081 45.833 6.85 0.00 34.57 3.53
973 1781 3.838317 TGCACAAGTTCAGATAGTAGGGT 59.162 43.478 0.00 0.00 0.00 4.34
975 1783 4.680975 GCACAAGTTCAGATAGTAGGGTCC 60.681 50.000 0.00 0.00 0.00 4.46
976 1784 4.712337 CACAAGTTCAGATAGTAGGGTCCT 59.288 45.833 0.00 0.00 0.00 3.85
1112 1928 1.221781 AGCTATAGAGTTCCTGCCCCT 59.778 52.381 3.21 0.00 0.00 4.79
1113 1929 1.621317 GCTATAGAGTTCCTGCCCCTC 59.379 57.143 3.21 0.00 0.00 4.30
1145 1961 3.382865 TCTCTGAATCGATCCAAGACCAG 59.617 47.826 0.00 0.00 0.00 4.00
1193 2009 2.757868 CTCCAGACTCCAGATTCGAAGT 59.242 50.000 3.35 0.00 0.00 3.01
1261 2077 2.290008 TGGACACGGTTAGGTACGTCTA 60.290 50.000 0.00 0.00 42.04 2.59
1270 2086 4.497300 GTTAGGTACGTCTACATGCCAAA 58.503 43.478 0.00 0.00 0.00 3.28
1279 2095 4.497300 GTCTACATGCCAAATTGCAATGT 58.503 39.130 13.82 3.97 45.84 2.71
1299 2115 1.269448 TCCTGTTCTTTTTCCATGCGC 59.731 47.619 0.00 0.00 0.00 6.09
1316 2132 1.436336 GCCCGCACGACTACTGTAT 59.564 57.895 0.00 0.00 0.00 2.29
1317 2133 0.870307 GCCCGCACGACTACTGTATG 60.870 60.000 0.00 0.00 0.00 2.39
1330 2149 7.148255 ACGACTACTGTATGTAACCAATAACGA 60.148 37.037 0.00 0.00 0.00 3.85
1341 2160 2.482721 ACCAATAACGAAGCAACGGAAG 59.517 45.455 7.39 0.00 37.61 3.46
1355 2174 1.221466 CGGAAGTTCAACGCTCAGCA 61.221 55.000 5.01 0.00 0.00 4.41
1369 2188 3.572584 GCTCAGCATTCAAACAGAAAGG 58.427 45.455 0.00 0.00 40.22 3.11
1380 2199 3.843893 AACAGAAAGGGCAAAAGCATT 57.156 38.095 0.00 0.00 0.00 3.56
1405 2224 6.551385 CAATGTCCTATTGCTGATTCCTAC 57.449 41.667 0.00 0.00 0.00 3.18
1426 2245 0.462047 GTCAATTCGCCGATGTCCCT 60.462 55.000 0.00 0.00 0.00 4.20
1427 2246 0.251916 TCAATTCGCCGATGTCCCTT 59.748 50.000 0.00 0.00 0.00 3.95
1428 2247 0.657840 CAATTCGCCGATGTCCCTTC 59.342 55.000 0.00 0.00 0.00 3.46
1429 2248 0.463833 AATTCGCCGATGTCCCTTCC 60.464 55.000 0.00 0.00 0.00 3.46
1442 2281 1.854939 TCCCTTCCTGTATCGGTAGGA 59.145 52.381 4.31 0.00 42.47 2.94
1464 2303 5.944007 GGATGGGTGTTTGACAGTAGTAATT 59.056 40.000 0.00 0.00 0.00 1.40
1472 2311 9.434559 GTGTTTGACAGTAGTAATTTCAACTTC 57.565 33.333 0.00 0.00 0.00 3.01
1478 2317 8.535690 ACAGTAGTAATTTCAACTTCACTAGC 57.464 34.615 0.00 0.00 0.00 3.42
1482 2321 7.426929 AGTAATTTCAACTTCACTAGCACAG 57.573 36.000 0.00 0.00 0.00 3.66
1486 2325 2.965831 TCAACTTCACTAGCACAGTCCT 59.034 45.455 0.00 0.00 34.26 3.85
1539 2378 9.046296 AGCTAGTTTATGATAGCAAATGTACAC 57.954 33.333 0.00 0.00 45.54 2.90
1544 2383 9.072294 GTTTATGATAGCAAATGTACACAAACC 57.928 33.333 0.00 0.00 0.00 3.27
1549 2388 2.660490 CAAATGTACACAAACCGGCAG 58.340 47.619 0.00 0.00 0.00 4.85
1552 2391 1.894756 GTACACAAACCGGCAGCCA 60.895 57.895 13.30 0.00 0.00 4.75
1599 2438 8.259411 TCAAAAATCTATACCGCCACTTTACTA 58.741 33.333 0.00 0.00 0.00 1.82
1600 2439 9.052759 CAAAAATCTATACCGCCACTTTACTAT 57.947 33.333 0.00 0.00 0.00 2.12
1611 2450 7.441458 ACCGCCACTTTACTATATGATTTTCTC 59.559 37.037 0.00 0.00 0.00 2.87
1648 2487 3.795101 AGAACACGTTTCTTGTAGTGTCG 59.205 43.478 7.04 0.00 45.74 4.35
1658 2497 1.153429 GTAGTGTCGGGTGATGGCC 60.153 63.158 0.00 0.00 0.00 5.36
1664 2503 2.034066 CGGGTGATGGCCAACAGT 59.966 61.111 17.13 0.00 32.95 3.55
1688 2527 6.096987 GTGAGTATGAGTATGTGAAGAGGGAA 59.903 42.308 0.00 0.00 0.00 3.97
1691 2530 8.095452 AGTATGAGTATGTGAAGAGGGAATTT 57.905 34.615 0.00 0.00 0.00 1.82
1727 2566 2.677228 CCGGCCTCCAACTGGATT 59.323 61.111 0.00 0.00 44.46 3.01
1742 2581 0.373716 GGATTGTTGTCCGCATCGAC 59.626 55.000 0.00 0.00 0.00 4.20
1754 2593 1.802636 CATCGACGGCTGCCATTTT 59.197 52.632 20.29 0.00 0.00 1.82
1765 2604 2.290641 GCTGCCATTTTCACCGGTATAG 59.709 50.000 6.87 0.00 0.00 1.31
1790 2634 4.172041 TCATCTCTTCCCCAGGGTAATAGA 59.828 45.833 4.22 2.78 36.47 1.98
1839 2685 3.719173 TTTTTCCGCAACCCTGTTAAG 57.281 42.857 0.00 0.00 0.00 1.85
1857 2703 7.362401 CCTGTTAAGTGATTGCTGCTTTCTATT 60.362 37.037 0.00 0.71 0.00 1.73
1863 2709 7.222872 AGTGATTGCTGCTTTCTATTATAGCT 58.777 34.615 0.00 0.00 35.93 3.32
1868 2714 8.768957 TTGCTGCTTTCTATTATAGCTGATAG 57.231 34.615 0.00 1.89 36.36 2.08
1898 2744 2.486982 CCTTGACTGGTTGCTCTCATTG 59.513 50.000 0.00 0.00 0.00 2.82
1945 2791 4.402793 ACACTGATATGGTCACTAGTGGTC 59.597 45.833 22.48 15.08 35.79 4.02
2007 2853 5.698545 GGTCTAGTTCATGCACCAATATCTC 59.301 44.000 0.00 0.00 0.00 2.75
2017 2863 3.314635 GCACCAATATCTCTTGCTTGAGG 59.685 47.826 6.68 0.00 34.98 3.86
2018 2864 3.881688 CACCAATATCTCTTGCTTGAGGG 59.118 47.826 6.68 3.17 34.98 4.30
2059 2905 7.422465 ACATATGGGAAACATGCAAATAAGT 57.578 32.000 7.80 0.00 40.82 2.24
2101 2947 4.517285 GGATCACTGTTGCTCCAGATTAA 58.483 43.478 9.71 0.00 37.87 1.40
2201 3047 5.246656 TGCCTTTGAGAAACCAAATGATGAT 59.753 36.000 0.00 0.00 35.72 2.45
2339 3192 4.626604 ACAAAATTGTATGCAGATTTGGCG 59.373 37.500 19.71 9.29 40.16 5.69
2340 3193 2.497107 ATTGTATGCAGATTTGGCGC 57.503 45.000 0.00 0.00 0.00 6.53
2341 3194 0.455410 TTGTATGCAGATTTGGCGCC 59.545 50.000 22.73 22.73 0.00 6.53
2377 3230 2.661195 GCAAATACCGTTGTGAATGCAC 59.339 45.455 0.00 0.00 45.35 4.57
2413 3266 1.376037 GCAGGTCCCGTTCTTCCTG 60.376 63.158 5.79 5.79 46.96 3.86
2423 3276 3.003378 CCCGTTCTTCCTGTTTGAAAGAC 59.997 47.826 0.00 0.00 0.00 3.01
2585 3446 1.202976 GGATACTGCCATGCCCAGAAT 60.203 52.381 15.80 0.91 34.47 2.40
2641 3503 8.861086 TCATCTTATTGACTCTCTACCAATACC 58.139 37.037 0.00 0.00 33.89 2.73
3139 4215 2.287608 GCAACCCTTTCACTTTCTTCCG 60.288 50.000 0.00 0.00 0.00 4.30
3140 4216 2.949644 CAACCCTTTCACTTTCTTCCGT 59.050 45.455 0.00 0.00 0.00 4.69
3165 4248 0.682209 ACCACATGCAAGCCCTCATC 60.682 55.000 0.00 0.00 0.00 2.92
3198 4281 2.238646 AGCCCTCCACGTCATCAATTTA 59.761 45.455 0.00 0.00 0.00 1.40
3200 4283 3.632145 GCCCTCCACGTCATCAATTTATT 59.368 43.478 0.00 0.00 0.00 1.40
3203 4286 6.035843 CCCTCCACGTCATCAATTTATTTTG 58.964 40.000 0.00 0.00 0.00 2.44
3205 4288 6.527722 CCTCCACGTCATCAATTTATTTTGTG 59.472 38.462 0.00 0.00 0.00 3.33
3316 4411 3.859443 TCATATGGCAAAAATGTGGTGC 58.141 40.909 2.13 0.00 37.55 5.01
3324 4419 4.429108 GCAAAAATGTGGTGCGGTATTAT 58.571 39.130 0.00 0.00 0.00 1.28
3529 4625 4.758674 ACAACAGACATTGAAGGTCATCTG 59.241 41.667 12.74 7.96 37.17 2.90
3571 4696 7.951591 AGGTGTCTTTTTGTAGCATTTGTATT 58.048 30.769 0.00 0.00 0.00 1.89
3572 4697 8.421002 AGGTGTCTTTTTGTAGCATTTGTATTT 58.579 29.630 0.00 0.00 0.00 1.40
3573 4698 9.040939 GGTGTCTTTTTGTAGCATTTGTATTTT 57.959 29.630 0.00 0.00 0.00 1.82
3606 4741 4.482952 ACCGTCTATTTTCTTGTAGGGG 57.517 45.455 0.00 0.00 0.00 4.79
3720 4855 8.189460 AGTGTTTATCGAGATAAGGTAACACTC 58.811 37.037 22.48 12.23 42.21 3.51
3760 4895 6.656314 TCATTATTATTGACGTTCGTGCTT 57.344 33.333 1.74 0.00 0.00 3.91
3786 4922 7.895975 TTCTCAGTGAAGATTTACATCACAG 57.104 36.000 7.75 0.25 45.85 3.66
3985 5135 8.857098 CCATTTCCTTGTCTGATATTGATCAAT 58.143 33.333 23.75 23.75 41.62 2.57
3990 5140 7.283807 TCCTTGTCTGATATTGATCAATGGTTG 59.716 37.037 27.59 15.98 41.62 3.77
3997 5147 8.161699 TGATATTGATCAATGGTTGTGATGAG 57.838 34.615 27.59 0.00 39.20 2.90
4155 5351 4.168760 GCTGGCAATTACAGTGTCAAATC 58.831 43.478 0.00 0.00 38.22 2.17
4267 5463 3.391296 AGTCCAGCTCCTGTCAACTTTTA 59.609 43.478 0.00 0.00 0.00 1.52
4325 5524 8.993121 CCTGTCAACTTTGGATATATACATCAC 58.007 37.037 0.00 0.00 0.00 3.06
4475 5681 6.353082 CCAGTGAGGACCCTACTTTCATATTT 60.353 42.308 0.00 0.00 41.22 1.40
4476 5682 7.147549 CCAGTGAGGACCCTACTTTCATATTTA 60.148 40.741 0.00 0.00 41.22 1.40
4477 5683 8.265055 CAGTGAGGACCCTACTTTCATATTTAA 58.735 37.037 0.00 0.00 0.00 1.52
4478 5684 8.832735 AGTGAGGACCCTACTTTCATATTTAAA 58.167 33.333 0.00 0.00 0.00 1.52
4479 5685 9.628500 GTGAGGACCCTACTTTCATATTTAAAT 57.372 33.333 5.89 5.89 0.00 1.40
4674 5885 7.175104 TCCCTGATATTATCTTTGGTTATGGC 58.825 38.462 5.33 0.00 0.00 4.40
4721 5932 2.877786 TGCCCGTGCAACATATCTATTG 59.122 45.455 0.00 0.00 46.66 1.90
4878 6090 2.270352 AGCGAAGTGAACCATCCAAA 57.730 45.000 0.00 0.00 0.00 3.28
5158 6402 7.648142 TCATCATGTTTCACTTCCTTTTACAC 58.352 34.615 0.00 0.00 0.00 2.90
5159 6403 7.284261 TCATCATGTTTCACTTCCTTTTACACA 59.716 33.333 0.00 0.00 0.00 3.72
5337 6586 8.293867 TCTTTAACTAACCGAAAATGTCAATGG 58.706 33.333 0.00 0.00 0.00 3.16
5348 6597 6.183360 CGAAAATGTCAATGGACTTGTCGATA 60.183 38.462 14.81 0.00 44.61 2.92
5402 6668 3.339253 TGTCTGCAGCAGTATGAATGT 57.661 42.857 22.10 0.00 39.69 2.71
5551 6845 7.201679 CGAACCATAAGAAGAAAATGAGCTGAT 60.202 37.037 0.00 0.00 0.00 2.90
5683 6991 8.992835 AAGGTCTTCTTTCATCATTTAAATGC 57.007 30.769 21.15 4.77 32.36 3.56
5976 7295 3.051081 AGAAGCAAGACTGACATCACC 57.949 47.619 0.00 0.00 0.00 4.02
5987 7307 5.128499 AGACTGACATCACCTAAAGGATCAG 59.872 44.000 2.23 9.44 38.94 2.90
6090 7410 4.441913 CCATGTTGCCTGAAAAAGAACTGT 60.442 41.667 0.00 0.00 0.00 3.55
6103 7423 4.533919 AAGAACTGTGTCTGAGAGATGG 57.466 45.455 0.00 0.00 0.00 3.51
6205 7525 0.692476 ATGCTGTCCAACAGGCTACA 59.308 50.000 9.01 0.00 46.01 2.74
6206 7526 0.472044 TGCTGTCCAACAGGCTACAA 59.528 50.000 9.01 0.00 46.01 2.41
6207 7527 1.133945 TGCTGTCCAACAGGCTACAAA 60.134 47.619 9.01 0.00 46.01 2.83
6208 7528 2.162681 GCTGTCCAACAGGCTACAAAT 58.837 47.619 9.01 0.00 46.01 2.32
6209 7529 2.162408 GCTGTCCAACAGGCTACAAATC 59.838 50.000 9.01 0.00 46.01 2.17
6210 7530 3.411446 CTGTCCAACAGGCTACAAATCA 58.589 45.455 0.00 0.00 42.35 2.57
6211 7531 3.146066 TGTCCAACAGGCTACAAATCAC 58.854 45.455 0.00 0.00 0.00 3.06
6212 7532 2.488153 GTCCAACAGGCTACAAATCACC 59.512 50.000 0.00 0.00 0.00 4.02
6213 7533 1.818674 CCAACAGGCTACAAATCACCC 59.181 52.381 0.00 0.00 0.00 4.61
6214 7534 1.818674 CAACAGGCTACAAATCACCCC 59.181 52.381 0.00 0.00 0.00 4.95
6215 7535 1.072266 ACAGGCTACAAATCACCCCA 58.928 50.000 0.00 0.00 0.00 4.96
6216 7536 1.427368 ACAGGCTACAAATCACCCCAA 59.573 47.619 0.00 0.00 0.00 4.12
6217 7537 2.158385 ACAGGCTACAAATCACCCCAAA 60.158 45.455 0.00 0.00 0.00 3.28
6218 7538 2.896685 CAGGCTACAAATCACCCCAAAA 59.103 45.455 0.00 0.00 0.00 2.44
6219 7539 3.323403 CAGGCTACAAATCACCCCAAAAA 59.677 43.478 0.00 0.00 0.00 1.94
6362 7684 3.937706 CGTTGGAGCAGAAGATGATTCTT 59.062 43.478 0.00 0.00 44.99 2.52
6415 7741 2.263540 GCAAATGGCTGCAGGTGG 59.736 61.111 17.12 0.00 42.17 4.61
6429 7755 0.616111 AGGTGGAAGTGAGCGGAGAT 60.616 55.000 0.00 0.00 0.00 2.75
6465 7791 1.304282 GGATGTGGCAGTGACCCAT 59.696 57.895 0.00 0.00 34.34 4.00
6545 7873 3.996150 TTCGTACTTATTCTAGGCCGG 57.004 47.619 0.00 0.00 0.00 6.13
6556 7884 0.179081 CTAGGCCGGTTTGTAGCTCC 60.179 60.000 1.90 0.00 0.00 4.70
6576 7904 4.539726 TCCCATCATCCTCTGGAATTTTG 58.460 43.478 0.00 0.00 34.34 2.44
6591 7919 7.939039 TCTGGAATTTTGTCTAGAAACATCACT 59.061 33.333 0.00 0.00 32.72 3.41
6666 7999 9.688592 CCTTATCTACCGGTTTTATAAGTACTG 57.311 37.037 25.75 15.48 31.25 2.74
6670 8003 8.807948 TCTACCGGTTTTATAAGTACTGTACT 57.192 34.615 15.04 14.53 41.73 2.73
6671 8004 9.899661 TCTACCGGTTTTATAAGTACTGTACTA 57.100 33.333 19.97 9.59 38.26 1.82
6673 8006 7.484140 ACCGGTTTTATAAGTACTGTACTAGC 58.516 38.462 19.97 11.91 38.26 3.42
6695 8028 4.161754 GCTACCCTGAACACCTACATAACT 59.838 45.833 0.00 0.00 0.00 2.24
6696 8029 5.361857 GCTACCCTGAACACCTACATAACTA 59.638 44.000 0.00 0.00 0.00 2.24
6697 8030 5.672421 ACCCTGAACACCTACATAACTAC 57.328 43.478 0.00 0.00 0.00 2.73
6698 8031 5.339477 ACCCTGAACACCTACATAACTACT 58.661 41.667 0.00 0.00 0.00 2.57
6699 8032 5.421374 ACCCTGAACACCTACATAACTACTC 59.579 44.000 0.00 0.00 0.00 2.59
6700 8033 5.163437 CCCTGAACACCTACATAACTACTCC 60.163 48.000 0.00 0.00 0.00 3.85
6701 8034 5.163437 CCTGAACACCTACATAACTACTCCC 60.163 48.000 0.00 0.00 0.00 4.30
6702 8035 5.586877 TGAACACCTACATAACTACTCCCT 58.413 41.667 0.00 0.00 0.00 4.20
6703 8036 5.655532 TGAACACCTACATAACTACTCCCTC 59.344 44.000 0.00 0.00 0.00 4.30
6704 8037 4.544683 ACACCTACATAACTACTCCCTCC 58.455 47.826 0.00 0.00 0.00 4.30
6705 8038 3.568853 CACCTACATAACTACTCCCTCCG 59.431 52.174 0.00 0.00 0.00 4.63
6706 8039 3.203934 ACCTACATAACTACTCCCTCCGT 59.796 47.826 0.00 0.00 0.00 4.69
6707 8040 3.819902 CCTACATAACTACTCCCTCCGTC 59.180 52.174 0.00 0.00 0.00 4.79
6708 8041 2.664015 ACATAACTACTCCCTCCGTCC 58.336 52.381 0.00 0.00 0.00 4.79
6709 8042 1.962100 CATAACTACTCCCTCCGTCCC 59.038 57.143 0.00 0.00 0.00 4.46
6710 8043 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
6711 8044 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
6712 8045 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
6713 8046 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
6714 8047 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
6715 8048 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
6716 8049 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
6717 8050 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
6718 8051 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
6719 8052 2.701951 TCCCTCCGTCCCATAATGTAAC 59.298 50.000 0.00 0.00 0.00 2.50
6720 8053 2.704065 CCCTCCGTCCCATAATGTAACT 59.296 50.000 0.00 0.00 0.00 2.24
6721 8054 3.899360 CCCTCCGTCCCATAATGTAACTA 59.101 47.826 0.00 0.00 0.00 2.24
6722 8055 4.021368 CCCTCCGTCCCATAATGTAACTAG 60.021 50.000 0.00 0.00 0.00 2.57
6723 8056 4.587684 CCTCCGTCCCATAATGTAACTAGT 59.412 45.833 0.00 0.00 0.00 2.57
6724 8057 5.509163 CCTCCGTCCCATAATGTAACTAGTG 60.509 48.000 0.00 0.00 0.00 2.74
6725 8058 4.957954 TCCGTCCCATAATGTAACTAGTGT 59.042 41.667 0.00 0.00 0.00 3.55
6726 8059 5.068198 TCCGTCCCATAATGTAACTAGTGTC 59.932 44.000 0.00 0.00 0.00 3.67
6727 8060 5.163488 CCGTCCCATAATGTAACTAGTGTCA 60.163 44.000 0.00 0.00 0.00 3.58
6728 8061 6.334989 CGTCCCATAATGTAACTAGTGTCAA 58.665 40.000 0.00 0.00 0.00 3.18
6729 8062 6.814644 CGTCCCATAATGTAACTAGTGTCAAA 59.185 38.462 0.00 0.00 0.00 2.69
6730 8063 7.332430 CGTCCCATAATGTAACTAGTGTCAAAA 59.668 37.037 0.00 0.00 0.00 2.44
6731 8064 9.005777 GTCCCATAATGTAACTAGTGTCAAAAA 57.994 33.333 0.00 0.00 0.00 1.94
6752 8085 7.486802 AAAAACGTCTTATATTACGGGATGG 57.513 36.000 10.89 0.00 43.25 3.51
6753 8086 6.409524 AAACGTCTTATATTACGGGATGGA 57.590 37.500 10.89 0.00 43.25 3.41
6754 8087 5.640189 ACGTCTTATATTACGGGATGGAG 57.360 43.478 10.89 0.00 43.25 3.86
6755 8088 4.461781 ACGTCTTATATTACGGGATGGAGG 59.538 45.833 10.89 0.00 43.25 4.30
6756 8089 4.142227 CGTCTTATATTACGGGATGGAGGG 60.142 50.000 0.00 0.00 35.51 4.30
6757 8090 5.021458 GTCTTATATTACGGGATGGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
6758 8091 5.127356 GTCTTATATTACGGGATGGAGGGAG 59.873 48.000 0.00 0.00 0.00 4.30
6946 8315 4.620086 TGGAGTCCCAGAGGATAGTTAA 57.380 45.455 6.74 0.00 46.41 2.01
7026 8401 1.734477 CTTGGCGTCGTGGTGAGAG 60.734 63.158 0.00 0.00 0.00 3.20
7027 8402 2.421877 CTTGGCGTCGTGGTGAGAGT 62.422 60.000 0.00 0.00 0.00 3.24
7028 8403 2.430921 GGCGTCGTGGTGAGAGTG 60.431 66.667 0.00 0.00 0.00 3.51
7029 8404 2.643272 GCGTCGTGGTGAGAGTGA 59.357 61.111 0.00 0.00 0.00 3.41
7030 8405 1.442857 GCGTCGTGGTGAGAGTGAG 60.443 63.158 0.00 0.00 0.00 3.51
7058 8433 3.246699 CAGCCACACATTTGAAGCTTTTG 59.753 43.478 0.00 0.00 33.95 2.44
7076 8451 0.615331 TGGGCAGGTGATGAAGAGAC 59.385 55.000 0.00 0.00 0.00 3.36
7106 8481 1.613437 CTTCGGTTGGGCAAGAACATT 59.387 47.619 0.00 0.00 0.00 2.71
7156 8532 8.151141 TCAAGTGGAAGTATCTACGTACATAG 57.849 38.462 0.00 0.00 41.56 2.23
7157 8533 6.557291 AGTGGAAGTATCTACGTACATAGC 57.443 41.667 0.00 0.00 41.56 2.97
7158 8534 5.178996 AGTGGAAGTATCTACGTACATAGCG 59.821 44.000 0.00 0.00 41.56 4.26
7159 8535 5.178252 GTGGAAGTATCTACGTACATAGCGA 59.822 44.000 0.00 0.00 31.40 4.93
7160 8536 5.407691 TGGAAGTATCTACGTACATAGCGAG 59.592 44.000 0.00 0.00 0.00 5.03
7161 8537 4.925061 AGTATCTACGTACATAGCGAGC 57.075 45.455 0.00 0.00 0.00 5.03
7233 8639 3.209410 CTTGTCAGCCCAGGAATGATAC 58.791 50.000 0.00 0.00 0.00 2.24
7236 8642 1.688735 TCAGCCCAGGAATGATACGAG 59.311 52.381 0.00 0.00 0.00 4.18
7238 8644 2.119495 AGCCCAGGAATGATACGAGTT 58.881 47.619 0.00 0.00 0.00 3.01
7239 8645 2.158900 AGCCCAGGAATGATACGAGTTG 60.159 50.000 0.00 0.00 0.00 3.16
7241 8647 3.181469 GCCCAGGAATGATACGAGTTGTA 60.181 47.826 0.00 0.00 37.49 2.41
7243 8649 4.099573 CCCAGGAATGATACGAGTTGTACT 59.900 45.833 0.00 0.00 35.44 2.73
7244 8650 5.282510 CCAGGAATGATACGAGTTGTACTC 58.717 45.833 0.00 0.00 41.71 2.59
7245 8651 5.067936 CCAGGAATGATACGAGTTGTACTCT 59.932 44.000 5.41 0.00 42.92 3.24
7246 8652 6.262496 CCAGGAATGATACGAGTTGTACTCTA 59.738 42.308 5.41 0.00 42.92 2.43
7247 8653 7.133513 CAGGAATGATACGAGTTGTACTCTAC 58.866 42.308 5.41 0.00 42.92 2.59
7248 8654 6.827251 AGGAATGATACGAGTTGTACTCTACA 59.173 38.462 5.41 1.53 42.92 2.74
7249 8655 7.338703 AGGAATGATACGAGTTGTACTCTACAA 59.661 37.037 5.41 0.00 42.92 2.41
7298 8821 3.483085 GCTAACCGAACAGCACGTAAATC 60.483 47.826 0.00 0.00 37.73 2.17
7450 10061 5.669477 ACAATTTTAAGCAAAGCCAACTGA 58.331 33.333 0.00 0.00 0.00 3.41
7451 10062 5.523552 ACAATTTTAAGCAAAGCCAACTGAC 59.476 36.000 0.00 0.00 0.00 3.51
7463 10493 2.912624 AACTGACGGACGGACGGAC 61.913 63.158 6.00 0.89 38.39 4.79
7496 10526 1.160137 GTGCCACTAGAAAGCCACAG 58.840 55.000 0.00 0.00 0.00 3.66
7500 10530 2.935676 GCCACTAGAAAGCCACAGGTAC 60.936 54.545 0.00 0.00 0.00 3.34
7535 10565 2.294512 GCTCCCTCTGTTTTGTTTCCAG 59.705 50.000 0.00 0.00 0.00 3.86
7558 10588 3.153919 ACAGACTGGAAGAGACACTCTC 58.846 50.000 7.51 0.00 40.28 3.20
7570 10600 3.822996 AGACACTCTCGACATGTAAACG 58.177 45.455 0.00 0.00 0.00 3.60
7578 10727 2.224314 TCGACATGTAAACGCAATGCAA 59.776 40.909 5.91 0.00 0.00 4.08
7596 10745 2.357760 GCCGGCGTTGTTACAGGA 60.358 61.111 12.58 0.00 0.00 3.86
7608 10765 6.256975 GCGTTGTTACAGGATACATGACATAA 59.743 38.462 0.00 0.00 41.41 1.90
7645 10802 4.159506 TCCACATCGACAATGACACATCTA 59.840 41.667 0.00 0.00 38.83 1.98
7646 10803 4.869861 CCACATCGACAATGACACATCTAA 59.130 41.667 0.00 0.00 38.83 2.10
7675 10832 6.586344 ACTGACAGCATAACAGCATTACTAT 58.414 36.000 1.25 0.00 36.85 2.12
7752 10909 4.380867 CCAGGAATATGTCACAACTTTGGC 60.381 45.833 0.00 0.00 0.00 4.52
7753 10910 4.218200 CAGGAATATGTCACAACTTTGGCA 59.782 41.667 0.00 0.00 0.00 4.92
7771 10929 6.952773 TTGGCAAGTAAACAAACTAGACAT 57.047 33.333 0.00 0.00 0.00 3.06
7849 11007 8.275632 GCATCCACATCTAAAAAGAAACAAAAC 58.724 33.333 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.685828 AACTAATAAGCTTGATAAAACGCAAAA 57.314 25.926 9.86 0.00 0.00 2.44
158 159 4.012554 CGGATGATCAACCGGTCG 57.987 61.111 30.77 10.20 44.59 4.79
197 198 9.495754 GCTTGAGAAAATATGTCTTGTGAATAC 57.504 33.333 0.00 0.00 0.00 1.89
199 200 8.345724 AGCTTGAGAAAATATGTCTTGTGAAT 57.654 30.769 0.00 0.00 0.00 2.57
265 452 3.770666 TCATCGAAGCAACTAGTAGTGC 58.229 45.455 10.95 10.95 0.00 4.40
344 531 3.139077 GTTGGTATCGATTGACCCATCC 58.861 50.000 13.60 2.65 34.58 3.51
418 605 5.985911 TCTACTGGTGATTTTAGGGCTTAC 58.014 41.667 0.00 0.00 0.00 2.34
422 609 4.080526 TCCTTCTACTGGTGATTTTAGGGC 60.081 45.833 0.00 0.00 0.00 5.19
457 662 3.869912 GCTCAGGTTTTCAGCTGTATGGA 60.870 47.826 14.67 3.15 46.88 3.41
460 665 3.423539 TGCTCAGGTTTTCAGCTGTAT 57.576 42.857 14.67 0.00 46.88 2.29
464 669 1.952296 CACTTGCTCAGGTTTTCAGCT 59.048 47.619 0.00 0.00 34.03 4.24
476 681 1.154150 GAACATGGCGCACTTGCTC 60.154 57.895 10.83 4.72 39.32 4.26
518 723 2.261671 GACACGTGGATGGCGAGT 59.738 61.111 21.57 0.00 36.02 4.18
520 725 4.077184 GGGACACGTGGATGGCGA 62.077 66.667 21.57 0.00 0.00 5.54
532 737 2.281484 GTTTCTGCGGCAGGGACA 60.281 61.111 28.18 7.59 31.51 4.02
553 758 1.515519 CGTTCTCGATTTCCGCCGA 60.516 57.895 0.00 0.00 39.71 5.54
567 772 2.860735 CGAATCCATTCCAGTCTCGTTC 59.139 50.000 0.00 0.00 33.28 3.95
591 796 2.609610 CGTCCCTTTCCTCCCCCA 60.610 66.667 0.00 0.00 0.00 4.96
715 1313 1.731433 CCAAATCCATCCCGCTGCTG 61.731 60.000 0.00 0.00 0.00 4.41
802 1433 0.178990 GAGAGAGAGAGGGAGGAGCC 60.179 65.000 0.00 0.00 0.00 4.70
803 1434 0.846693 AGAGAGAGAGAGGGAGGAGC 59.153 60.000 0.00 0.00 0.00 4.70
804 1435 1.421646 GGAGAGAGAGAGAGGGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
806 1437 0.108585 CGGAGAGAGAGAGAGGGAGG 59.891 65.000 0.00 0.00 0.00 4.30
807 1438 0.535102 GCGGAGAGAGAGAGAGGGAG 60.535 65.000 0.00 0.00 0.00 4.30
808 1439 0.986019 AGCGGAGAGAGAGAGAGGGA 60.986 60.000 0.00 0.00 0.00 4.20
809 1440 0.106719 AAGCGGAGAGAGAGAGAGGG 60.107 60.000 0.00 0.00 0.00 4.30
810 1441 1.405105 CAAAGCGGAGAGAGAGAGAGG 59.595 57.143 0.00 0.00 0.00 3.69
853 1486 4.601794 TGGGCTTGCAGGTGGTGG 62.602 66.667 0.00 0.00 0.00 4.61
905 1546 2.360475 AAGAGAAGGGCCGCTTGC 60.360 61.111 10.77 3.96 40.16 4.01
906 1547 1.023513 CAGAAGAGAAGGGCCGCTTG 61.024 60.000 10.77 0.00 0.00 4.01
907 1548 1.298014 CAGAAGAGAAGGGCCGCTT 59.702 57.895 6.21 6.21 0.00 4.68
908 1549 1.484444 AACAGAAGAGAAGGGCCGCT 61.484 55.000 0.00 0.00 0.00 5.52
909 1550 0.606673 AAACAGAAGAGAAGGGCCGC 60.607 55.000 0.00 0.00 0.00 6.53
910 1551 1.002544 AGAAACAGAAGAGAAGGGCCG 59.997 52.381 0.00 0.00 0.00 6.13
911 1552 2.039084 TCAGAAACAGAAGAGAAGGGCC 59.961 50.000 0.00 0.00 0.00 5.80
912 1553 3.007398 TCTCAGAAACAGAAGAGAAGGGC 59.993 47.826 0.00 0.00 34.45 5.19
913 1554 4.283212 AGTCTCAGAAACAGAAGAGAAGGG 59.717 45.833 0.00 0.00 38.70 3.95
914 1555 5.467035 AGTCTCAGAAACAGAAGAGAAGG 57.533 43.478 0.00 0.00 38.70 3.46
915 1556 5.153513 CGAGTCTCAGAAACAGAAGAGAAG 58.846 45.833 0.00 0.00 38.70 2.85
916 1557 4.022762 CCGAGTCTCAGAAACAGAAGAGAA 60.023 45.833 0.00 0.00 38.70 2.87
917 1558 3.504134 CCGAGTCTCAGAAACAGAAGAGA 59.496 47.826 0.00 0.00 34.95 3.10
921 1562 5.977489 TTATCCGAGTCTCAGAAACAGAA 57.023 39.130 0.00 0.00 0.00 3.02
935 1576 3.334691 TGTGCAGTCCTTTTTATCCGAG 58.665 45.455 0.00 0.00 0.00 4.63
938 1579 5.009610 TGAACTTGTGCAGTCCTTTTTATCC 59.990 40.000 0.00 0.00 32.94 2.59
947 1588 3.931578 ACTATCTGAACTTGTGCAGTCC 58.068 45.455 8.45 0.00 32.94 3.85
949 1590 4.081420 CCCTACTATCTGAACTTGTGCAGT 60.081 45.833 8.45 0.21 37.30 4.40
950 1591 4.081420 ACCCTACTATCTGAACTTGTGCAG 60.081 45.833 2.38 2.38 0.00 4.41
951 1592 3.838317 ACCCTACTATCTGAACTTGTGCA 59.162 43.478 0.00 0.00 0.00 4.57
953 1594 4.712337 AGGACCCTACTATCTGAACTTGTG 59.288 45.833 0.00 0.00 0.00 3.33
954 1595 4.949121 AGGACCCTACTATCTGAACTTGT 58.051 43.478 0.00 0.00 0.00 3.16
973 1781 1.596934 GTCGGCAATGTCAGGAGGA 59.403 57.895 0.00 0.00 0.00 3.71
975 1783 1.021390 GTGGTCGGCAATGTCAGGAG 61.021 60.000 0.00 0.00 0.00 3.69
976 1784 1.003839 GTGGTCGGCAATGTCAGGA 60.004 57.895 0.00 0.00 0.00 3.86
979 1787 2.358125 CGGTGGTCGGCAATGTCA 60.358 61.111 0.00 0.00 34.75 3.58
980 1788 3.799755 GCGGTGGTCGGCAATGTC 61.800 66.667 0.00 0.00 39.26 3.06
1112 1928 0.260230 ATTCAGAGAGAGAGGCGGGA 59.740 55.000 0.00 0.00 0.00 5.14
1113 1929 0.673437 GATTCAGAGAGAGAGGCGGG 59.327 60.000 0.00 0.00 0.00 6.13
1231 2047 4.308458 CCGTGTCCACCTTGCCGA 62.308 66.667 0.00 0.00 0.00 5.54
1241 2057 1.168714 AGACGTACCTAACCGTGTCC 58.831 55.000 0.00 0.00 37.44 4.02
1261 2077 2.303600 AGGACATTGCAATTTGGCATGT 59.696 40.909 9.83 4.02 44.48 3.21
1270 2086 5.163322 TGGAAAAAGAACAGGACATTGCAAT 60.163 36.000 5.99 5.99 0.00 3.56
1279 2095 1.269448 GCGCATGGAAAAAGAACAGGA 59.731 47.619 0.30 0.00 0.00 3.86
1299 2115 0.454600 ACATACAGTAGTCGTGCGGG 59.545 55.000 0.00 0.00 0.00 6.13
1309 2125 7.321908 TGCTTCGTTATTGGTTACATACAGTA 58.678 34.615 0.00 0.00 0.00 2.74
1316 2132 3.186817 CCGTTGCTTCGTTATTGGTTACA 59.813 43.478 0.00 0.00 0.00 2.41
1317 2133 3.432933 TCCGTTGCTTCGTTATTGGTTAC 59.567 43.478 0.00 0.00 0.00 2.50
1330 2149 0.028902 GCGTTGAACTTCCGTTGCTT 59.971 50.000 0.00 0.00 32.39 3.91
1341 2160 2.686558 TTGAATGCTGAGCGTTGAAC 57.313 45.000 17.74 3.06 37.94 3.18
1347 2166 2.975410 TTCTGTTTGAATGCTGAGCG 57.025 45.000 0.00 0.00 0.00 5.03
1355 2174 4.129380 GCTTTTGCCCTTTCTGTTTGAAT 58.871 39.130 0.00 0.00 40.15 2.57
1369 2188 1.465777 GGACATTGCAATGCTTTTGCC 59.534 47.619 33.94 22.03 46.87 4.52
1426 2245 2.090943 ACCCATCCTACCGATACAGGAA 60.091 50.000 0.00 0.00 44.03 3.36
1427 2246 1.502039 ACCCATCCTACCGATACAGGA 59.498 52.381 0.00 0.00 44.90 3.86
1428 2247 1.618837 CACCCATCCTACCGATACAGG 59.381 57.143 0.00 0.00 37.30 4.00
1429 2248 2.317040 ACACCCATCCTACCGATACAG 58.683 52.381 0.00 0.00 0.00 2.74
1442 2281 7.001674 TGAAATTACTACTGTCAAACACCCAT 58.998 34.615 0.00 0.00 0.00 4.00
1464 2303 3.388024 AGGACTGTGCTAGTGAAGTTGAA 59.612 43.478 0.00 0.00 40.53 2.69
1472 2311 4.238514 GTGAAAGTAGGACTGTGCTAGTG 58.761 47.826 16.07 0.00 40.53 2.74
1478 2317 5.050091 GTGACATTGTGAAAGTAGGACTGTG 60.050 44.000 0.00 0.00 0.00 3.66
1482 2321 4.385825 TGGTGACATTGTGAAAGTAGGAC 58.614 43.478 0.00 0.00 33.40 3.85
1486 2325 3.750371 CCCTGGTGACATTGTGAAAGTA 58.250 45.455 0.00 0.00 41.51 2.24
1539 2378 2.028733 GCATTTGGCTGCCGGTTTG 61.029 57.895 14.98 9.95 40.25 2.93
1544 2383 0.108520 AAATCTGCATTTGGCTGCCG 60.109 50.000 14.98 0.00 45.15 5.69
1549 2388 3.581024 TGAGTGAAATCTGCATTTGGC 57.419 42.857 0.00 0.00 45.13 4.52
1552 2391 6.395426 TGAACTTGAGTGAAATCTGCATTT 57.605 33.333 0.00 0.00 34.70 2.32
1599 2438 6.185114 AGCTGCACCTAGAGAAAATCATAT 57.815 37.500 1.02 0.00 0.00 1.78
1600 2439 5.453903 GGAGCTGCACCTAGAGAAAATCATA 60.454 44.000 8.98 0.00 0.00 2.15
1611 2450 1.002430 TGTTCTTGGAGCTGCACCTAG 59.998 52.381 18.28 18.28 0.00 3.02
1644 2483 2.033448 GTTGGCCATCACCCGACA 59.967 61.111 6.09 0.00 36.85 4.35
1648 2487 0.962356 CTCACTGTTGGCCATCACCC 60.962 60.000 12.62 0.00 0.00 4.61
1658 2497 7.315890 TCTTCACATACTCATACTCACTGTTG 58.684 38.462 0.00 0.00 0.00 3.33
1664 2503 5.766590 TCCCTCTTCACATACTCATACTCA 58.233 41.667 0.00 0.00 0.00 3.41
1688 2527 2.388232 GCGGCGGTCGAACTCAAAT 61.388 57.895 6.02 0.00 42.43 2.32
1742 2581 2.179018 CGGTGAAAATGGCAGCCG 59.821 61.111 7.03 0.00 0.00 5.52
1754 2593 4.583489 GGAAGAGATGAACTATACCGGTGA 59.417 45.833 19.93 3.75 0.00 4.02
1765 2604 1.290134 ACCCTGGGGAAGAGATGAAC 58.710 55.000 18.88 0.00 38.96 3.18
1826 2671 2.558359 AGCAATCACTTAACAGGGTTGC 59.442 45.455 0.00 0.00 39.15 4.17
1839 2685 7.172190 TCAGCTATAATAGAAAGCAGCAATCAC 59.828 37.037 0.00 0.00 38.75 3.06
1857 2703 9.069082 GTCAAGGTTTAGAGACTATCAGCTATA 57.931 37.037 0.00 0.00 0.00 1.31
1863 2709 6.017192 ACCAGTCAAGGTTTAGAGACTATCA 58.983 40.000 0.00 0.00 39.34 2.15
1898 2744 3.929610 CAGCTAGGAAGTGAGCAAAGTAC 59.070 47.826 0.00 0.00 41.36 2.73
1945 2791 0.806868 ATGGTCGATGCAGTTGCTTG 59.193 50.000 5.62 0.00 42.66 4.01
2059 2905 8.584157 GTGATCCCCATATTTGCATAATGTAAA 58.416 33.333 0.00 0.00 36.45 2.01
2201 3047 9.524106 CAAGCATTCATCAATCTTAAAGCATTA 57.476 29.630 0.00 0.00 0.00 1.90
2413 3266 8.801913 CAAAGAATGAACAGAAGTCTTTCAAAC 58.198 33.333 8.81 7.10 36.62 2.93
2452 3305 6.699575 AAGCAAACAGAAAGATAACACACT 57.300 33.333 0.00 0.00 0.00 3.55
2619 3480 6.926272 GCAGGTATTGGTAGAGAGTCAATAAG 59.074 42.308 0.00 0.00 35.82 1.73
2641 3503 6.089016 CACATAAAGACAGAATTTTGCTGCAG 59.911 38.462 10.11 10.11 36.86 4.41
2740 3602 5.449862 GCATACAACTCGCCCATCAAAATAA 60.450 40.000 0.00 0.00 0.00 1.40
2880 3851 7.652300 TGTAGAGAACATCAACACACATAAC 57.348 36.000 0.00 0.00 31.43 1.89
2970 3949 4.821260 TGTTGCTGAAGCTTCATAGTTTCA 59.179 37.500 28.57 18.59 45.62 2.69
3139 4215 0.319813 GCTTGCATGTGGTGGGAAAC 60.320 55.000 1.14 0.00 0.00 2.78
3140 4216 1.470996 GGCTTGCATGTGGTGGGAAA 61.471 55.000 1.14 0.00 0.00 3.13
3165 4248 1.214589 GAGGGCTTGCATGTGCTTG 59.785 57.895 6.55 0.57 42.66 4.01
3292 4387 6.047870 GCACCACATTTTTGCCATATGAATA 58.952 36.000 3.65 0.00 0.00 1.75
3346 4441 3.035942 CGTTGCTGCGGAAATTTATAGC 58.964 45.455 0.00 0.00 0.00 2.97
3529 4625 7.842887 AGACACCTCTAACCCTAGATAATTC 57.157 40.000 0.00 0.00 33.59 2.17
3571 4696 7.951530 AAATAGACGGTTAAAGAGACGAAAA 57.048 32.000 0.00 0.00 0.00 2.29
3572 4697 7.869429 AGAAAATAGACGGTTAAAGAGACGAAA 59.131 33.333 0.00 0.00 0.00 3.46
3573 4698 7.373493 AGAAAATAGACGGTTAAAGAGACGAA 58.627 34.615 0.00 0.00 0.00 3.85
3606 4741 8.329203 ACTCATTCTTGTCCTTAGAAAATGTC 57.671 34.615 0.00 0.00 35.43 3.06
3760 4895 9.591792 CTGTGATGTAAATCTTCACTGAGAATA 57.408 33.333 12.53 0.00 45.50 1.75
3898 5048 7.417612 ACAAACTAAAGTACAGCAAGAATGTG 58.582 34.615 0.00 0.00 32.02 3.21
3985 5135 3.253921 CACTTGATTGCTCATCACAACCA 59.746 43.478 0.00 0.00 41.98 3.67
3990 5140 2.227149 TGCACACTTGATTGCTCATCAC 59.773 45.455 0.00 0.00 41.98 3.06
3997 5147 1.242076 AGGTCTGCACACTTGATTGC 58.758 50.000 0.00 0.00 39.33 3.56
4155 5351 8.310382 CCAAAACTCAGGTCCTATGATATCTAG 58.690 40.741 3.98 3.69 0.00 2.43
4267 5463 3.728385 AGCTTCCAGTCCAGCTAAAAT 57.272 42.857 0.00 0.00 44.86 1.82
4325 5524 2.346803 CCCGACACACAATTAGACTGG 58.653 52.381 0.00 0.00 0.00 4.00
4475 5681 7.081349 GCCGCATGTATTTAGCAATGTATTTA 58.919 34.615 0.00 0.00 0.00 1.40
4476 5682 5.920273 GCCGCATGTATTTAGCAATGTATTT 59.080 36.000 0.00 0.00 0.00 1.40
4477 5683 5.009510 TGCCGCATGTATTTAGCAATGTATT 59.990 36.000 0.00 0.00 0.00 1.89
4478 5684 4.518590 TGCCGCATGTATTTAGCAATGTAT 59.481 37.500 0.00 0.00 0.00 2.29
4479 5685 3.879892 TGCCGCATGTATTTAGCAATGTA 59.120 39.130 0.00 0.00 0.00 2.29
4480 5686 2.687425 TGCCGCATGTATTTAGCAATGT 59.313 40.909 0.00 0.00 0.00 2.71
4481 5687 3.352554 TGCCGCATGTATTTAGCAATG 57.647 42.857 0.00 0.00 0.00 2.82
4482 5688 4.589216 ATTGCCGCATGTATTTAGCAAT 57.411 36.364 0.00 2.37 43.92 3.56
4483 5689 4.336713 TGTATTGCCGCATGTATTTAGCAA 59.663 37.500 0.00 0.00 43.59 3.91
4484 5690 3.879892 TGTATTGCCGCATGTATTTAGCA 59.120 39.130 0.00 0.00 0.00 3.49
4485 5691 4.481930 TGTATTGCCGCATGTATTTAGC 57.518 40.909 0.00 0.00 0.00 3.09
4486 5692 8.503196 TCTAAATGTATTGCCGCATGTATTTAG 58.497 33.333 20.35 20.35 37.82 1.85
4674 5885 5.647589 TCATACCTGTACTCGTTGCTAAAG 58.352 41.667 0.00 0.00 0.00 1.85
4718 5929 4.885907 CCATAGTTCTCTCCATGCAACAAT 59.114 41.667 0.00 0.00 0.00 2.71
4721 5932 4.142609 TCCATAGTTCTCTCCATGCAAC 57.857 45.455 0.00 0.00 0.00 4.17
5158 6402 7.267857 GGGGAAATATTCTTTCCACTTCATTG 58.732 38.462 16.28 0.00 45.99 2.82
5159 6403 7.423844 GGGGAAATATTCTTTCCACTTCATT 57.576 36.000 16.28 0.00 45.99 2.57
5337 6586 6.697455 TCATGCTGAACTATTATCGACAAGTC 59.303 38.462 0.00 0.00 0.00 3.01
5376 6634 4.183865 TCATACTGCTGCAGACAACATAC 58.816 43.478 34.28 0.00 35.18 2.39
5477 6756 3.009723 CTGCAACAGGGTATCGTTGAAT 58.990 45.455 6.46 0.00 44.20 2.57
5501 6781 7.658982 TCGTTCTAACTACTAGAAGAGTCAACA 59.341 37.037 0.00 0.00 45.39 3.33
5551 6845 5.425577 TGCAAATTAGCGTGTAGAACAAA 57.574 34.783 0.00 0.00 37.31 2.83
5682 6990 9.827411 AGAATTAATTACGAGAACTGAAAAAGC 57.173 29.630 0.00 0.00 0.00 3.51
5976 7295 8.494016 ACCGAAAAATTACTCTGATCCTTTAG 57.506 34.615 0.00 0.00 0.00 1.85
6090 7410 2.557555 ATCCACCCATCTCTCAGACA 57.442 50.000 0.00 0.00 0.00 3.41
6103 7423 6.828785 AGTATCAGTTGGAAAATGTATCCACC 59.171 38.462 0.00 0.00 46.37 4.61
6184 7504 2.304470 TGTAGCCTGTTGGACAGCATTA 59.696 45.455 2.59 0.00 44.63 1.90
6218 7538 5.918576 GGTGATTTCTCCGTTTCGAATTTTT 59.081 36.000 0.00 0.00 0.00 1.94
6219 7539 5.458015 GGTGATTTCTCCGTTTCGAATTTT 58.542 37.500 0.00 0.00 0.00 1.82
6220 7540 4.082949 GGGTGATTTCTCCGTTTCGAATTT 60.083 41.667 0.00 0.00 0.00 1.82
6221 7541 3.439129 GGGTGATTTCTCCGTTTCGAATT 59.561 43.478 0.00 0.00 0.00 2.17
6222 7542 3.007635 GGGTGATTTCTCCGTTTCGAAT 58.992 45.455 0.00 0.00 0.00 3.34
6223 7543 2.224329 TGGGTGATTTCTCCGTTTCGAA 60.224 45.455 0.00 0.00 0.00 3.71
6224 7544 1.345089 TGGGTGATTTCTCCGTTTCGA 59.655 47.619 0.00 0.00 0.00 3.71
6225 7545 1.803334 TGGGTGATTTCTCCGTTTCG 58.197 50.000 0.00 0.00 0.00 3.46
6226 7546 4.783764 ATTTGGGTGATTTCTCCGTTTC 57.216 40.909 0.00 0.00 0.00 2.78
6227 7547 5.545063 AAATTTGGGTGATTTCTCCGTTT 57.455 34.783 0.00 0.00 0.00 3.60
6228 7548 6.850752 ATAAATTTGGGTGATTTCTCCGTT 57.149 33.333 0.00 0.00 0.00 4.44
6229 7549 7.948034 TTATAAATTTGGGTGATTTCTCCGT 57.052 32.000 0.00 0.00 0.00 4.69
6230 7550 7.704899 GGTTTATAAATTTGGGTGATTTCTCCG 59.295 37.037 0.00 0.00 0.00 4.63
6231 7551 8.536175 TGGTTTATAAATTTGGGTGATTTCTCC 58.464 33.333 0.00 0.00 0.00 3.71
6233 7553 9.889128 CATGGTTTATAAATTTGGGTGATTTCT 57.111 29.630 0.00 0.00 0.00 2.52
6234 7554 8.611757 GCATGGTTTATAAATTTGGGTGATTTC 58.388 33.333 0.00 0.00 0.00 2.17
6273 7594 4.832248 CAGCACTTCCACCTAATCACTTA 58.168 43.478 0.00 0.00 0.00 2.24
6362 7684 4.482386 CAAAGAAACTCGGACGTGATCTA 58.518 43.478 0.00 0.00 0.00 1.98
6415 7741 2.950877 CGACATCTCCGCTCACTTC 58.049 57.895 0.00 0.00 0.00 3.01
6429 7755 2.710902 CCACCCATCTCTCGCGACA 61.711 63.158 3.71 0.00 0.00 4.35
6434 7760 0.105593 CACATCCCACCCATCTCTCG 59.894 60.000 0.00 0.00 0.00 4.04
6465 7791 1.074775 GTCAGGCCCCATGTCAACA 59.925 57.895 0.00 0.00 0.00 3.33
6545 7873 3.135530 AGAGGATGATGGGAGCTACAAAC 59.864 47.826 0.00 0.00 0.00 2.93
6556 7884 5.198965 AGACAAAATTCCAGAGGATGATGG 58.801 41.667 0.00 0.00 37.97 3.51
6576 7904 8.589335 TCTACAAAACAGTGATGTTTCTAGAC 57.411 34.615 6.81 0.00 40.67 2.59
6591 7919 7.397892 TCCTCAAAACACAATCTACAAAACA 57.602 32.000 0.00 0.00 0.00 2.83
6636 7964 7.345392 ACTTATAAAACCGGTAGATAAGGTGGA 59.655 37.037 28.83 8.12 38.44 4.02
6666 7999 3.363627 AGGTGTTCAGGGTAGCTAGTAC 58.636 50.000 0.00 0.00 0.00 2.73
6668 8001 2.625282 AGGTGTTCAGGGTAGCTAGT 57.375 50.000 0.00 0.00 0.00 2.57
6669 8002 3.362706 TGTAGGTGTTCAGGGTAGCTAG 58.637 50.000 0.00 0.00 0.00 3.42
6670 8003 3.461378 TGTAGGTGTTCAGGGTAGCTA 57.539 47.619 0.00 0.00 0.00 3.32
6671 8004 2.320681 TGTAGGTGTTCAGGGTAGCT 57.679 50.000 0.00 0.00 0.00 3.32
6672 8005 4.161754 AGTTATGTAGGTGTTCAGGGTAGC 59.838 45.833 0.00 0.00 0.00 3.58
6673 8006 5.934402 AGTTATGTAGGTGTTCAGGGTAG 57.066 43.478 0.00 0.00 0.00 3.18
6695 8028 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
6696 8029 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
6697 8030 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
6698 8031 2.701951 GTTACATTATGGGACGGAGGGA 59.298 50.000 0.00 0.00 0.00 4.20
6699 8032 2.704065 AGTTACATTATGGGACGGAGGG 59.296 50.000 0.00 0.00 0.00 4.30
6700 8033 4.587684 ACTAGTTACATTATGGGACGGAGG 59.412 45.833 0.00 0.00 0.00 4.30
6701 8034 5.068723 ACACTAGTTACATTATGGGACGGAG 59.931 44.000 0.00 1.55 0.00 4.63
6702 8035 4.957954 ACACTAGTTACATTATGGGACGGA 59.042 41.667 0.00 0.00 0.00 4.69
6703 8036 5.163488 TGACACTAGTTACATTATGGGACGG 60.163 44.000 0.00 0.00 0.00 4.79
6704 8037 5.898174 TGACACTAGTTACATTATGGGACG 58.102 41.667 0.00 0.00 0.00 4.79
6705 8038 8.556213 TTTTGACACTAGTTACATTATGGGAC 57.444 34.615 0.00 0.00 0.00 4.46
6728 8061 7.274447 TCCATCCCGTAATATAAGACGTTTTT 58.726 34.615 0.00 0.00 37.36 1.94
6729 8062 6.819284 TCCATCCCGTAATATAAGACGTTTT 58.181 36.000 0.00 0.00 37.36 2.43
6730 8063 6.409524 TCCATCCCGTAATATAAGACGTTT 57.590 37.500 8.46 0.00 37.36 3.60
6731 8064 5.047519 CCTCCATCCCGTAATATAAGACGTT 60.048 44.000 8.46 0.00 37.36 3.99
6732 8065 4.461781 CCTCCATCCCGTAATATAAGACGT 59.538 45.833 8.46 0.00 37.36 4.34
6733 8066 4.142227 CCCTCCATCCCGTAATATAAGACG 60.142 50.000 3.44 3.44 38.79 4.18
6734 8067 5.021458 TCCCTCCATCCCGTAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
6735 8068 5.222484 ACTCCCTCCATCCCGTAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6736 8069 5.024118 ACTCCCTCCATCCCGTAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6737 8070 5.019657 ACTCCCTCCATCCCGTAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6738 8071 4.687262 ACTCCCTCCATCCCGTAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6739 8072 3.562108 ACTCCCTCCATCCCGTAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6740 8073 4.140853 AGTTACTCCCTCCATCCCGTAATA 60.141 45.833 0.00 0.00 0.00 0.98
6741 8074 2.970640 GTTACTCCCTCCATCCCGTAAT 59.029 50.000 0.00 0.00 0.00 1.89
6742 8075 2.023695 AGTTACTCCCTCCATCCCGTAA 60.024 50.000 0.00 0.00 0.00 3.18
6743 8076 1.572415 AGTTACTCCCTCCATCCCGTA 59.428 52.381 0.00 0.00 0.00 4.02
6744 8077 0.338814 AGTTACTCCCTCCATCCCGT 59.661 55.000 0.00 0.00 0.00 5.28
6745 8078 0.753262 CAGTTACTCCCTCCATCCCG 59.247 60.000 0.00 0.00 0.00 5.14
6746 8079 1.880941 ACAGTTACTCCCTCCATCCC 58.119 55.000 0.00 0.00 0.00 3.85
6747 8080 4.302559 AAAACAGTTACTCCCTCCATCC 57.697 45.455 0.00 0.00 0.00 3.51
6748 8081 7.793036 AGTATAAAACAGTTACTCCCTCCATC 58.207 38.462 0.00 0.00 0.00 3.51
6749 8082 7.750947 AGTATAAAACAGTTACTCCCTCCAT 57.249 36.000 0.00 0.00 0.00 3.41
6750 8083 7.563724 AAGTATAAAACAGTTACTCCCTCCA 57.436 36.000 0.00 0.00 0.00 3.86
6751 8084 8.756927 AGTAAGTATAAAACAGTTACTCCCTCC 58.243 37.037 0.00 0.00 37.51 4.30
6752 8085 9.800433 GAGTAAGTATAAAACAGTTACTCCCTC 57.200 37.037 14.82 2.54 45.22 4.30
6880 8246 1.227380 GACCATGACAGCCGGCTAG 60.227 63.158 32.30 24.89 0.00 3.42
6946 8315 1.271102 GCGTCTGACCAGAAGTTCTCT 59.729 52.381 1.26 0.00 39.48 3.10
7004 8373 1.079819 CACCACGACGCCAAGAGAT 60.080 57.895 0.00 0.00 0.00 2.75
7026 8401 2.031616 TGTGGCTGCAGCTCTCAC 59.968 61.111 35.82 31.88 41.70 3.51
7027 8402 2.031616 GTGTGGCTGCAGCTCTCA 59.968 61.111 35.82 27.04 41.70 3.27
7028 8403 0.959372 AATGTGTGGCTGCAGCTCTC 60.959 55.000 35.82 26.67 41.70 3.20
7029 8404 0.538977 AAATGTGTGGCTGCAGCTCT 60.539 50.000 35.82 13.06 41.70 4.09
7030 8405 0.388134 CAAATGTGTGGCTGCAGCTC 60.388 55.000 35.82 27.52 41.70 4.09
7058 8433 0.460987 CGTCTCTTCATCACCTGCCC 60.461 60.000 0.00 0.00 0.00 5.36
7090 8465 1.270252 CCACAATGTTCTTGCCCAACC 60.270 52.381 0.00 0.00 0.00 3.77
7106 8481 2.368548 AGCACTGATGTAACTGTCCACA 59.631 45.455 0.00 0.00 0.00 4.17
7156 8532 1.226128 GATCAAACAAGCCGCTCGC 60.226 57.895 0.00 0.00 37.98 5.03
7157 8533 1.059369 CGATCAAACAAGCCGCTCG 59.941 57.895 0.00 0.00 0.00 5.03
7158 8534 1.226128 GCGATCAAACAAGCCGCTC 60.226 57.895 0.00 0.00 42.24 5.03
7159 8535 2.870372 GCGATCAAACAAGCCGCT 59.130 55.556 0.00 0.00 42.24 5.52
7160 8536 2.507322 TTCGCGATCAAACAAGCCGC 62.507 55.000 10.88 0.00 42.11 6.53
7161 8537 0.110419 TTTCGCGATCAAACAAGCCG 60.110 50.000 10.88 0.00 0.00 5.52
7238 8644 1.133598 CGATGGCCGTTGTAGAGTACA 59.866 52.381 0.00 0.00 36.79 2.90
7239 8645 1.535437 CCGATGGCCGTTGTAGAGTAC 60.535 57.143 11.45 0.00 36.31 2.73
7241 8647 1.255667 ACCGATGGCCGTTGTAGAGT 61.256 55.000 11.45 0.00 36.31 3.24
7243 8649 0.742505 CTACCGATGGCCGTTGTAGA 59.257 55.000 22.22 4.37 36.06 2.59
7244 8650 0.249322 CCTACCGATGGCCGTTGTAG 60.249 60.000 20.75 20.75 34.75 2.74
7245 8651 0.971959 ACCTACCGATGGCCGTTGTA 60.972 55.000 11.45 9.35 36.31 2.41
7246 8652 1.833787 AACCTACCGATGGCCGTTGT 61.834 55.000 11.45 8.68 36.31 3.32
7247 8653 1.078708 AACCTACCGATGGCCGTTG 60.079 57.895 5.05 5.05 36.31 4.10
7248 8654 1.078708 CAACCTACCGATGGCCGTT 60.079 57.895 0.00 0.00 36.31 4.44
7249 8655 2.582436 CAACCTACCGATGGCCGT 59.418 61.111 0.00 0.00 36.31 5.68
7298 8821 3.411351 CGGTGAACGCCAAGGACG 61.411 66.667 5.27 0.00 34.82 4.79
7463 10493 0.104120 TGGCACTGATTATCCGTCCG 59.896 55.000 0.00 0.00 0.00 4.79
7467 10497 4.322080 TTCTAGTGGCACTGATTATCCG 57.678 45.455 29.65 7.81 0.00 4.18
7496 10526 2.101082 GAGCTACTGTTAGGCTGGTACC 59.899 54.545 4.43 4.43 36.37 3.34
7500 10530 0.466124 GGGAGCTACTGTTAGGCTGG 59.534 60.000 0.00 0.00 36.37 4.85
7535 10565 2.230266 GAGTGTCTCTTCCAGTCTGTCC 59.770 54.545 0.00 0.00 31.05 4.02
7546 10576 5.462405 GTTTACATGTCGAGAGTGTCTCTT 58.538 41.667 0.00 0.00 41.35 2.85
7558 10588 2.239751 TGCATTGCGTTTACATGTCG 57.760 45.000 0.00 0.38 0.00 4.35
7570 10600 4.722855 AACGCCGGCTTGCATTGC 62.723 61.111 26.68 0.46 0.00 3.56
7578 10727 2.180159 ATCCTGTAACAACGCCGGCT 62.180 55.000 26.68 7.77 0.00 5.52
7608 10765 6.127338 TGTCGATGTGGAATCTATTTCTCAGT 60.127 38.462 0.00 0.00 34.56 3.41
7655 10812 5.684704 ACCATAGTAATGCTGTTATGCTGT 58.315 37.500 0.00 0.00 0.00 4.40
7705 10862 6.226052 GCACTTGATCACATACTCCATGATA 58.774 40.000 0.00 0.00 38.10 2.15
7752 10909 7.417612 ACAGCAATGTCTAGTTTGTTTACTTG 58.582 34.615 0.00 0.00 0.00 3.16
7753 10910 7.568199 ACAGCAATGTCTAGTTTGTTTACTT 57.432 32.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.