Multiple sequence alignment - TraesCS3B01G194300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G194300 | chr3B | 100.000 | 7859 | 0 | 0 | 1 | 7859 | 214551622 | 214559480 | 0.000000e+00 | 14513.0 |
1 | TraesCS3B01G194300 | chr3B | 82.857 | 175 | 24 | 6 | 3171 | 3343 | 523150281 | 523150451 | 1.370000e-32 | 152.0 |
2 | TraesCS3B01G194300 | chr3B | 94.231 | 52 | 3 | 0 | 3069 | 3120 | 333469111 | 333469060 | 6.540000e-11 | 80.5 |
3 | TraesCS3B01G194300 | chr3A | 92.296 | 5361 | 220 | 50 | 937 | 6218 | 165333668 | 165338914 | 0.000000e+00 | 7433.0 |
4 | TraesCS3B01G194300 | chr3A | 92.111 | 469 | 27 | 5 | 6236 | 6697 | 165338903 | 165339368 | 0.000000e+00 | 652.0 |
5 | TraesCS3B01G194300 | chr3A | 85.959 | 641 | 22 | 31 | 6760 | 7362 | 165339367 | 165339977 | 2.410000e-174 | 623.0 |
6 | TraesCS3B01G194300 | chr3A | 84.839 | 620 | 33 | 22 | 132 | 724 | 165332676 | 165333261 | 1.140000e-157 | 568.0 |
7 | TraesCS3B01G194300 | chr3A | 77.480 | 897 | 163 | 27 | 4969 | 5859 | 155418963 | 155418100 | 1.180000e-137 | 501.0 |
8 | TraesCS3B01G194300 | chr3A | 94.660 | 206 | 3 | 3 | 7595 | 7799 | 165415817 | 165416015 | 5.920000e-81 | 313.0 |
9 | TraesCS3B01G194300 | chr3A | 90.110 | 182 | 17 | 1 | 3 | 184 | 165332371 | 165332551 | 1.320000e-57 | 235.0 |
10 | TraesCS3B01G194300 | chr3A | 90.714 | 140 | 10 | 2 | 7461 | 7600 | 165341581 | 165341717 | 4.840000e-42 | 183.0 |
11 | TraesCS3B01G194300 | chr3A | 82.203 | 236 | 19 | 15 | 721 | 947 | 165333291 | 165333512 | 1.740000e-41 | 182.0 |
12 | TraesCS3B01G194300 | chr3A | 94.340 | 106 | 6 | 0 | 7362 | 7467 | 165341063 | 165341168 | 6.310000e-36 | 163.0 |
13 | TraesCS3B01G194300 | chr3A | 78.092 | 283 | 35 | 10 | 3069 | 3343 | 190091045 | 190091308 | 3.800000e-33 | 154.0 |
14 | TraesCS3B01G194300 | chr3A | 77.580 | 281 | 37 | 10 | 3069 | 3343 | 190225459 | 190225719 | 6.350000e-31 | 147.0 |
15 | TraesCS3B01G194300 | chr3D | 92.752 | 5077 | 226 | 52 | 1190 | 6218 | 147828798 | 147823816 | 0.000000e+00 | 7206.0 |
16 | TraesCS3B01G194300 | chr3D | 93.290 | 462 | 23 | 6 | 6236 | 6697 | 147823827 | 147823374 | 0.000000e+00 | 675.0 |
17 | TraesCS3B01G194300 | chr3D | 87.542 | 602 | 46 | 18 | 1 | 582 | 147830367 | 147829775 | 0.000000e+00 | 669.0 |
18 | TraesCS3B01G194300 | chr3D | 87.411 | 421 | 29 | 16 | 721 | 1128 | 147829210 | 147828801 | 5.560000e-126 | 462.0 |
19 | TraesCS3B01G194300 | chr3D | 95.437 | 263 | 9 | 2 | 7598 | 7859 | 147822246 | 147821986 | 4.390000e-112 | 416.0 |
20 | TraesCS3B01G194300 | chr3D | 88.406 | 345 | 26 | 8 | 6798 | 7132 | 147823304 | 147822964 | 3.420000e-108 | 403.0 |
21 | TraesCS3B01G194300 | chr3D | 90.256 | 195 | 9 | 4 | 7303 | 7495 | 147822646 | 147822460 | 6.090000e-61 | 246.0 |
22 | TraesCS3B01G194300 | chr3D | 95.536 | 112 | 4 | 1 | 614 | 724 | 147829351 | 147829240 | 2.250000e-40 | 178.0 |
23 | TraesCS3B01G194300 | chr3D | 77.739 | 283 | 36 | 10 | 3069 | 3343 | 161398314 | 161398577 | 1.770000e-31 | 148.0 |
24 | TraesCS3B01G194300 | chr4B | 81.094 | 1846 | 259 | 51 | 4298 | 6112 | 73482740 | 73484526 | 0.000000e+00 | 1393.0 |
25 | TraesCS3B01G194300 | chr4B | 88.587 | 184 | 20 | 1 | 4087 | 4269 | 73482574 | 73482757 | 1.030000e-53 | 222.0 |
26 | TraesCS3B01G194300 | chr4B | 92.500 | 40 | 2 | 1 | 3352 | 3391 | 149037257 | 149037219 | 1.000000e-03 | 56.5 |
27 | TraesCS3B01G194300 | chr5B | 79.561 | 1639 | 220 | 66 | 4304 | 5915 | 82239179 | 82237629 | 0.000000e+00 | 1064.0 |
28 | TraesCS3B01G194300 | chr5B | 81.685 | 819 | 100 | 27 | 2118 | 2918 | 82240842 | 82240056 | 3.090000e-178 | 636.0 |
29 | TraesCS3B01G194300 | chr5B | 89.326 | 178 | 17 | 2 | 3170 | 3346 | 534338490 | 534338314 | 1.030000e-53 | 222.0 |
30 | TraesCS3B01G194300 | chr5B | 97.561 | 41 | 1 | 0 | 6721 | 6761 | 382381303 | 382381343 | 3.930000e-08 | 71.3 |
31 | TraesCS3B01G194300 | chr5B | 97.561 | 41 | 1 | 0 | 3080 | 3120 | 596503430 | 596503470 | 3.930000e-08 | 71.3 |
32 | TraesCS3B01G194300 | chr5D | 79.440 | 1644 | 212 | 78 | 4298 | 5915 | 72213795 | 72215338 | 0.000000e+00 | 1048.0 |
33 | TraesCS3B01G194300 | chr5D | 82.396 | 818 | 97 | 24 | 2118 | 2918 | 72212140 | 72212927 | 0.000000e+00 | 669.0 |
34 | TraesCS3B01G194300 | chr5D | 84.541 | 414 | 48 | 9 | 3378 | 3779 | 72213049 | 72213458 | 5.720000e-106 | 396.0 |
35 | TraesCS3B01G194300 | chr5D | 88.482 | 191 | 18 | 3 | 3171 | 3358 | 439665898 | 439665709 | 2.210000e-55 | 228.0 |
36 | TraesCS3B01G194300 | chr5D | 93.023 | 43 | 2 | 1 | 3346 | 3387 | 191930717 | 191930759 | 2.370000e-05 | 62.1 |
37 | TraesCS3B01G194300 | chr5A | 79.405 | 1646 | 215 | 78 | 4298 | 5915 | 64758432 | 64759981 | 0.000000e+00 | 1048.0 |
38 | TraesCS3B01G194300 | chr5A | 82.288 | 813 | 97 | 22 | 2122 | 2918 | 64756751 | 64757532 | 0.000000e+00 | 660.0 |
39 | TraesCS3B01G194300 | chr5A | 86.339 | 183 | 20 | 5 | 3378 | 3558 | 64757657 | 64757836 | 2.240000e-45 | 195.0 |
40 | TraesCS3B01G194300 | chr5A | 85.492 | 193 | 16 | 7 | 3171 | 3358 | 555557539 | 555557354 | 2.890000e-44 | 191.0 |
41 | TraesCS3B01G194300 | chr5A | 97.674 | 43 | 1 | 0 | 3079 | 3121 | 493354822 | 493354780 | 3.040000e-09 | 75.0 |
42 | TraesCS3B01G194300 | chr5A | 100.000 | 31 | 0 | 0 | 3356 | 3386 | 606906105 | 606906075 | 3.060000e-04 | 58.4 |
43 | TraesCS3B01G194300 | chr1D | 78.785 | 1136 | 188 | 40 | 4760 | 5875 | 31333170 | 31332068 | 0.000000e+00 | 713.0 |
44 | TraesCS3B01G194300 | chr1D | 86.780 | 295 | 34 | 4 | 2626 | 2918 | 105159961 | 105159670 | 2.740000e-84 | 324.0 |
45 | TraesCS3B01G194300 | chr1D | 84.451 | 328 | 41 | 8 | 2458 | 2776 | 105968815 | 105968489 | 1.650000e-81 | 315.0 |
46 | TraesCS3B01G194300 | chr1D | 77.677 | 551 | 91 | 23 | 5040 | 5584 | 31345823 | 31345299 | 2.750000e-79 | 307.0 |
47 | TraesCS3B01G194300 | chr1D | 84.281 | 299 | 42 | 5 | 5033 | 5328 | 31327966 | 31327670 | 3.590000e-73 | 287.0 |
48 | TraesCS3B01G194300 | chr1D | 82.822 | 326 | 44 | 10 | 2458 | 2776 | 105352839 | 105352519 | 1.670000e-71 | 281.0 |
49 | TraesCS3B01G194300 | chr1D | 78.068 | 383 | 71 | 7 | 3408 | 3782 | 105352056 | 105351679 | 6.130000e-56 | 230.0 |
50 | TraesCS3B01G194300 | chr1D | 89.610 | 77 | 8 | 0 | 2441 | 2517 | 105160037 | 105159961 | 1.800000e-16 | 99.0 |
51 | TraesCS3B01G194300 | chr1B | 77.892 | 778 | 133 | 22 | 4925 | 5683 | 604145997 | 604145240 | 1.560000e-121 | 448.0 |
52 | TraesCS3B01G194300 | chr1B | 87.415 | 294 | 35 | 2 | 2626 | 2917 | 161498234 | 161498527 | 3.510000e-88 | 337.0 |
53 | TraesCS3B01G194300 | chr1B | 87.415 | 294 | 35 | 2 | 2626 | 2917 | 161541530 | 161541823 | 3.510000e-88 | 337.0 |
54 | TraesCS3B01G194300 | chr1B | 87.762 | 286 | 33 | 2 | 2626 | 2909 | 161584431 | 161584716 | 4.540000e-87 | 333.0 |
55 | TraesCS3B01G194300 | chr1B | 91.304 | 69 | 5 | 1 | 6694 | 6761 | 487679428 | 487679360 | 8.400000e-15 | 93.5 |
56 | TraesCS3B01G194300 | chr1B | 93.478 | 46 | 3 | 0 | 3349 | 3394 | 12787768 | 12787723 | 1.420000e-07 | 69.4 |
57 | TraesCS3B01G194300 | chr1A | 78.057 | 597 | 81 | 30 | 4559 | 5137 | 30636727 | 30636163 | 1.630000e-86 | 331.0 |
58 | TraesCS3B01G194300 | chr1A | 79.279 | 222 | 36 | 7 | 2441 | 2656 | 30642751 | 30642534 | 6.350000e-31 | 147.0 |
59 | TraesCS3B01G194300 | chr7D | 81.223 | 229 | 24 | 14 | 3073 | 3286 | 566469471 | 566469695 | 4.880000e-37 | 167.0 |
60 | TraesCS3B01G194300 | chr7D | 92.727 | 55 | 4 | 0 | 6696 | 6750 | 106798729 | 106798675 | 6.540000e-11 | 80.5 |
61 | TraesCS3B01G194300 | chr7D | 95.122 | 41 | 1 | 1 | 6721 | 6761 | 26731131 | 26731170 | 6.580000e-06 | 63.9 |
62 | TraesCS3B01G194300 | chr2A | 81.731 | 208 | 29 | 8 | 3189 | 3389 | 753597264 | 753597059 | 1.750000e-36 | 165.0 |
63 | TraesCS3B01G194300 | chr2A | 93.182 | 44 | 2 | 1 | 6718 | 6761 | 89451490 | 89451532 | 6.580000e-06 | 63.9 |
64 | TraesCS3B01G194300 | chr6D | 93.243 | 74 | 5 | 0 | 6688 | 6761 | 8551026 | 8551099 | 8.340000e-20 | 110.0 |
65 | TraesCS3B01G194300 | chr6D | 97.436 | 39 | 1 | 0 | 6134 | 6172 | 376632576 | 376632538 | 5.090000e-07 | 67.6 |
66 | TraesCS3B01G194300 | chr2B | 81.250 | 144 | 8 | 13 | 3069 | 3198 | 226691291 | 226691153 | 1.800000e-16 | 99.0 |
67 | TraesCS3B01G194300 | chr2B | 95.122 | 41 | 2 | 0 | 6721 | 6761 | 48871851 | 48871811 | 1.830000e-06 | 65.8 |
68 | TraesCS3B01G194300 | chr2B | 88.679 | 53 | 2 | 4 | 3353 | 3403 | 278859856 | 278859806 | 2.370000e-05 | 62.1 |
69 | TraesCS3B01G194300 | chr2B | 79.381 | 97 | 8 | 8 | 6684 | 6769 | 168852032 | 168851937 | 3.060000e-04 | 58.4 |
70 | TraesCS3B01G194300 | chr2B | 96.970 | 33 | 1 | 0 | 6687 | 6719 | 799161046 | 799161078 | 1.000000e-03 | 56.5 |
71 | TraesCS3B01G194300 | chr2B | 96.970 | 33 | 1 | 0 | 6687 | 6719 | 799214202 | 799214234 | 1.000000e-03 | 56.5 |
72 | TraesCS3B01G194300 | chr7B | 76.016 | 246 | 24 | 19 | 3073 | 3286 | 620680930 | 620680688 | 2.330000e-15 | 95.3 |
73 | TraesCS3B01G194300 | chr7B | 94.595 | 37 | 1 | 1 | 6685 | 6721 | 726287467 | 726287502 | 1.000000e-03 | 56.5 |
74 | TraesCS3B01G194300 | chr2D | 79.592 | 147 | 11 | 8 | 3069 | 3198 | 170621993 | 170622137 | 3.910000e-13 | 87.9 |
75 | TraesCS3B01G194300 | chr2D | 97.143 | 35 | 0 | 1 | 3353 | 3386 | 586782164 | 586782198 | 3.060000e-04 | 58.4 |
76 | TraesCS3B01G194300 | chr4A | 92.157 | 51 | 3 | 1 | 6721 | 6771 | 741977242 | 741977291 | 3.930000e-08 | 71.3 |
77 | TraesCS3B01G194300 | chr4A | 93.182 | 44 | 2 | 1 | 6718 | 6761 | 68291213 | 68291255 | 6.580000e-06 | 63.9 |
78 | TraesCS3B01G194300 | chr6B | 100.000 | 32 | 0 | 0 | 6688 | 6719 | 657249942 | 657249973 | 8.520000e-05 | 60.2 |
79 | TraesCS3B01G194300 | chrUn | 96.970 | 33 | 1 | 0 | 6687 | 6719 | 23900844 | 23900876 | 1.000000e-03 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G194300 | chr3B | 214551622 | 214559480 | 7858 | False | 14513.000000 | 14513 | 100.000000 | 1 | 7859 | 1 | chr3B.!!$F1 | 7858 |
1 | TraesCS3B01G194300 | chr3A | 165332371 | 165341717 | 9346 | False | 1254.875000 | 7433 | 89.071500 | 3 | 7600 | 8 | chr3A.!!$F4 | 7597 |
2 | TraesCS3B01G194300 | chr3A | 155418100 | 155418963 | 863 | True | 501.000000 | 501 | 77.480000 | 4969 | 5859 | 1 | chr3A.!!$R1 | 890 |
3 | TraesCS3B01G194300 | chr3D | 147821986 | 147830367 | 8381 | True | 1281.875000 | 7206 | 91.328750 | 1 | 7859 | 8 | chr3D.!!$R1 | 7858 |
4 | TraesCS3B01G194300 | chr4B | 73482574 | 73484526 | 1952 | False | 807.500000 | 1393 | 84.840500 | 4087 | 6112 | 2 | chr4B.!!$F1 | 2025 |
5 | TraesCS3B01G194300 | chr5B | 82237629 | 82240842 | 3213 | True | 850.000000 | 1064 | 80.623000 | 2118 | 5915 | 2 | chr5B.!!$R2 | 3797 |
6 | TraesCS3B01G194300 | chr5D | 72212140 | 72215338 | 3198 | False | 704.333333 | 1048 | 82.125667 | 2118 | 5915 | 3 | chr5D.!!$F2 | 3797 |
7 | TraesCS3B01G194300 | chr5A | 64756751 | 64759981 | 3230 | False | 634.333333 | 1048 | 82.677333 | 2122 | 5915 | 3 | chr5A.!!$F1 | 3793 |
8 | TraesCS3B01G194300 | chr1D | 31332068 | 31333170 | 1102 | True | 713.000000 | 713 | 78.785000 | 4760 | 5875 | 1 | chr1D.!!$R2 | 1115 |
9 | TraesCS3B01G194300 | chr1D | 31345299 | 31345823 | 524 | True | 307.000000 | 307 | 77.677000 | 5040 | 5584 | 1 | chr1D.!!$R3 | 544 |
10 | TraesCS3B01G194300 | chr1D | 105351679 | 105352839 | 1160 | True | 255.500000 | 281 | 80.445000 | 2458 | 3782 | 2 | chr1D.!!$R6 | 1324 |
11 | TraesCS3B01G194300 | chr1B | 604145240 | 604145997 | 757 | True | 448.000000 | 448 | 77.892000 | 4925 | 5683 | 1 | chr1B.!!$R3 | 758 |
12 | TraesCS3B01G194300 | chr1A | 30636163 | 30636727 | 564 | True | 331.000000 | 331 | 78.057000 | 4559 | 5137 | 1 | chr1A.!!$R1 | 578 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
706 | 1304 | 0.107214 | TCAATCTTCATCCCACCGGC | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 | F |
1427 | 2246 | 0.251916 | TCAATTCGCCGATGTCCCTT | 59.748 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 | F |
1742 | 2581 | 0.373716 | GGATTGTTGTCCGCATCGAC | 59.626 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 | F |
2341 | 3194 | 0.455410 | TTGTATGCAGATTTGGCGCC | 59.545 | 50.000 | 22.73 | 22.73 | 0.00 | 6.53 | F |
3165 | 4248 | 0.682209 | ACCACATGCAAGCCCTCATC | 60.682 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 | F |
3198 | 4281 | 2.238646 | AGCCCTCCACGTCATCAATTTA | 59.761 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 | F |
4267 | 5463 | 3.391296 | AGTCCAGCTCCTGTCAACTTTTA | 59.609 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 | F |
6206 | 7526 | 0.472044 | TGCTGTCCAACAGGCTACAA | 59.528 | 50.000 | 9.01 | 0.00 | 46.01 | 2.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1544 | 2383 | 0.108520 | AAATCTGCATTTGGCTGCCG | 60.109 | 50.000 | 14.98 | 0.00 | 45.15 | 5.69 | R |
3139 | 4215 | 0.319813 | GCTTGCATGTGGTGGGAAAC | 60.320 | 55.000 | 1.14 | 0.00 | 0.00 | 2.78 | R |
3165 | 4248 | 1.214589 | GAGGGCTTGCATGTGCTTG | 59.785 | 57.895 | 6.55 | 0.57 | 42.66 | 4.01 | R |
3997 | 5147 | 1.242076 | AGGTCTGCACACTTGATTGC | 58.758 | 50.000 | 0.00 | 0.00 | 39.33 | 3.56 | R |
4325 | 5524 | 2.346803 | CCCGACACACAATTAGACTGG | 58.653 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 | R |
4480 | 5686 | 2.687425 | TGCCGCATGTATTTAGCAATGT | 59.313 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 | R |
6224 | 7544 | 1.345089 | TGGGTGATTTCTCCGTTTCGA | 59.655 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 | R |
7463 | 10493 | 0.104120 | TGGCACTGATTATCCGTCCG | 59.896 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
48 | 49 | 8.469200 | CCTGTATTTGTTCACAATACATCCAAT | 58.531 | 33.333 | 6.07 | 0.00 | 35.55 | 3.16 |
54 | 55 | 5.632764 | TGTTCACAATACATCCAATTTTGCG | 59.367 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
107 | 108 | 6.270000 | TCTTTCCTGTGTCTAGAGATTTTCCA | 59.730 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
112 | 113 | 6.314896 | CCTGTGTCTAGAGATTTTCCATTGAC | 59.685 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
158 | 159 | 0.520619 | GTGCTACTAAAAAGCGGCGC | 60.521 | 55.000 | 26.86 | 26.86 | 43.11 | 6.53 |
184 | 185 | 3.654414 | GGTTGATCATCCGGTACTGATC | 58.346 | 50.000 | 24.72 | 24.72 | 45.18 | 2.92 |
190 | 191 | 4.336889 | TCATCCGGTACTGATCATTTCC | 57.663 | 45.455 | 2.31 | 0.00 | 27.15 | 3.13 |
191 | 192 | 3.967326 | TCATCCGGTACTGATCATTTCCT | 59.033 | 43.478 | 2.31 | 0.00 | 27.15 | 3.36 |
192 | 193 | 4.408921 | TCATCCGGTACTGATCATTTCCTT | 59.591 | 41.667 | 2.31 | 0.00 | 27.15 | 3.36 |
197 | 198 | 6.765989 | TCCGGTACTGATCATTTCCTTTTATG | 59.234 | 38.462 | 2.31 | 0.00 | 0.00 | 1.90 |
199 | 200 | 7.713507 | CCGGTACTGATCATTTCCTTTTATGTA | 59.286 | 37.037 | 2.31 | 0.00 | 0.00 | 2.29 |
250 | 437 | 4.766891 | GTCCATCATTTCCTTTTCTGTGGA | 59.233 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
265 | 452 | 9.323985 | CTTTTCTGTGGATAGAGATTTTCCTAG | 57.676 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
288 | 475 | 5.299531 | AGCACTACTAGTTGCTTCGATGATA | 59.700 | 40.000 | 14.96 | 0.00 | 31.73 | 2.15 |
344 | 531 | 0.179145 | ATCCTTCTAACACCGCGACG | 60.179 | 55.000 | 8.23 | 0.00 | 0.00 | 5.12 |
418 | 605 | 5.128919 | AGCATCAGCCTCTAATAAAAGTGG | 58.871 | 41.667 | 0.00 | 0.00 | 43.56 | 4.00 |
422 | 609 | 7.254932 | GCATCAGCCTCTAATAAAAGTGGTAAG | 60.255 | 40.741 | 0.00 | 0.00 | 33.53 | 2.34 |
476 | 681 | 2.416547 | CGTCCATACAGCTGAAAACCTG | 59.583 | 50.000 | 23.35 | 7.71 | 35.26 | 4.00 |
532 | 737 | 1.736645 | CGAAACTCGCCATCCACGT | 60.737 | 57.895 | 0.00 | 0.00 | 31.14 | 4.49 |
553 | 758 | 1.224592 | CCCTGCCGCAGAAACCTAT | 59.775 | 57.895 | 22.35 | 0.00 | 32.44 | 2.57 |
567 | 772 | 0.314302 | ACCTATCGGCGGAAATCGAG | 59.686 | 55.000 | 7.21 | 0.00 | 42.43 | 4.04 |
591 | 796 | 3.133003 | ACGAGACTGGAATGGATTCGAAT | 59.867 | 43.478 | 11.20 | 11.20 | 37.67 | 3.34 |
603 | 808 | 2.576615 | GATTCGAATGGGGGAGGAAAG | 58.423 | 52.381 | 16.96 | 0.00 | 0.00 | 2.62 |
604 | 809 | 0.623723 | TTCGAATGGGGGAGGAAAGG | 59.376 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
605 | 810 | 1.227383 | CGAATGGGGGAGGAAAGGG | 59.773 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
606 | 811 | 1.279025 | CGAATGGGGGAGGAAAGGGA | 61.279 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
607 | 812 | 0.259065 | GAATGGGGGAGGAAAGGGAC | 59.741 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
608 | 813 | 1.571773 | AATGGGGGAGGAAAGGGACG | 61.572 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
609 | 814 | 3.408853 | GGGGGAGGAAAGGGACGG | 61.409 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
610 | 815 | 4.111053 | GGGGAGGAAAGGGACGGC | 62.111 | 72.222 | 0.00 | 0.00 | 0.00 | 5.68 |
611 | 816 | 4.468689 | GGGAGGAAAGGGACGGCG | 62.469 | 72.222 | 4.80 | 4.80 | 0.00 | 6.46 |
612 | 817 | 4.468689 | GGAGGAAAGGGACGGCGG | 62.469 | 72.222 | 13.24 | 0.00 | 0.00 | 6.13 |
629 | 1227 | 2.123428 | GGCGCGGGAGTACCTCTTA | 61.123 | 63.158 | 8.83 | 0.00 | 36.97 | 2.10 |
706 | 1304 | 0.107214 | TCAATCTTCATCCCACCGGC | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
746 | 1377 | 0.636647 | GGATTTGGGGGAGATGGGTT | 59.363 | 55.000 | 0.00 | 0.00 | 0.00 | 4.11 |
777 | 1408 | 1.272480 | CCCTCCCAAACCTTAACCTGG | 60.272 | 57.143 | 0.00 | 0.00 | 0.00 | 4.45 |
802 | 1433 | 2.738521 | CCGAACTGAGGTGCCGTG | 60.739 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
803 | 1434 | 2.738521 | CGAACTGAGGTGCCGTGG | 60.739 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
804 | 1435 | 3.050275 | GAACTGAGGTGCCGTGGC | 61.050 | 66.667 | 3.30 | 3.30 | 42.35 | 5.01 |
806 | 1437 | 3.537206 | AACTGAGGTGCCGTGGCTC | 62.537 | 63.158 | 12.84 | 8.48 | 42.51 | 4.70 |
852 | 1485 | 2.856032 | CGAAGCTGCAACAGACCG | 59.144 | 61.111 | 1.02 | 0.00 | 32.44 | 4.79 |
853 | 1486 | 2.558313 | GAAGCTGCAACAGACCGC | 59.442 | 61.111 | 1.02 | 0.00 | 32.44 | 5.68 |
856 | 1489 | 4.030452 | GCTGCAACAGACCGCCAC | 62.030 | 66.667 | 0.00 | 0.00 | 32.44 | 5.01 |
857 | 1490 | 3.357079 | CTGCAACAGACCGCCACC | 61.357 | 66.667 | 0.00 | 0.00 | 32.44 | 4.61 |
858 | 1491 | 4.182433 | TGCAACAGACCGCCACCA | 62.182 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
859 | 1492 | 3.660111 | GCAACAGACCGCCACCAC | 61.660 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
861 | 1494 | 3.168528 | AACAGACCGCCACCACCT | 61.169 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
862 | 1495 | 3.476031 | AACAGACCGCCACCACCTG | 62.476 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
865 | 1498 | 4.947147 | GACCGCCACCACCTGCAA | 62.947 | 66.667 | 0.00 | 0.00 | 0.00 | 4.08 |
905 | 1546 | 1.812922 | GACTGCGGCCTGATGAGTG | 60.813 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
906 | 1547 | 3.200593 | CTGCGGCCTGATGAGTGC | 61.201 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
907 | 1548 | 3.963687 | CTGCGGCCTGATGAGTGCA | 62.964 | 63.158 | 0.00 | 0.00 | 0.00 | 4.57 |
908 | 1549 | 2.747460 | GCGGCCTGATGAGTGCAA | 60.747 | 61.111 | 0.00 | 0.00 | 0.00 | 4.08 |
909 | 1550 | 2.758089 | GCGGCCTGATGAGTGCAAG | 61.758 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
910 | 1551 | 2.758089 | CGGCCTGATGAGTGCAAGC | 61.758 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
911 | 1552 | 2.758089 | GGCCTGATGAGTGCAAGCG | 61.758 | 63.158 | 0.00 | 0.00 | 0.00 | 4.68 |
912 | 1553 | 2.758089 | GCCTGATGAGTGCAAGCGG | 61.758 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
913 | 1554 | 2.758089 | CCTGATGAGTGCAAGCGGC | 61.758 | 63.158 | 0.00 | 0.00 | 45.13 | 6.53 |
914 | 1555 | 2.747460 | TGATGAGTGCAAGCGGCC | 60.747 | 61.111 | 0.00 | 0.00 | 43.89 | 6.13 |
915 | 1556 | 3.512516 | GATGAGTGCAAGCGGCCC | 61.513 | 66.667 | 0.00 | 0.00 | 43.89 | 5.80 |
916 | 1557 | 3.984193 | GATGAGTGCAAGCGGCCCT | 62.984 | 63.158 | 0.00 | 0.00 | 43.89 | 5.19 |
917 | 1558 | 3.574074 | ATGAGTGCAAGCGGCCCTT | 62.574 | 57.895 | 0.00 | 0.00 | 43.89 | 3.95 |
921 | 1562 | 3.640407 | TGCAAGCGGCCCTTCTCT | 61.640 | 61.111 | 0.00 | 0.00 | 43.89 | 3.10 |
935 | 1576 | 4.565022 | CCCTTCTCTTCTGTTTCTGAGAC | 58.435 | 47.826 | 0.00 | 0.00 | 35.60 | 3.36 |
938 | 1579 | 4.757799 | TCTCTTCTGTTTCTGAGACTCG | 57.242 | 45.455 | 0.00 | 0.00 | 31.53 | 4.18 |
947 | 1588 | 6.868864 | TCTGTTTCTGAGACTCGGATAAAAAG | 59.131 | 38.462 | 14.79 | 11.24 | 30.80 | 2.27 |
949 | 1590 | 5.995565 | TTCTGAGACTCGGATAAAAAGGA | 57.004 | 39.130 | 14.79 | 0.00 | 30.80 | 3.36 |
950 | 1591 | 5.326200 | TCTGAGACTCGGATAAAAAGGAC | 57.674 | 43.478 | 10.07 | 0.00 | 0.00 | 3.85 |
951 | 1592 | 5.017490 | TCTGAGACTCGGATAAAAAGGACT | 58.983 | 41.667 | 10.07 | 0.00 | 0.00 | 3.85 |
953 | 1594 | 3.863041 | AGACTCGGATAAAAAGGACTGC | 58.137 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
954 | 1595 | 3.260884 | AGACTCGGATAAAAAGGACTGCA | 59.739 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
972 | 1780 | 4.081420 | ACTGCACAAGTTCAGATAGTAGGG | 60.081 | 45.833 | 6.85 | 0.00 | 34.57 | 3.53 |
973 | 1781 | 3.838317 | TGCACAAGTTCAGATAGTAGGGT | 59.162 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
975 | 1783 | 4.680975 | GCACAAGTTCAGATAGTAGGGTCC | 60.681 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
976 | 1784 | 4.712337 | CACAAGTTCAGATAGTAGGGTCCT | 59.288 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
1112 | 1928 | 1.221781 | AGCTATAGAGTTCCTGCCCCT | 59.778 | 52.381 | 3.21 | 0.00 | 0.00 | 4.79 |
1113 | 1929 | 1.621317 | GCTATAGAGTTCCTGCCCCTC | 59.379 | 57.143 | 3.21 | 0.00 | 0.00 | 4.30 |
1145 | 1961 | 3.382865 | TCTCTGAATCGATCCAAGACCAG | 59.617 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
1193 | 2009 | 2.757868 | CTCCAGACTCCAGATTCGAAGT | 59.242 | 50.000 | 3.35 | 0.00 | 0.00 | 3.01 |
1261 | 2077 | 2.290008 | TGGACACGGTTAGGTACGTCTA | 60.290 | 50.000 | 0.00 | 0.00 | 42.04 | 2.59 |
1270 | 2086 | 4.497300 | GTTAGGTACGTCTACATGCCAAA | 58.503 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
1279 | 2095 | 4.497300 | GTCTACATGCCAAATTGCAATGT | 58.503 | 39.130 | 13.82 | 3.97 | 45.84 | 2.71 |
1299 | 2115 | 1.269448 | TCCTGTTCTTTTTCCATGCGC | 59.731 | 47.619 | 0.00 | 0.00 | 0.00 | 6.09 |
1316 | 2132 | 1.436336 | GCCCGCACGACTACTGTAT | 59.564 | 57.895 | 0.00 | 0.00 | 0.00 | 2.29 |
1317 | 2133 | 0.870307 | GCCCGCACGACTACTGTATG | 60.870 | 60.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1330 | 2149 | 7.148255 | ACGACTACTGTATGTAACCAATAACGA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
1341 | 2160 | 2.482721 | ACCAATAACGAAGCAACGGAAG | 59.517 | 45.455 | 7.39 | 0.00 | 37.61 | 3.46 |
1355 | 2174 | 1.221466 | CGGAAGTTCAACGCTCAGCA | 61.221 | 55.000 | 5.01 | 0.00 | 0.00 | 4.41 |
1369 | 2188 | 3.572584 | GCTCAGCATTCAAACAGAAAGG | 58.427 | 45.455 | 0.00 | 0.00 | 40.22 | 3.11 |
1380 | 2199 | 3.843893 | AACAGAAAGGGCAAAAGCATT | 57.156 | 38.095 | 0.00 | 0.00 | 0.00 | 3.56 |
1405 | 2224 | 6.551385 | CAATGTCCTATTGCTGATTCCTAC | 57.449 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
1426 | 2245 | 0.462047 | GTCAATTCGCCGATGTCCCT | 60.462 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1427 | 2246 | 0.251916 | TCAATTCGCCGATGTCCCTT | 59.748 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1428 | 2247 | 0.657840 | CAATTCGCCGATGTCCCTTC | 59.342 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1429 | 2248 | 0.463833 | AATTCGCCGATGTCCCTTCC | 60.464 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1442 | 2281 | 1.854939 | TCCCTTCCTGTATCGGTAGGA | 59.145 | 52.381 | 4.31 | 0.00 | 42.47 | 2.94 |
1464 | 2303 | 5.944007 | GGATGGGTGTTTGACAGTAGTAATT | 59.056 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1472 | 2311 | 9.434559 | GTGTTTGACAGTAGTAATTTCAACTTC | 57.565 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1478 | 2317 | 8.535690 | ACAGTAGTAATTTCAACTTCACTAGC | 57.464 | 34.615 | 0.00 | 0.00 | 0.00 | 3.42 |
1482 | 2321 | 7.426929 | AGTAATTTCAACTTCACTAGCACAG | 57.573 | 36.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1486 | 2325 | 2.965831 | TCAACTTCACTAGCACAGTCCT | 59.034 | 45.455 | 0.00 | 0.00 | 34.26 | 3.85 |
1539 | 2378 | 9.046296 | AGCTAGTTTATGATAGCAAATGTACAC | 57.954 | 33.333 | 0.00 | 0.00 | 45.54 | 2.90 |
1544 | 2383 | 9.072294 | GTTTATGATAGCAAATGTACACAAACC | 57.928 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
1549 | 2388 | 2.660490 | CAAATGTACACAAACCGGCAG | 58.340 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
1552 | 2391 | 1.894756 | GTACACAAACCGGCAGCCA | 60.895 | 57.895 | 13.30 | 0.00 | 0.00 | 4.75 |
1599 | 2438 | 8.259411 | TCAAAAATCTATACCGCCACTTTACTA | 58.741 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1600 | 2439 | 9.052759 | CAAAAATCTATACCGCCACTTTACTAT | 57.947 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
1611 | 2450 | 7.441458 | ACCGCCACTTTACTATATGATTTTCTC | 59.559 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
1648 | 2487 | 3.795101 | AGAACACGTTTCTTGTAGTGTCG | 59.205 | 43.478 | 7.04 | 0.00 | 45.74 | 4.35 |
1658 | 2497 | 1.153429 | GTAGTGTCGGGTGATGGCC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
1664 | 2503 | 2.034066 | CGGGTGATGGCCAACAGT | 59.966 | 61.111 | 17.13 | 0.00 | 32.95 | 3.55 |
1688 | 2527 | 6.096987 | GTGAGTATGAGTATGTGAAGAGGGAA | 59.903 | 42.308 | 0.00 | 0.00 | 0.00 | 3.97 |
1691 | 2530 | 8.095452 | AGTATGAGTATGTGAAGAGGGAATTT | 57.905 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1727 | 2566 | 2.677228 | CCGGCCTCCAACTGGATT | 59.323 | 61.111 | 0.00 | 0.00 | 44.46 | 3.01 |
1742 | 2581 | 0.373716 | GGATTGTTGTCCGCATCGAC | 59.626 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1754 | 2593 | 1.802636 | CATCGACGGCTGCCATTTT | 59.197 | 52.632 | 20.29 | 0.00 | 0.00 | 1.82 |
1765 | 2604 | 2.290641 | GCTGCCATTTTCACCGGTATAG | 59.709 | 50.000 | 6.87 | 0.00 | 0.00 | 1.31 |
1790 | 2634 | 4.172041 | TCATCTCTTCCCCAGGGTAATAGA | 59.828 | 45.833 | 4.22 | 2.78 | 36.47 | 1.98 |
1839 | 2685 | 3.719173 | TTTTTCCGCAACCCTGTTAAG | 57.281 | 42.857 | 0.00 | 0.00 | 0.00 | 1.85 |
1857 | 2703 | 7.362401 | CCTGTTAAGTGATTGCTGCTTTCTATT | 60.362 | 37.037 | 0.00 | 0.71 | 0.00 | 1.73 |
1863 | 2709 | 7.222872 | AGTGATTGCTGCTTTCTATTATAGCT | 58.777 | 34.615 | 0.00 | 0.00 | 35.93 | 3.32 |
1868 | 2714 | 8.768957 | TTGCTGCTTTCTATTATAGCTGATAG | 57.231 | 34.615 | 0.00 | 1.89 | 36.36 | 2.08 |
1898 | 2744 | 2.486982 | CCTTGACTGGTTGCTCTCATTG | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
1945 | 2791 | 4.402793 | ACACTGATATGGTCACTAGTGGTC | 59.597 | 45.833 | 22.48 | 15.08 | 35.79 | 4.02 |
2007 | 2853 | 5.698545 | GGTCTAGTTCATGCACCAATATCTC | 59.301 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
2017 | 2863 | 3.314635 | GCACCAATATCTCTTGCTTGAGG | 59.685 | 47.826 | 6.68 | 0.00 | 34.98 | 3.86 |
2018 | 2864 | 3.881688 | CACCAATATCTCTTGCTTGAGGG | 59.118 | 47.826 | 6.68 | 3.17 | 34.98 | 4.30 |
2059 | 2905 | 7.422465 | ACATATGGGAAACATGCAAATAAGT | 57.578 | 32.000 | 7.80 | 0.00 | 40.82 | 2.24 |
2101 | 2947 | 4.517285 | GGATCACTGTTGCTCCAGATTAA | 58.483 | 43.478 | 9.71 | 0.00 | 37.87 | 1.40 |
2201 | 3047 | 5.246656 | TGCCTTTGAGAAACCAAATGATGAT | 59.753 | 36.000 | 0.00 | 0.00 | 35.72 | 2.45 |
2339 | 3192 | 4.626604 | ACAAAATTGTATGCAGATTTGGCG | 59.373 | 37.500 | 19.71 | 9.29 | 40.16 | 5.69 |
2340 | 3193 | 2.497107 | ATTGTATGCAGATTTGGCGC | 57.503 | 45.000 | 0.00 | 0.00 | 0.00 | 6.53 |
2341 | 3194 | 0.455410 | TTGTATGCAGATTTGGCGCC | 59.545 | 50.000 | 22.73 | 22.73 | 0.00 | 6.53 |
2377 | 3230 | 2.661195 | GCAAATACCGTTGTGAATGCAC | 59.339 | 45.455 | 0.00 | 0.00 | 45.35 | 4.57 |
2413 | 3266 | 1.376037 | GCAGGTCCCGTTCTTCCTG | 60.376 | 63.158 | 5.79 | 5.79 | 46.96 | 3.86 |
2423 | 3276 | 3.003378 | CCCGTTCTTCCTGTTTGAAAGAC | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
2585 | 3446 | 1.202976 | GGATACTGCCATGCCCAGAAT | 60.203 | 52.381 | 15.80 | 0.91 | 34.47 | 2.40 |
2641 | 3503 | 8.861086 | TCATCTTATTGACTCTCTACCAATACC | 58.139 | 37.037 | 0.00 | 0.00 | 33.89 | 2.73 |
3139 | 4215 | 2.287608 | GCAACCCTTTCACTTTCTTCCG | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3140 | 4216 | 2.949644 | CAACCCTTTCACTTTCTTCCGT | 59.050 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
3165 | 4248 | 0.682209 | ACCACATGCAAGCCCTCATC | 60.682 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3198 | 4281 | 2.238646 | AGCCCTCCACGTCATCAATTTA | 59.761 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
3200 | 4283 | 3.632145 | GCCCTCCACGTCATCAATTTATT | 59.368 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3203 | 4286 | 6.035843 | CCCTCCACGTCATCAATTTATTTTG | 58.964 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3205 | 4288 | 6.527722 | CCTCCACGTCATCAATTTATTTTGTG | 59.472 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
3316 | 4411 | 3.859443 | TCATATGGCAAAAATGTGGTGC | 58.141 | 40.909 | 2.13 | 0.00 | 37.55 | 5.01 |
3324 | 4419 | 4.429108 | GCAAAAATGTGGTGCGGTATTAT | 58.571 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
3529 | 4625 | 4.758674 | ACAACAGACATTGAAGGTCATCTG | 59.241 | 41.667 | 12.74 | 7.96 | 37.17 | 2.90 |
3571 | 4696 | 7.951591 | AGGTGTCTTTTTGTAGCATTTGTATT | 58.048 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
3572 | 4697 | 8.421002 | AGGTGTCTTTTTGTAGCATTTGTATTT | 58.579 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3573 | 4698 | 9.040939 | GGTGTCTTTTTGTAGCATTTGTATTTT | 57.959 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
3606 | 4741 | 4.482952 | ACCGTCTATTTTCTTGTAGGGG | 57.517 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
3720 | 4855 | 8.189460 | AGTGTTTATCGAGATAAGGTAACACTC | 58.811 | 37.037 | 22.48 | 12.23 | 42.21 | 3.51 |
3760 | 4895 | 6.656314 | TCATTATTATTGACGTTCGTGCTT | 57.344 | 33.333 | 1.74 | 0.00 | 0.00 | 3.91 |
3786 | 4922 | 7.895975 | TTCTCAGTGAAGATTTACATCACAG | 57.104 | 36.000 | 7.75 | 0.25 | 45.85 | 3.66 |
3985 | 5135 | 8.857098 | CCATTTCCTTGTCTGATATTGATCAAT | 58.143 | 33.333 | 23.75 | 23.75 | 41.62 | 2.57 |
3990 | 5140 | 7.283807 | TCCTTGTCTGATATTGATCAATGGTTG | 59.716 | 37.037 | 27.59 | 15.98 | 41.62 | 3.77 |
3997 | 5147 | 8.161699 | TGATATTGATCAATGGTTGTGATGAG | 57.838 | 34.615 | 27.59 | 0.00 | 39.20 | 2.90 |
4155 | 5351 | 4.168760 | GCTGGCAATTACAGTGTCAAATC | 58.831 | 43.478 | 0.00 | 0.00 | 38.22 | 2.17 |
4267 | 5463 | 3.391296 | AGTCCAGCTCCTGTCAACTTTTA | 59.609 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
4325 | 5524 | 8.993121 | CCTGTCAACTTTGGATATATACATCAC | 58.007 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
4475 | 5681 | 6.353082 | CCAGTGAGGACCCTACTTTCATATTT | 60.353 | 42.308 | 0.00 | 0.00 | 41.22 | 1.40 |
4476 | 5682 | 7.147549 | CCAGTGAGGACCCTACTTTCATATTTA | 60.148 | 40.741 | 0.00 | 0.00 | 41.22 | 1.40 |
4477 | 5683 | 8.265055 | CAGTGAGGACCCTACTTTCATATTTAA | 58.735 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
4478 | 5684 | 8.832735 | AGTGAGGACCCTACTTTCATATTTAAA | 58.167 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
4479 | 5685 | 9.628500 | GTGAGGACCCTACTTTCATATTTAAAT | 57.372 | 33.333 | 5.89 | 5.89 | 0.00 | 1.40 |
4674 | 5885 | 7.175104 | TCCCTGATATTATCTTTGGTTATGGC | 58.825 | 38.462 | 5.33 | 0.00 | 0.00 | 4.40 |
4721 | 5932 | 2.877786 | TGCCCGTGCAACATATCTATTG | 59.122 | 45.455 | 0.00 | 0.00 | 46.66 | 1.90 |
4878 | 6090 | 2.270352 | AGCGAAGTGAACCATCCAAA | 57.730 | 45.000 | 0.00 | 0.00 | 0.00 | 3.28 |
5158 | 6402 | 7.648142 | TCATCATGTTTCACTTCCTTTTACAC | 58.352 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
5159 | 6403 | 7.284261 | TCATCATGTTTCACTTCCTTTTACACA | 59.716 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
5337 | 6586 | 8.293867 | TCTTTAACTAACCGAAAATGTCAATGG | 58.706 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
5348 | 6597 | 6.183360 | CGAAAATGTCAATGGACTTGTCGATA | 60.183 | 38.462 | 14.81 | 0.00 | 44.61 | 2.92 |
5402 | 6668 | 3.339253 | TGTCTGCAGCAGTATGAATGT | 57.661 | 42.857 | 22.10 | 0.00 | 39.69 | 2.71 |
5551 | 6845 | 7.201679 | CGAACCATAAGAAGAAAATGAGCTGAT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
5683 | 6991 | 8.992835 | AAGGTCTTCTTTCATCATTTAAATGC | 57.007 | 30.769 | 21.15 | 4.77 | 32.36 | 3.56 |
5976 | 7295 | 3.051081 | AGAAGCAAGACTGACATCACC | 57.949 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
5987 | 7307 | 5.128499 | AGACTGACATCACCTAAAGGATCAG | 59.872 | 44.000 | 2.23 | 9.44 | 38.94 | 2.90 |
6090 | 7410 | 4.441913 | CCATGTTGCCTGAAAAAGAACTGT | 60.442 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
6103 | 7423 | 4.533919 | AAGAACTGTGTCTGAGAGATGG | 57.466 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
6205 | 7525 | 0.692476 | ATGCTGTCCAACAGGCTACA | 59.308 | 50.000 | 9.01 | 0.00 | 46.01 | 2.74 |
6206 | 7526 | 0.472044 | TGCTGTCCAACAGGCTACAA | 59.528 | 50.000 | 9.01 | 0.00 | 46.01 | 2.41 |
6207 | 7527 | 1.133945 | TGCTGTCCAACAGGCTACAAA | 60.134 | 47.619 | 9.01 | 0.00 | 46.01 | 2.83 |
6208 | 7528 | 2.162681 | GCTGTCCAACAGGCTACAAAT | 58.837 | 47.619 | 9.01 | 0.00 | 46.01 | 2.32 |
6209 | 7529 | 2.162408 | GCTGTCCAACAGGCTACAAATC | 59.838 | 50.000 | 9.01 | 0.00 | 46.01 | 2.17 |
6210 | 7530 | 3.411446 | CTGTCCAACAGGCTACAAATCA | 58.589 | 45.455 | 0.00 | 0.00 | 42.35 | 2.57 |
6211 | 7531 | 3.146066 | TGTCCAACAGGCTACAAATCAC | 58.854 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
6212 | 7532 | 2.488153 | GTCCAACAGGCTACAAATCACC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
6213 | 7533 | 1.818674 | CCAACAGGCTACAAATCACCC | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
6214 | 7534 | 1.818674 | CAACAGGCTACAAATCACCCC | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 4.95 |
6215 | 7535 | 1.072266 | ACAGGCTACAAATCACCCCA | 58.928 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
6216 | 7536 | 1.427368 | ACAGGCTACAAATCACCCCAA | 59.573 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
6217 | 7537 | 2.158385 | ACAGGCTACAAATCACCCCAAA | 60.158 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
6218 | 7538 | 2.896685 | CAGGCTACAAATCACCCCAAAA | 59.103 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
6219 | 7539 | 3.323403 | CAGGCTACAAATCACCCCAAAAA | 59.677 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
6362 | 7684 | 3.937706 | CGTTGGAGCAGAAGATGATTCTT | 59.062 | 43.478 | 0.00 | 0.00 | 44.99 | 2.52 |
6415 | 7741 | 2.263540 | GCAAATGGCTGCAGGTGG | 59.736 | 61.111 | 17.12 | 0.00 | 42.17 | 4.61 |
6429 | 7755 | 0.616111 | AGGTGGAAGTGAGCGGAGAT | 60.616 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
6465 | 7791 | 1.304282 | GGATGTGGCAGTGACCCAT | 59.696 | 57.895 | 0.00 | 0.00 | 34.34 | 4.00 |
6545 | 7873 | 3.996150 | TTCGTACTTATTCTAGGCCGG | 57.004 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
6556 | 7884 | 0.179081 | CTAGGCCGGTTTGTAGCTCC | 60.179 | 60.000 | 1.90 | 0.00 | 0.00 | 4.70 |
6576 | 7904 | 4.539726 | TCCCATCATCCTCTGGAATTTTG | 58.460 | 43.478 | 0.00 | 0.00 | 34.34 | 2.44 |
6591 | 7919 | 7.939039 | TCTGGAATTTTGTCTAGAAACATCACT | 59.061 | 33.333 | 0.00 | 0.00 | 32.72 | 3.41 |
6666 | 7999 | 9.688592 | CCTTATCTACCGGTTTTATAAGTACTG | 57.311 | 37.037 | 25.75 | 15.48 | 31.25 | 2.74 |
6670 | 8003 | 8.807948 | TCTACCGGTTTTATAAGTACTGTACT | 57.192 | 34.615 | 15.04 | 14.53 | 41.73 | 2.73 |
6671 | 8004 | 9.899661 | TCTACCGGTTTTATAAGTACTGTACTA | 57.100 | 33.333 | 19.97 | 9.59 | 38.26 | 1.82 |
6673 | 8006 | 7.484140 | ACCGGTTTTATAAGTACTGTACTAGC | 58.516 | 38.462 | 19.97 | 11.91 | 38.26 | 3.42 |
6695 | 8028 | 4.161754 | GCTACCCTGAACACCTACATAACT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
6696 | 8029 | 5.361857 | GCTACCCTGAACACCTACATAACTA | 59.638 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
6697 | 8030 | 5.672421 | ACCCTGAACACCTACATAACTAC | 57.328 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
6698 | 8031 | 5.339477 | ACCCTGAACACCTACATAACTACT | 58.661 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
6699 | 8032 | 5.421374 | ACCCTGAACACCTACATAACTACTC | 59.579 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
6700 | 8033 | 5.163437 | CCCTGAACACCTACATAACTACTCC | 60.163 | 48.000 | 0.00 | 0.00 | 0.00 | 3.85 |
6701 | 8034 | 5.163437 | CCTGAACACCTACATAACTACTCCC | 60.163 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6702 | 8035 | 5.586877 | TGAACACCTACATAACTACTCCCT | 58.413 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
6703 | 8036 | 5.655532 | TGAACACCTACATAACTACTCCCTC | 59.344 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6704 | 8037 | 4.544683 | ACACCTACATAACTACTCCCTCC | 58.455 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
6705 | 8038 | 3.568853 | CACCTACATAACTACTCCCTCCG | 59.431 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
6706 | 8039 | 3.203934 | ACCTACATAACTACTCCCTCCGT | 59.796 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
6707 | 8040 | 3.819902 | CCTACATAACTACTCCCTCCGTC | 59.180 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
6708 | 8041 | 2.664015 | ACATAACTACTCCCTCCGTCC | 58.336 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
6709 | 8042 | 1.962100 | CATAACTACTCCCTCCGTCCC | 59.038 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
6710 | 8043 | 1.002069 | TAACTACTCCCTCCGTCCCA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
6711 | 8044 | 0.338814 | AACTACTCCCTCCGTCCCAT | 59.661 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
6712 | 8045 | 1.229131 | ACTACTCCCTCCGTCCCATA | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6713 | 8046 | 1.572415 | ACTACTCCCTCCGTCCCATAA | 59.428 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
6714 | 8047 | 2.179424 | ACTACTCCCTCCGTCCCATAAT | 59.821 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
6715 | 8048 | 1.424638 | ACTCCCTCCGTCCCATAATG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
6716 | 8049 | 1.344087 | ACTCCCTCCGTCCCATAATGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
6717 | 8050 | 2.090943 | ACTCCCTCCGTCCCATAATGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
6718 | 8051 | 2.969950 | CTCCCTCCGTCCCATAATGTAA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
6719 | 8052 | 2.701951 | TCCCTCCGTCCCATAATGTAAC | 59.298 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
6720 | 8053 | 2.704065 | CCCTCCGTCCCATAATGTAACT | 59.296 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
6721 | 8054 | 3.899360 | CCCTCCGTCCCATAATGTAACTA | 59.101 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
6722 | 8055 | 4.021368 | CCCTCCGTCCCATAATGTAACTAG | 60.021 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6723 | 8056 | 4.587684 | CCTCCGTCCCATAATGTAACTAGT | 59.412 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
6724 | 8057 | 5.509163 | CCTCCGTCCCATAATGTAACTAGTG | 60.509 | 48.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6725 | 8058 | 4.957954 | TCCGTCCCATAATGTAACTAGTGT | 59.042 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
6726 | 8059 | 5.068198 | TCCGTCCCATAATGTAACTAGTGTC | 59.932 | 44.000 | 0.00 | 0.00 | 0.00 | 3.67 |
6727 | 8060 | 5.163488 | CCGTCCCATAATGTAACTAGTGTCA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 3.58 |
6728 | 8061 | 6.334989 | CGTCCCATAATGTAACTAGTGTCAA | 58.665 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
6729 | 8062 | 6.814644 | CGTCCCATAATGTAACTAGTGTCAAA | 59.185 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
6730 | 8063 | 7.332430 | CGTCCCATAATGTAACTAGTGTCAAAA | 59.668 | 37.037 | 0.00 | 0.00 | 0.00 | 2.44 |
6731 | 8064 | 9.005777 | GTCCCATAATGTAACTAGTGTCAAAAA | 57.994 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
6752 | 8085 | 7.486802 | AAAAACGTCTTATATTACGGGATGG | 57.513 | 36.000 | 10.89 | 0.00 | 43.25 | 3.51 |
6753 | 8086 | 6.409524 | AAACGTCTTATATTACGGGATGGA | 57.590 | 37.500 | 10.89 | 0.00 | 43.25 | 3.41 |
6754 | 8087 | 5.640189 | ACGTCTTATATTACGGGATGGAG | 57.360 | 43.478 | 10.89 | 0.00 | 43.25 | 3.86 |
6755 | 8088 | 4.461781 | ACGTCTTATATTACGGGATGGAGG | 59.538 | 45.833 | 10.89 | 0.00 | 43.25 | 4.30 |
6756 | 8089 | 4.142227 | CGTCTTATATTACGGGATGGAGGG | 60.142 | 50.000 | 0.00 | 0.00 | 35.51 | 4.30 |
6757 | 8090 | 5.021458 | GTCTTATATTACGGGATGGAGGGA | 58.979 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
6758 | 8091 | 5.127356 | GTCTTATATTACGGGATGGAGGGAG | 59.873 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6946 | 8315 | 4.620086 | TGGAGTCCCAGAGGATAGTTAA | 57.380 | 45.455 | 6.74 | 0.00 | 46.41 | 2.01 |
7026 | 8401 | 1.734477 | CTTGGCGTCGTGGTGAGAG | 60.734 | 63.158 | 0.00 | 0.00 | 0.00 | 3.20 |
7027 | 8402 | 2.421877 | CTTGGCGTCGTGGTGAGAGT | 62.422 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
7028 | 8403 | 2.430921 | GGCGTCGTGGTGAGAGTG | 60.431 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
7029 | 8404 | 2.643272 | GCGTCGTGGTGAGAGTGA | 59.357 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
7030 | 8405 | 1.442857 | GCGTCGTGGTGAGAGTGAG | 60.443 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
7058 | 8433 | 3.246699 | CAGCCACACATTTGAAGCTTTTG | 59.753 | 43.478 | 0.00 | 0.00 | 33.95 | 2.44 |
7076 | 8451 | 0.615331 | TGGGCAGGTGATGAAGAGAC | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
7106 | 8481 | 1.613437 | CTTCGGTTGGGCAAGAACATT | 59.387 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
7156 | 8532 | 8.151141 | TCAAGTGGAAGTATCTACGTACATAG | 57.849 | 38.462 | 0.00 | 0.00 | 41.56 | 2.23 |
7157 | 8533 | 6.557291 | AGTGGAAGTATCTACGTACATAGC | 57.443 | 41.667 | 0.00 | 0.00 | 41.56 | 2.97 |
7158 | 8534 | 5.178996 | AGTGGAAGTATCTACGTACATAGCG | 59.821 | 44.000 | 0.00 | 0.00 | 41.56 | 4.26 |
7159 | 8535 | 5.178252 | GTGGAAGTATCTACGTACATAGCGA | 59.822 | 44.000 | 0.00 | 0.00 | 31.40 | 4.93 |
7160 | 8536 | 5.407691 | TGGAAGTATCTACGTACATAGCGAG | 59.592 | 44.000 | 0.00 | 0.00 | 0.00 | 5.03 |
7161 | 8537 | 4.925061 | AGTATCTACGTACATAGCGAGC | 57.075 | 45.455 | 0.00 | 0.00 | 0.00 | 5.03 |
7233 | 8639 | 3.209410 | CTTGTCAGCCCAGGAATGATAC | 58.791 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
7236 | 8642 | 1.688735 | TCAGCCCAGGAATGATACGAG | 59.311 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
7238 | 8644 | 2.119495 | AGCCCAGGAATGATACGAGTT | 58.881 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
7239 | 8645 | 2.158900 | AGCCCAGGAATGATACGAGTTG | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
7241 | 8647 | 3.181469 | GCCCAGGAATGATACGAGTTGTA | 60.181 | 47.826 | 0.00 | 0.00 | 37.49 | 2.41 |
7243 | 8649 | 4.099573 | CCCAGGAATGATACGAGTTGTACT | 59.900 | 45.833 | 0.00 | 0.00 | 35.44 | 2.73 |
7244 | 8650 | 5.282510 | CCAGGAATGATACGAGTTGTACTC | 58.717 | 45.833 | 0.00 | 0.00 | 41.71 | 2.59 |
7245 | 8651 | 5.067936 | CCAGGAATGATACGAGTTGTACTCT | 59.932 | 44.000 | 5.41 | 0.00 | 42.92 | 3.24 |
7246 | 8652 | 6.262496 | CCAGGAATGATACGAGTTGTACTCTA | 59.738 | 42.308 | 5.41 | 0.00 | 42.92 | 2.43 |
7247 | 8653 | 7.133513 | CAGGAATGATACGAGTTGTACTCTAC | 58.866 | 42.308 | 5.41 | 0.00 | 42.92 | 2.59 |
7248 | 8654 | 6.827251 | AGGAATGATACGAGTTGTACTCTACA | 59.173 | 38.462 | 5.41 | 1.53 | 42.92 | 2.74 |
7249 | 8655 | 7.338703 | AGGAATGATACGAGTTGTACTCTACAA | 59.661 | 37.037 | 5.41 | 0.00 | 42.92 | 2.41 |
7298 | 8821 | 3.483085 | GCTAACCGAACAGCACGTAAATC | 60.483 | 47.826 | 0.00 | 0.00 | 37.73 | 2.17 |
7450 | 10061 | 5.669477 | ACAATTTTAAGCAAAGCCAACTGA | 58.331 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
7451 | 10062 | 5.523552 | ACAATTTTAAGCAAAGCCAACTGAC | 59.476 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
7463 | 10493 | 2.912624 | AACTGACGGACGGACGGAC | 61.913 | 63.158 | 6.00 | 0.89 | 38.39 | 4.79 |
7496 | 10526 | 1.160137 | GTGCCACTAGAAAGCCACAG | 58.840 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
7500 | 10530 | 2.935676 | GCCACTAGAAAGCCACAGGTAC | 60.936 | 54.545 | 0.00 | 0.00 | 0.00 | 3.34 |
7535 | 10565 | 2.294512 | GCTCCCTCTGTTTTGTTTCCAG | 59.705 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
7558 | 10588 | 3.153919 | ACAGACTGGAAGAGACACTCTC | 58.846 | 50.000 | 7.51 | 0.00 | 40.28 | 3.20 |
7570 | 10600 | 3.822996 | AGACACTCTCGACATGTAAACG | 58.177 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
7578 | 10727 | 2.224314 | TCGACATGTAAACGCAATGCAA | 59.776 | 40.909 | 5.91 | 0.00 | 0.00 | 4.08 |
7596 | 10745 | 2.357760 | GCCGGCGTTGTTACAGGA | 60.358 | 61.111 | 12.58 | 0.00 | 0.00 | 3.86 |
7608 | 10765 | 6.256975 | GCGTTGTTACAGGATACATGACATAA | 59.743 | 38.462 | 0.00 | 0.00 | 41.41 | 1.90 |
7645 | 10802 | 4.159506 | TCCACATCGACAATGACACATCTA | 59.840 | 41.667 | 0.00 | 0.00 | 38.83 | 1.98 |
7646 | 10803 | 4.869861 | CCACATCGACAATGACACATCTAA | 59.130 | 41.667 | 0.00 | 0.00 | 38.83 | 2.10 |
7675 | 10832 | 6.586344 | ACTGACAGCATAACAGCATTACTAT | 58.414 | 36.000 | 1.25 | 0.00 | 36.85 | 2.12 |
7752 | 10909 | 4.380867 | CCAGGAATATGTCACAACTTTGGC | 60.381 | 45.833 | 0.00 | 0.00 | 0.00 | 4.52 |
7753 | 10910 | 4.218200 | CAGGAATATGTCACAACTTTGGCA | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 4.92 |
7771 | 10929 | 6.952773 | TTGGCAAGTAAACAAACTAGACAT | 57.047 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
7849 | 11007 | 8.275632 | GCATCCACATCTAAAAAGAAACAAAAC | 58.724 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
48 | 49 | 9.685828 | AACTAATAAGCTTGATAAAACGCAAAA | 57.314 | 25.926 | 9.86 | 0.00 | 0.00 | 2.44 |
158 | 159 | 4.012554 | CGGATGATCAACCGGTCG | 57.987 | 61.111 | 30.77 | 10.20 | 44.59 | 4.79 |
197 | 198 | 9.495754 | GCTTGAGAAAATATGTCTTGTGAATAC | 57.504 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
199 | 200 | 8.345724 | AGCTTGAGAAAATATGTCTTGTGAAT | 57.654 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
265 | 452 | 3.770666 | TCATCGAAGCAACTAGTAGTGC | 58.229 | 45.455 | 10.95 | 10.95 | 0.00 | 4.40 |
344 | 531 | 3.139077 | GTTGGTATCGATTGACCCATCC | 58.861 | 50.000 | 13.60 | 2.65 | 34.58 | 3.51 |
418 | 605 | 5.985911 | TCTACTGGTGATTTTAGGGCTTAC | 58.014 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
422 | 609 | 4.080526 | TCCTTCTACTGGTGATTTTAGGGC | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 5.19 |
457 | 662 | 3.869912 | GCTCAGGTTTTCAGCTGTATGGA | 60.870 | 47.826 | 14.67 | 3.15 | 46.88 | 3.41 |
460 | 665 | 3.423539 | TGCTCAGGTTTTCAGCTGTAT | 57.576 | 42.857 | 14.67 | 0.00 | 46.88 | 2.29 |
464 | 669 | 1.952296 | CACTTGCTCAGGTTTTCAGCT | 59.048 | 47.619 | 0.00 | 0.00 | 34.03 | 4.24 |
476 | 681 | 1.154150 | GAACATGGCGCACTTGCTC | 60.154 | 57.895 | 10.83 | 4.72 | 39.32 | 4.26 |
518 | 723 | 2.261671 | GACACGTGGATGGCGAGT | 59.738 | 61.111 | 21.57 | 0.00 | 36.02 | 4.18 |
520 | 725 | 4.077184 | GGGACACGTGGATGGCGA | 62.077 | 66.667 | 21.57 | 0.00 | 0.00 | 5.54 |
532 | 737 | 2.281484 | GTTTCTGCGGCAGGGACA | 60.281 | 61.111 | 28.18 | 7.59 | 31.51 | 4.02 |
553 | 758 | 1.515519 | CGTTCTCGATTTCCGCCGA | 60.516 | 57.895 | 0.00 | 0.00 | 39.71 | 5.54 |
567 | 772 | 2.860735 | CGAATCCATTCCAGTCTCGTTC | 59.139 | 50.000 | 0.00 | 0.00 | 33.28 | 3.95 |
591 | 796 | 2.609610 | CGTCCCTTTCCTCCCCCA | 60.610 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
715 | 1313 | 1.731433 | CCAAATCCATCCCGCTGCTG | 61.731 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
802 | 1433 | 0.178990 | GAGAGAGAGAGGGAGGAGCC | 60.179 | 65.000 | 0.00 | 0.00 | 0.00 | 4.70 |
803 | 1434 | 0.846693 | AGAGAGAGAGAGGGAGGAGC | 59.153 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
804 | 1435 | 1.421646 | GGAGAGAGAGAGAGGGAGGAG | 59.578 | 61.905 | 0.00 | 0.00 | 0.00 | 3.69 |
806 | 1437 | 0.108585 | CGGAGAGAGAGAGAGGGAGG | 59.891 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
807 | 1438 | 0.535102 | GCGGAGAGAGAGAGAGGGAG | 60.535 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
808 | 1439 | 0.986019 | AGCGGAGAGAGAGAGAGGGA | 60.986 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
809 | 1440 | 0.106719 | AAGCGGAGAGAGAGAGAGGG | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
810 | 1441 | 1.405105 | CAAAGCGGAGAGAGAGAGAGG | 59.595 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
853 | 1486 | 4.601794 | TGGGCTTGCAGGTGGTGG | 62.602 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
905 | 1546 | 2.360475 | AAGAGAAGGGCCGCTTGC | 60.360 | 61.111 | 10.77 | 3.96 | 40.16 | 4.01 |
906 | 1547 | 1.023513 | CAGAAGAGAAGGGCCGCTTG | 61.024 | 60.000 | 10.77 | 0.00 | 0.00 | 4.01 |
907 | 1548 | 1.298014 | CAGAAGAGAAGGGCCGCTT | 59.702 | 57.895 | 6.21 | 6.21 | 0.00 | 4.68 |
908 | 1549 | 1.484444 | AACAGAAGAGAAGGGCCGCT | 61.484 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
909 | 1550 | 0.606673 | AAACAGAAGAGAAGGGCCGC | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
910 | 1551 | 1.002544 | AGAAACAGAAGAGAAGGGCCG | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
911 | 1552 | 2.039084 | TCAGAAACAGAAGAGAAGGGCC | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
912 | 1553 | 3.007398 | TCTCAGAAACAGAAGAGAAGGGC | 59.993 | 47.826 | 0.00 | 0.00 | 34.45 | 5.19 |
913 | 1554 | 4.283212 | AGTCTCAGAAACAGAAGAGAAGGG | 59.717 | 45.833 | 0.00 | 0.00 | 38.70 | 3.95 |
914 | 1555 | 5.467035 | AGTCTCAGAAACAGAAGAGAAGG | 57.533 | 43.478 | 0.00 | 0.00 | 38.70 | 3.46 |
915 | 1556 | 5.153513 | CGAGTCTCAGAAACAGAAGAGAAG | 58.846 | 45.833 | 0.00 | 0.00 | 38.70 | 2.85 |
916 | 1557 | 4.022762 | CCGAGTCTCAGAAACAGAAGAGAA | 60.023 | 45.833 | 0.00 | 0.00 | 38.70 | 2.87 |
917 | 1558 | 3.504134 | CCGAGTCTCAGAAACAGAAGAGA | 59.496 | 47.826 | 0.00 | 0.00 | 34.95 | 3.10 |
921 | 1562 | 5.977489 | TTATCCGAGTCTCAGAAACAGAA | 57.023 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
935 | 1576 | 3.334691 | TGTGCAGTCCTTTTTATCCGAG | 58.665 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
938 | 1579 | 5.009610 | TGAACTTGTGCAGTCCTTTTTATCC | 59.990 | 40.000 | 0.00 | 0.00 | 32.94 | 2.59 |
947 | 1588 | 3.931578 | ACTATCTGAACTTGTGCAGTCC | 58.068 | 45.455 | 8.45 | 0.00 | 32.94 | 3.85 |
949 | 1590 | 4.081420 | CCCTACTATCTGAACTTGTGCAGT | 60.081 | 45.833 | 8.45 | 0.21 | 37.30 | 4.40 |
950 | 1591 | 4.081420 | ACCCTACTATCTGAACTTGTGCAG | 60.081 | 45.833 | 2.38 | 2.38 | 0.00 | 4.41 |
951 | 1592 | 3.838317 | ACCCTACTATCTGAACTTGTGCA | 59.162 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
953 | 1594 | 4.712337 | AGGACCCTACTATCTGAACTTGTG | 59.288 | 45.833 | 0.00 | 0.00 | 0.00 | 3.33 |
954 | 1595 | 4.949121 | AGGACCCTACTATCTGAACTTGT | 58.051 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
973 | 1781 | 1.596934 | GTCGGCAATGTCAGGAGGA | 59.403 | 57.895 | 0.00 | 0.00 | 0.00 | 3.71 |
975 | 1783 | 1.021390 | GTGGTCGGCAATGTCAGGAG | 61.021 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
976 | 1784 | 1.003839 | GTGGTCGGCAATGTCAGGA | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
979 | 1787 | 2.358125 | CGGTGGTCGGCAATGTCA | 60.358 | 61.111 | 0.00 | 0.00 | 34.75 | 3.58 |
980 | 1788 | 3.799755 | GCGGTGGTCGGCAATGTC | 61.800 | 66.667 | 0.00 | 0.00 | 39.26 | 3.06 |
1112 | 1928 | 0.260230 | ATTCAGAGAGAGAGGCGGGA | 59.740 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1113 | 1929 | 0.673437 | GATTCAGAGAGAGAGGCGGG | 59.327 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1231 | 2047 | 4.308458 | CCGTGTCCACCTTGCCGA | 62.308 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1241 | 2057 | 1.168714 | AGACGTACCTAACCGTGTCC | 58.831 | 55.000 | 0.00 | 0.00 | 37.44 | 4.02 |
1261 | 2077 | 2.303600 | AGGACATTGCAATTTGGCATGT | 59.696 | 40.909 | 9.83 | 4.02 | 44.48 | 3.21 |
1270 | 2086 | 5.163322 | TGGAAAAAGAACAGGACATTGCAAT | 60.163 | 36.000 | 5.99 | 5.99 | 0.00 | 3.56 |
1279 | 2095 | 1.269448 | GCGCATGGAAAAAGAACAGGA | 59.731 | 47.619 | 0.30 | 0.00 | 0.00 | 3.86 |
1299 | 2115 | 0.454600 | ACATACAGTAGTCGTGCGGG | 59.545 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1309 | 2125 | 7.321908 | TGCTTCGTTATTGGTTACATACAGTA | 58.678 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
1316 | 2132 | 3.186817 | CCGTTGCTTCGTTATTGGTTACA | 59.813 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
1317 | 2133 | 3.432933 | TCCGTTGCTTCGTTATTGGTTAC | 59.567 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
1330 | 2149 | 0.028902 | GCGTTGAACTTCCGTTGCTT | 59.971 | 50.000 | 0.00 | 0.00 | 32.39 | 3.91 |
1341 | 2160 | 2.686558 | TTGAATGCTGAGCGTTGAAC | 57.313 | 45.000 | 17.74 | 3.06 | 37.94 | 3.18 |
1347 | 2166 | 2.975410 | TTCTGTTTGAATGCTGAGCG | 57.025 | 45.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1355 | 2174 | 4.129380 | GCTTTTGCCCTTTCTGTTTGAAT | 58.871 | 39.130 | 0.00 | 0.00 | 40.15 | 2.57 |
1369 | 2188 | 1.465777 | GGACATTGCAATGCTTTTGCC | 59.534 | 47.619 | 33.94 | 22.03 | 46.87 | 4.52 |
1426 | 2245 | 2.090943 | ACCCATCCTACCGATACAGGAA | 60.091 | 50.000 | 0.00 | 0.00 | 44.03 | 3.36 |
1427 | 2246 | 1.502039 | ACCCATCCTACCGATACAGGA | 59.498 | 52.381 | 0.00 | 0.00 | 44.90 | 3.86 |
1428 | 2247 | 1.618837 | CACCCATCCTACCGATACAGG | 59.381 | 57.143 | 0.00 | 0.00 | 37.30 | 4.00 |
1429 | 2248 | 2.317040 | ACACCCATCCTACCGATACAG | 58.683 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
1442 | 2281 | 7.001674 | TGAAATTACTACTGTCAAACACCCAT | 58.998 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
1464 | 2303 | 3.388024 | AGGACTGTGCTAGTGAAGTTGAA | 59.612 | 43.478 | 0.00 | 0.00 | 40.53 | 2.69 |
1472 | 2311 | 4.238514 | GTGAAAGTAGGACTGTGCTAGTG | 58.761 | 47.826 | 16.07 | 0.00 | 40.53 | 2.74 |
1478 | 2317 | 5.050091 | GTGACATTGTGAAAGTAGGACTGTG | 60.050 | 44.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1482 | 2321 | 4.385825 | TGGTGACATTGTGAAAGTAGGAC | 58.614 | 43.478 | 0.00 | 0.00 | 33.40 | 3.85 |
1486 | 2325 | 3.750371 | CCCTGGTGACATTGTGAAAGTA | 58.250 | 45.455 | 0.00 | 0.00 | 41.51 | 2.24 |
1539 | 2378 | 2.028733 | GCATTTGGCTGCCGGTTTG | 61.029 | 57.895 | 14.98 | 9.95 | 40.25 | 2.93 |
1544 | 2383 | 0.108520 | AAATCTGCATTTGGCTGCCG | 60.109 | 50.000 | 14.98 | 0.00 | 45.15 | 5.69 |
1549 | 2388 | 3.581024 | TGAGTGAAATCTGCATTTGGC | 57.419 | 42.857 | 0.00 | 0.00 | 45.13 | 4.52 |
1552 | 2391 | 6.395426 | TGAACTTGAGTGAAATCTGCATTT | 57.605 | 33.333 | 0.00 | 0.00 | 34.70 | 2.32 |
1599 | 2438 | 6.185114 | AGCTGCACCTAGAGAAAATCATAT | 57.815 | 37.500 | 1.02 | 0.00 | 0.00 | 1.78 |
1600 | 2439 | 5.453903 | GGAGCTGCACCTAGAGAAAATCATA | 60.454 | 44.000 | 8.98 | 0.00 | 0.00 | 2.15 |
1611 | 2450 | 1.002430 | TGTTCTTGGAGCTGCACCTAG | 59.998 | 52.381 | 18.28 | 18.28 | 0.00 | 3.02 |
1644 | 2483 | 2.033448 | GTTGGCCATCACCCGACA | 59.967 | 61.111 | 6.09 | 0.00 | 36.85 | 4.35 |
1648 | 2487 | 0.962356 | CTCACTGTTGGCCATCACCC | 60.962 | 60.000 | 12.62 | 0.00 | 0.00 | 4.61 |
1658 | 2497 | 7.315890 | TCTTCACATACTCATACTCACTGTTG | 58.684 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
1664 | 2503 | 5.766590 | TCCCTCTTCACATACTCATACTCA | 58.233 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1688 | 2527 | 2.388232 | GCGGCGGTCGAACTCAAAT | 61.388 | 57.895 | 6.02 | 0.00 | 42.43 | 2.32 |
1742 | 2581 | 2.179018 | CGGTGAAAATGGCAGCCG | 59.821 | 61.111 | 7.03 | 0.00 | 0.00 | 5.52 |
1754 | 2593 | 4.583489 | GGAAGAGATGAACTATACCGGTGA | 59.417 | 45.833 | 19.93 | 3.75 | 0.00 | 4.02 |
1765 | 2604 | 1.290134 | ACCCTGGGGAAGAGATGAAC | 58.710 | 55.000 | 18.88 | 0.00 | 38.96 | 3.18 |
1826 | 2671 | 2.558359 | AGCAATCACTTAACAGGGTTGC | 59.442 | 45.455 | 0.00 | 0.00 | 39.15 | 4.17 |
1839 | 2685 | 7.172190 | TCAGCTATAATAGAAAGCAGCAATCAC | 59.828 | 37.037 | 0.00 | 0.00 | 38.75 | 3.06 |
1857 | 2703 | 9.069082 | GTCAAGGTTTAGAGACTATCAGCTATA | 57.931 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
1863 | 2709 | 6.017192 | ACCAGTCAAGGTTTAGAGACTATCA | 58.983 | 40.000 | 0.00 | 0.00 | 39.34 | 2.15 |
1898 | 2744 | 3.929610 | CAGCTAGGAAGTGAGCAAAGTAC | 59.070 | 47.826 | 0.00 | 0.00 | 41.36 | 2.73 |
1945 | 2791 | 0.806868 | ATGGTCGATGCAGTTGCTTG | 59.193 | 50.000 | 5.62 | 0.00 | 42.66 | 4.01 |
2059 | 2905 | 8.584157 | GTGATCCCCATATTTGCATAATGTAAA | 58.416 | 33.333 | 0.00 | 0.00 | 36.45 | 2.01 |
2201 | 3047 | 9.524106 | CAAGCATTCATCAATCTTAAAGCATTA | 57.476 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
2413 | 3266 | 8.801913 | CAAAGAATGAACAGAAGTCTTTCAAAC | 58.198 | 33.333 | 8.81 | 7.10 | 36.62 | 2.93 |
2452 | 3305 | 6.699575 | AAGCAAACAGAAAGATAACACACT | 57.300 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2619 | 3480 | 6.926272 | GCAGGTATTGGTAGAGAGTCAATAAG | 59.074 | 42.308 | 0.00 | 0.00 | 35.82 | 1.73 |
2641 | 3503 | 6.089016 | CACATAAAGACAGAATTTTGCTGCAG | 59.911 | 38.462 | 10.11 | 10.11 | 36.86 | 4.41 |
2740 | 3602 | 5.449862 | GCATACAACTCGCCCATCAAAATAA | 60.450 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2880 | 3851 | 7.652300 | TGTAGAGAACATCAACACACATAAC | 57.348 | 36.000 | 0.00 | 0.00 | 31.43 | 1.89 |
2970 | 3949 | 4.821260 | TGTTGCTGAAGCTTCATAGTTTCA | 59.179 | 37.500 | 28.57 | 18.59 | 45.62 | 2.69 |
3139 | 4215 | 0.319813 | GCTTGCATGTGGTGGGAAAC | 60.320 | 55.000 | 1.14 | 0.00 | 0.00 | 2.78 |
3140 | 4216 | 1.470996 | GGCTTGCATGTGGTGGGAAA | 61.471 | 55.000 | 1.14 | 0.00 | 0.00 | 3.13 |
3165 | 4248 | 1.214589 | GAGGGCTTGCATGTGCTTG | 59.785 | 57.895 | 6.55 | 0.57 | 42.66 | 4.01 |
3292 | 4387 | 6.047870 | GCACCACATTTTTGCCATATGAATA | 58.952 | 36.000 | 3.65 | 0.00 | 0.00 | 1.75 |
3346 | 4441 | 3.035942 | CGTTGCTGCGGAAATTTATAGC | 58.964 | 45.455 | 0.00 | 0.00 | 0.00 | 2.97 |
3529 | 4625 | 7.842887 | AGACACCTCTAACCCTAGATAATTC | 57.157 | 40.000 | 0.00 | 0.00 | 33.59 | 2.17 |
3571 | 4696 | 7.951530 | AAATAGACGGTTAAAGAGACGAAAA | 57.048 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3572 | 4697 | 7.869429 | AGAAAATAGACGGTTAAAGAGACGAAA | 59.131 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
3573 | 4698 | 7.373493 | AGAAAATAGACGGTTAAAGAGACGAA | 58.627 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
3606 | 4741 | 8.329203 | ACTCATTCTTGTCCTTAGAAAATGTC | 57.671 | 34.615 | 0.00 | 0.00 | 35.43 | 3.06 |
3760 | 4895 | 9.591792 | CTGTGATGTAAATCTTCACTGAGAATA | 57.408 | 33.333 | 12.53 | 0.00 | 45.50 | 1.75 |
3898 | 5048 | 7.417612 | ACAAACTAAAGTACAGCAAGAATGTG | 58.582 | 34.615 | 0.00 | 0.00 | 32.02 | 3.21 |
3985 | 5135 | 3.253921 | CACTTGATTGCTCATCACAACCA | 59.746 | 43.478 | 0.00 | 0.00 | 41.98 | 3.67 |
3990 | 5140 | 2.227149 | TGCACACTTGATTGCTCATCAC | 59.773 | 45.455 | 0.00 | 0.00 | 41.98 | 3.06 |
3997 | 5147 | 1.242076 | AGGTCTGCACACTTGATTGC | 58.758 | 50.000 | 0.00 | 0.00 | 39.33 | 3.56 |
4155 | 5351 | 8.310382 | CCAAAACTCAGGTCCTATGATATCTAG | 58.690 | 40.741 | 3.98 | 3.69 | 0.00 | 2.43 |
4267 | 5463 | 3.728385 | AGCTTCCAGTCCAGCTAAAAT | 57.272 | 42.857 | 0.00 | 0.00 | 44.86 | 1.82 |
4325 | 5524 | 2.346803 | CCCGACACACAATTAGACTGG | 58.653 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
4475 | 5681 | 7.081349 | GCCGCATGTATTTAGCAATGTATTTA | 58.919 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
4476 | 5682 | 5.920273 | GCCGCATGTATTTAGCAATGTATTT | 59.080 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4477 | 5683 | 5.009510 | TGCCGCATGTATTTAGCAATGTATT | 59.990 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
4478 | 5684 | 4.518590 | TGCCGCATGTATTTAGCAATGTAT | 59.481 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
4479 | 5685 | 3.879892 | TGCCGCATGTATTTAGCAATGTA | 59.120 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
4480 | 5686 | 2.687425 | TGCCGCATGTATTTAGCAATGT | 59.313 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
4481 | 5687 | 3.352554 | TGCCGCATGTATTTAGCAATG | 57.647 | 42.857 | 0.00 | 0.00 | 0.00 | 2.82 |
4482 | 5688 | 4.589216 | ATTGCCGCATGTATTTAGCAAT | 57.411 | 36.364 | 0.00 | 2.37 | 43.92 | 3.56 |
4483 | 5689 | 4.336713 | TGTATTGCCGCATGTATTTAGCAA | 59.663 | 37.500 | 0.00 | 0.00 | 43.59 | 3.91 |
4484 | 5690 | 3.879892 | TGTATTGCCGCATGTATTTAGCA | 59.120 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
4485 | 5691 | 4.481930 | TGTATTGCCGCATGTATTTAGC | 57.518 | 40.909 | 0.00 | 0.00 | 0.00 | 3.09 |
4486 | 5692 | 8.503196 | TCTAAATGTATTGCCGCATGTATTTAG | 58.497 | 33.333 | 20.35 | 20.35 | 37.82 | 1.85 |
4674 | 5885 | 5.647589 | TCATACCTGTACTCGTTGCTAAAG | 58.352 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
4718 | 5929 | 4.885907 | CCATAGTTCTCTCCATGCAACAAT | 59.114 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
4721 | 5932 | 4.142609 | TCCATAGTTCTCTCCATGCAAC | 57.857 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
5158 | 6402 | 7.267857 | GGGGAAATATTCTTTCCACTTCATTG | 58.732 | 38.462 | 16.28 | 0.00 | 45.99 | 2.82 |
5159 | 6403 | 7.423844 | GGGGAAATATTCTTTCCACTTCATT | 57.576 | 36.000 | 16.28 | 0.00 | 45.99 | 2.57 |
5337 | 6586 | 6.697455 | TCATGCTGAACTATTATCGACAAGTC | 59.303 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
5376 | 6634 | 4.183865 | TCATACTGCTGCAGACAACATAC | 58.816 | 43.478 | 34.28 | 0.00 | 35.18 | 2.39 |
5477 | 6756 | 3.009723 | CTGCAACAGGGTATCGTTGAAT | 58.990 | 45.455 | 6.46 | 0.00 | 44.20 | 2.57 |
5501 | 6781 | 7.658982 | TCGTTCTAACTACTAGAAGAGTCAACA | 59.341 | 37.037 | 0.00 | 0.00 | 45.39 | 3.33 |
5551 | 6845 | 5.425577 | TGCAAATTAGCGTGTAGAACAAA | 57.574 | 34.783 | 0.00 | 0.00 | 37.31 | 2.83 |
5682 | 6990 | 9.827411 | AGAATTAATTACGAGAACTGAAAAAGC | 57.173 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
5976 | 7295 | 8.494016 | ACCGAAAAATTACTCTGATCCTTTAG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
6090 | 7410 | 2.557555 | ATCCACCCATCTCTCAGACA | 57.442 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6103 | 7423 | 6.828785 | AGTATCAGTTGGAAAATGTATCCACC | 59.171 | 38.462 | 0.00 | 0.00 | 46.37 | 4.61 |
6184 | 7504 | 2.304470 | TGTAGCCTGTTGGACAGCATTA | 59.696 | 45.455 | 2.59 | 0.00 | 44.63 | 1.90 |
6218 | 7538 | 5.918576 | GGTGATTTCTCCGTTTCGAATTTTT | 59.081 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
6219 | 7539 | 5.458015 | GGTGATTTCTCCGTTTCGAATTTT | 58.542 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
6220 | 7540 | 4.082949 | GGGTGATTTCTCCGTTTCGAATTT | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
6221 | 7541 | 3.439129 | GGGTGATTTCTCCGTTTCGAATT | 59.561 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
6222 | 7542 | 3.007635 | GGGTGATTTCTCCGTTTCGAAT | 58.992 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
6223 | 7543 | 2.224329 | TGGGTGATTTCTCCGTTTCGAA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
6224 | 7544 | 1.345089 | TGGGTGATTTCTCCGTTTCGA | 59.655 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
6225 | 7545 | 1.803334 | TGGGTGATTTCTCCGTTTCG | 58.197 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
6226 | 7546 | 4.783764 | ATTTGGGTGATTTCTCCGTTTC | 57.216 | 40.909 | 0.00 | 0.00 | 0.00 | 2.78 |
6227 | 7547 | 5.545063 | AAATTTGGGTGATTTCTCCGTTT | 57.455 | 34.783 | 0.00 | 0.00 | 0.00 | 3.60 |
6228 | 7548 | 6.850752 | ATAAATTTGGGTGATTTCTCCGTT | 57.149 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
6229 | 7549 | 7.948034 | TTATAAATTTGGGTGATTTCTCCGT | 57.052 | 32.000 | 0.00 | 0.00 | 0.00 | 4.69 |
6230 | 7550 | 7.704899 | GGTTTATAAATTTGGGTGATTTCTCCG | 59.295 | 37.037 | 0.00 | 0.00 | 0.00 | 4.63 |
6231 | 7551 | 8.536175 | TGGTTTATAAATTTGGGTGATTTCTCC | 58.464 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
6233 | 7553 | 9.889128 | CATGGTTTATAAATTTGGGTGATTTCT | 57.111 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
6234 | 7554 | 8.611757 | GCATGGTTTATAAATTTGGGTGATTTC | 58.388 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
6273 | 7594 | 4.832248 | CAGCACTTCCACCTAATCACTTA | 58.168 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
6362 | 7684 | 4.482386 | CAAAGAAACTCGGACGTGATCTA | 58.518 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
6415 | 7741 | 2.950877 | CGACATCTCCGCTCACTTC | 58.049 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
6429 | 7755 | 2.710902 | CCACCCATCTCTCGCGACA | 61.711 | 63.158 | 3.71 | 0.00 | 0.00 | 4.35 |
6434 | 7760 | 0.105593 | CACATCCCACCCATCTCTCG | 59.894 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
6465 | 7791 | 1.074775 | GTCAGGCCCCATGTCAACA | 59.925 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
6545 | 7873 | 3.135530 | AGAGGATGATGGGAGCTACAAAC | 59.864 | 47.826 | 0.00 | 0.00 | 0.00 | 2.93 |
6556 | 7884 | 5.198965 | AGACAAAATTCCAGAGGATGATGG | 58.801 | 41.667 | 0.00 | 0.00 | 37.97 | 3.51 |
6576 | 7904 | 8.589335 | TCTACAAAACAGTGATGTTTCTAGAC | 57.411 | 34.615 | 6.81 | 0.00 | 40.67 | 2.59 |
6591 | 7919 | 7.397892 | TCCTCAAAACACAATCTACAAAACA | 57.602 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
6636 | 7964 | 7.345392 | ACTTATAAAACCGGTAGATAAGGTGGA | 59.655 | 37.037 | 28.83 | 8.12 | 38.44 | 4.02 |
6666 | 7999 | 3.363627 | AGGTGTTCAGGGTAGCTAGTAC | 58.636 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
6668 | 8001 | 2.625282 | AGGTGTTCAGGGTAGCTAGT | 57.375 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6669 | 8002 | 3.362706 | TGTAGGTGTTCAGGGTAGCTAG | 58.637 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
6670 | 8003 | 3.461378 | TGTAGGTGTTCAGGGTAGCTA | 57.539 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
6671 | 8004 | 2.320681 | TGTAGGTGTTCAGGGTAGCT | 57.679 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
6672 | 8005 | 4.161754 | AGTTATGTAGGTGTTCAGGGTAGC | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
6673 | 8006 | 5.934402 | AGTTATGTAGGTGTTCAGGGTAG | 57.066 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
6695 | 8028 | 2.090943 | ACATTATGGGACGGAGGGAGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
6696 | 8029 | 1.344087 | ACATTATGGGACGGAGGGAGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
6697 | 8030 | 1.424638 | ACATTATGGGACGGAGGGAG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6698 | 8031 | 2.701951 | GTTACATTATGGGACGGAGGGA | 59.298 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
6699 | 8032 | 2.704065 | AGTTACATTATGGGACGGAGGG | 59.296 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6700 | 8033 | 4.587684 | ACTAGTTACATTATGGGACGGAGG | 59.412 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
6701 | 8034 | 5.068723 | ACACTAGTTACATTATGGGACGGAG | 59.931 | 44.000 | 0.00 | 1.55 | 0.00 | 4.63 |
6702 | 8035 | 4.957954 | ACACTAGTTACATTATGGGACGGA | 59.042 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
6703 | 8036 | 5.163488 | TGACACTAGTTACATTATGGGACGG | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
6704 | 8037 | 5.898174 | TGACACTAGTTACATTATGGGACG | 58.102 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
6705 | 8038 | 8.556213 | TTTTGACACTAGTTACATTATGGGAC | 57.444 | 34.615 | 0.00 | 0.00 | 0.00 | 4.46 |
6728 | 8061 | 7.274447 | TCCATCCCGTAATATAAGACGTTTTT | 58.726 | 34.615 | 0.00 | 0.00 | 37.36 | 1.94 |
6729 | 8062 | 6.819284 | TCCATCCCGTAATATAAGACGTTTT | 58.181 | 36.000 | 0.00 | 0.00 | 37.36 | 2.43 |
6730 | 8063 | 6.409524 | TCCATCCCGTAATATAAGACGTTT | 57.590 | 37.500 | 8.46 | 0.00 | 37.36 | 3.60 |
6731 | 8064 | 5.047519 | CCTCCATCCCGTAATATAAGACGTT | 60.048 | 44.000 | 8.46 | 0.00 | 37.36 | 3.99 |
6732 | 8065 | 4.461781 | CCTCCATCCCGTAATATAAGACGT | 59.538 | 45.833 | 8.46 | 0.00 | 37.36 | 4.34 |
6733 | 8066 | 4.142227 | CCCTCCATCCCGTAATATAAGACG | 60.142 | 50.000 | 3.44 | 3.44 | 38.79 | 4.18 |
6734 | 8067 | 5.021458 | TCCCTCCATCCCGTAATATAAGAC | 58.979 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
6735 | 8068 | 5.222484 | ACTCCCTCCATCCCGTAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
6736 | 8069 | 5.024118 | ACTCCCTCCATCCCGTAATATAAG | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
6737 | 8070 | 5.019657 | ACTCCCTCCATCCCGTAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
6738 | 8071 | 4.687262 | ACTCCCTCCATCCCGTAATATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
6739 | 8072 | 3.562108 | ACTCCCTCCATCCCGTAATAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
6740 | 8073 | 4.140853 | AGTTACTCCCTCCATCCCGTAATA | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
6741 | 8074 | 2.970640 | GTTACTCCCTCCATCCCGTAAT | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
6742 | 8075 | 2.023695 | AGTTACTCCCTCCATCCCGTAA | 60.024 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
6743 | 8076 | 1.572415 | AGTTACTCCCTCCATCCCGTA | 59.428 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
6744 | 8077 | 0.338814 | AGTTACTCCCTCCATCCCGT | 59.661 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
6745 | 8078 | 0.753262 | CAGTTACTCCCTCCATCCCG | 59.247 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
6746 | 8079 | 1.880941 | ACAGTTACTCCCTCCATCCC | 58.119 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
6747 | 8080 | 4.302559 | AAAACAGTTACTCCCTCCATCC | 57.697 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
6748 | 8081 | 7.793036 | AGTATAAAACAGTTACTCCCTCCATC | 58.207 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
6749 | 8082 | 7.750947 | AGTATAAAACAGTTACTCCCTCCAT | 57.249 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
6750 | 8083 | 7.563724 | AAGTATAAAACAGTTACTCCCTCCA | 57.436 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6751 | 8084 | 8.756927 | AGTAAGTATAAAACAGTTACTCCCTCC | 58.243 | 37.037 | 0.00 | 0.00 | 37.51 | 4.30 |
6752 | 8085 | 9.800433 | GAGTAAGTATAAAACAGTTACTCCCTC | 57.200 | 37.037 | 14.82 | 2.54 | 45.22 | 4.30 |
6880 | 8246 | 1.227380 | GACCATGACAGCCGGCTAG | 60.227 | 63.158 | 32.30 | 24.89 | 0.00 | 3.42 |
6946 | 8315 | 1.271102 | GCGTCTGACCAGAAGTTCTCT | 59.729 | 52.381 | 1.26 | 0.00 | 39.48 | 3.10 |
7004 | 8373 | 1.079819 | CACCACGACGCCAAGAGAT | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 2.75 |
7026 | 8401 | 2.031616 | TGTGGCTGCAGCTCTCAC | 59.968 | 61.111 | 35.82 | 31.88 | 41.70 | 3.51 |
7027 | 8402 | 2.031616 | GTGTGGCTGCAGCTCTCA | 59.968 | 61.111 | 35.82 | 27.04 | 41.70 | 3.27 |
7028 | 8403 | 0.959372 | AATGTGTGGCTGCAGCTCTC | 60.959 | 55.000 | 35.82 | 26.67 | 41.70 | 3.20 |
7029 | 8404 | 0.538977 | AAATGTGTGGCTGCAGCTCT | 60.539 | 50.000 | 35.82 | 13.06 | 41.70 | 4.09 |
7030 | 8405 | 0.388134 | CAAATGTGTGGCTGCAGCTC | 60.388 | 55.000 | 35.82 | 27.52 | 41.70 | 4.09 |
7058 | 8433 | 0.460987 | CGTCTCTTCATCACCTGCCC | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
7090 | 8465 | 1.270252 | CCACAATGTTCTTGCCCAACC | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
7106 | 8481 | 2.368548 | AGCACTGATGTAACTGTCCACA | 59.631 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
7156 | 8532 | 1.226128 | GATCAAACAAGCCGCTCGC | 60.226 | 57.895 | 0.00 | 0.00 | 37.98 | 5.03 |
7157 | 8533 | 1.059369 | CGATCAAACAAGCCGCTCG | 59.941 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
7158 | 8534 | 1.226128 | GCGATCAAACAAGCCGCTC | 60.226 | 57.895 | 0.00 | 0.00 | 42.24 | 5.03 |
7159 | 8535 | 2.870372 | GCGATCAAACAAGCCGCT | 59.130 | 55.556 | 0.00 | 0.00 | 42.24 | 5.52 |
7160 | 8536 | 2.507322 | TTCGCGATCAAACAAGCCGC | 62.507 | 55.000 | 10.88 | 0.00 | 42.11 | 6.53 |
7161 | 8537 | 0.110419 | TTTCGCGATCAAACAAGCCG | 60.110 | 50.000 | 10.88 | 0.00 | 0.00 | 5.52 |
7238 | 8644 | 1.133598 | CGATGGCCGTTGTAGAGTACA | 59.866 | 52.381 | 0.00 | 0.00 | 36.79 | 2.90 |
7239 | 8645 | 1.535437 | CCGATGGCCGTTGTAGAGTAC | 60.535 | 57.143 | 11.45 | 0.00 | 36.31 | 2.73 |
7241 | 8647 | 1.255667 | ACCGATGGCCGTTGTAGAGT | 61.256 | 55.000 | 11.45 | 0.00 | 36.31 | 3.24 |
7243 | 8649 | 0.742505 | CTACCGATGGCCGTTGTAGA | 59.257 | 55.000 | 22.22 | 4.37 | 36.06 | 2.59 |
7244 | 8650 | 0.249322 | CCTACCGATGGCCGTTGTAG | 60.249 | 60.000 | 20.75 | 20.75 | 34.75 | 2.74 |
7245 | 8651 | 0.971959 | ACCTACCGATGGCCGTTGTA | 60.972 | 55.000 | 11.45 | 9.35 | 36.31 | 2.41 |
7246 | 8652 | 1.833787 | AACCTACCGATGGCCGTTGT | 61.834 | 55.000 | 11.45 | 8.68 | 36.31 | 3.32 |
7247 | 8653 | 1.078708 | AACCTACCGATGGCCGTTG | 60.079 | 57.895 | 5.05 | 5.05 | 36.31 | 4.10 |
7248 | 8654 | 1.078708 | CAACCTACCGATGGCCGTT | 60.079 | 57.895 | 0.00 | 0.00 | 36.31 | 4.44 |
7249 | 8655 | 2.582436 | CAACCTACCGATGGCCGT | 59.418 | 61.111 | 0.00 | 0.00 | 36.31 | 5.68 |
7298 | 8821 | 3.411351 | CGGTGAACGCCAAGGACG | 61.411 | 66.667 | 5.27 | 0.00 | 34.82 | 4.79 |
7463 | 10493 | 0.104120 | TGGCACTGATTATCCGTCCG | 59.896 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
7467 | 10497 | 4.322080 | TTCTAGTGGCACTGATTATCCG | 57.678 | 45.455 | 29.65 | 7.81 | 0.00 | 4.18 |
7496 | 10526 | 2.101082 | GAGCTACTGTTAGGCTGGTACC | 59.899 | 54.545 | 4.43 | 4.43 | 36.37 | 3.34 |
7500 | 10530 | 0.466124 | GGGAGCTACTGTTAGGCTGG | 59.534 | 60.000 | 0.00 | 0.00 | 36.37 | 4.85 |
7535 | 10565 | 2.230266 | GAGTGTCTCTTCCAGTCTGTCC | 59.770 | 54.545 | 0.00 | 0.00 | 31.05 | 4.02 |
7546 | 10576 | 5.462405 | GTTTACATGTCGAGAGTGTCTCTT | 58.538 | 41.667 | 0.00 | 0.00 | 41.35 | 2.85 |
7558 | 10588 | 2.239751 | TGCATTGCGTTTACATGTCG | 57.760 | 45.000 | 0.00 | 0.38 | 0.00 | 4.35 |
7570 | 10600 | 4.722855 | AACGCCGGCTTGCATTGC | 62.723 | 61.111 | 26.68 | 0.46 | 0.00 | 3.56 |
7578 | 10727 | 2.180159 | ATCCTGTAACAACGCCGGCT | 62.180 | 55.000 | 26.68 | 7.77 | 0.00 | 5.52 |
7608 | 10765 | 6.127338 | TGTCGATGTGGAATCTATTTCTCAGT | 60.127 | 38.462 | 0.00 | 0.00 | 34.56 | 3.41 |
7655 | 10812 | 5.684704 | ACCATAGTAATGCTGTTATGCTGT | 58.315 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
7705 | 10862 | 6.226052 | GCACTTGATCACATACTCCATGATA | 58.774 | 40.000 | 0.00 | 0.00 | 38.10 | 2.15 |
7752 | 10909 | 7.417612 | ACAGCAATGTCTAGTTTGTTTACTTG | 58.582 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
7753 | 10910 | 7.568199 | ACAGCAATGTCTAGTTTGTTTACTT | 57.432 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.