Multiple sequence alignment - TraesCS3B01G194100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G194100 chr3B 100.000 3689 0 0 1 3689 214543742 214547430 0.000000e+00 6813.0
1 TraesCS3B01G194100 chr3D 92.877 2190 77 25 622 2744 147837407 147835230 0.000000e+00 3107.0
2 TraesCS3B01G194100 chr3D 89.883 682 32 17 3024 3689 147835164 147834504 0.000000e+00 843.0
3 TraesCS3B01G194100 chr3A 90.182 1976 94 53 833 2744 165320290 165322229 0.000000e+00 2483.0
4 TraesCS3B01G194100 chr3A 96.629 623 20 1 1 622 735598915 735599537 0.000000e+00 1033.0
5 TraesCS3B01G194100 chr3A 90.286 350 11 4 3341 3689 165327896 165328223 1.570000e-118 436.0
6 TraesCS3B01G194100 chr3A 89.170 277 7 9 3024 3295 165322295 165322553 1.280000e-84 324.0
7 TraesCS3B01G194100 chr3A 94.872 78 3 1 619 695 165319726 165319803 1.800000e-23 121.0
8 TraesCS3B01G194100 chr5B 96.262 642 19 5 1 640 699778981 699778343 0.000000e+00 1048.0
9 TraesCS3B01G194100 chr4B 96.945 622 19 0 3 624 629957318 629957939 0.000000e+00 1044.0
10 TraesCS3B01G194100 chr6B 96.320 625 22 1 1 625 21063431 21064054 0.000000e+00 1026.0
11 TraesCS3B01G194100 chr6B 96.452 620 20 2 1 619 195275138 195274520 0.000000e+00 1022.0
12 TraesCS3B01G194100 chr1B 96.457 621 21 1 1 620 269218877 269218257 0.000000e+00 1024.0
13 TraesCS3B01G194100 chr7B 96.278 618 23 0 1 618 161199483 161200100 0.000000e+00 1014.0
14 TraesCS3B01G194100 chr7B 95.961 619 24 1 1 618 692876248 692876866 0.000000e+00 1003.0
15 TraesCS3B01G194100 chr2B 96.129 620 24 0 1 620 156588835 156589454 0.000000e+00 1013.0
16 TraesCS3B01G194100 chr1A 91.418 536 18 9 3159 3688 34288347 34287834 0.000000e+00 710.0
17 TraesCS3B01G194100 chr1A 91.667 60 5 0 2863 2922 405350911 405350852 2.360000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G194100 chr3B 214543742 214547430 3688 False 6813 6813 100.000 1 3689 1 chr3B.!!$F1 3688
1 TraesCS3B01G194100 chr3D 147834504 147837407 2903 True 1975 3107 91.380 622 3689 2 chr3D.!!$R1 3067
2 TraesCS3B01G194100 chr3A 735598915 735599537 622 False 1033 1033 96.629 1 622 1 chr3A.!!$F2 621
3 TraesCS3B01G194100 chr3A 165319726 165322553 2827 False 976 2483 91.408 619 3295 3 chr3A.!!$F3 2676
4 TraesCS3B01G194100 chr5B 699778343 699778981 638 True 1048 1048 96.262 1 640 1 chr5B.!!$R1 639
5 TraesCS3B01G194100 chr4B 629957318 629957939 621 False 1044 1044 96.945 3 624 1 chr4B.!!$F1 621
6 TraesCS3B01G194100 chr6B 21063431 21064054 623 False 1026 1026 96.320 1 625 1 chr6B.!!$F1 624
7 TraesCS3B01G194100 chr6B 195274520 195275138 618 True 1022 1022 96.452 1 619 1 chr6B.!!$R1 618
8 TraesCS3B01G194100 chr1B 269218257 269218877 620 True 1024 1024 96.457 1 620 1 chr1B.!!$R1 619
9 TraesCS3B01G194100 chr7B 161199483 161200100 617 False 1014 1014 96.278 1 618 1 chr7B.!!$F1 617
10 TraesCS3B01G194100 chr7B 692876248 692876866 618 False 1003 1003 95.961 1 618 1 chr7B.!!$F2 617
11 TraesCS3B01G194100 chr2B 156588835 156589454 619 False 1013 1013 96.129 1 620 1 chr2B.!!$F1 619
12 TraesCS3B01G194100 chr1A 34287834 34288347 513 True 710 710 91.418 3159 3688 1 chr1A.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 461 1.071471 CAAGTTGTGCCCGACTCCT 59.929 57.895 0.00 0.0 34.00 3.69 F
1125 1504 1.051008 TGAGCTCCTTCTTGTCAGCA 58.949 50.000 12.15 0.0 34.08 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 2483 0.032952 CCTCCTGGTCGAACACGAAA 59.967 55.0 0.0 0.0 37.78 3.46 R
2993 3444 0.030705 TCTGGCTCTGGGGAAGCTAT 60.031 55.0 0.0 0.0 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.282745 GAGTTCGTGCCTCTCGCCA 62.283 63.158 0.00 0.00 36.24 5.69
87 88 2.284625 AGGCGTGGTGGATCCTGA 60.285 61.111 14.23 0.00 37.07 3.86
266 268 1.227556 GCGTGTGGAGGTGTGTCTT 60.228 57.895 0.00 0.00 0.00 3.01
374 376 3.062042 ACGTTATTTTTCTTCGGCGACT 58.938 40.909 10.16 0.00 0.00 4.18
413 415 1.371558 GTCCTATGGGGCCTTAGCG 59.628 63.158 0.84 0.61 41.24 4.26
459 461 1.071471 CAAGTTGTGCCCGACTCCT 59.929 57.895 0.00 0.00 34.00 3.69
709 726 6.762187 ACAGAGAGAGCAATCACAATTATGAG 59.238 38.462 0.00 0.00 30.46 2.90
712 729 6.647229 AGAGAGCAATCACAATTATGAGTCA 58.353 36.000 0.00 0.00 30.46 3.41
870 1236 4.636435 AACCCCAAGCCCGACACG 62.636 66.667 0.00 0.00 0.00 4.49
912 1281 4.626081 CATCCGTCCATCCCCCGC 62.626 72.222 0.00 0.00 0.00 6.13
917 1286 3.090532 GTCCATCCCCCGCCTCTT 61.091 66.667 0.00 0.00 0.00 2.85
918 1287 2.768344 TCCATCCCCCGCCTCTTC 60.768 66.667 0.00 0.00 0.00 2.87
919 1288 3.878667 CCATCCCCCGCCTCTTCC 61.879 72.222 0.00 0.00 0.00 3.46
1125 1504 1.051008 TGAGCTCCTTCTTGTCAGCA 58.949 50.000 12.15 0.00 34.08 4.41
1365 1765 4.779733 TCCGGGTCCAGGAGGCTC 62.780 72.222 6.66 5.78 33.19 4.70
1718 2118 2.409651 GAGGCACTACCGCTCGAG 59.590 66.667 8.45 8.45 46.52 4.04
1777 2186 3.431905 GCATCTCCTCATCGCCATATCAT 60.432 47.826 0.00 0.00 0.00 2.45
1826 2240 2.799412 CGAAATGCTCTGAGCTATGGAC 59.201 50.000 28.04 14.20 42.97 4.02
1862 2276 1.370051 CGACGAACTGACGTGCTGA 60.370 57.895 0.00 0.00 46.52 4.26
1995 2409 3.685214 CTCGTCCGGGACAAGAGCG 62.685 68.421 25.80 11.65 32.09 5.03
2069 2483 2.160853 GGGGTTCAAGGACCTGGGT 61.161 63.158 0.00 0.00 39.71 4.51
2093 2507 1.251527 TGTTCGACCAGGAGGAGCTC 61.252 60.000 4.71 4.71 38.69 4.09
2096 2510 1.379176 CGACCAGGAGGAGCTCAGA 60.379 63.158 17.19 0.00 38.69 3.27
2102 2516 1.064463 CAGGAGGAGCTCAGAGAGAGT 60.064 57.143 17.19 0.00 46.47 3.24
2209 2623 2.138601 GCGACAACGACGACTCGAG 61.139 63.158 11.84 11.84 43.06 4.04
2516 2954 0.179145 CCTACGCTTCTACACACCGG 60.179 60.000 0.00 0.00 0.00 5.28
2522 2960 1.135344 GCTTCTACACACCGGAGAGAC 60.135 57.143 9.46 0.00 0.00 3.36
2563 3007 3.214123 ACGCTGCTACGCCCGATA 61.214 61.111 0.00 0.00 36.19 2.92
2570 3014 3.179830 CTGCTACGCCCGATAATGATAC 58.820 50.000 0.00 0.00 0.00 2.24
2676 3127 7.291182 TCCCCTGGTTGATTTCTGAAATAAAAA 59.709 33.333 15.14 8.09 0.00 1.94
2736 3187 4.082571 TGCTGCTCTTTCTTTGATTTAGCC 60.083 41.667 0.00 0.00 0.00 3.93
2738 3189 5.355350 GCTGCTCTTTCTTTGATTTAGCCTA 59.645 40.000 0.00 0.00 0.00 3.93
2740 3191 7.416101 GCTGCTCTTTCTTTGATTTAGCCTAAT 60.416 37.037 0.00 0.00 0.00 1.73
2742 3193 8.462016 TGCTCTTTCTTTGATTTAGCCTAATTC 58.538 33.333 0.45 0.45 0.00 2.17
2743 3194 8.681806 GCTCTTTCTTTGATTTAGCCTAATTCT 58.318 33.333 7.62 0.00 0.00 2.40
2760 3211 2.327325 TCTAGGACCTTCCAAGTGCT 57.673 50.000 0.00 0.00 39.61 4.40
2761 3212 2.180276 TCTAGGACCTTCCAAGTGCTC 58.820 52.381 0.00 0.00 39.61 4.26
2762 3213 1.208293 CTAGGACCTTCCAAGTGCTCC 59.792 57.143 0.00 0.00 39.61 4.70
2764 3215 0.606673 GGACCTTCCAAGTGCTCCAC 60.607 60.000 0.00 0.00 36.28 4.02
2765 3216 0.951040 GACCTTCCAAGTGCTCCACG 60.951 60.000 0.00 0.00 39.64 4.94
2766 3217 1.071471 CCTTCCAAGTGCTCCACGT 59.929 57.895 0.00 0.00 39.64 4.49
2767 3218 0.535102 CCTTCCAAGTGCTCCACGTT 60.535 55.000 0.00 0.00 39.64 3.99
2768 3219 0.588252 CTTCCAAGTGCTCCACGTTG 59.412 55.000 0.00 0.00 39.64 4.10
2769 3220 0.107410 TTCCAAGTGCTCCACGTTGT 60.107 50.000 0.00 0.00 39.64 3.32
2770 3221 0.753867 TCCAAGTGCTCCACGTTGTA 59.246 50.000 0.00 0.00 39.64 2.41
2771 3222 0.865769 CCAAGTGCTCCACGTTGTAC 59.134 55.000 0.00 0.00 39.64 2.90
2772 3223 1.540363 CCAAGTGCTCCACGTTGTACT 60.540 52.381 0.00 0.00 39.64 2.73
2773 3224 1.526887 CAAGTGCTCCACGTTGTACTG 59.473 52.381 4.91 0.00 39.64 2.74
2774 3225 0.033504 AGTGCTCCACGTTGTACTGG 59.966 55.000 0.00 0.00 39.64 4.00
2775 3226 0.249741 GTGCTCCACGTTGTACTGGT 60.250 55.000 0.00 0.00 0.00 4.00
2776 3227 0.249699 TGCTCCACGTTGTACTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
2777 3228 1.566018 GCTCCACGTTGTACTGGTGC 61.566 60.000 9.35 9.35 39.24 5.01
2778 3229 0.033504 CTCCACGTTGTACTGGTGCT 59.966 55.000 0.00 0.00 0.00 4.40
2779 3230 1.271379 CTCCACGTTGTACTGGTGCTA 59.729 52.381 0.00 0.00 0.00 3.49
2780 3231 1.687660 TCCACGTTGTACTGGTGCTAA 59.312 47.619 0.00 0.00 0.00 3.09
2781 3232 2.066262 CCACGTTGTACTGGTGCTAAG 58.934 52.381 0.00 0.00 0.00 2.18
2782 3233 2.288579 CCACGTTGTACTGGTGCTAAGA 60.289 50.000 0.00 0.00 0.00 2.10
2783 3234 3.386486 CACGTTGTACTGGTGCTAAGAA 58.614 45.455 0.00 0.00 0.00 2.52
2784 3235 3.994392 CACGTTGTACTGGTGCTAAGAAT 59.006 43.478 0.00 0.00 0.00 2.40
2785 3236 3.994392 ACGTTGTACTGGTGCTAAGAATG 59.006 43.478 0.00 0.00 0.00 2.67
2786 3237 3.181520 CGTTGTACTGGTGCTAAGAATGC 60.182 47.826 0.00 0.00 0.00 3.56
2787 3238 2.985896 TGTACTGGTGCTAAGAATGCC 58.014 47.619 0.00 0.00 0.00 4.40
2788 3239 2.304470 TGTACTGGTGCTAAGAATGCCA 59.696 45.455 0.00 0.00 0.00 4.92
2789 3240 2.814805 ACTGGTGCTAAGAATGCCAT 57.185 45.000 0.00 0.00 0.00 4.40
2790 3241 3.931907 ACTGGTGCTAAGAATGCCATA 57.068 42.857 0.00 0.00 0.00 2.74
2791 3242 4.443978 ACTGGTGCTAAGAATGCCATAT 57.556 40.909 0.00 0.00 0.00 1.78
2792 3243 5.567037 ACTGGTGCTAAGAATGCCATATA 57.433 39.130 0.00 0.00 0.00 0.86
2793 3244 5.555017 ACTGGTGCTAAGAATGCCATATAG 58.445 41.667 0.00 0.00 0.00 1.31
2794 3245 4.910195 TGGTGCTAAGAATGCCATATAGG 58.090 43.478 0.00 0.00 41.84 2.57
2795 3246 4.350816 TGGTGCTAAGAATGCCATATAGGT 59.649 41.667 0.00 0.00 40.61 3.08
2796 3247 5.546110 TGGTGCTAAGAATGCCATATAGGTA 59.454 40.000 0.00 0.00 40.61 3.08
2797 3248 6.043822 TGGTGCTAAGAATGCCATATAGGTAA 59.956 38.462 0.00 0.00 40.61 2.85
2798 3249 6.940298 GGTGCTAAGAATGCCATATAGGTAAA 59.060 38.462 0.00 0.00 40.61 2.01
2799 3250 7.447238 GGTGCTAAGAATGCCATATAGGTAAAA 59.553 37.037 0.00 0.00 40.61 1.52
2800 3251 8.507249 GTGCTAAGAATGCCATATAGGTAAAAG 58.493 37.037 0.00 0.00 40.61 2.27
2801 3252 8.436778 TGCTAAGAATGCCATATAGGTAAAAGA 58.563 33.333 0.00 0.00 40.61 2.52
2802 3253 9.454859 GCTAAGAATGCCATATAGGTAAAAGAT 57.545 33.333 0.00 0.00 40.61 2.40
2806 3257 9.458727 AGAATGCCATATAGGTAAAAGATGATG 57.541 33.333 0.00 0.00 40.61 3.07
2807 3258 9.236006 GAATGCCATATAGGTAAAAGATGATGT 57.764 33.333 0.00 0.00 40.61 3.06
2808 3259 7.984422 TGCCATATAGGTAAAAGATGATGTG 57.016 36.000 0.00 0.00 40.61 3.21
2809 3260 7.744733 TGCCATATAGGTAAAAGATGATGTGA 58.255 34.615 0.00 0.00 40.61 3.58
2810 3261 7.661437 TGCCATATAGGTAAAAGATGATGTGAC 59.339 37.037 0.00 0.00 40.61 3.67
2811 3262 7.661437 GCCATATAGGTAAAAGATGATGTGACA 59.339 37.037 0.00 0.00 40.61 3.58
2812 3263 9.559732 CCATATAGGTAAAAGATGATGTGACAA 57.440 33.333 0.00 0.00 0.00 3.18
2818 3269 9.520515 AGGTAAAAGATGATGTGACAAAGTATT 57.479 29.630 0.00 0.00 0.00 1.89
2846 3297 9.606631 AAAGAAGAGATAGAACATTATGGTGAC 57.393 33.333 0.00 0.00 0.00 3.67
2847 3298 8.546083 AGAAGAGATAGAACATTATGGTGACT 57.454 34.615 0.00 0.00 0.00 3.41
2848 3299 8.637986 AGAAGAGATAGAACATTATGGTGACTC 58.362 37.037 0.00 0.00 0.00 3.36
2849 3300 7.296628 AGAGATAGAACATTATGGTGACTCC 57.703 40.000 0.00 0.00 0.00 3.85
2850 3301 6.015856 AGAGATAGAACATTATGGTGACTCCG 60.016 42.308 0.00 0.00 39.52 4.63
2851 3302 3.543680 AGAACATTATGGTGACTCCGG 57.456 47.619 0.00 0.00 39.52 5.14
2852 3303 3.104512 AGAACATTATGGTGACTCCGGA 58.895 45.455 2.93 2.93 39.52 5.14
2853 3304 3.517901 AGAACATTATGGTGACTCCGGAA 59.482 43.478 5.23 0.00 39.52 4.30
2854 3305 3.543680 ACATTATGGTGACTCCGGAAG 57.456 47.619 5.23 2.09 39.52 3.46
2868 3319 1.685302 CGGAAGGAAACGTTGCATTG 58.315 50.000 11.60 0.00 0.00 2.82
2869 3320 1.001815 CGGAAGGAAACGTTGCATTGT 60.002 47.619 11.60 0.00 0.00 2.71
2870 3321 2.224549 CGGAAGGAAACGTTGCATTGTA 59.775 45.455 11.60 0.00 0.00 2.41
2871 3322 3.304123 CGGAAGGAAACGTTGCATTGTAA 60.304 43.478 11.60 0.00 0.00 2.41
2872 3323 4.612943 GGAAGGAAACGTTGCATTGTAAA 58.387 39.130 11.60 0.00 0.00 2.01
2873 3324 4.679654 GGAAGGAAACGTTGCATTGTAAAG 59.320 41.667 11.60 0.00 0.00 1.85
2874 3325 5.506649 GGAAGGAAACGTTGCATTGTAAAGA 60.507 40.000 11.60 0.00 0.00 2.52
2875 3326 5.108385 AGGAAACGTTGCATTGTAAAGAG 57.892 39.130 8.91 0.00 0.00 2.85
2876 3327 4.578928 AGGAAACGTTGCATTGTAAAGAGT 59.421 37.500 8.91 0.00 0.00 3.24
2877 3328 5.761234 AGGAAACGTTGCATTGTAAAGAGTA 59.239 36.000 8.91 0.00 0.00 2.59
2878 3329 6.073222 AGGAAACGTTGCATTGTAAAGAGTAG 60.073 38.462 8.91 0.00 0.00 2.57
2879 3330 6.293244 GGAAACGTTGCATTGTAAAGAGTAGT 60.293 38.462 8.91 0.00 0.00 2.73
2880 3331 6.613755 AACGTTGCATTGTAAAGAGTAGTT 57.386 33.333 0.00 0.00 0.00 2.24
2881 3332 5.985781 ACGTTGCATTGTAAAGAGTAGTTG 58.014 37.500 7.35 0.00 0.00 3.16
2882 3333 4.846137 CGTTGCATTGTAAAGAGTAGTTGC 59.154 41.667 0.00 0.00 0.00 4.17
2883 3334 5.334105 CGTTGCATTGTAAAGAGTAGTTGCT 60.334 40.000 0.00 0.00 0.00 3.91
2884 3335 5.611796 TGCATTGTAAAGAGTAGTTGCTG 57.388 39.130 0.00 0.00 0.00 4.41
2885 3336 5.304778 TGCATTGTAAAGAGTAGTTGCTGA 58.695 37.500 0.00 0.00 0.00 4.26
2886 3337 5.409520 TGCATTGTAAAGAGTAGTTGCTGAG 59.590 40.000 0.00 0.00 0.00 3.35
2887 3338 5.639506 GCATTGTAAAGAGTAGTTGCTGAGA 59.360 40.000 0.00 0.00 0.00 3.27
2888 3339 6.314896 GCATTGTAAAGAGTAGTTGCTGAGAT 59.685 38.462 0.00 0.00 0.00 2.75
2889 3340 7.148340 GCATTGTAAAGAGTAGTTGCTGAGATT 60.148 37.037 0.00 0.00 0.00 2.40
2890 3341 8.725148 CATTGTAAAGAGTAGTTGCTGAGATTT 58.275 33.333 0.00 0.00 0.00 2.17
2891 3342 8.677148 TTGTAAAGAGTAGTTGCTGAGATTTT 57.323 30.769 0.00 0.00 0.00 1.82
2892 3343 9.772973 TTGTAAAGAGTAGTTGCTGAGATTTTA 57.227 29.630 0.00 0.00 0.00 1.52
2893 3344 9.772973 TGTAAAGAGTAGTTGCTGAGATTTTAA 57.227 29.630 0.00 0.00 0.00 1.52
2897 3348 7.756558 AGAGTAGTTGCTGAGATTTTAAATGC 58.243 34.615 0.00 0.00 0.00 3.56
2898 3349 7.391554 AGAGTAGTTGCTGAGATTTTAAATGCA 59.608 33.333 0.00 0.00 0.00 3.96
2899 3350 7.308435 AGTAGTTGCTGAGATTTTAAATGCAC 58.692 34.615 0.00 0.00 0.00 4.57
2900 3351 6.336842 AGTTGCTGAGATTTTAAATGCACT 57.663 33.333 0.00 0.00 0.00 4.40
2901 3352 6.752168 AGTTGCTGAGATTTTAAATGCACTT 58.248 32.000 0.00 0.00 0.00 3.16
2902 3353 7.885297 AGTTGCTGAGATTTTAAATGCACTTA 58.115 30.769 0.00 0.00 0.00 2.24
2903 3354 8.025445 AGTTGCTGAGATTTTAAATGCACTTAG 58.975 33.333 0.00 0.00 0.00 2.18
2904 3355 6.324819 TGCTGAGATTTTAAATGCACTTAGC 58.675 36.000 11.82 11.82 45.96 3.09
2917 3368 4.465040 GCACTTAGCATCTCATGTAAGC 57.535 45.455 0.00 0.00 44.79 3.09
2918 3369 3.873361 GCACTTAGCATCTCATGTAAGCA 59.127 43.478 0.00 0.00 44.79 3.91
2919 3370 4.260538 GCACTTAGCATCTCATGTAAGCAC 60.261 45.833 0.00 0.00 44.79 4.40
2920 3371 4.272018 CACTTAGCATCTCATGTAAGCACC 59.728 45.833 0.00 0.00 32.27 5.01
2921 3372 4.163078 ACTTAGCATCTCATGTAAGCACCT 59.837 41.667 0.00 0.00 32.27 4.00
2922 3373 5.363868 ACTTAGCATCTCATGTAAGCACCTA 59.636 40.000 0.00 0.00 32.27 3.08
2923 3374 4.970860 AGCATCTCATGTAAGCACCTAT 57.029 40.909 0.00 0.00 0.00 2.57
2924 3375 4.639334 AGCATCTCATGTAAGCACCTATG 58.361 43.478 0.00 0.00 0.00 2.23
2940 3391 3.525199 ACCTATGCATTGGAAGAGACCTT 59.475 43.478 30.28 4.88 34.81 3.50
2942 3393 5.191722 ACCTATGCATTGGAAGAGACCTTAA 59.808 40.000 30.28 0.00 31.62 1.85
2946 3397 5.385198 TGCATTGGAAGAGACCTTAAAAGT 58.615 37.500 0.00 0.00 31.62 2.66
2959 3410 4.102996 ACCTTAAAAGTGGTACCTCGGAAA 59.897 41.667 14.36 4.07 34.36 3.13
2960 3411 5.065235 CCTTAAAAGTGGTACCTCGGAAAA 58.935 41.667 14.36 4.41 0.00 2.29
2974 3425 5.189934 ACCTCGGAAAACAAAGAGATCCTAT 59.810 40.000 0.00 0.00 32.84 2.57
2978 3429 4.339530 GGAAAACAAAGAGATCCTATGCCC 59.660 45.833 0.00 0.00 0.00 5.36
2979 3430 4.591321 AAACAAAGAGATCCTATGCCCA 57.409 40.909 0.00 0.00 0.00 5.36
2981 3432 3.891049 ACAAAGAGATCCTATGCCCAAC 58.109 45.455 0.00 0.00 0.00 3.77
2983 3434 2.088104 AGAGATCCTATGCCCAACGA 57.912 50.000 0.00 0.00 0.00 3.85
2984 3435 1.967066 AGAGATCCTATGCCCAACGAG 59.033 52.381 0.00 0.00 0.00 4.18
2985 3436 1.001406 GAGATCCTATGCCCAACGAGG 59.999 57.143 0.00 0.00 37.03 4.63
2997 3448 2.289565 CCAACGAGGGAGGAAAATAGC 58.710 52.381 0.00 0.00 0.00 2.97
2998 3449 2.092914 CCAACGAGGGAGGAAAATAGCT 60.093 50.000 0.00 0.00 0.00 3.32
2999 3450 3.610911 CAACGAGGGAGGAAAATAGCTT 58.389 45.455 0.00 0.00 0.00 3.74
3000 3451 3.545366 ACGAGGGAGGAAAATAGCTTC 57.455 47.619 0.00 0.00 0.00 3.86
3001 3452 2.170817 ACGAGGGAGGAAAATAGCTTCC 59.829 50.000 0.00 0.00 44.61 3.46
3003 3454 2.366640 GGGAGGAAAATAGCTTCCCC 57.633 55.000 6.15 4.15 45.28 4.81
3004 3455 1.569072 GGGAGGAAAATAGCTTCCCCA 59.431 52.381 6.15 0.00 45.28 4.96
3005 3456 2.423517 GGGAGGAAAATAGCTTCCCCAG 60.424 54.545 6.15 0.00 45.28 4.45
3006 3457 2.509964 GGAGGAAAATAGCTTCCCCAGA 59.490 50.000 0.00 0.00 45.28 3.86
3007 3458 3.434310 GGAGGAAAATAGCTTCCCCAGAG 60.434 52.174 0.00 0.00 45.28 3.35
3008 3459 2.092158 AGGAAAATAGCTTCCCCAGAGC 60.092 50.000 0.00 0.00 45.28 4.09
3009 3460 2.302260 GAAAATAGCTTCCCCAGAGCC 58.698 52.381 0.00 0.00 41.03 4.70
3010 3461 1.298953 AAATAGCTTCCCCAGAGCCA 58.701 50.000 0.00 0.00 41.03 4.75
3011 3462 0.842635 AATAGCTTCCCCAGAGCCAG 59.157 55.000 0.00 0.00 41.03 4.85
3012 3463 0.030705 ATAGCTTCCCCAGAGCCAGA 60.031 55.000 0.00 0.00 41.03 3.86
3013 3464 0.689080 TAGCTTCCCCAGAGCCAGAG 60.689 60.000 0.00 0.00 41.03 3.35
3014 3465 3.041469 GCTTCCCCAGAGCCAGAGG 62.041 68.421 0.00 0.00 34.06 3.69
3015 3466 2.285668 TTCCCCAGAGCCAGAGGG 60.286 66.667 0.00 0.00 42.44 4.30
3016 3467 3.284251 TCCCCAGAGCCAGAGGGA 61.284 66.667 0.00 0.56 46.54 4.20
3017 3468 2.040043 CCCCAGAGCCAGAGGGAT 60.040 66.667 0.00 0.00 45.80 3.85
3051 3502 2.093500 TGAGAGAATGGACGGTTGATGG 60.093 50.000 0.00 0.00 0.00 3.51
3056 3507 3.947834 AGAATGGACGGTTGATGGAATTC 59.052 43.478 0.00 0.00 0.00 2.17
3065 3516 4.383118 CGGTTGATGGAATTCCTAGTCACT 60.383 45.833 24.73 1.68 36.82 3.41
3066 3517 5.119694 GGTTGATGGAATTCCTAGTCACTC 58.880 45.833 24.73 17.77 36.82 3.51
3067 3518 5.104735 GGTTGATGGAATTCCTAGTCACTCT 60.105 44.000 24.73 0.00 36.82 3.24
3068 3519 5.860941 TGATGGAATTCCTAGTCACTCTC 57.139 43.478 24.73 8.32 36.82 3.20
3069 3520 4.339530 TGATGGAATTCCTAGTCACTCTCG 59.660 45.833 24.73 0.00 36.82 4.04
3070 3521 2.427453 TGGAATTCCTAGTCACTCTCGC 59.573 50.000 24.73 0.00 36.82 5.03
3071 3522 2.427453 GGAATTCCTAGTCACTCTCGCA 59.573 50.000 17.73 0.00 0.00 5.10
3072 3523 3.490078 GGAATTCCTAGTCACTCTCGCAG 60.490 52.174 17.73 0.00 0.00 5.18
3183 3635 8.360390 TCCAAATCTTTCTTTCTTTTCTTAGCC 58.640 33.333 0.00 0.00 0.00 3.93
3226 3685 0.460311 ATGGCACGTAGAGGTAGCAC 59.540 55.000 0.00 0.00 0.00 4.40
3269 3728 0.884704 CCGCTGGCACTACAAACTGT 60.885 55.000 0.00 0.00 0.00 3.55
3298 3757 1.173913 ACGCAGGATAAGTTTTGGCC 58.826 50.000 0.00 0.00 0.00 5.36
3346 3805 2.590007 CTAGTGGGCATGGCGAGC 60.590 66.667 13.76 5.74 0.00 5.03
3390 3849 4.435970 CAGCAGGAGGGCATGGCA 62.436 66.667 22.06 0.00 35.83 4.92
3475 3934 3.575965 AAACAATGTTCGGAATCTGGC 57.424 42.857 0.00 0.00 0.00 4.85
3541 4000 1.639298 GCGTTCATCAGGTGTCAGCC 61.639 60.000 0.00 0.00 0.00 4.85
3545 4004 1.775385 TCATCAGGTGTCAGCCGATA 58.225 50.000 0.51 0.00 0.00 2.92
3617 4076 4.644234 TGTCTTCATTTTTCTTCTGCCACA 59.356 37.500 0.00 0.00 0.00 4.17
3619 4078 3.648339 TCATTTTTCTTCTGCCACAGC 57.352 42.857 0.00 0.00 40.48 4.40
3645 4112 3.092301 CCCGATGAGCATCCATAGTAGA 58.908 50.000 4.98 0.00 34.40 2.59
3672 4144 0.183492 TGCAAGGGGGTATCAGATGC 59.817 55.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 7.776030 TGAATAGAACACAAACCCTAACAAGAA 59.224 33.333 0.00 0.00 0.00 2.52
230 232 0.179045 GCCCACCAACGATGCTAGAT 60.179 55.000 0.00 0.00 0.00 1.98
266 268 2.103094 CCACCAAAGATAGATCTGCCGA 59.897 50.000 5.18 0.00 37.19 5.54
374 376 1.827789 GCACCCCAGAACAGCAACA 60.828 57.895 0.00 0.00 0.00 3.33
413 415 2.504244 CAGTCGGGAAGTCGTCGC 60.504 66.667 0.00 0.00 35.85 5.19
459 461 4.240103 CATCGCCCCTCCATCGCA 62.240 66.667 0.00 0.00 0.00 5.10
639 641 4.169696 TGTGATTAGGGGCCGCCG 62.170 66.667 17.56 0.00 0.00 6.46
641 643 2.902343 GCTGTGATTAGGGGCCGC 60.902 66.667 12.88 12.88 0.00 6.53
673 676 4.854173 TGCTCTCTCTGTCTCTATCTTGT 58.146 43.478 0.00 0.00 0.00 3.16
709 726 0.611896 CTGATTGGGGTTGGGGTGAC 60.612 60.000 0.00 0.00 0.00 3.67
712 729 1.071314 TGACTGATTGGGGTTGGGGT 61.071 55.000 0.00 0.00 0.00 4.95
847 1213 0.688087 TCGGGCTTGGGGTTTTGTTT 60.688 50.000 0.00 0.00 0.00 2.83
870 1236 1.566404 CGCCACTTTGTTGTTTTCCC 58.434 50.000 0.00 0.00 0.00 3.97
912 1281 0.324830 ACGAGAGGGAAGGGAAGAGG 60.325 60.000 0.00 0.00 0.00 3.69
915 1284 0.739561 CGTACGAGAGGGAAGGGAAG 59.260 60.000 10.44 0.00 0.00 3.46
916 1285 0.329261 TCGTACGAGAGGGAAGGGAA 59.671 55.000 15.28 0.00 0.00 3.97
917 1286 0.107312 CTCGTACGAGAGGGAAGGGA 60.107 60.000 36.12 1.92 44.53 4.20
918 1287 0.107312 TCTCGTACGAGAGGGAAGGG 60.107 60.000 37.30 15.32 45.26 3.95
919 1288 3.473147 TCTCGTACGAGAGGGAAGG 57.527 57.895 37.30 16.01 45.26 3.46
1608 2008 4.028490 TGGCCGTCACCCATGGTC 62.028 66.667 11.73 0.00 36.12 4.02
1717 2117 3.246112 TACCTTGGTGGGCGTGCT 61.246 61.111 2.03 0.00 41.11 4.40
1718 2118 3.053896 GTACCTTGGTGGGCGTGC 61.054 66.667 2.03 0.00 41.11 5.34
1760 2169 3.306989 GGTTGATGATATGGCGATGAGGA 60.307 47.826 0.00 0.00 0.00 3.71
1777 2186 0.896479 TCCAGTCCACGATCGGTTGA 60.896 55.000 20.98 9.64 0.00 3.18
1826 2240 0.377554 CGGACACGTAGTAGCTGAGG 59.622 60.000 0.00 0.00 41.61 3.86
1862 2276 3.056322 GGTCAGGCTGCAATGAAAGAAAT 60.056 43.478 10.34 0.00 0.00 2.17
1998 2412 2.106338 TCTTCCACATCTTGTCCTGCAA 59.894 45.455 0.00 0.00 35.50 4.08
2069 2483 0.032952 CCTCCTGGTCGAACACGAAA 59.967 55.000 0.00 0.00 37.78 3.46
2093 2507 1.806568 GTCCGCCAGACTCTCTCTG 59.193 63.158 0.00 0.00 45.63 3.35
2096 2510 2.034376 ACGTCCGCCAGACTCTCT 59.966 61.111 0.55 0.00 43.91 3.10
2490 2928 0.531200 GTAGAAGCGTAGGTGTGGCT 59.469 55.000 0.00 0.00 39.47 4.75
2516 2954 7.531280 TTTCAAATCTTGATCATCGTCTCTC 57.469 36.000 0.00 0.00 39.84 3.20
2563 3007 5.642063 ACAAAAATCGGAGTGTCGTATCATT 59.358 36.000 0.00 0.00 0.00 2.57
2570 3014 4.985044 AGTAACAAAAATCGGAGTGTCG 57.015 40.909 0.00 0.00 0.00 4.35
2676 3127 3.016736 GGGTTCGATGATTTCCACATGT 58.983 45.455 0.00 0.00 0.00 3.21
2736 3187 5.104735 AGCACTTGGAAGGTCCTAGAATTAG 60.105 44.000 11.90 0.00 41.05 1.73
2738 3189 3.589288 AGCACTTGGAAGGTCCTAGAATT 59.411 43.478 11.90 0.00 41.05 2.17
2740 3191 2.567615 GAGCACTTGGAAGGTCCTAGAA 59.432 50.000 11.90 0.00 41.05 2.10
2742 3193 1.208293 GGAGCACTTGGAAGGTCCTAG 59.792 57.143 4.47 4.47 46.24 3.02
2743 3194 1.276622 GGAGCACTTGGAAGGTCCTA 58.723 55.000 0.00 0.00 46.24 2.94
2744 3195 2.070639 GGAGCACTTGGAAGGTCCT 58.929 57.895 0.00 0.00 46.24 3.85
2745 3196 4.724262 GGAGCACTTGGAAGGTCC 57.276 61.111 0.00 0.00 44.14 4.46
2746 3197 0.951040 CGTGGAGCACTTGGAAGGTC 60.951 60.000 0.00 0.00 31.34 3.85
2747 3198 1.071471 CGTGGAGCACTTGGAAGGT 59.929 57.895 0.00 0.00 31.34 3.50
2749 3200 0.588252 CAACGTGGAGCACTTGGAAG 59.412 55.000 0.00 0.00 31.34 3.46
2751 3202 0.753867 TACAACGTGGAGCACTTGGA 59.246 50.000 0.00 0.00 31.72 3.53
2752 3203 0.865769 GTACAACGTGGAGCACTTGG 59.134 55.000 0.00 0.00 31.72 3.61
2753 3204 1.526887 CAGTACAACGTGGAGCACTTG 59.473 52.381 0.00 0.00 32.79 3.16
2754 3205 1.540363 CCAGTACAACGTGGAGCACTT 60.540 52.381 0.00 0.00 35.67 3.16
2755 3206 0.033504 CCAGTACAACGTGGAGCACT 59.966 55.000 0.00 0.00 35.67 4.40
2756 3207 0.249741 ACCAGTACAACGTGGAGCAC 60.250 55.000 0.00 0.00 37.27 4.40
2757 3208 0.249699 CACCAGTACAACGTGGAGCA 60.250 55.000 0.00 0.00 37.27 4.26
2758 3209 1.566018 GCACCAGTACAACGTGGAGC 61.566 60.000 0.00 5.81 42.14 4.70
2760 3211 1.330234 TAGCACCAGTACAACGTGGA 58.670 50.000 0.00 0.00 37.27 4.02
2761 3212 2.066262 CTTAGCACCAGTACAACGTGG 58.934 52.381 0.00 0.00 39.98 4.94
2762 3213 3.021269 TCTTAGCACCAGTACAACGTG 57.979 47.619 0.00 0.00 0.00 4.49
2764 3215 3.181520 GCATTCTTAGCACCAGTACAACG 60.182 47.826 0.00 0.00 0.00 4.10
2765 3216 3.127030 GGCATTCTTAGCACCAGTACAAC 59.873 47.826 0.00 0.00 0.00 3.32
2766 3217 3.244735 TGGCATTCTTAGCACCAGTACAA 60.245 43.478 0.00 0.00 0.00 2.41
2767 3218 2.304470 TGGCATTCTTAGCACCAGTACA 59.696 45.455 0.00 0.00 0.00 2.90
2768 3219 2.985896 TGGCATTCTTAGCACCAGTAC 58.014 47.619 0.00 0.00 0.00 2.73
2769 3220 3.931907 ATGGCATTCTTAGCACCAGTA 57.068 42.857 0.00 0.00 33.03 2.74
2770 3221 2.814805 ATGGCATTCTTAGCACCAGT 57.185 45.000 0.00 0.00 33.03 4.00
2771 3222 4.940046 CCTATATGGCATTCTTAGCACCAG 59.060 45.833 4.78 0.00 33.03 4.00
2772 3223 4.350816 ACCTATATGGCATTCTTAGCACCA 59.649 41.667 4.78 0.00 40.22 4.17
2773 3224 4.911390 ACCTATATGGCATTCTTAGCACC 58.089 43.478 4.78 0.00 40.22 5.01
2774 3225 7.979444 TTTACCTATATGGCATTCTTAGCAC 57.021 36.000 4.78 0.00 40.22 4.40
2775 3226 8.436778 TCTTTTACCTATATGGCATTCTTAGCA 58.563 33.333 4.78 0.00 40.22 3.49
2776 3227 8.848474 TCTTTTACCTATATGGCATTCTTAGC 57.152 34.615 4.78 0.00 40.22 3.09
2780 3231 9.458727 CATCATCTTTTACCTATATGGCATTCT 57.541 33.333 4.78 0.00 40.22 2.40
2781 3232 9.236006 ACATCATCTTTTACCTATATGGCATTC 57.764 33.333 4.78 0.00 40.22 2.67
2782 3233 9.017509 CACATCATCTTTTACCTATATGGCATT 57.982 33.333 4.78 0.00 40.22 3.56
2783 3234 8.385491 TCACATCATCTTTTACCTATATGGCAT 58.615 33.333 4.88 4.88 40.22 4.40
2784 3235 7.661437 GTCACATCATCTTTTACCTATATGGCA 59.339 37.037 0.00 0.00 40.22 4.92
2785 3236 7.661437 TGTCACATCATCTTTTACCTATATGGC 59.339 37.037 0.00 0.00 40.22 4.40
2786 3237 9.559732 TTGTCACATCATCTTTTACCTATATGG 57.440 33.333 0.00 0.00 42.93 2.74
2792 3243 9.520515 AATACTTTGTCACATCATCTTTTACCT 57.479 29.630 0.00 0.00 0.00 3.08
2820 3271 9.606631 GTCACCATAATGTTCTATCTCTTCTTT 57.393 33.333 0.00 0.00 0.00 2.52
2821 3272 8.986991 AGTCACCATAATGTTCTATCTCTTCTT 58.013 33.333 0.00 0.00 0.00 2.52
2822 3273 8.546083 AGTCACCATAATGTTCTATCTCTTCT 57.454 34.615 0.00 0.00 0.00 2.85
2823 3274 7.870445 GGAGTCACCATAATGTTCTATCTCTTC 59.130 40.741 0.00 0.00 38.79 2.87
2824 3275 7.470702 CGGAGTCACCATAATGTTCTATCTCTT 60.471 40.741 0.00 0.00 38.90 2.85
2825 3276 6.015856 CGGAGTCACCATAATGTTCTATCTCT 60.016 42.308 0.00 0.00 38.90 3.10
2826 3277 6.153067 CGGAGTCACCATAATGTTCTATCTC 58.847 44.000 0.00 0.00 38.90 2.75
2827 3278 5.011125 CCGGAGTCACCATAATGTTCTATCT 59.989 44.000 0.00 0.00 38.90 1.98
2828 3279 5.010719 TCCGGAGTCACCATAATGTTCTATC 59.989 44.000 0.00 0.00 38.90 2.08
2829 3280 4.899457 TCCGGAGTCACCATAATGTTCTAT 59.101 41.667 0.00 0.00 38.90 1.98
2830 3281 4.283337 TCCGGAGTCACCATAATGTTCTA 58.717 43.478 0.00 0.00 38.90 2.10
2831 3282 3.104512 TCCGGAGTCACCATAATGTTCT 58.895 45.455 0.00 0.00 38.90 3.01
2832 3283 3.536956 TCCGGAGTCACCATAATGTTC 57.463 47.619 0.00 0.00 38.90 3.18
2833 3284 3.370527 CCTTCCGGAGTCACCATAATGTT 60.371 47.826 3.34 0.00 38.90 2.71
2834 3285 2.170607 CCTTCCGGAGTCACCATAATGT 59.829 50.000 3.34 0.00 38.90 2.71
2835 3286 2.434336 TCCTTCCGGAGTCACCATAATG 59.566 50.000 3.34 0.00 38.90 1.90
2836 3287 2.759355 TCCTTCCGGAGTCACCATAAT 58.241 47.619 3.34 0.00 38.90 1.28
2837 3288 2.241281 TCCTTCCGGAGTCACCATAA 57.759 50.000 3.34 0.00 38.90 1.90
2838 3289 2.235402 GTTTCCTTCCGGAGTCACCATA 59.765 50.000 3.34 0.00 41.25 2.74
2839 3290 1.003233 GTTTCCTTCCGGAGTCACCAT 59.997 52.381 3.34 0.00 41.25 3.55
2840 3291 0.395312 GTTTCCTTCCGGAGTCACCA 59.605 55.000 3.34 0.00 41.25 4.17
2841 3292 0.669625 CGTTTCCTTCCGGAGTCACC 60.670 60.000 3.34 0.00 41.25 4.02
2842 3293 0.033090 ACGTTTCCTTCCGGAGTCAC 59.967 55.000 3.34 0.00 41.25 3.67
2843 3294 0.754472 AACGTTTCCTTCCGGAGTCA 59.246 50.000 3.34 0.00 41.25 3.41
2844 3295 1.145803 CAACGTTTCCTTCCGGAGTC 58.854 55.000 3.34 0.00 41.25 3.36
2845 3296 0.883370 GCAACGTTTCCTTCCGGAGT 60.883 55.000 3.34 0.00 41.25 3.85
2846 3297 0.882927 TGCAACGTTTCCTTCCGGAG 60.883 55.000 3.34 0.00 41.25 4.63
2847 3298 0.250553 ATGCAACGTTTCCTTCCGGA 60.251 50.000 0.00 0.00 37.60 5.14
2848 3299 0.596082 AATGCAACGTTTCCTTCCGG 59.404 50.000 0.00 0.00 0.00 5.14
2849 3300 1.001815 ACAATGCAACGTTTCCTTCCG 60.002 47.619 0.00 0.00 0.00 4.30
2850 3301 2.793278 ACAATGCAACGTTTCCTTCC 57.207 45.000 0.00 0.00 0.00 3.46
2851 3302 5.516090 TCTTTACAATGCAACGTTTCCTTC 58.484 37.500 0.00 0.00 0.00 3.46
2852 3303 5.067283 ACTCTTTACAATGCAACGTTTCCTT 59.933 36.000 0.00 0.00 0.00 3.36
2853 3304 4.578928 ACTCTTTACAATGCAACGTTTCCT 59.421 37.500 0.00 0.00 0.00 3.36
2854 3305 4.855531 ACTCTTTACAATGCAACGTTTCC 58.144 39.130 0.00 0.00 0.00 3.13
2855 3306 6.656003 ACTACTCTTTACAATGCAACGTTTC 58.344 36.000 0.00 0.00 0.00 2.78
2856 3307 6.613755 ACTACTCTTTACAATGCAACGTTT 57.386 33.333 0.00 0.00 0.00 3.60
2857 3308 6.427150 CAACTACTCTTTACAATGCAACGTT 58.573 36.000 0.00 0.00 0.00 3.99
2858 3309 5.560183 GCAACTACTCTTTACAATGCAACGT 60.560 40.000 0.00 0.00 33.00 3.99
2859 3310 4.846137 GCAACTACTCTTTACAATGCAACG 59.154 41.667 0.00 0.00 33.00 4.10
2860 3311 5.853282 CAGCAACTACTCTTTACAATGCAAC 59.147 40.000 0.00 0.00 35.11 4.17
2861 3312 5.762711 TCAGCAACTACTCTTTACAATGCAA 59.237 36.000 0.00 0.00 35.11 4.08
2862 3313 5.304778 TCAGCAACTACTCTTTACAATGCA 58.695 37.500 0.00 0.00 35.11 3.96
2863 3314 5.639506 TCTCAGCAACTACTCTTTACAATGC 59.360 40.000 0.00 0.00 0.00 3.56
2864 3315 7.840342 ATCTCAGCAACTACTCTTTACAATG 57.160 36.000 0.00 0.00 0.00 2.82
2865 3316 8.854614 AAATCTCAGCAACTACTCTTTACAAT 57.145 30.769 0.00 0.00 0.00 2.71
2866 3317 8.677148 AAAATCTCAGCAACTACTCTTTACAA 57.323 30.769 0.00 0.00 0.00 2.41
2867 3318 9.772973 TTAAAATCTCAGCAACTACTCTTTACA 57.227 29.630 0.00 0.00 0.00 2.41
2871 3322 8.239998 GCATTTAAAATCTCAGCAACTACTCTT 58.760 33.333 0.00 0.00 0.00 2.85
2872 3323 7.391554 TGCATTTAAAATCTCAGCAACTACTCT 59.608 33.333 0.00 0.00 0.00 3.24
2873 3324 7.483059 GTGCATTTAAAATCTCAGCAACTACTC 59.517 37.037 0.00 0.00 31.78 2.59
2874 3325 7.175641 AGTGCATTTAAAATCTCAGCAACTACT 59.824 33.333 0.00 0.00 31.78 2.57
2875 3326 7.308435 AGTGCATTTAAAATCTCAGCAACTAC 58.692 34.615 0.00 0.00 31.78 2.73
2876 3327 7.452880 AGTGCATTTAAAATCTCAGCAACTA 57.547 32.000 0.00 0.00 31.78 2.24
2877 3328 6.336842 AGTGCATTTAAAATCTCAGCAACT 57.663 33.333 0.00 0.00 31.78 3.16
2878 3329 7.201384 GCTAAGTGCATTTAAAATCTCAGCAAC 60.201 37.037 3.09 0.00 42.31 4.17
2879 3330 6.808212 GCTAAGTGCATTTAAAATCTCAGCAA 59.192 34.615 3.09 0.00 42.31 3.91
2880 3331 6.324819 GCTAAGTGCATTTAAAATCTCAGCA 58.675 36.000 3.09 0.00 42.31 4.41
2881 3332 6.802950 GCTAAGTGCATTTAAAATCTCAGC 57.197 37.500 3.09 0.00 42.31 4.26
2896 3347 3.873361 TGCTTACATGAGATGCTAAGTGC 59.127 43.478 0.00 0.00 43.25 4.40
2897 3348 4.272018 GGTGCTTACATGAGATGCTAAGTG 59.728 45.833 0.00 0.00 31.98 3.16
2898 3349 4.163078 AGGTGCTTACATGAGATGCTAAGT 59.837 41.667 0.00 0.00 31.98 2.24
2899 3350 4.701765 AGGTGCTTACATGAGATGCTAAG 58.298 43.478 0.00 0.00 32.25 2.18
2900 3351 4.760530 AGGTGCTTACATGAGATGCTAA 57.239 40.909 0.00 0.00 0.00 3.09
2901 3352 5.787380 CATAGGTGCTTACATGAGATGCTA 58.213 41.667 0.00 0.00 0.00 3.49
2902 3353 4.639334 CATAGGTGCTTACATGAGATGCT 58.361 43.478 0.00 0.00 0.00 3.79
2916 3367 8.811114 TAAGGTCTCTTCCAATGCATAGGTGC 62.811 46.154 0.00 0.00 41.66 5.01
2917 3368 3.118112 AGGTCTCTTCCAATGCATAGGTG 60.118 47.826 0.00 0.00 0.00 4.00
2918 3369 3.118531 AGGTCTCTTCCAATGCATAGGT 58.881 45.455 0.00 0.00 0.00 3.08
2919 3370 3.853355 AGGTCTCTTCCAATGCATAGG 57.147 47.619 0.00 0.00 0.00 2.57
2920 3371 7.337942 ACTTTTAAGGTCTCTTCCAATGCATAG 59.662 37.037 0.00 0.00 34.59 2.23
2921 3372 7.121168 CACTTTTAAGGTCTCTTCCAATGCATA 59.879 37.037 0.00 0.00 34.59 3.14
2922 3373 6.012745 ACTTTTAAGGTCTCTTCCAATGCAT 58.987 36.000 0.00 0.00 34.59 3.96
2923 3374 5.241506 CACTTTTAAGGTCTCTTCCAATGCA 59.758 40.000 0.00 0.00 34.59 3.96
2924 3375 5.335976 CCACTTTTAAGGTCTCTTCCAATGC 60.336 44.000 0.00 0.00 34.59 3.56
2925 3376 5.770162 ACCACTTTTAAGGTCTCTTCCAATG 59.230 40.000 0.00 0.00 30.79 2.82
2926 3377 5.953571 ACCACTTTTAAGGTCTCTTCCAAT 58.046 37.500 0.00 0.00 30.79 3.16
2927 3378 5.382664 ACCACTTTTAAGGTCTCTTCCAA 57.617 39.130 0.00 0.00 30.79 3.53
2928 3379 5.221783 GGTACCACTTTTAAGGTCTCTTCCA 60.222 44.000 7.15 0.00 39.31 3.53
2929 3380 5.012871 AGGTACCACTTTTAAGGTCTCTTCC 59.987 44.000 15.94 0.00 39.31 3.46
2930 3381 6.111669 AGGTACCACTTTTAAGGTCTCTTC 57.888 41.667 15.94 0.00 39.31 2.87
2931 3382 5.279356 CGAGGTACCACTTTTAAGGTCTCTT 60.279 44.000 15.94 0.00 39.31 2.85
2932 3383 4.220163 CGAGGTACCACTTTTAAGGTCTCT 59.780 45.833 15.94 0.00 39.31 3.10
2933 3384 4.492611 CGAGGTACCACTTTTAAGGTCTC 58.507 47.826 15.94 0.00 39.31 3.36
2934 3385 3.260128 CCGAGGTACCACTTTTAAGGTCT 59.740 47.826 15.94 0.00 39.31 3.85
2935 3386 3.259123 TCCGAGGTACCACTTTTAAGGTC 59.741 47.826 15.94 0.00 39.31 3.85
2936 3387 3.242011 TCCGAGGTACCACTTTTAAGGT 58.758 45.455 15.94 0.00 41.89 3.50
2937 3388 3.967332 TCCGAGGTACCACTTTTAAGG 57.033 47.619 15.94 3.51 0.00 2.69
2940 3391 5.033589 TGTTTTCCGAGGTACCACTTTTA 57.966 39.130 15.94 0.00 0.00 1.52
2942 3393 3.564053 TGTTTTCCGAGGTACCACTTT 57.436 42.857 15.94 0.00 0.00 2.66
2946 3397 3.388676 TCTCTTTGTTTTCCGAGGTACCA 59.611 43.478 15.94 0.00 0.00 3.25
2959 3410 4.273318 GTTGGGCATAGGATCTCTTTGTT 58.727 43.478 0.00 0.00 0.00 2.83
2960 3411 3.682718 CGTTGGGCATAGGATCTCTTTGT 60.683 47.826 0.00 0.00 0.00 2.83
2978 3429 3.268023 AGCTATTTTCCTCCCTCGTTG 57.732 47.619 0.00 0.00 0.00 4.10
2979 3430 3.370633 GGAAGCTATTTTCCTCCCTCGTT 60.371 47.826 0.00 0.00 42.73 3.85
2981 3432 2.485657 GGGAAGCTATTTTCCTCCCTCG 60.486 54.545 9.74 0.00 44.90 4.63
2983 3434 1.853622 GGGGAAGCTATTTTCCTCCCT 59.146 52.381 15.42 0.00 44.90 4.20
2984 3435 1.569072 TGGGGAAGCTATTTTCCTCCC 59.431 52.381 8.66 8.66 45.48 4.30
2985 3436 2.509964 TCTGGGGAAGCTATTTTCCTCC 59.490 50.000 0.00 2.00 45.48 4.30
2986 3437 3.814625 CTCTGGGGAAGCTATTTTCCTC 58.185 50.000 2.26 0.00 46.13 3.71
2987 3438 2.092158 GCTCTGGGGAAGCTATTTTCCT 60.092 50.000 2.26 0.00 44.90 3.36
2988 3439 2.302260 GCTCTGGGGAAGCTATTTTCC 58.698 52.381 0.00 0.00 44.82 3.13
2989 3440 2.302260 GGCTCTGGGGAAGCTATTTTC 58.698 52.381 0.00 0.00 0.00 2.29
2990 3441 1.640670 TGGCTCTGGGGAAGCTATTTT 59.359 47.619 0.00 0.00 0.00 1.82
2991 3442 1.213926 CTGGCTCTGGGGAAGCTATTT 59.786 52.381 0.00 0.00 0.00 1.40
2992 3443 0.842635 CTGGCTCTGGGGAAGCTATT 59.157 55.000 0.00 0.00 0.00 1.73
2993 3444 0.030705 TCTGGCTCTGGGGAAGCTAT 60.031 55.000 0.00 0.00 0.00 2.97
2994 3445 0.689080 CTCTGGCTCTGGGGAAGCTA 60.689 60.000 0.00 0.00 0.00 3.32
2995 3446 1.994507 CTCTGGCTCTGGGGAAGCT 60.995 63.158 0.00 0.00 0.00 3.74
2996 3447 2.588989 CTCTGGCTCTGGGGAAGC 59.411 66.667 0.00 0.00 0.00 3.86
2997 3448 2.373707 CCCTCTGGCTCTGGGGAAG 61.374 68.421 0.00 0.00 41.25 3.46
2998 3449 2.285668 CCCTCTGGCTCTGGGGAA 60.286 66.667 0.00 0.00 41.25 3.97
2999 3450 3.284251 TCCCTCTGGCTCTGGGGA 61.284 66.667 8.84 0.00 44.76 4.81
3000 3451 2.040043 ATCCCTCTGGCTCTGGGG 60.040 66.667 8.84 0.00 41.22 4.96
3001 3452 0.189574 TAGATCCCTCTGGCTCTGGG 59.810 60.000 0.00 0.00 37.66 4.45
3002 3453 1.631405 CTAGATCCCTCTGGCTCTGG 58.369 60.000 0.00 0.00 37.66 3.86
3008 3459 0.399091 TGGGTGCTAGATCCCTCTGG 60.399 60.000 18.98 0.00 43.74 3.86
3009 3460 1.047002 CTGGGTGCTAGATCCCTCTG 58.953 60.000 18.98 9.10 43.74 3.35
3010 3461 0.937441 TCTGGGTGCTAGATCCCTCT 59.063 55.000 18.98 0.00 43.74 3.69
3011 3462 1.622811 CATCTGGGTGCTAGATCCCTC 59.377 57.143 18.98 0.51 43.74 4.30
3012 3463 1.221523 TCATCTGGGTGCTAGATCCCT 59.778 52.381 18.98 1.99 43.74 4.20
3013 3464 1.622811 CTCATCTGGGTGCTAGATCCC 59.377 57.143 13.63 13.63 43.67 3.85
3014 3465 2.562298 CTCTCATCTGGGTGCTAGATCC 59.438 54.545 0.00 0.00 32.75 3.36
3015 3466 3.495331 TCTCTCATCTGGGTGCTAGATC 58.505 50.000 0.00 0.00 32.75 2.75
3016 3467 3.609256 TCTCTCATCTGGGTGCTAGAT 57.391 47.619 0.00 0.00 35.34 1.98
3017 3468 3.388552 TTCTCTCATCTGGGTGCTAGA 57.611 47.619 0.00 0.00 0.00 2.43
3018 3469 3.244146 CCATTCTCTCATCTGGGTGCTAG 60.244 52.174 0.00 0.00 0.00 3.42
3019 3470 2.702478 CCATTCTCTCATCTGGGTGCTA 59.298 50.000 0.00 0.00 0.00 3.49
3020 3471 1.489649 CCATTCTCTCATCTGGGTGCT 59.510 52.381 0.00 0.00 0.00 4.40
3021 3472 1.487976 TCCATTCTCTCATCTGGGTGC 59.512 52.381 0.00 0.00 0.00 5.01
3022 3473 2.482664 CGTCCATTCTCTCATCTGGGTG 60.483 54.545 0.00 0.00 0.00 4.61
3051 3502 3.129638 ACTGCGAGAGTGACTAGGAATTC 59.870 47.826 0.00 0.00 31.75 2.17
3056 3507 1.668751 GAGACTGCGAGAGTGACTAGG 59.331 57.143 0.00 0.00 33.83 3.02
3065 3516 2.461945 CGGTAGCGAGACTGCGAGA 61.462 63.158 9.07 0.00 40.67 4.04
3066 3517 1.978712 TTCGGTAGCGAGACTGCGAG 61.979 60.000 17.37 0.00 40.67 5.03
3067 3518 1.374343 ATTCGGTAGCGAGACTGCGA 61.374 55.000 17.37 0.79 40.67 5.10
3068 3519 0.525668 AATTCGGTAGCGAGACTGCG 60.526 55.000 17.37 0.00 40.67 5.18
3069 3520 1.588861 GAAATTCGGTAGCGAGACTGC 59.411 52.381 17.37 4.09 0.00 4.40
3070 3521 2.194271 GGAAATTCGGTAGCGAGACTG 58.806 52.381 17.37 0.00 0.00 3.51
3071 3522 1.822990 TGGAAATTCGGTAGCGAGACT 59.177 47.619 17.37 5.52 0.00 3.24
3072 3523 2.288961 TGGAAATTCGGTAGCGAGAC 57.711 50.000 17.37 9.73 0.00 3.36
3226 3685 6.293027 GGCATTTTCTTCACTTCCAAATTGTG 60.293 38.462 0.00 0.00 0.00 3.33
3257 3716 3.377439 TGCGTGTAGACAGTTTGTAGTG 58.623 45.455 0.00 0.00 0.00 2.74
3258 3717 3.720949 TGCGTGTAGACAGTTTGTAGT 57.279 42.857 0.00 0.00 0.00 2.73
3259 3718 3.121463 CGTTGCGTGTAGACAGTTTGTAG 60.121 47.826 0.00 0.00 0.00 2.74
3269 3728 0.812549 TATCCTGCGTTGCGTGTAGA 59.187 50.000 0.00 0.00 0.00 2.59
3346 3805 0.384725 GCTACGCGCTGCATTATTGG 60.385 55.000 17.16 0.00 35.14 3.16
3366 3825 4.834453 CCCTCCTGCTGCTCGCTG 62.834 72.222 0.00 0.21 40.11 5.18
3475 3934 1.138047 CGCTACTTACGCCGAACTGG 61.138 60.000 0.00 0.00 42.50 4.00
3541 4000 2.748605 GAGTTGCTCCATGAGGTATCG 58.251 52.381 0.00 0.00 35.89 2.92
3617 4076 2.937379 GATGCTCATCGGGCACAGCT 62.937 60.000 0.00 0.00 42.69 4.24
3619 4078 1.890979 GGATGCTCATCGGGCACAG 60.891 63.158 0.00 0.00 42.69 3.66
3645 4112 3.785887 TGATACCCCCTTGCATTCTACTT 59.214 43.478 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.