Multiple sequence alignment - TraesCS3B01G194000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G194000 chr3B 100.000 3292 0 0 1 3292 214286430 214283139 0.000000e+00 6080
1 TraesCS3B01G194000 chr3B 89.426 662 40 14 2660 3292 11237917 11238577 0.000000e+00 808
2 TraesCS3B01G194000 chr3B 91.385 325 28 0 1 325 399964502 399964178 2.330000e-121 446
3 TraesCS3B01G194000 chr3A 92.274 2045 88 36 328 2329 165089569 165087552 0.000000e+00 2837
4 TraesCS3B01G194000 chr3D 94.046 1562 64 16 197 1748 148223123 148224665 0.000000e+00 2342
5 TraesCS3B01G194000 chr3D 89.396 745 52 19 1745 2468 148224722 148225460 0.000000e+00 913
6 TraesCS3B01G194000 chr3D 92.025 326 25 1 1 325 148084257 148084582 1.080000e-124 457
7 TraesCS3B01G194000 chr1B 90.634 662 31 17 2661 3292 40370933 40370273 0.000000e+00 850
8 TraesCS3B01G194000 chr2B 89.985 659 35 16 2660 3289 18927671 18928327 0.000000e+00 822
9 TraesCS3B01G194000 chr2B 94.898 98 4 1 2657 2753 784504342 784504245 5.690000e-33 152
10 TraesCS3B01G194000 chr2B 81.699 153 17 7 1033 1181 85177910 85177765 2.080000e-22 117
11 TraesCS3B01G194000 chr2B 79.739 153 20 6 1033 1181 85074018 85074163 2.090000e-17 100
12 TraesCS3B01G194000 chr4B 89.818 658 37 15 2661 3289 644378062 644378718 0.000000e+00 817
13 TraesCS3B01G194000 chr4B 80.935 278 41 9 1440 1711 380653772 380654043 3.330000e-50 209
14 TraesCS3B01G194000 chr4B 91.667 108 5 3 2661 2765 537632863 537632757 2.650000e-31 147
15 TraesCS3B01G194000 chr2D 94.216 536 30 1 2757 3292 572376229 572375695 0.000000e+00 817
16 TraesCS3B01G194000 chr2D 89.362 658 44 15 2661 3292 44919951 44919294 0.000000e+00 804
17 TraesCS3B01G194000 chr2D 81.526 249 41 5 1442 1686 175331615 175331862 2.000000e-47 200
18 TraesCS3B01G194000 chr2D 80.645 155 19 7 1033 1183 54487979 54487832 3.470000e-20 110
19 TraesCS3B01G194000 chr2D 80.392 153 19 7 1033 1181 54317524 54317669 4.490000e-19 106
20 TraesCS3B01G194000 chr4A 89.666 658 38 14 2664 3292 724779414 724778758 0.000000e+00 811
21 TraesCS3B01G194000 chr4A 89.426 662 40 14 2660 3292 712111298 712110638 0.000000e+00 808
22 TraesCS3B01G194000 chr4A 89.378 659 40 14 2660 3289 712450716 712451373 0.000000e+00 802
23 TraesCS3B01G194000 chr4A 84.993 673 60 15 2660 3292 739876881 739876210 0.000000e+00 645
24 TraesCS3B01G194000 chrUn 93.333 540 34 2 2754 3292 83958167 83957629 0.000000e+00 797
25 TraesCS3B01G194000 chr7D 88.341 669 44 19 2657 3292 20005054 20004387 0.000000e+00 773
26 TraesCS3B01G194000 chr2A 85.586 666 61 17 2660 3292 9319752 9320415 0.000000e+00 665
27 TraesCS3B01G194000 chr2A 81.206 282 43 7 1440 1718 54882610 54882884 5.530000e-53 219
28 TraesCS3B01G194000 chr2A 80.800 250 41 5 1442 1686 175468037 175468284 4.340000e-44 189
29 TraesCS3B01G194000 chr5B 84.036 664 62 18 2660 3292 281364632 281363982 1.690000e-167 599
30 TraesCS3B01G194000 chr5B 90.491 326 30 1 1 325 417410860 417411185 2.350000e-116 429
31 TraesCS3B01G194000 chr5B 94.737 95 5 0 2659 2753 695419594 695419688 7.360000e-32 148
32 TraesCS3B01G194000 chr5B 94.737 95 5 0 2659 2753 695772701 695772795 7.360000e-32 148
33 TraesCS3B01G194000 chr5D 92.025 326 24 2 1 325 512553425 512553101 1.080000e-124 457
34 TraesCS3B01G194000 chr5D 89.908 327 29 4 1 325 253187993 253187669 5.080000e-113 418
35 TraesCS3B01G194000 chr4D 91.265 332 28 1 1 331 474945713 474945382 5.010000e-123 451
36 TraesCS3B01G194000 chr7B 91.104 326 28 1 1 325 369112214 369112539 1.080000e-119 440
37 TraesCS3B01G194000 chr1D 89.970 329 31 2 1 327 263048136 263047808 1.090000e-114 424
38 TraesCS3B01G194000 chr1D 88.529 340 36 3 1 339 249133969 249134306 3.060000e-110 409
39 TraesCS3B01G194000 chr6D 86.577 149 19 1 1438 1586 60487531 60487384 2.630000e-36 163
40 TraesCS3B01G194000 chr6B 86.713 143 18 1 1438 1580 134664377 134664236 1.220000e-34 158
41 TraesCS3B01G194000 chr6A 78.491 265 39 9 1438 1686 77099667 77099405 1.220000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G194000 chr3B 214283139 214286430 3291 True 6080.0 6080 100.000 1 3292 1 chr3B.!!$R1 3291
1 TraesCS3B01G194000 chr3B 11237917 11238577 660 False 808.0 808 89.426 2660 3292 1 chr3B.!!$F1 632
2 TraesCS3B01G194000 chr3A 165087552 165089569 2017 True 2837.0 2837 92.274 328 2329 1 chr3A.!!$R1 2001
3 TraesCS3B01G194000 chr3D 148223123 148225460 2337 False 1627.5 2342 91.721 197 2468 2 chr3D.!!$F2 2271
4 TraesCS3B01G194000 chr1B 40370273 40370933 660 True 850.0 850 90.634 2661 3292 1 chr1B.!!$R1 631
5 TraesCS3B01G194000 chr2B 18927671 18928327 656 False 822.0 822 89.985 2660 3289 1 chr2B.!!$F1 629
6 TraesCS3B01G194000 chr4B 644378062 644378718 656 False 817.0 817 89.818 2661 3289 1 chr4B.!!$F2 628
7 TraesCS3B01G194000 chr2D 572375695 572376229 534 True 817.0 817 94.216 2757 3292 1 chr2D.!!$R3 535
8 TraesCS3B01G194000 chr2D 44919294 44919951 657 True 804.0 804 89.362 2661 3292 1 chr2D.!!$R1 631
9 TraesCS3B01G194000 chr4A 724778758 724779414 656 True 811.0 811 89.666 2664 3292 1 chr4A.!!$R2 628
10 TraesCS3B01G194000 chr4A 712110638 712111298 660 True 808.0 808 89.426 2660 3292 1 chr4A.!!$R1 632
11 TraesCS3B01G194000 chr4A 712450716 712451373 657 False 802.0 802 89.378 2660 3289 1 chr4A.!!$F1 629
12 TraesCS3B01G194000 chr4A 739876210 739876881 671 True 645.0 645 84.993 2660 3292 1 chr4A.!!$R3 632
13 TraesCS3B01G194000 chrUn 83957629 83958167 538 True 797.0 797 93.333 2754 3292 1 chrUn.!!$R1 538
14 TraesCS3B01G194000 chr7D 20004387 20005054 667 True 773.0 773 88.341 2657 3292 1 chr7D.!!$R1 635
15 TraesCS3B01G194000 chr2A 9319752 9320415 663 False 665.0 665 85.586 2660 3292 1 chr2A.!!$F1 632
16 TraesCS3B01G194000 chr5B 281363982 281364632 650 True 599.0 599 84.036 2660 3292 1 chr5B.!!$R1 632


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.034337 TTGACGGGAAAGAACGAGGG 59.966 55.0 0.0 0.0 0.0 4.30 F
124 125 0.250770 AACCTTTCCGAAGCAGACCC 60.251 55.0 0.0 0.0 0.0 4.46 F
1189 1220 0.255890 ACTGCCCGGTAAGAATGCAT 59.744 50.0 0.0 0.0 0.0 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1059 1090 0.312416 CGATGATCTCCTGGTCCGTC 59.688 60.0 0.00 0.0 0.00 4.79 R
1425 1464 0.314618 TCTGCATGCACGCACAAATT 59.685 45.0 18.46 0.0 36.86 1.82 R
2645 2783 0.037605 CGGTAAGTGCTCGAAGGGTT 60.038 55.0 0.00 0.0 0.00 4.11 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.362242 ACCGCTTAGCCTGTTCTGA 58.638 52.632 0.00 0.00 0.00 3.27
19 20 0.037232 ACCGCTTAGCCTGTTCTGAC 60.037 55.000 0.00 0.00 0.00 3.51
20 21 0.037326 CCGCTTAGCCTGTTCTGACA 60.037 55.000 0.00 0.00 0.00 3.58
21 22 1.608025 CCGCTTAGCCTGTTCTGACAA 60.608 52.381 0.00 0.00 34.85 3.18
22 23 1.728971 CGCTTAGCCTGTTCTGACAAG 59.271 52.381 0.00 0.00 34.85 3.16
23 24 2.079925 GCTTAGCCTGTTCTGACAAGG 58.920 52.381 0.00 1.26 34.85 3.61
24 25 2.551071 GCTTAGCCTGTTCTGACAAGGT 60.551 50.000 0.00 0.00 34.85 3.50
25 26 3.744660 CTTAGCCTGTTCTGACAAGGTT 58.255 45.455 6.67 3.77 34.85 3.50
26 27 2.262423 AGCCTGTTCTGACAAGGTTC 57.738 50.000 6.67 0.00 34.85 3.62
27 28 1.490490 AGCCTGTTCTGACAAGGTTCA 59.510 47.619 6.67 0.00 34.85 3.18
28 29 2.092429 AGCCTGTTCTGACAAGGTTCAA 60.092 45.455 6.67 0.00 34.85 2.69
29 30 2.687935 GCCTGTTCTGACAAGGTTCAAA 59.312 45.455 6.67 0.00 34.85 2.69
30 31 3.489229 GCCTGTTCTGACAAGGTTCAAAC 60.489 47.826 6.67 0.00 34.85 2.93
31 32 3.694072 CCTGTTCTGACAAGGTTCAAACA 59.306 43.478 0.00 0.00 34.85 2.83
32 33 4.339247 CCTGTTCTGACAAGGTTCAAACAT 59.661 41.667 0.00 0.00 34.85 2.71
33 34 5.530915 CCTGTTCTGACAAGGTTCAAACATA 59.469 40.000 0.00 0.00 34.85 2.29
34 35 6.039270 CCTGTTCTGACAAGGTTCAAACATAA 59.961 38.462 0.00 0.00 34.85 1.90
35 36 7.026631 TGTTCTGACAAGGTTCAAACATAAG 57.973 36.000 0.00 0.00 31.49 1.73
36 37 6.039270 TGTTCTGACAAGGTTCAAACATAAGG 59.961 38.462 0.00 0.00 31.49 2.69
37 38 5.935945 TCTGACAAGGTTCAAACATAAGGA 58.064 37.500 0.00 0.00 0.00 3.36
38 39 5.997746 TCTGACAAGGTTCAAACATAAGGAG 59.002 40.000 0.00 0.00 0.00 3.69
39 40 5.070001 TGACAAGGTTCAAACATAAGGAGG 58.930 41.667 0.00 0.00 0.00 4.30
40 41 4.407365 ACAAGGTTCAAACATAAGGAGGG 58.593 43.478 0.00 0.00 0.00 4.30
41 42 4.105697 ACAAGGTTCAAACATAAGGAGGGA 59.894 41.667 0.00 0.00 0.00 4.20
42 43 4.302559 AGGTTCAAACATAAGGAGGGAC 57.697 45.455 0.00 0.00 0.00 4.46
43 44 3.655777 AGGTTCAAACATAAGGAGGGACA 59.344 43.478 0.00 0.00 0.00 4.02
44 45 4.105697 AGGTTCAAACATAAGGAGGGACAA 59.894 41.667 0.00 0.00 0.00 3.18
45 46 4.459337 GGTTCAAACATAAGGAGGGACAAG 59.541 45.833 0.00 0.00 0.00 3.16
46 47 3.686016 TCAAACATAAGGAGGGACAAGC 58.314 45.455 0.00 0.00 0.00 4.01
47 48 3.330701 TCAAACATAAGGAGGGACAAGCT 59.669 43.478 0.00 0.00 0.00 3.74
48 49 3.636153 AACATAAGGAGGGACAAGCTC 57.364 47.619 0.00 0.00 0.00 4.09
49 50 2.551270 ACATAAGGAGGGACAAGCTCA 58.449 47.619 0.00 0.00 0.00 4.26
50 51 2.912956 ACATAAGGAGGGACAAGCTCAA 59.087 45.455 0.00 0.00 0.00 3.02
51 52 3.525199 ACATAAGGAGGGACAAGCTCAAT 59.475 43.478 0.00 0.00 0.00 2.57
52 53 4.018050 ACATAAGGAGGGACAAGCTCAATT 60.018 41.667 0.00 0.00 0.00 2.32
53 54 2.503895 AGGAGGGACAAGCTCAATTG 57.496 50.000 0.00 0.00 36.22 2.32
54 55 1.988107 AGGAGGGACAAGCTCAATTGA 59.012 47.619 8.12 8.12 34.20 2.57
55 56 2.087646 GGAGGGACAAGCTCAATTGAC 58.912 52.381 3.38 2.06 34.20 3.18
56 57 1.734465 GAGGGACAAGCTCAATTGACG 59.266 52.381 3.38 2.41 34.20 4.35
57 58 0.804989 GGGACAAGCTCAATTGACGG 59.195 55.000 3.38 0.00 34.20 4.79
58 59 0.804989 GGACAAGCTCAATTGACGGG 59.195 55.000 3.38 0.00 34.20 5.28
59 60 1.610624 GGACAAGCTCAATTGACGGGA 60.611 52.381 3.38 0.00 34.20 5.14
60 61 2.151202 GACAAGCTCAATTGACGGGAA 58.849 47.619 3.38 0.00 34.20 3.97
61 62 2.552315 GACAAGCTCAATTGACGGGAAA 59.448 45.455 3.38 0.00 34.20 3.13
62 63 2.554032 ACAAGCTCAATTGACGGGAAAG 59.446 45.455 3.38 0.00 34.20 2.62
63 64 2.813754 CAAGCTCAATTGACGGGAAAGA 59.186 45.455 3.38 0.00 31.55 2.52
64 65 3.140325 AGCTCAATTGACGGGAAAGAA 57.860 42.857 3.38 0.00 0.00 2.52
65 66 2.814336 AGCTCAATTGACGGGAAAGAAC 59.186 45.455 3.38 0.00 0.00 3.01
66 67 2.412847 GCTCAATTGACGGGAAAGAACG 60.413 50.000 3.38 0.00 0.00 3.95
67 68 3.064207 CTCAATTGACGGGAAAGAACGA 58.936 45.455 3.38 0.00 0.00 3.85
68 69 3.064207 TCAATTGACGGGAAAGAACGAG 58.936 45.455 3.38 0.00 0.00 4.18
69 70 2.094762 ATTGACGGGAAAGAACGAGG 57.905 50.000 0.00 0.00 0.00 4.63
70 71 0.034337 TTGACGGGAAAGAACGAGGG 59.966 55.000 0.00 0.00 0.00 4.30
71 72 1.117142 TGACGGGAAAGAACGAGGGT 61.117 55.000 0.00 0.00 0.00 4.34
72 73 0.669625 GACGGGAAAGAACGAGGGTG 60.670 60.000 0.00 0.00 0.00 4.61
73 74 2.033194 CGGGAAAGAACGAGGGTGC 61.033 63.158 0.00 0.00 0.00 5.01
74 75 1.072505 GGGAAAGAACGAGGGTGCA 59.927 57.895 0.00 0.00 0.00 4.57
75 76 0.536460 GGGAAAGAACGAGGGTGCAA 60.536 55.000 0.00 0.00 0.00 4.08
76 77 1.314730 GGAAAGAACGAGGGTGCAAA 58.685 50.000 0.00 0.00 0.00 3.68
77 78 1.266989 GGAAAGAACGAGGGTGCAAAG 59.733 52.381 0.00 0.00 0.00 2.77
78 79 2.218603 GAAAGAACGAGGGTGCAAAGA 58.781 47.619 0.00 0.00 0.00 2.52
79 80 2.568623 AAGAACGAGGGTGCAAAGAT 57.431 45.000 0.00 0.00 0.00 2.40
80 81 3.695830 AAGAACGAGGGTGCAAAGATA 57.304 42.857 0.00 0.00 0.00 1.98
81 82 3.914426 AGAACGAGGGTGCAAAGATAT 57.086 42.857 0.00 0.00 0.00 1.63
82 83 5.353394 AAGAACGAGGGTGCAAAGATATA 57.647 39.130 0.00 0.00 0.00 0.86
83 84 4.950050 AGAACGAGGGTGCAAAGATATAG 58.050 43.478 0.00 0.00 0.00 1.31
84 85 4.406003 AGAACGAGGGTGCAAAGATATAGT 59.594 41.667 0.00 0.00 0.00 2.12
85 86 5.597182 AGAACGAGGGTGCAAAGATATAGTA 59.403 40.000 0.00 0.00 0.00 1.82
86 87 6.267928 AGAACGAGGGTGCAAAGATATAGTAT 59.732 38.462 0.00 0.00 0.00 2.12
87 88 7.450634 AGAACGAGGGTGCAAAGATATAGTATA 59.549 37.037 0.00 0.00 0.00 1.47
88 89 6.921914 ACGAGGGTGCAAAGATATAGTATAC 58.078 40.000 0.00 0.00 0.00 1.47
89 90 6.492429 ACGAGGGTGCAAAGATATAGTATACA 59.508 38.462 5.50 0.00 0.00 2.29
90 91 7.178628 ACGAGGGTGCAAAGATATAGTATACAT 59.821 37.037 5.50 0.00 0.00 2.29
91 92 7.489435 CGAGGGTGCAAAGATATAGTATACATG 59.511 40.741 5.50 0.00 0.00 3.21
92 93 8.207350 AGGGTGCAAAGATATAGTATACATGT 57.793 34.615 2.69 2.69 0.00 3.21
93 94 8.660435 AGGGTGCAAAGATATAGTATACATGTT 58.340 33.333 2.30 0.00 0.00 2.71
94 95 8.721478 GGGTGCAAAGATATAGTATACATGTTG 58.279 37.037 2.30 0.00 0.00 3.33
95 96 9.489084 GGTGCAAAGATATAGTATACATGTTGA 57.511 33.333 2.30 0.00 0.00 3.18
107 108 8.732746 AGTATACATGTTGATTCCACCTAAAC 57.267 34.615 2.30 0.00 0.00 2.01
108 109 7.773690 AGTATACATGTTGATTCCACCTAAACC 59.226 37.037 2.30 0.00 0.00 3.27
109 110 4.998051 ACATGTTGATTCCACCTAAACCT 58.002 39.130 0.00 0.00 0.00 3.50
110 111 5.393866 ACATGTTGATTCCACCTAAACCTT 58.606 37.500 0.00 0.00 0.00 3.50
111 112 5.838521 ACATGTTGATTCCACCTAAACCTTT 59.161 36.000 0.00 0.00 0.00 3.11
112 113 6.015434 ACATGTTGATTCCACCTAAACCTTTC 60.015 38.462 0.00 0.00 0.00 2.62
113 114 4.830600 TGTTGATTCCACCTAAACCTTTCC 59.169 41.667 0.00 0.00 0.00 3.13
114 115 3.681593 TGATTCCACCTAAACCTTTCCG 58.318 45.455 0.00 0.00 0.00 4.30
115 116 3.328343 TGATTCCACCTAAACCTTTCCGA 59.672 43.478 0.00 0.00 0.00 4.55
116 117 3.860968 TTCCACCTAAACCTTTCCGAA 57.139 42.857 0.00 0.00 0.00 4.30
117 118 3.412237 TCCACCTAAACCTTTCCGAAG 57.588 47.619 0.00 0.00 0.00 3.79
118 119 1.810755 CCACCTAAACCTTTCCGAAGC 59.189 52.381 0.00 0.00 0.00 3.86
119 120 2.500229 CACCTAAACCTTTCCGAAGCA 58.500 47.619 0.00 0.00 0.00 3.91
120 121 2.484264 CACCTAAACCTTTCCGAAGCAG 59.516 50.000 0.00 0.00 0.00 4.24
121 122 2.370849 ACCTAAACCTTTCCGAAGCAGA 59.629 45.455 0.00 0.00 0.00 4.26
122 123 2.742589 CCTAAACCTTTCCGAAGCAGAC 59.257 50.000 0.00 0.00 0.00 3.51
123 124 1.605753 AAACCTTTCCGAAGCAGACC 58.394 50.000 0.00 0.00 0.00 3.85
124 125 0.250770 AACCTTTCCGAAGCAGACCC 60.251 55.000 0.00 0.00 0.00 4.46
125 126 1.377333 CCTTTCCGAAGCAGACCCC 60.377 63.158 0.00 0.00 0.00 4.95
126 127 1.377333 CTTTCCGAAGCAGACCCCC 60.377 63.158 0.00 0.00 0.00 5.40
127 128 1.842381 CTTTCCGAAGCAGACCCCCT 61.842 60.000 0.00 0.00 0.00 4.79
128 129 1.838073 TTTCCGAAGCAGACCCCCTC 61.838 60.000 0.00 0.00 0.00 4.30
129 130 2.685380 CCGAAGCAGACCCCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
130 131 2.294078 CCGAAGCAGACCCCCTCTT 61.294 63.158 0.00 0.00 0.00 2.85
131 132 0.976073 CCGAAGCAGACCCCCTCTTA 60.976 60.000 0.00 0.00 0.00 2.10
132 133 0.902531 CGAAGCAGACCCCCTCTTAA 59.097 55.000 0.00 0.00 0.00 1.85
133 134 1.486726 CGAAGCAGACCCCCTCTTAAT 59.513 52.381 0.00 0.00 0.00 1.40
134 135 2.698797 CGAAGCAGACCCCCTCTTAATA 59.301 50.000 0.00 0.00 0.00 0.98
135 136 3.243907 CGAAGCAGACCCCCTCTTAATAG 60.244 52.174 0.00 0.00 0.00 1.73
136 137 3.423058 AGCAGACCCCCTCTTAATAGT 57.577 47.619 0.00 0.00 0.00 2.12
137 138 4.554553 AGCAGACCCCCTCTTAATAGTA 57.445 45.455 0.00 0.00 0.00 1.82
138 139 4.224762 AGCAGACCCCCTCTTAATAGTAC 58.775 47.826 0.00 0.00 0.00 2.73
139 140 3.965347 GCAGACCCCCTCTTAATAGTACA 59.035 47.826 0.00 0.00 0.00 2.90
140 141 4.407945 GCAGACCCCCTCTTAATAGTACAA 59.592 45.833 0.00 0.00 0.00 2.41
141 142 5.071923 GCAGACCCCCTCTTAATAGTACAAT 59.928 44.000 0.00 0.00 0.00 2.71
142 143 6.525629 CAGACCCCCTCTTAATAGTACAATG 58.474 44.000 0.00 0.00 0.00 2.82
143 144 6.099845 CAGACCCCCTCTTAATAGTACAATGT 59.900 42.308 0.00 0.00 0.00 2.71
144 145 6.677076 AGACCCCCTCTTAATAGTACAATGTT 59.323 38.462 0.00 0.00 0.00 2.71
145 146 6.896883 ACCCCCTCTTAATAGTACAATGTTC 58.103 40.000 0.00 0.00 0.00 3.18
146 147 6.126565 ACCCCCTCTTAATAGTACAATGTTCC 60.127 42.308 0.00 0.00 0.00 3.62
147 148 6.101296 CCCCCTCTTAATAGTACAATGTTCCT 59.899 42.308 0.00 0.00 0.00 3.36
148 149 7.291651 CCCCCTCTTAATAGTACAATGTTCCTA 59.708 40.741 0.00 0.00 0.00 2.94
149 150 8.881262 CCCCTCTTAATAGTACAATGTTCCTAT 58.119 37.037 0.00 0.00 0.00 2.57
150 151 9.712305 CCCTCTTAATAGTACAATGTTCCTATG 57.288 37.037 0.00 0.00 0.00 2.23
160 161 8.258708 AGTACAATGTTCCTATGACTAAACTCC 58.741 37.037 0.00 0.00 0.00 3.85
161 162 6.106673 ACAATGTTCCTATGACTAAACTCCG 58.893 40.000 0.00 0.00 0.00 4.63
162 163 4.119442 TGTTCCTATGACTAAACTCCGC 57.881 45.455 0.00 0.00 0.00 5.54
163 164 3.118884 TGTTCCTATGACTAAACTCCGCC 60.119 47.826 0.00 0.00 0.00 6.13
164 165 1.679680 TCCTATGACTAAACTCCGCCG 59.320 52.381 0.00 0.00 0.00 6.46
165 166 1.679680 CCTATGACTAAACTCCGCCGA 59.320 52.381 0.00 0.00 0.00 5.54
166 167 2.100252 CCTATGACTAAACTCCGCCGAA 59.900 50.000 0.00 0.00 0.00 4.30
167 168 2.754946 ATGACTAAACTCCGCCGAAA 57.245 45.000 0.00 0.00 0.00 3.46
168 169 2.529780 TGACTAAACTCCGCCGAAAA 57.470 45.000 0.00 0.00 0.00 2.29
169 170 2.836262 TGACTAAACTCCGCCGAAAAA 58.164 42.857 0.00 0.00 0.00 1.94
170 171 2.803956 TGACTAAACTCCGCCGAAAAAG 59.196 45.455 0.00 0.00 0.00 2.27
171 172 3.062042 GACTAAACTCCGCCGAAAAAGA 58.938 45.455 0.00 0.00 0.00 2.52
172 173 3.469739 ACTAAACTCCGCCGAAAAAGAA 58.530 40.909 0.00 0.00 0.00 2.52
173 174 3.878699 ACTAAACTCCGCCGAAAAAGAAA 59.121 39.130 0.00 0.00 0.00 2.52
174 175 2.768833 AACTCCGCCGAAAAAGAAAC 57.231 45.000 0.00 0.00 0.00 2.78
175 176 0.584876 ACTCCGCCGAAAAAGAAACG 59.415 50.000 0.00 0.00 0.00 3.60
176 177 0.724785 CTCCGCCGAAAAAGAAACGC 60.725 55.000 0.00 0.00 0.00 4.84
177 178 1.009449 CCGCCGAAAAAGAAACGCA 60.009 52.632 0.00 0.00 0.00 5.24
178 179 0.592754 CCGCCGAAAAAGAAACGCAA 60.593 50.000 0.00 0.00 0.00 4.85
180 181 1.595976 CGCCGAAAAAGAAACGCAAGA 60.596 47.619 0.00 0.00 43.62 3.02
181 182 2.456010 GCCGAAAAAGAAACGCAAGAA 58.544 42.857 0.00 0.00 43.62 2.52
182 183 2.855370 GCCGAAAAAGAAACGCAAGAAA 59.145 40.909 0.00 0.00 43.62 2.52
183 184 3.304826 GCCGAAAAAGAAACGCAAGAAAA 59.695 39.130 0.00 0.00 43.62 2.29
184 185 4.777846 GCCGAAAAAGAAACGCAAGAAAAC 60.778 41.667 0.00 0.00 43.62 2.43
185 186 4.324936 CCGAAAAAGAAACGCAAGAAAACA 59.675 37.500 0.00 0.00 43.62 2.83
186 187 5.237705 CGAAAAAGAAACGCAAGAAAACAC 58.762 37.500 0.00 0.00 43.62 3.32
187 188 5.524511 AAAAAGAAACGCAAGAAAACACC 57.475 34.783 0.00 0.00 43.62 4.16
188 189 2.468532 AGAAACGCAAGAAAACACCG 57.531 45.000 0.00 0.00 43.62 4.94
189 190 1.741145 AGAAACGCAAGAAAACACCGT 59.259 42.857 0.00 0.00 43.62 4.83
190 191 2.106418 GAAACGCAAGAAAACACCGTC 58.894 47.619 0.00 0.00 43.62 4.79
191 192 1.375551 AACGCAAGAAAACACCGTCT 58.624 45.000 0.00 0.00 43.62 4.18
192 193 1.375551 ACGCAAGAAAACACCGTCTT 58.624 45.000 0.00 0.00 43.62 3.01
193 194 1.329599 ACGCAAGAAAACACCGTCTTC 59.670 47.619 0.00 0.00 43.62 2.87
194 195 1.329292 CGCAAGAAAACACCGTCTTCA 59.671 47.619 0.00 0.00 43.02 3.02
195 196 2.032030 CGCAAGAAAACACCGTCTTCAT 60.032 45.455 0.00 0.00 43.02 2.57
203 204 8.209917 AGAAAACACCGTCTTCATAAATATCC 57.790 34.615 0.00 0.00 0.00 2.59
207 208 6.516718 ACACCGTCTTCATAAATATCCAGAG 58.483 40.000 0.00 0.00 0.00 3.35
213 214 6.937465 GTCTTCATAAATATCCAGAGGGGTTC 59.063 42.308 0.00 0.00 38.11 3.62
216 217 7.219601 TCATAAATATCCAGAGGGGTTCAAA 57.780 36.000 0.00 0.00 38.11 2.69
243 244 8.988934 TCGTCTTGTGCCATAAGATAAATTATC 58.011 33.333 7.18 4.89 36.63 1.75
263 264 4.926860 TCTGAAATAGTCAATGCACACG 57.073 40.909 0.00 0.00 35.22 4.49
264 265 4.565022 TCTGAAATAGTCAATGCACACGA 58.435 39.130 0.00 0.00 35.22 4.35
268 269 7.003939 TGAAATAGTCAATGCACACGATTAG 57.996 36.000 0.00 0.00 31.51 1.73
270 271 6.589830 AATAGTCAATGCACACGATTAGTC 57.410 37.500 0.00 0.00 0.00 2.59
273 274 1.006832 AATGCACACGATTAGTCCGC 58.993 50.000 0.00 0.00 0.00 5.54
304 305 3.383185 TGTCTTCAATCACCAAAACCACC 59.617 43.478 0.00 0.00 0.00 4.61
308 309 2.697751 TCAATCACCAAAACCACCAAGG 59.302 45.455 0.00 0.00 45.67 3.61
312 313 2.024846 TCACCAAAACCACCAAGGAAGA 60.025 45.455 0.00 0.00 41.22 2.87
325 326 5.835280 CACCAAGGAAGAAATATGCCCTAAT 59.165 40.000 0.00 0.00 0.00 1.73
337 338 6.840780 ATATGCCCTAATACCTTCAAATGC 57.159 37.500 0.00 0.00 0.00 3.56
341 342 4.278419 GCCCTAATACCTTCAAATGCGAAT 59.722 41.667 0.00 0.00 0.00 3.34
357 358 9.612620 CAAATGCGAATTTTTACTTCTCTAACT 57.387 29.630 0.00 0.00 0.00 2.24
386 387 3.430453 AGGTATCAGCTAGAGATGCTCC 58.570 50.000 11.45 9.30 38.92 4.70
445 449 6.915544 TCTGTCTTATGTACGTACAGTAGG 57.084 41.667 30.15 21.24 39.92 3.18
474 478 2.767069 CTGACGAAGAACCGTACGTAG 58.233 52.381 15.21 1.90 43.49 3.51
501 509 3.304559 GCTGTAGCGAAGTGACAGTATTG 59.695 47.826 3.46 0.00 41.92 1.90
981 999 1.645704 CTCTTCTTCGTCGGCTCCGA 61.646 60.000 6.95 6.95 46.87 4.55
996 1014 2.409651 CGACTCCGAGCTAGTGCC 59.590 66.667 0.00 0.00 40.80 5.01
1189 1220 0.255890 ACTGCCCGGTAAGAATGCAT 59.744 50.000 0.00 0.00 0.00 3.96
1231 1262 4.424566 GCCACGCCATGCAACCAG 62.425 66.667 0.00 0.00 0.00 4.00
1262 1293 9.620259 AAGTTTTGTTTCTATCTCTTTGACTCT 57.380 29.630 0.00 0.00 0.00 3.24
1263 1294 9.620259 AGTTTTGTTTCTATCTCTTTGACTCTT 57.380 29.630 0.00 0.00 0.00 2.85
1292 1323 2.622942 TGCACGAGCTTCCAAGAAAAAT 59.377 40.909 6.36 0.00 42.74 1.82
1293 1324 3.818210 TGCACGAGCTTCCAAGAAAAATA 59.182 39.130 6.36 0.00 42.74 1.40
1340 1375 7.012044 AGCTATCGACACCCATTTTTAATGTAC 59.988 37.037 0.00 0.00 0.00 2.90
1362 1397 4.804139 ACATATCATCGTTCGGAACAAGAC 59.196 41.667 19.91 0.00 0.00 3.01
1363 1398 3.594603 ATCATCGTTCGGAACAAGACT 57.405 42.857 19.91 0.00 0.00 3.24
1364 1399 2.672714 TCATCGTTCGGAACAAGACTG 58.327 47.619 19.91 9.43 0.00 3.51
1407 1446 5.907207 TGCTGAATATACTGAGAAGTGGAC 58.093 41.667 0.00 0.00 0.00 4.02
1742 1785 1.219124 CCACGACTCCATGAGGGTG 59.781 63.158 0.00 9.32 37.69 4.61
1762 1866 1.906757 CGTACCAAACCATACGCGTA 58.093 50.000 22.94 22.94 37.91 4.42
1763 1867 2.257894 CGTACCAAACCATACGCGTAA 58.742 47.619 24.55 6.98 37.91 3.18
1764 1868 2.027926 CGTACCAAACCATACGCGTAAC 59.972 50.000 24.55 12.15 37.91 2.50
1779 1883 2.401063 GCGTAACTCGATGAATCTACGC 59.599 50.000 14.83 14.83 45.80 4.42
1780 1884 3.614588 CGTAACTCGATGAATCTACGCA 58.385 45.455 0.00 0.00 42.86 5.24
1781 1885 3.417969 CGTAACTCGATGAATCTACGCAC 59.582 47.826 0.00 0.00 42.86 5.34
1783 1887 2.798680 ACTCGATGAATCTACGCACAC 58.201 47.619 0.00 0.00 0.00 3.82
1785 1889 2.526077 TCGATGAATCTACGCACACAC 58.474 47.619 0.00 0.00 0.00 3.82
1787 1891 2.279921 CGATGAATCTACGCACACACAG 59.720 50.000 0.00 0.00 0.00 3.66
1818 1933 7.833786 TGTCGGTCAACTTAATTACATACTCT 58.166 34.615 0.00 0.00 0.00 3.24
1819 1934 8.959548 TGTCGGTCAACTTAATTACATACTCTA 58.040 33.333 0.00 0.00 0.00 2.43
1820 1935 9.962783 GTCGGTCAACTTAATTACATACTCTAT 57.037 33.333 0.00 0.00 0.00 1.98
2126 2241 1.663379 CGGAGGTACATCTGGCGTCA 61.663 60.000 8.51 0.00 0.00 4.35
2222 2337 1.687612 CAACTGCATGGGAGGAGGT 59.312 57.895 0.00 0.00 0.00 3.85
2336 2453 5.551233 AGGTATATGCATGCACGTAATCTT 58.449 37.500 25.37 7.00 0.00 2.40
2345 2462 1.918609 GCACGTAATCTTCAGTCGACC 59.081 52.381 13.01 0.00 0.00 4.79
2346 2463 2.670229 GCACGTAATCTTCAGTCGACCA 60.670 50.000 13.01 0.00 0.00 4.02
2347 2464 3.172050 CACGTAATCTTCAGTCGACCAG 58.828 50.000 13.01 5.53 0.00 4.00
2348 2465 2.818432 ACGTAATCTTCAGTCGACCAGT 59.182 45.455 13.01 0.00 0.00 4.00
2349 2466 3.172050 CGTAATCTTCAGTCGACCAGTG 58.828 50.000 13.01 4.25 0.00 3.66
2350 2467 3.366070 CGTAATCTTCAGTCGACCAGTGT 60.366 47.826 13.01 1.92 0.00 3.55
2351 2468 2.732412 ATCTTCAGTCGACCAGTGTG 57.268 50.000 13.01 3.43 0.00 3.82
2352 2469 1.687563 TCTTCAGTCGACCAGTGTGA 58.312 50.000 13.01 6.12 0.00 3.58
2353 2470 1.609072 TCTTCAGTCGACCAGTGTGAG 59.391 52.381 13.01 7.37 0.00 3.51
2354 2471 1.338337 CTTCAGTCGACCAGTGTGAGT 59.662 52.381 13.01 0.00 0.00 3.41
2355 2472 2.265589 TCAGTCGACCAGTGTGAGTA 57.734 50.000 13.01 0.00 0.00 2.59
2356 2473 2.152016 TCAGTCGACCAGTGTGAGTAG 58.848 52.381 13.01 0.00 0.00 2.57
2357 2474 2.152016 CAGTCGACCAGTGTGAGTAGA 58.848 52.381 13.01 0.00 0.00 2.59
2358 2475 2.160615 CAGTCGACCAGTGTGAGTAGAG 59.839 54.545 13.01 0.00 0.00 2.43
2359 2476 2.152830 GTCGACCAGTGTGAGTAGAGT 58.847 52.381 3.51 0.00 0.00 3.24
2360 2477 2.160022 GTCGACCAGTGTGAGTAGAGTC 59.840 54.545 3.51 0.00 0.00 3.36
2361 2478 2.152016 CGACCAGTGTGAGTAGAGTCA 58.848 52.381 0.00 0.00 0.00 3.41
2370 2487 4.845621 GTGAGTAGAGTCACGAGTACTC 57.154 50.000 13.18 13.18 43.06 2.59
2383 2500 1.028868 AGTACTCGGGTAGCCACGAC 61.029 60.000 12.31 3.11 35.04 4.34
2393 2528 2.522185 GTAGCCACGACTGGGGATATA 58.478 52.381 0.00 0.00 38.13 0.86
2400 2535 4.369182 CACGACTGGGGATATAAACTGTC 58.631 47.826 0.00 0.00 0.00 3.51
2426 2561 6.234920 TCGATTTTATTTCCTCCACACTTGA 58.765 36.000 0.00 0.00 0.00 3.02
2427 2562 6.371548 TCGATTTTATTTCCTCCACACTTGAG 59.628 38.462 0.00 0.00 0.00 3.02
2445 2583 8.912988 ACACTTGAGGAACAAATTAATTTCTCA 58.087 29.630 18.84 18.84 38.08 3.27
2457 2595 6.770746 ATTAATTTCTCAATCAGTGCAGCT 57.229 33.333 0.00 0.00 0.00 4.24
2459 2597 4.698583 ATTTCTCAATCAGTGCAGCTTC 57.301 40.909 0.00 0.00 0.00 3.86
2460 2598 2.845363 TCTCAATCAGTGCAGCTTCA 57.155 45.000 0.00 0.00 0.00 3.02
2461 2599 3.345508 TCTCAATCAGTGCAGCTTCAT 57.654 42.857 0.00 0.00 0.00 2.57
2462 2600 3.007635 TCTCAATCAGTGCAGCTTCATG 58.992 45.455 0.00 0.00 0.00 3.07
2463 2601 2.747989 CTCAATCAGTGCAGCTTCATGT 59.252 45.455 0.00 0.00 0.00 3.21
2464 2602 2.486592 TCAATCAGTGCAGCTTCATGTG 59.513 45.455 0.00 0.00 0.00 3.21
2465 2603 2.484742 ATCAGTGCAGCTTCATGTGA 57.515 45.000 4.33 4.33 0.00 3.58
2467 2605 1.875514 TCAGTGCAGCTTCATGTGAAC 59.124 47.619 0.00 0.00 0.00 3.18
2468 2606 1.605232 CAGTGCAGCTTCATGTGAACA 59.395 47.619 0.00 0.00 0.00 3.18
2469 2607 1.878088 AGTGCAGCTTCATGTGAACAG 59.122 47.619 0.00 0.00 0.00 3.16
2470 2608 1.605710 GTGCAGCTTCATGTGAACAGT 59.394 47.619 0.00 0.00 0.00 3.55
2471 2609 1.875514 TGCAGCTTCATGTGAACAGTC 59.124 47.619 0.00 0.00 0.00 3.51
2472 2610 1.875514 GCAGCTTCATGTGAACAGTCA 59.124 47.619 0.00 0.00 0.00 3.41
2481 2619 2.071688 GTGAACAGTCACGCATCTCT 57.928 50.000 0.00 0.00 44.58 3.10
2482 2620 3.217599 GTGAACAGTCACGCATCTCTA 57.782 47.619 0.00 0.00 44.58 2.43
2483 2621 3.175152 GTGAACAGTCACGCATCTCTAG 58.825 50.000 0.00 0.00 44.58 2.43
2484 2622 2.189342 GAACAGTCACGCATCTCTAGC 58.811 52.381 0.00 0.00 0.00 3.42
2485 2623 1.177401 ACAGTCACGCATCTCTAGCA 58.823 50.000 0.00 0.00 0.00 3.49
2486 2624 1.546029 ACAGTCACGCATCTCTAGCAA 59.454 47.619 0.00 0.00 0.00 3.91
2487 2625 2.029020 ACAGTCACGCATCTCTAGCAAA 60.029 45.455 0.00 0.00 0.00 3.68
2488 2626 3.193263 CAGTCACGCATCTCTAGCAAAT 58.807 45.455 0.00 0.00 0.00 2.32
2489 2627 4.142160 ACAGTCACGCATCTCTAGCAAATA 60.142 41.667 0.00 0.00 0.00 1.40
2490 2628 4.987285 CAGTCACGCATCTCTAGCAAATAT 59.013 41.667 0.00 0.00 0.00 1.28
2491 2629 5.118357 CAGTCACGCATCTCTAGCAAATATC 59.882 44.000 0.00 0.00 0.00 1.63
2492 2630 4.387256 GTCACGCATCTCTAGCAAATATCC 59.613 45.833 0.00 0.00 0.00 2.59
2493 2631 4.281941 TCACGCATCTCTAGCAAATATCCT 59.718 41.667 0.00 0.00 0.00 3.24
2494 2632 5.476945 TCACGCATCTCTAGCAAATATCCTA 59.523 40.000 0.00 0.00 0.00 2.94
2495 2633 5.574830 CACGCATCTCTAGCAAATATCCTAC 59.425 44.000 0.00 0.00 0.00 3.18
2496 2634 5.478679 ACGCATCTCTAGCAAATATCCTACT 59.521 40.000 0.00 0.00 0.00 2.57
2497 2635 5.804473 CGCATCTCTAGCAAATATCCTACTG 59.196 44.000 0.00 0.00 0.00 2.74
2498 2636 6.105333 GCATCTCTAGCAAATATCCTACTGG 58.895 44.000 0.00 0.00 0.00 4.00
2499 2637 6.295575 GCATCTCTAGCAAATATCCTACTGGT 60.296 42.308 0.00 0.00 34.23 4.00
2500 2638 6.902771 TCTCTAGCAAATATCCTACTGGTC 57.097 41.667 0.00 0.00 34.23 4.02
2501 2639 6.373759 TCTCTAGCAAATATCCTACTGGTCA 58.626 40.000 0.00 0.00 34.23 4.02
2502 2640 6.265649 TCTCTAGCAAATATCCTACTGGTCAC 59.734 42.308 0.00 0.00 34.23 3.67
2503 2641 5.897250 TCTAGCAAATATCCTACTGGTCACA 59.103 40.000 0.00 0.00 34.23 3.58
2504 2642 4.770795 AGCAAATATCCTACTGGTCACAC 58.229 43.478 0.00 0.00 34.23 3.82
2505 2643 3.877508 GCAAATATCCTACTGGTCACACC 59.122 47.826 0.00 0.00 39.22 4.16
2506 2644 4.384208 GCAAATATCCTACTGGTCACACCT 60.384 45.833 0.00 0.00 39.58 4.00
2507 2645 5.360591 CAAATATCCTACTGGTCACACCTC 58.639 45.833 0.00 0.00 39.58 3.85
2508 2646 2.623418 ATCCTACTGGTCACACCTCA 57.377 50.000 0.00 0.00 39.58 3.86
2509 2647 2.623418 TCCTACTGGTCACACCTCAT 57.377 50.000 0.00 0.00 39.58 2.90
2510 2648 3.750501 TCCTACTGGTCACACCTCATA 57.249 47.619 0.00 0.00 39.58 2.15
2511 2649 4.055710 TCCTACTGGTCACACCTCATAA 57.944 45.455 0.00 0.00 39.58 1.90
2512 2650 3.767673 TCCTACTGGTCACACCTCATAAC 59.232 47.826 0.00 0.00 39.58 1.89
2513 2651 3.769844 CCTACTGGTCACACCTCATAACT 59.230 47.826 0.00 0.00 39.58 2.24
2514 2652 3.963428 ACTGGTCACACCTCATAACTC 57.037 47.619 0.00 0.00 39.58 3.01
2515 2653 3.239449 ACTGGTCACACCTCATAACTCA 58.761 45.455 0.00 0.00 39.58 3.41
2516 2654 3.840666 ACTGGTCACACCTCATAACTCAT 59.159 43.478 0.00 0.00 39.58 2.90
2517 2655 5.023452 ACTGGTCACACCTCATAACTCATA 58.977 41.667 0.00 0.00 39.58 2.15
2518 2656 5.663106 ACTGGTCACACCTCATAACTCATAT 59.337 40.000 0.00 0.00 39.58 1.78
2519 2657 5.917462 TGGTCACACCTCATAACTCATATG 58.083 41.667 0.00 0.00 39.58 1.78
2520 2658 5.163311 TGGTCACACCTCATAACTCATATGG 60.163 44.000 2.13 0.00 39.58 2.74
2521 2659 4.752101 GTCACACCTCATAACTCATATGGC 59.248 45.833 2.13 0.00 41.53 4.40
2522 2660 4.655649 TCACACCTCATAACTCATATGGCT 59.344 41.667 2.13 0.00 41.53 4.75
2523 2661 5.838521 TCACACCTCATAACTCATATGGCTA 59.161 40.000 2.13 0.00 41.53 3.93
2524 2662 6.498303 TCACACCTCATAACTCATATGGCTAT 59.502 38.462 2.13 0.00 41.53 2.97
2525 2663 6.815641 CACACCTCATAACTCATATGGCTATC 59.184 42.308 2.13 0.00 41.53 2.08
2526 2664 6.070538 ACACCTCATAACTCATATGGCTATCC 60.071 42.308 2.13 0.00 41.53 2.59
2542 2680 7.997773 TGGCTATCCAGTACTACTACTAATG 57.002 40.000 0.00 0.00 37.47 1.90
2543 2681 7.524290 TGGCTATCCAGTACTACTACTAATGT 58.476 38.462 0.00 0.00 37.47 2.71
2544 2682 7.447545 TGGCTATCCAGTACTACTACTAATGTG 59.552 40.741 0.00 0.00 37.47 3.21
2545 2683 7.094291 GGCTATCCAGTACTACTACTAATGTGG 60.094 44.444 0.00 0.00 31.46 4.17
2546 2684 6.651975 ATCCAGTACTACTACTAATGTGGC 57.348 41.667 0.00 0.00 31.46 5.01
2547 2685 5.512298 TCCAGTACTACTACTAATGTGGCA 58.488 41.667 0.00 0.00 31.46 4.92
2548 2686 5.359009 TCCAGTACTACTACTAATGTGGCAC 59.641 44.000 11.55 11.55 31.46 5.01
2549 2687 5.451520 CCAGTACTACTACTAATGTGGCACC 60.452 48.000 16.26 0.00 31.46 5.01
2550 2688 5.360144 CAGTACTACTACTAATGTGGCACCT 59.640 44.000 16.26 1.43 31.46 4.00
2551 2689 4.737855 ACTACTACTAATGTGGCACCTG 57.262 45.455 16.26 5.02 0.00 4.00
2552 2690 2.403252 ACTACTAATGTGGCACCTGC 57.597 50.000 16.26 0.00 41.14 4.85
2553 2691 1.909302 ACTACTAATGTGGCACCTGCT 59.091 47.619 16.26 0.00 41.70 4.24
2554 2692 2.093447 ACTACTAATGTGGCACCTGCTC 60.093 50.000 16.26 0.00 41.70 4.26
2555 2693 0.692476 ACTAATGTGGCACCTGCTCA 59.308 50.000 16.26 0.00 41.70 4.26
2556 2694 1.283029 ACTAATGTGGCACCTGCTCAT 59.717 47.619 16.26 0.00 41.70 2.90
2557 2695 1.945394 CTAATGTGGCACCTGCTCATC 59.055 52.381 16.26 0.00 41.70 2.92
2558 2696 1.028330 AATGTGGCACCTGCTCATCG 61.028 55.000 16.26 0.00 41.70 3.84
2559 2697 3.503363 GTGGCACCTGCTCATCGC 61.503 66.667 6.29 0.00 41.70 4.58
2583 2721 9.432077 CGCAAAATAATAATTTAAAATGGCACC 57.568 29.630 0.00 0.00 34.12 5.01
2587 2725 8.675705 AATAATAATTTAAAATGGCACCTGGC 57.324 30.769 0.00 0.00 43.74 4.85
2594 2732 2.845784 TGGCACCTGGCATCACTT 59.154 55.556 0.00 0.00 46.12 3.16
2595 2733 1.153524 TGGCACCTGGCATCACTTT 59.846 52.632 0.00 0.00 46.12 2.66
2596 2734 0.469705 TGGCACCTGGCATCACTTTT 60.470 50.000 0.00 0.00 46.12 2.27
2597 2735 2.702708 TGGCACCTGGCATCACTTTTG 61.703 52.381 0.00 0.00 46.12 2.44
2598 2736 0.961019 GCACCTGGCATCACTTTTGA 59.039 50.000 0.00 0.00 43.97 2.69
2599 2737 1.340889 GCACCTGGCATCACTTTTGAA 59.659 47.619 0.00 0.00 43.97 2.69
2600 2738 2.224018 GCACCTGGCATCACTTTTGAAA 60.224 45.455 0.00 0.00 43.97 2.69
2601 2739 3.383761 CACCTGGCATCACTTTTGAAAC 58.616 45.455 0.00 0.00 34.61 2.78
2602 2740 3.068590 CACCTGGCATCACTTTTGAAACT 59.931 43.478 0.00 0.00 34.61 2.66
2603 2741 3.319122 ACCTGGCATCACTTTTGAAACTC 59.681 43.478 0.00 0.00 34.61 3.01
2604 2742 3.305608 CCTGGCATCACTTTTGAAACTCC 60.306 47.826 0.00 0.00 34.61 3.85
2605 2743 3.565307 TGGCATCACTTTTGAAACTCCT 58.435 40.909 0.00 0.00 34.61 3.69
2606 2744 4.724399 TGGCATCACTTTTGAAACTCCTA 58.276 39.130 0.00 0.00 34.61 2.94
2607 2745 5.136828 TGGCATCACTTTTGAAACTCCTAA 58.863 37.500 0.00 0.00 34.61 2.69
2608 2746 5.774690 TGGCATCACTTTTGAAACTCCTAAT 59.225 36.000 0.00 0.00 34.61 1.73
2609 2747 6.071952 TGGCATCACTTTTGAAACTCCTAATC 60.072 38.462 0.00 0.00 34.61 1.75
2610 2748 6.071952 GGCATCACTTTTGAAACTCCTAATCA 60.072 38.462 0.00 0.00 34.61 2.57
2611 2749 7.363268 GGCATCACTTTTGAAACTCCTAATCAT 60.363 37.037 0.00 0.00 34.61 2.45
2612 2750 8.031277 GCATCACTTTTGAAACTCCTAATCATT 58.969 33.333 0.00 0.00 34.61 2.57
2613 2751 9.565213 CATCACTTTTGAAACTCCTAATCATTC 57.435 33.333 0.00 0.00 34.61 2.67
2614 2752 7.806690 TCACTTTTGAAACTCCTAATCATTCG 58.193 34.615 0.00 0.00 0.00 3.34
2615 2753 7.659799 TCACTTTTGAAACTCCTAATCATTCGA 59.340 33.333 0.00 0.00 0.00 3.71
2616 2754 8.289618 CACTTTTGAAACTCCTAATCATTCGAA 58.710 33.333 0.00 0.00 0.00 3.71
2617 2755 8.290325 ACTTTTGAAACTCCTAATCATTCGAAC 58.710 33.333 0.00 0.00 0.00 3.95
2618 2756 7.737972 TTTGAAACTCCTAATCATTCGAACA 57.262 32.000 0.00 0.00 0.00 3.18
2619 2757 6.721571 TGAAACTCCTAATCATTCGAACAC 57.278 37.500 0.00 0.00 0.00 3.32
2620 2758 6.464222 TGAAACTCCTAATCATTCGAACACT 58.536 36.000 0.00 0.00 0.00 3.55
2621 2759 6.934645 TGAAACTCCTAATCATTCGAACACTT 59.065 34.615 0.00 0.00 0.00 3.16
2622 2760 7.444183 TGAAACTCCTAATCATTCGAACACTTT 59.556 33.333 0.00 0.00 0.00 2.66
2623 2761 7.745620 AACTCCTAATCATTCGAACACTTTT 57.254 32.000 0.00 0.00 0.00 2.27
2624 2762 7.133891 ACTCCTAATCATTCGAACACTTTTG 57.866 36.000 0.00 0.00 0.00 2.44
2625 2763 6.149474 ACTCCTAATCATTCGAACACTTTTGG 59.851 38.462 0.00 3.34 0.00 3.28
2626 2764 6.234920 TCCTAATCATTCGAACACTTTTGGA 58.765 36.000 0.00 5.63 0.00 3.53
2627 2765 6.712998 TCCTAATCATTCGAACACTTTTGGAA 59.287 34.615 0.00 0.00 0.00 3.53
2628 2766 7.023575 CCTAATCATTCGAACACTTTTGGAAG 58.976 38.462 0.00 0.00 38.87 3.46
2629 2767 4.223320 TCATTCGAACACTTTTGGAAGC 57.777 40.909 0.00 0.00 36.29 3.86
2630 2768 2.748461 TTCGAACACTTTTGGAAGCG 57.252 45.000 0.00 0.00 36.29 4.68
2631 2769 1.942677 TCGAACACTTTTGGAAGCGA 58.057 45.000 0.00 0.00 36.29 4.93
2632 2770 2.281517 TCGAACACTTTTGGAAGCGAA 58.718 42.857 0.00 0.00 36.29 4.70
2633 2771 2.678836 TCGAACACTTTTGGAAGCGAAA 59.321 40.909 0.00 0.00 36.29 3.46
2634 2772 3.035942 CGAACACTTTTGGAAGCGAAAG 58.964 45.455 0.00 0.00 38.50 2.62
2635 2773 3.486875 CGAACACTTTTGGAAGCGAAAGT 60.487 43.478 0.00 0.00 44.50 2.66
2636 2774 4.421058 GAACACTTTTGGAAGCGAAAGTT 58.579 39.130 0.00 0.00 42.47 2.66
2637 2775 4.028852 ACACTTTTGGAAGCGAAAGTTC 57.971 40.909 0.00 0.00 42.47 3.01
2638 2776 3.442273 ACACTTTTGGAAGCGAAAGTTCA 59.558 39.130 0.00 0.00 42.47 3.18
2639 2777 4.082463 ACACTTTTGGAAGCGAAAGTTCAA 60.082 37.500 0.00 0.00 42.47 2.69
2640 2778 4.862018 CACTTTTGGAAGCGAAAGTTCAAA 59.138 37.500 0.00 0.00 42.47 2.69
2641 2779 5.519927 CACTTTTGGAAGCGAAAGTTCAAAT 59.480 36.000 0.00 0.00 42.47 2.32
2642 2780 5.748630 ACTTTTGGAAGCGAAAGTTCAAATC 59.251 36.000 0.00 0.00 41.86 2.17
2643 2781 5.514274 TTTGGAAGCGAAAGTTCAAATCT 57.486 34.783 0.00 0.00 0.00 2.40
2644 2782 4.488126 TGGAAGCGAAAGTTCAAATCTG 57.512 40.909 0.00 0.00 0.00 2.90
2645 2783 4.133820 TGGAAGCGAAAGTTCAAATCTGA 58.866 39.130 0.00 0.00 0.00 3.27
2646 2784 4.578516 TGGAAGCGAAAGTTCAAATCTGAA 59.421 37.500 0.00 0.00 39.30 3.02
2656 2794 2.699954 TCAAATCTGAACCCTTCGAGC 58.300 47.619 0.00 0.00 0.00 5.03
2657 2795 2.038426 TCAAATCTGAACCCTTCGAGCA 59.962 45.455 0.00 0.00 0.00 4.26
2658 2796 2.100605 AATCTGAACCCTTCGAGCAC 57.899 50.000 0.00 0.00 0.00 4.40
2720 2858 3.091545 CCAAACCACAAGCATCCAGTAT 58.908 45.455 0.00 0.00 0.00 2.12
2735 2873 2.330286 CAGTATAAACACACGCCACGA 58.670 47.619 0.00 0.00 0.00 4.35
2749 2889 2.125472 ACGACACCGCAACACACA 60.125 55.556 0.00 0.00 39.95 3.72
2777 2946 1.454104 CAACACCACCCCTAGCACA 59.546 57.895 0.00 0.00 0.00 4.57
2789 2958 3.179888 TAGCACAACGGCCCCGAAA 62.180 57.895 14.44 0.00 42.83 3.46
2790 2959 2.677765 TAGCACAACGGCCCCGAAAA 62.678 55.000 14.44 0.00 42.83 2.29
2820 2989 2.309528 ACATATGACGAACCATGCGT 57.690 45.000 10.38 0.00 45.79 5.24
2832 3001 4.015406 ATGCGTTCCGAGGTGGCA 62.015 61.111 6.88 6.88 37.80 4.92
3070 3248 3.338250 ACCATGGTGACCGGGCAT 61.338 61.111 16.47 0.00 0.00 4.40
3220 3406 2.113139 CACCTTTCACGCCCCTGT 59.887 61.111 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.037232 GTCAGAACAGGCTAAGCGGT 60.037 55.000 0.00 0.00 0.00 5.68
1 2 0.037326 TGTCAGAACAGGCTAAGCGG 60.037 55.000 0.00 0.00 0.00 5.52
3 4 2.079925 CCTTGTCAGAACAGGCTAAGC 58.920 52.381 0.00 0.00 36.57 3.09
4 5 3.409026 ACCTTGTCAGAACAGGCTAAG 57.591 47.619 0.00 0.00 36.57 2.18
6 7 2.703536 TGAACCTTGTCAGAACAGGCTA 59.296 45.455 0.00 0.00 36.57 3.93
7 8 1.490490 TGAACCTTGTCAGAACAGGCT 59.510 47.619 0.00 0.00 36.57 4.58
8 9 1.967319 TGAACCTTGTCAGAACAGGC 58.033 50.000 0.00 0.00 36.57 4.85
9 10 3.694072 TGTTTGAACCTTGTCAGAACAGG 59.306 43.478 0.00 0.00 36.57 4.00
10 11 4.963276 TGTTTGAACCTTGTCAGAACAG 57.037 40.909 0.00 0.00 36.57 3.16
11 12 6.039270 CCTTATGTTTGAACCTTGTCAGAACA 59.961 38.462 0.00 0.00 35.26 3.18
12 13 6.262273 TCCTTATGTTTGAACCTTGTCAGAAC 59.738 38.462 0.00 0.00 0.00 3.01
13 14 6.361433 TCCTTATGTTTGAACCTTGTCAGAA 58.639 36.000 0.00 0.00 0.00 3.02
14 15 5.935945 TCCTTATGTTTGAACCTTGTCAGA 58.064 37.500 0.00 0.00 0.00 3.27
15 16 5.182001 CCTCCTTATGTTTGAACCTTGTCAG 59.818 44.000 0.00 0.00 0.00 3.51
16 17 5.070001 CCTCCTTATGTTTGAACCTTGTCA 58.930 41.667 0.00 0.00 0.00 3.58
17 18 4.459337 CCCTCCTTATGTTTGAACCTTGTC 59.541 45.833 0.00 0.00 0.00 3.18
18 19 4.105697 TCCCTCCTTATGTTTGAACCTTGT 59.894 41.667 0.00 0.00 0.00 3.16
19 20 4.459337 GTCCCTCCTTATGTTTGAACCTTG 59.541 45.833 0.00 0.00 0.00 3.61
20 21 4.105697 TGTCCCTCCTTATGTTTGAACCTT 59.894 41.667 0.00 0.00 0.00 3.50
21 22 3.655777 TGTCCCTCCTTATGTTTGAACCT 59.344 43.478 0.00 0.00 0.00 3.50
22 23 4.028993 TGTCCCTCCTTATGTTTGAACC 57.971 45.455 0.00 0.00 0.00 3.62
23 24 4.082733 GCTTGTCCCTCCTTATGTTTGAAC 60.083 45.833 0.00 0.00 0.00 3.18
24 25 4.079253 GCTTGTCCCTCCTTATGTTTGAA 58.921 43.478 0.00 0.00 0.00 2.69
25 26 3.330701 AGCTTGTCCCTCCTTATGTTTGA 59.669 43.478 0.00 0.00 0.00 2.69
26 27 3.690460 AGCTTGTCCCTCCTTATGTTTG 58.310 45.455 0.00 0.00 0.00 2.93
27 28 3.330701 TGAGCTTGTCCCTCCTTATGTTT 59.669 43.478 0.00 0.00 0.00 2.83
28 29 2.912956 TGAGCTTGTCCCTCCTTATGTT 59.087 45.455 0.00 0.00 0.00 2.71
29 30 2.551270 TGAGCTTGTCCCTCCTTATGT 58.449 47.619 0.00 0.00 0.00 2.29
30 31 3.634397 TTGAGCTTGTCCCTCCTTATG 57.366 47.619 0.00 0.00 0.00 1.90
31 32 4.228210 TCAATTGAGCTTGTCCCTCCTTAT 59.772 41.667 3.38 0.00 0.00 1.73
32 33 3.587061 TCAATTGAGCTTGTCCCTCCTTA 59.413 43.478 3.38 0.00 0.00 2.69
33 34 2.376518 TCAATTGAGCTTGTCCCTCCTT 59.623 45.455 3.38 0.00 0.00 3.36
34 35 1.988107 TCAATTGAGCTTGTCCCTCCT 59.012 47.619 3.38 0.00 0.00 3.69
35 36 2.087646 GTCAATTGAGCTTGTCCCTCC 58.912 52.381 8.80 0.00 0.00 4.30
36 37 1.734465 CGTCAATTGAGCTTGTCCCTC 59.266 52.381 8.80 0.00 0.00 4.30
37 38 1.611673 CCGTCAATTGAGCTTGTCCCT 60.612 52.381 8.80 0.00 0.00 4.20
38 39 0.804989 CCGTCAATTGAGCTTGTCCC 59.195 55.000 8.80 0.00 0.00 4.46
39 40 0.804989 CCCGTCAATTGAGCTTGTCC 59.195 55.000 8.80 0.00 0.00 4.02
40 41 1.808411 TCCCGTCAATTGAGCTTGTC 58.192 50.000 8.80 0.00 0.00 3.18
41 42 2.270352 TTCCCGTCAATTGAGCTTGT 57.730 45.000 8.80 0.00 0.00 3.16
42 43 2.813754 TCTTTCCCGTCAATTGAGCTTG 59.186 45.455 8.80 0.00 0.00 4.01
43 44 3.140325 TCTTTCCCGTCAATTGAGCTT 57.860 42.857 8.80 0.00 0.00 3.74
44 45 2.814336 GTTCTTTCCCGTCAATTGAGCT 59.186 45.455 8.80 0.00 0.00 4.09
45 46 2.412847 CGTTCTTTCCCGTCAATTGAGC 60.413 50.000 8.80 3.29 0.00 4.26
46 47 3.064207 TCGTTCTTTCCCGTCAATTGAG 58.936 45.455 8.80 3.26 0.00 3.02
47 48 3.064207 CTCGTTCTTTCCCGTCAATTGA 58.936 45.455 3.38 3.38 0.00 2.57
48 49 2.159627 CCTCGTTCTTTCCCGTCAATTG 59.840 50.000 0.00 0.00 0.00 2.32
49 50 2.423577 CCTCGTTCTTTCCCGTCAATT 58.576 47.619 0.00 0.00 0.00 2.32
50 51 1.338769 CCCTCGTTCTTTCCCGTCAAT 60.339 52.381 0.00 0.00 0.00 2.57
51 52 0.034337 CCCTCGTTCTTTCCCGTCAA 59.966 55.000 0.00 0.00 0.00 3.18
52 53 1.117142 ACCCTCGTTCTTTCCCGTCA 61.117 55.000 0.00 0.00 0.00 4.35
53 54 0.669625 CACCCTCGTTCTTTCCCGTC 60.670 60.000 0.00 0.00 0.00 4.79
54 55 1.370064 CACCCTCGTTCTTTCCCGT 59.630 57.895 0.00 0.00 0.00 5.28
55 56 2.033194 GCACCCTCGTTCTTTCCCG 61.033 63.158 0.00 0.00 0.00 5.14
56 57 0.536460 TTGCACCCTCGTTCTTTCCC 60.536 55.000 0.00 0.00 0.00 3.97
57 58 1.266989 CTTTGCACCCTCGTTCTTTCC 59.733 52.381 0.00 0.00 0.00 3.13
58 59 2.218603 TCTTTGCACCCTCGTTCTTTC 58.781 47.619 0.00 0.00 0.00 2.62
59 60 2.341846 TCTTTGCACCCTCGTTCTTT 57.658 45.000 0.00 0.00 0.00 2.52
60 61 2.568623 ATCTTTGCACCCTCGTTCTT 57.431 45.000 0.00 0.00 0.00 2.52
61 62 3.914426 ATATCTTTGCACCCTCGTTCT 57.086 42.857 0.00 0.00 0.00 3.01
62 63 4.694339 ACTATATCTTTGCACCCTCGTTC 58.306 43.478 0.00 0.00 0.00 3.95
63 64 4.755266 ACTATATCTTTGCACCCTCGTT 57.245 40.909 0.00 0.00 0.00 3.85
64 65 6.492429 TGTATACTATATCTTTGCACCCTCGT 59.508 38.462 4.17 0.00 0.00 4.18
65 66 6.920817 TGTATACTATATCTTTGCACCCTCG 58.079 40.000 4.17 0.00 0.00 4.63
66 67 8.314751 ACATGTATACTATATCTTTGCACCCTC 58.685 37.037 0.00 0.00 0.00 4.30
67 68 8.207350 ACATGTATACTATATCTTTGCACCCT 57.793 34.615 0.00 0.00 0.00 4.34
68 69 8.721478 CAACATGTATACTATATCTTTGCACCC 58.279 37.037 0.00 0.00 0.00 4.61
69 70 9.489084 TCAACATGTATACTATATCTTTGCACC 57.511 33.333 0.00 0.00 0.00 5.01
81 82 9.826574 GTTTAGGTGGAATCAACATGTATACTA 57.173 33.333 0.00 0.00 31.71 1.82
82 83 7.773690 GGTTTAGGTGGAATCAACATGTATACT 59.226 37.037 0.00 0.00 31.71 2.12
83 84 7.773690 AGGTTTAGGTGGAATCAACATGTATAC 59.226 37.037 0.00 0.00 31.71 1.47
84 85 7.867921 AGGTTTAGGTGGAATCAACATGTATA 58.132 34.615 0.00 0.00 31.71 1.47
85 86 6.731467 AGGTTTAGGTGGAATCAACATGTAT 58.269 36.000 0.00 0.00 31.71 2.29
86 87 6.134535 AGGTTTAGGTGGAATCAACATGTA 57.865 37.500 0.00 0.00 31.71 2.29
87 88 4.998051 AGGTTTAGGTGGAATCAACATGT 58.002 39.130 0.00 0.00 31.71 3.21
88 89 5.982890 AAGGTTTAGGTGGAATCAACATG 57.017 39.130 0.00 0.00 31.71 3.21
89 90 5.480422 GGAAAGGTTTAGGTGGAATCAACAT 59.520 40.000 0.00 0.00 31.71 2.71
90 91 4.830600 GGAAAGGTTTAGGTGGAATCAACA 59.169 41.667 0.00 0.00 31.71 3.33
91 92 4.082949 CGGAAAGGTTTAGGTGGAATCAAC 60.083 45.833 0.00 0.00 0.00 3.18
92 93 4.076394 CGGAAAGGTTTAGGTGGAATCAA 58.924 43.478 0.00 0.00 0.00 2.57
93 94 3.328343 TCGGAAAGGTTTAGGTGGAATCA 59.672 43.478 0.00 0.00 0.00 2.57
94 95 3.946606 TCGGAAAGGTTTAGGTGGAATC 58.053 45.455 0.00 0.00 0.00 2.52
95 96 4.332828 CTTCGGAAAGGTTTAGGTGGAAT 58.667 43.478 0.00 0.00 0.00 3.01
96 97 3.746940 CTTCGGAAAGGTTTAGGTGGAA 58.253 45.455 0.00 0.00 0.00 3.53
97 98 2.551504 GCTTCGGAAAGGTTTAGGTGGA 60.552 50.000 0.00 0.00 32.79 4.02
98 99 1.810755 GCTTCGGAAAGGTTTAGGTGG 59.189 52.381 0.00 0.00 32.79 4.61
99 100 2.484264 CTGCTTCGGAAAGGTTTAGGTG 59.516 50.000 0.00 0.00 32.79 4.00
100 101 2.370849 TCTGCTTCGGAAAGGTTTAGGT 59.629 45.455 0.00 0.00 32.79 3.08
101 102 2.742589 GTCTGCTTCGGAAAGGTTTAGG 59.257 50.000 0.00 0.00 32.79 2.69
102 103 2.742589 GGTCTGCTTCGGAAAGGTTTAG 59.257 50.000 0.00 0.00 32.79 1.85
103 104 2.551504 GGGTCTGCTTCGGAAAGGTTTA 60.552 50.000 0.00 0.00 32.79 2.01
104 105 1.605753 GGTCTGCTTCGGAAAGGTTT 58.394 50.000 0.00 0.00 32.79 3.27
105 106 0.250770 GGGTCTGCTTCGGAAAGGTT 60.251 55.000 0.00 0.00 32.79 3.50
106 107 1.375326 GGGTCTGCTTCGGAAAGGT 59.625 57.895 0.00 0.00 32.79 3.50
107 108 1.377333 GGGGTCTGCTTCGGAAAGG 60.377 63.158 0.00 0.00 32.79 3.11
108 109 1.377333 GGGGGTCTGCTTCGGAAAG 60.377 63.158 0.00 0.00 35.47 2.62
109 110 1.838073 GAGGGGGTCTGCTTCGGAAA 61.838 60.000 0.00 0.00 0.00 3.13
110 111 2.203938 AGGGGGTCTGCTTCGGAA 60.204 61.111 0.00 0.00 0.00 4.30
111 112 2.683933 GAGGGGGTCTGCTTCGGA 60.684 66.667 0.00 0.00 0.00 4.55
112 113 0.976073 TAAGAGGGGGTCTGCTTCGG 60.976 60.000 0.00 0.00 34.84 4.30
113 114 0.902531 TTAAGAGGGGGTCTGCTTCG 59.097 55.000 0.00 0.00 34.84 3.79
114 115 3.712218 ACTATTAAGAGGGGGTCTGCTTC 59.288 47.826 1.59 0.00 34.84 3.86
115 116 3.737263 ACTATTAAGAGGGGGTCTGCTT 58.263 45.455 1.59 0.00 34.84 3.91
116 117 3.423058 ACTATTAAGAGGGGGTCTGCT 57.577 47.619 1.59 0.00 34.84 4.24
117 118 3.965347 TGTACTATTAAGAGGGGGTCTGC 59.035 47.826 1.59 0.00 34.84 4.26
118 119 6.099845 ACATTGTACTATTAAGAGGGGGTCTG 59.900 42.308 1.59 0.00 34.84 3.51
119 120 6.210522 ACATTGTACTATTAAGAGGGGGTCT 58.789 40.000 1.59 0.00 36.94 3.85
120 121 6.496144 ACATTGTACTATTAAGAGGGGGTC 57.504 41.667 1.59 0.00 0.00 4.46
121 122 6.126565 GGAACATTGTACTATTAAGAGGGGGT 60.127 42.308 1.59 0.00 0.00 4.95
122 123 6.101296 AGGAACATTGTACTATTAAGAGGGGG 59.899 42.308 1.59 0.00 0.00 5.40
123 124 7.138054 AGGAACATTGTACTATTAAGAGGGG 57.862 40.000 1.59 0.00 0.00 4.79
124 125 9.712305 CATAGGAACATTGTACTATTAAGAGGG 57.288 37.037 1.59 0.00 0.00 4.30
134 135 8.258708 GGAGTTTAGTCATAGGAACATTGTACT 58.741 37.037 0.00 0.00 0.00 2.73
135 136 7.222224 CGGAGTTTAGTCATAGGAACATTGTAC 59.778 40.741 0.00 0.00 0.00 2.90
136 137 7.262772 CGGAGTTTAGTCATAGGAACATTGTA 58.737 38.462 0.00 0.00 0.00 2.41
137 138 6.106673 CGGAGTTTAGTCATAGGAACATTGT 58.893 40.000 0.00 0.00 0.00 2.71
138 139 5.006746 GCGGAGTTTAGTCATAGGAACATTG 59.993 44.000 0.00 0.00 0.00 2.82
139 140 5.116882 GCGGAGTTTAGTCATAGGAACATT 58.883 41.667 0.00 0.00 0.00 2.71
140 141 4.443034 GGCGGAGTTTAGTCATAGGAACAT 60.443 45.833 0.00 0.00 0.00 2.71
141 142 3.118884 GGCGGAGTTTAGTCATAGGAACA 60.119 47.826 0.00 0.00 0.00 3.18
142 143 3.455327 GGCGGAGTTTAGTCATAGGAAC 58.545 50.000 0.00 0.00 0.00 3.62
143 144 2.100252 CGGCGGAGTTTAGTCATAGGAA 59.900 50.000 0.00 0.00 0.00 3.36
144 145 1.679680 CGGCGGAGTTTAGTCATAGGA 59.320 52.381 0.00 0.00 0.00 2.94
145 146 1.679680 TCGGCGGAGTTTAGTCATAGG 59.320 52.381 7.21 0.00 0.00 2.57
146 147 3.431922 TTCGGCGGAGTTTAGTCATAG 57.568 47.619 7.21 0.00 0.00 2.23
147 148 3.872511 TTTCGGCGGAGTTTAGTCATA 57.127 42.857 7.21 0.00 0.00 2.15
148 149 2.754946 TTTCGGCGGAGTTTAGTCAT 57.245 45.000 7.21 0.00 0.00 3.06
149 150 2.529780 TTTTCGGCGGAGTTTAGTCA 57.470 45.000 7.21 0.00 0.00 3.41
150 151 3.062042 TCTTTTTCGGCGGAGTTTAGTC 58.938 45.455 7.21 0.00 0.00 2.59
151 152 3.116079 TCTTTTTCGGCGGAGTTTAGT 57.884 42.857 7.21 0.00 0.00 2.24
152 153 4.216731 GTTTCTTTTTCGGCGGAGTTTAG 58.783 43.478 7.21 0.00 0.00 1.85
153 154 3.303263 CGTTTCTTTTTCGGCGGAGTTTA 60.303 43.478 7.21 0.00 0.00 2.01
154 155 2.540157 CGTTTCTTTTTCGGCGGAGTTT 60.540 45.455 7.21 0.00 0.00 2.66
155 156 1.003223 CGTTTCTTTTTCGGCGGAGTT 60.003 47.619 7.21 0.00 0.00 3.01
156 157 0.584876 CGTTTCTTTTTCGGCGGAGT 59.415 50.000 7.21 0.00 0.00 3.85
157 158 0.724785 GCGTTTCTTTTTCGGCGGAG 60.725 55.000 7.21 0.36 0.00 4.63
158 159 1.280444 GCGTTTCTTTTTCGGCGGA 59.720 52.632 7.21 0.00 0.00 5.54
159 160 0.592754 TTGCGTTTCTTTTTCGGCGG 60.593 50.000 7.21 0.00 0.00 6.13
160 161 0.770008 CTTGCGTTTCTTTTTCGGCG 59.230 50.000 0.00 0.00 0.00 6.46
161 162 2.113910 TCTTGCGTTTCTTTTTCGGC 57.886 45.000 0.00 0.00 0.00 5.54
162 163 4.324936 TGTTTTCTTGCGTTTCTTTTTCGG 59.675 37.500 0.00 0.00 0.00 4.30
163 164 5.237705 GTGTTTTCTTGCGTTTCTTTTTCG 58.762 37.500 0.00 0.00 0.00 3.46
164 165 5.547341 GGTGTTTTCTTGCGTTTCTTTTTC 58.453 37.500 0.00 0.00 0.00 2.29
165 166 4.090786 CGGTGTTTTCTTGCGTTTCTTTTT 59.909 37.500 0.00 0.00 0.00 1.94
166 167 3.610677 CGGTGTTTTCTTGCGTTTCTTTT 59.389 39.130 0.00 0.00 0.00 2.27
167 168 3.175929 CGGTGTTTTCTTGCGTTTCTTT 58.824 40.909 0.00 0.00 0.00 2.52
168 169 2.162809 ACGGTGTTTTCTTGCGTTTCTT 59.837 40.909 0.00 0.00 0.00 2.52
169 170 1.741145 ACGGTGTTTTCTTGCGTTTCT 59.259 42.857 0.00 0.00 0.00 2.52
170 171 2.106418 GACGGTGTTTTCTTGCGTTTC 58.894 47.619 0.00 0.00 0.00 2.78
171 172 1.741145 AGACGGTGTTTTCTTGCGTTT 59.259 42.857 0.00 0.00 0.00 3.60
172 173 1.375551 AGACGGTGTTTTCTTGCGTT 58.624 45.000 0.00 0.00 0.00 4.84
173 174 1.329599 GAAGACGGTGTTTTCTTGCGT 59.670 47.619 0.00 0.00 32.04 5.24
174 175 1.329292 TGAAGACGGTGTTTTCTTGCG 59.671 47.619 0.00 0.00 32.04 4.85
175 176 3.626028 ATGAAGACGGTGTTTTCTTGC 57.374 42.857 0.00 0.00 32.04 4.01
176 177 9.490663 GATATTTATGAAGACGGTGTTTTCTTG 57.509 33.333 0.00 0.00 32.04 3.02
177 178 8.674607 GGATATTTATGAAGACGGTGTTTTCTT 58.325 33.333 0.00 0.00 34.68 2.52
178 179 7.827236 TGGATATTTATGAAGACGGTGTTTTCT 59.173 33.333 0.00 0.00 29.66 2.52
179 180 7.981142 TGGATATTTATGAAGACGGTGTTTTC 58.019 34.615 0.00 0.00 0.00 2.29
180 181 7.827236 TCTGGATATTTATGAAGACGGTGTTTT 59.173 33.333 0.00 0.00 0.00 2.43
181 182 7.335627 TCTGGATATTTATGAAGACGGTGTTT 58.664 34.615 0.00 0.00 0.00 2.83
182 183 6.884832 TCTGGATATTTATGAAGACGGTGTT 58.115 36.000 0.00 0.00 0.00 3.32
183 184 6.463049 CCTCTGGATATTTATGAAGACGGTGT 60.463 42.308 0.00 0.00 0.00 4.16
184 185 5.928839 CCTCTGGATATTTATGAAGACGGTG 59.071 44.000 0.00 0.00 0.00 4.94
185 186 5.012148 CCCTCTGGATATTTATGAAGACGGT 59.988 44.000 0.00 0.00 0.00 4.83
186 187 5.482908 CCCTCTGGATATTTATGAAGACGG 58.517 45.833 0.00 0.00 0.00 4.79
187 188 5.012148 ACCCCTCTGGATATTTATGAAGACG 59.988 44.000 0.00 0.00 38.00 4.18
188 189 6.441088 ACCCCTCTGGATATTTATGAAGAC 57.559 41.667 0.00 0.00 38.00 3.01
189 190 6.619437 TGAACCCCTCTGGATATTTATGAAGA 59.381 38.462 0.00 0.00 38.00 2.87
190 191 6.841601 TGAACCCCTCTGGATATTTATGAAG 58.158 40.000 0.00 0.00 38.00 3.02
191 192 6.840090 TGAACCCCTCTGGATATTTATGAA 57.160 37.500 0.00 0.00 38.00 2.57
192 193 6.840090 TTGAACCCCTCTGGATATTTATGA 57.160 37.500 0.00 0.00 38.00 2.15
193 194 7.094634 CGATTTGAACCCCTCTGGATATTTATG 60.095 40.741 0.00 0.00 38.00 1.90
194 195 6.942576 CGATTTGAACCCCTCTGGATATTTAT 59.057 38.462 0.00 0.00 38.00 1.40
195 196 6.126594 ACGATTTGAACCCCTCTGGATATTTA 60.127 38.462 0.00 0.00 38.00 1.40
203 204 2.744202 CAAGACGATTTGAACCCCTCTG 59.256 50.000 0.00 0.00 0.00 3.35
207 208 1.068541 GCACAAGACGATTTGAACCCC 60.069 52.381 9.89 0.00 0.00 4.95
243 244 4.926860 TCGTGTGCATTGACTATTTCAG 57.073 40.909 0.00 0.00 34.94 3.02
251 252 2.029244 CGGACTAATCGTGTGCATTGAC 59.971 50.000 0.00 0.00 0.00 3.18
268 269 5.087964 ATTGAAGACAATGCTTTTGCGGAC 61.088 41.667 0.00 0.00 43.90 4.79
270 271 3.319755 ATTGAAGACAATGCTTTTGCGG 58.680 40.909 0.00 0.00 43.90 5.69
273 274 5.291178 TGGTGATTGAAGACAATGCTTTTG 58.709 37.500 0.00 0.00 45.30 2.44
304 305 7.234355 AGGTATTAGGGCATATTTCTTCCTTG 58.766 38.462 0.00 0.00 0.00 3.61
308 309 8.691661 TTGAAGGTATTAGGGCATATTTCTTC 57.308 34.615 0.00 0.00 0.00 2.87
312 313 7.523709 CGCATTTGAAGGTATTAGGGCATATTT 60.524 37.037 0.00 0.00 0.00 1.40
325 326 8.573035 AGAAGTAAAAATTCGCATTTGAAGGTA 58.427 29.630 0.00 0.00 32.57 3.08
357 358 7.470702 GCATCTCTAGCTGATACCTTGAAACTA 60.471 40.741 0.00 0.00 0.00 2.24
404 405 7.865706 AGACAGAAATAATTACTGCGGAATT 57.134 32.000 0.00 1.54 35.38 2.17
445 449 2.407696 GGTTCTTCGTCAGCTTTCGTAC 59.592 50.000 7.10 0.00 0.00 3.67
474 478 1.194772 GTCACTTCGCTACAGCAAACC 59.805 52.381 1.61 0.00 42.21 3.27
501 509 7.725818 ACTACAGTTTTACTCAGGCTTAAAC 57.274 36.000 0.00 0.00 0.00 2.01
561 573 2.239751 TTGTGTTTATGCACGCATCG 57.760 45.000 7.99 0.00 41.94 3.84
562 574 4.858692 AGATTTTGTGTTTATGCACGCATC 59.141 37.500 7.99 0.00 41.94 3.91
564 576 3.980134 CAGATTTTGTGTTTATGCACGCA 59.020 39.130 0.00 0.00 41.94 5.24
565 577 3.181541 GCAGATTTTGTGTTTATGCACGC 60.182 43.478 0.00 0.00 41.94 5.34
566 578 3.364621 GGCAGATTTTGTGTTTATGCACG 59.635 43.478 0.00 0.00 41.94 5.34
567 579 4.559153 AGGCAGATTTTGTGTTTATGCAC 58.441 39.130 0.00 0.00 39.65 4.57
568 580 4.870123 AGGCAGATTTTGTGTTTATGCA 57.130 36.364 0.00 0.00 33.94 3.96
981 999 2.361357 ACGGCACTAGCTCGGAGT 60.361 61.111 6.90 0.00 41.70 3.85
996 1014 3.315191 ACACAAAACCTTCTTCCATCACG 59.685 43.478 0.00 0.00 0.00 4.35
1059 1090 0.312416 CGATGATCTCCTGGTCCGTC 59.688 60.000 0.00 0.00 0.00 4.79
1189 1220 0.531753 ATGCCGTACGTATGCATGCA 60.532 50.000 25.04 25.04 43.66 3.96
1231 1262 8.534778 CAAAGAGATAGAAACAAAACTTTGCAC 58.465 33.333 0.00 0.00 41.79 4.57
1292 1323 2.481795 GGTCGGCAGCTAACGGTATTTA 60.482 50.000 9.04 0.00 0.00 1.40
1293 1324 1.648504 GTCGGCAGCTAACGGTATTT 58.351 50.000 9.04 0.00 0.00 1.40
1340 1375 5.043903 AGTCTTGTTCCGAACGATGATATG 58.956 41.667 6.78 0.00 0.00 1.78
1351 1386 1.686587 TCTCTTGCAGTCTTGTTCCGA 59.313 47.619 0.00 0.00 0.00 4.55
1362 1397 6.538021 AGCATTACAATACTTCTCTCTTGCAG 59.462 38.462 0.00 0.00 0.00 4.41
1363 1398 6.314648 CAGCATTACAATACTTCTCTCTTGCA 59.685 38.462 0.00 0.00 0.00 4.08
1364 1399 6.536582 TCAGCATTACAATACTTCTCTCTTGC 59.463 38.462 0.00 0.00 0.00 4.01
1399 1438 2.557317 TGTCAAACTTCCGTCCACTTC 58.443 47.619 0.00 0.00 0.00 3.01
1402 1441 3.982576 AATTGTCAAACTTCCGTCCAC 57.017 42.857 0.00 0.00 0.00 4.02
1407 1446 7.582319 GCACAAATTAAAATTGTCAAACTTCCG 59.418 33.333 6.95 0.00 38.90 4.30
1422 1461 2.730404 CTGCATGCACGCACAAATTAAA 59.270 40.909 18.46 0.00 36.86 1.52
1423 1462 2.030451 TCTGCATGCACGCACAAATTAA 60.030 40.909 18.46 0.00 36.86 1.40
1424 1463 1.538950 TCTGCATGCACGCACAAATTA 59.461 42.857 18.46 0.00 36.86 1.40
1425 1464 0.314618 TCTGCATGCACGCACAAATT 59.685 45.000 18.46 0.00 36.86 1.82
1426 1465 0.387622 GTCTGCATGCACGCACAAAT 60.388 50.000 18.46 0.00 36.86 2.32
1715 1758 2.741092 GAGTCGTGGGGCTTGTGA 59.259 61.111 0.00 0.00 0.00 3.58
1755 1859 3.957671 AGATTCATCGAGTTACGCGTA 57.042 42.857 16.41 16.41 42.26 4.42
1762 1866 3.179830 GTGTGCGTAGATTCATCGAGTT 58.820 45.455 0.00 0.00 0.00 3.01
1763 1867 2.163613 TGTGTGCGTAGATTCATCGAGT 59.836 45.455 0.00 0.00 0.00 4.18
1764 1868 2.531912 GTGTGTGCGTAGATTCATCGAG 59.468 50.000 0.00 0.00 0.00 4.04
1779 1883 1.643292 CGACAACCAGCTGTGTGTG 59.357 57.895 20.70 15.49 0.00 3.82
1780 1884 1.523711 CCGACAACCAGCTGTGTGT 60.524 57.895 14.16 15.64 0.00 3.72
1781 1885 1.498865 GACCGACAACCAGCTGTGTG 61.499 60.000 14.16 12.65 0.00 3.82
1783 1887 0.813610 TTGACCGACAACCAGCTGTG 60.814 55.000 13.81 7.93 33.18 3.66
1785 1889 4.454948 TTGACCGACAACCAGCTG 57.545 55.556 6.78 6.78 33.18 4.24
1818 1933 6.069905 TCCAGCTGTACCCAACATAAGAAATA 60.070 38.462 13.81 0.00 37.50 1.40
1819 1934 4.949856 CCAGCTGTACCCAACATAAGAAAT 59.050 41.667 13.81 0.00 37.50 2.17
1820 1935 4.042311 TCCAGCTGTACCCAACATAAGAAA 59.958 41.667 13.81 0.00 37.50 2.52
1822 1937 3.055385 GTCCAGCTGTACCCAACATAAGA 60.055 47.826 13.81 0.00 37.50 2.10
1823 1938 3.270877 GTCCAGCTGTACCCAACATAAG 58.729 50.000 13.81 0.00 37.50 1.73
1824 1939 2.354303 CGTCCAGCTGTACCCAACATAA 60.354 50.000 13.81 0.00 37.50 1.90
1835 1950 2.524394 ACCCAGTCGTCCAGCTGT 60.524 61.111 13.81 0.00 0.00 4.40
2117 2232 2.917227 TCCAGCACTGACGCCAGA 60.917 61.111 5.48 0.00 43.02 3.86
2126 2241 2.027377 CCTCTTGATGTTCTCCAGCACT 60.027 50.000 0.00 0.00 39.66 4.40
2336 2453 2.152016 CTACTCACACTGGTCGACTGA 58.848 52.381 16.46 9.78 0.00 3.41
2345 2462 2.809119 ACTCGTGACTCTACTCACACTG 59.191 50.000 0.00 0.00 40.67 3.66
2346 2463 3.128852 ACTCGTGACTCTACTCACACT 57.871 47.619 0.00 0.00 40.67 3.55
2347 2464 3.995705 AGTACTCGTGACTCTACTCACAC 59.004 47.826 0.00 0.00 40.67 3.82
2348 2465 4.244066 GAGTACTCGTGACTCTACTCACA 58.756 47.826 7.22 0.00 40.67 3.58
2349 2466 3.304026 CGAGTACTCGTGACTCTACTCAC 59.696 52.174 32.24 0.00 46.99 3.51
2350 2467 3.509740 CGAGTACTCGTGACTCTACTCA 58.490 50.000 32.24 0.00 46.99 3.41
2363 2480 0.745845 TCGTGGCTACCCGAGTACTC 60.746 60.000 13.18 13.18 0.00 2.59
2364 2481 1.028868 GTCGTGGCTACCCGAGTACT 61.029 60.000 0.00 0.00 33.10 2.73
2365 2482 1.028868 AGTCGTGGCTACCCGAGTAC 61.029 60.000 0.00 0.00 35.14 2.73
2366 2483 1.028330 CAGTCGTGGCTACCCGAGTA 61.028 60.000 0.00 0.00 35.14 2.59
2367 2484 2.035312 AGTCGTGGCTACCCGAGT 59.965 61.111 0.00 0.00 33.10 4.18
2368 2485 2.490217 CAGTCGTGGCTACCCGAG 59.510 66.667 0.00 0.00 33.10 4.63
2369 2486 3.066190 CCAGTCGTGGCTACCCGA 61.066 66.667 0.00 0.00 36.89 5.14
2370 2487 4.143333 CCCAGTCGTGGCTACCCG 62.143 72.222 0.00 0.00 43.44 5.28
2371 2488 3.782443 CCCCAGTCGTGGCTACCC 61.782 72.222 0.00 0.00 43.44 3.69
2383 2500 5.468540 TCGATGACAGTTTATATCCCCAG 57.531 43.478 0.00 0.00 0.00 4.45
2393 2528 7.393234 TGGAGGAAATAAAATCGATGACAGTTT 59.607 33.333 0.00 0.00 0.00 2.66
2400 2535 6.683974 AGTGTGGAGGAAATAAAATCGATG 57.316 37.500 0.00 0.00 0.00 3.84
2426 2561 9.918630 CACTGATTGAGAAATTAATTTGTTCCT 57.081 29.630 17.98 8.64 0.00 3.36
2427 2562 8.650714 GCACTGATTGAGAAATTAATTTGTTCC 58.349 33.333 17.98 3.92 0.00 3.62
2434 2569 6.770746 AGCTGCACTGATTGAGAAATTAAT 57.229 33.333 1.02 0.00 0.00 1.40
2445 2583 2.786777 TCACATGAAGCTGCACTGATT 58.213 42.857 0.00 0.00 0.00 2.57
2463 2601 2.416027 GCTAGAGATGCGTGACTGTTCA 60.416 50.000 0.00 0.00 0.00 3.18
2464 2602 2.189342 GCTAGAGATGCGTGACTGTTC 58.811 52.381 0.00 0.00 0.00 3.18
2465 2603 1.546029 TGCTAGAGATGCGTGACTGTT 59.454 47.619 0.00 0.00 0.00 3.16
2467 2605 2.284263 TTGCTAGAGATGCGTGACTG 57.716 50.000 0.00 0.00 0.00 3.51
2468 2606 3.533606 ATTTGCTAGAGATGCGTGACT 57.466 42.857 0.00 0.00 0.00 3.41
2469 2607 4.387256 GGATATTTGCTAGAGATGCGTGAC 59.613 45.833 0.00 0.00 0.00 3.67
2470 2608 4.281941 AGGATATTTGCTAGAGATGCGTGA 59.718 41.667 0.00 0.00 0.00 4.35
2471 2609 4.564041 AGGATATTTGCTAGAGATGCGTG 58.436 43.478 0.00 0.00 0.00 5.34
2472 2610 4.881019 AGGATATTTGCTAGAGATGCGT 57.119 40.909 0.00 0.00 0.00 5.24
2473 2611 5.804473 CAGTAGGATATTTGCTAGAGATGCG 59.196 44.000 0.00 0.00 0.00 4.73
2474 2612 6.105333 CCAGTAGGATATTTGCTAGAGATGC 58.895 44.000 0.00 0.00 36.89 3.91
2475 2613 7.039434 TGACCAGTAGGATATTTGCTAGAGATG 60.039 40.741 0.00 0.00 38.69 2.90
2476 2614 7.013220 TGACCAGTAGGATATTTGCTAGAGAT 58.987 38.462 0.00 0.00 38.69 2.75
2477 2615 6.265649 GTGACCAGTAGGATATTTGCTAGAGA 59.734 42.308 0.00 0.00 38.69 3.10
2478 2616 6.040955 TGTGACCAGTAGGATATTTGCTAGAG 59.959 42.308 0.00 0.00 38.69 2.43
2479 2617 5.897250 TGTGACCAGTAGGATATTTGCTAGA 59.103 40.000 0.00 0.00 38.69 2.43
2480 2618 5.986135 GTGTGACCAGTAGGATATTTGCTAG 59.014 44.000 0.00 0.00 38.69 3.42
2481 2619 5.163343 GGTGTGACCAGTAGGATATTTGCTA 60.163 44.000 0.00 0.00 38.42 3.49
2482 2620 4.384208 GGTGTGACCAGTAGGATATTTGCT 60.384 45.833 0.00 0.00 38.42 3.91
2483 2621 3.877508 GGTGTGACCAGTAGGATATTTGC 59.122 47.826 0.00 0.00 38.42 3.68
2484 2622 5.104941 TGAGGTGTGACCAGTAGGATATTTG 60.105 44.000 0.00 0.00 41.95 2.32
2485 2623 5.030147 TGAGGTGTGACCAGTAGGATATTT 58.970 41.667 0.00 0.00 41.95 1.40
2486 2624 4.620723 TGAGGTGTGACCAGTAGGATATT 58.379 43.478 0.00 0.00 41.95 1.28
2487 2625 4.265856 TGAGGTGTGACCAGTAGGATAT 57.734 45.455 0.00 0.00 41.95 1.63
2488 2626 3.750501 TGAGGTGTGACCAGTAGGATA 57.249 47.619 0.00 0.00 41.95 2.59
2489 2627 2.623418 TGAGGTGTGACCAGTAGGAT 57.377 50.000 0.00 0.00 41.95 3.24
2490 2628 2.623418 ATGAGGTGTGACCAGTAGGA 57.377 50.000 0.00 0.00 41.95 2.94
2491 2629 3.769844 AGTTATGAGGTGTGACCAGTAGG 59.230 47.826 0.00 0.00 41.95 3.18
2492 2630 4.462834 TGAGTTATGAGGTGTGACCAGTAG 59.537 45.833 0.00 0.00 41.95 2.57
2493 2631 4.412843 TGAGTTATGAGGTGTGACCAGTA 58.587 43.478 0.00 0.00 41.95 2.74
2494 2632 3.239449 TGAGTTATGAGGTGTGACCAGT 58.761 45.455 0.00 0.00 41.95 4.00
2495 2633 3.961480 TGAGTTATGAGGTGTGACCAG 57.039 47.619 0.00 0.00 41.95 4.00
2496 2634 5.163311 CCATATGAGTTATGAGGTGTGACCA 60.163 44.000 3.65 0.00 40.22 4.02
2497 2635 5.300752 CCATATGAGTTATGAGGTGTGACC 58.699 45.833 3.65 0.00 40.22 4.02
2498 2636 4.752101 GCCATATGAGTTATGAGGTGTGAC 59.248 45.833 3.65 0.00 40.22 3.67
2499 2637 4.655649 AGCCATATGAGTTATGAGGTGTGA 59.344 41.667 3.65 0.00 40.22 3.58
2500 2638 4.965814 AGCCATATGAGTTATGAGGTGTG 58.034 43.478 3.65 0.00 40.22 3.82
2501 2639 6.070538 GGATAGCCATATGAGTTATGAGGTGT 60.071 42.308 3.65 0.00 40.22 4.16
2502 2640 6.070596 TGGATAGCCATATGAGTTATGAGGTG 60.071 42.308 3.65 0.00 40.22 4.00
2503 2641 6.025539 TGGATAGCCATATGAGTTATGAGGT 58.974 40.000 3.65 0.00 40.22 3.85
2504 2642 6.155910 ACTGGATAGCCATATGAGTTATGAGG 59.844 42.308 0.00 0.00 44.91 3.86
2505 2643 7.180322 ACTGGATAGCCATATGAGTTATGAG 57.820 40.000 0.00 4.05 44.91 2.90
2506 2644 7.895962 AGTACTGGATAGCCATATGAGTTATGA 59.104 37.037 0.00 0.00 44.91 2.15
2507 2645 8.072321 AGTACTGGATAGCCATATGAGTTATG 57.928 38.462 0.00 0.00 44.91 1.90
2508 2646 9.191479 GTAGTACTGGATAGCCATATGAGTTAT 57.809 37.037 5.39 2.56 44.91 1.89
2509 2647 8.391699 AGTAGTACTGGATAGCCATATGAGTTA 58.608 37.037 5.39 0.00 44.91 2.24
2510 2648 7.242359 AGTAGTACTGGATAGCCATATGAGTT 58.758 38.462 5.39 0.00 44.91 3.01
2511 2649 6.795590 AGTAGTACTGGATAGCCATATGAGT 58.204 40.000 5.39 0.00 44.91 3.41
2512 2650 8.050325 AGTAGTAGTACTGGATAGCCATATGAG 58.950 40.741 13.29 0.00 44.91 2.90
2513 2651 7.929959 AGTAGTAGTACTGGATAGCCATATGA 58.070 38.462 13.29 0.00 44.91 2.15
2514 2652 9.682465 TTAGTAGTAGTACTGGATAGCCATATG 57.318 37.037 18.75 0.00 44.91 1.78
2516 2654 9.682465 CATTAGTAGTAGTACTGGATAGCCATA 57.318 37.037 18.75 0.00 44.91 2.74
2517 2655 8.171400 ACATTAGTAGTAGTACTGGATAGCCAT 58.829 37.037 18.75 0.00 44.91 4.40
2518 2656 7.447545 CACATTAGTAGTAGTACTGGATAGCCA 59.552 40.741 18.75 0.00 39.96 4.75
2519 2657 7.094291 CCACATTAGTAGTAGTACTGGATAGCC 60.094 44.444 18.75 0.00 39.96 3.93
2520 2658 7.575343 GCCACATTAGTAGTAGTACTGGATAGC 60.575 44.444 18.75 11.14 39.96 2.97
2521 2659 7.447545 TGCCACATTAGTAGTAGTACTGGATAG 59.552 40.741 18.75 7.84 39.96 2.08
2522 2660 7.230108 GTGCCACATTAGTAGTAGTACTGGATA 59.770 40.741 18.75 3.93 39.96 2.59
2523 2661 6.040616 GTGCCACATTAGTAGTAGTACTGGAT 59.959 42.308 18.75 10.50 39.96 3.41
2524 2662 5.359009 GTGCCACATTAGTAGTAGTACTGGA 59.641 44.000 18.75 8.82 39.96 3.86
2525 2663 5.451520 GGTGCCACATTAGTAGTAGTACTGG 60.452 48.000 18.75 12.98 39.96 4.00
2526 2664 5.360144 AGGTGCCACATTAGTAGTAGTACTG 59.640 44.000 18.75 7.12 39.96 2.74
2527 2665 5.360144 CAGGTGCCACATTAGTAGTAGTACT 59.640 44.000 14.57 14.57 42.49 2.73
2528 2666 5.589192 CAGGTGCCACATTAGTAGTAGTAC 58.411 45.833 0.00 0.00 0.00 2.73
2529 2667 4.098960 GCAGGTGCCACATTAGTAGTAGTA 59.901 45.833 0.00 0.00 34.31 1.82
2530 2668 3.118738 GCAGGTGCCACATTAGTAGTAGT 60.119 47.826 0.00 0.00 34.31 2.73
2531 2669 3.133003 AGCAGGTGCCACATTAGTAGTAG 59.867 47.826 0.00 0.00 43.38 2.57
2532 2670 3.104512 AGCAGGTGCCACATTAGTAGTA 58.895 45.455 0.00 0.00 43.38 1.82
2533 2671 1.909302 AGCAGGTGCCACATTAGTAGT 59.091 47.619 0.00 0.00 43.38 2.73
2534 2672 2.093500 TGAGCAGGTGCCACATTAGTAG 60.093 50.000 0.00 0.00 43.38 2.57
2535 2673 1.905894 TGAGCAGGTGCCACATTAGTA 59.094 47.619 0.00 0.00 43.38 1.82
2536 2674 0.692476 TGAGCAGGTGCCACATTAGT 59.308 50.000 0.00 0.00 43.38 2.24
2537 2675 1.945394 GATGAGCAGGTGCCACATTAG 59.055 52.381 11.67 0.00 43.38 1.73
2538 2676 1.743431 CGATGAGCAGGTGCCACATTA 60.743 52.381 11.67 0.00 43.38 1.90
2539 2677 1.028330 CGATGAGCAGGTGCCACATT 61.028 55.000 11.67 0.00 43.38 2.71
2540 2678 1.450848 CGATGAGCAGGTGCCACAT 60.451 57.895 10.62 10.62 43.38 3.21
2541 2679 2.046988 CGATGAGCAGGTGCCACA 60.047 61.111 0.00 0.15 43.38 4.17
2557 2695 9.432077 GGTGCCATTTTAAATTATTATTTTGCG 57.568 29.630 0.00 0.00 35.61 4.85
2561 2699 9.119418 GCCAGGTGCCATTTTAAATTATTATTT 57.881 29.630 0.00 0.00 37.68 1.40
2562 2700 8.270744 TGCCAGGTGCCATTTTAAATTATTATT 58.729 29.630 0.00 0.00 40.16 1.40
2563 2701 7.800092 TGCCAGGTGCCATTTTAAATTATTAT 58.200 30.769 0.00 0.00 40.16 1.28
2564 2702 7.187824 TGCCAGGTGCCATTTTAAATTATTA 57.812 32.000 0.00 0.00 40.16 0.98
2565 2703 6.059787 TGCCAGGTGCCATTTTAAATTATT 57.940 33.333 0.00 0.00 40.16 1.40
2566 2704 5.690464 TGCCAGGTGCCATTTTAAATTAT 57.310 34.783 0.00 0.00 40.16 1.28
2567 2705 5.188555 TGATGCCAGGTGCCATTTTAAATTA 59.811 36.000 0.00 0.00 40.16 1.40
2568 2706 4.019501 TGATGCCAGGTGCCATTTTAAATT 60.020 37.500 0.00 0.00 40.16 1.82
2569 2707 3.518705 TGATGCCAGGTGCCATTTTAAAT 59.481 39.130 0.00 0.00 40.16 1.40
2570 2708 2.902486 TGATGCCAGGTGCCATTTTAAA 59.098 40.909 0.00 0.00 40.16 1.52
2571 2709 2.233431 GTGATGCCAGGTGCCATTTTAA 59.767 45.455 0.00 0.00 40.16 1.52
2572 2710 1.824230 GTGATGCCAGGTGCCATTTTA 59.176 47.619 0.00 0.00 40.16 1.52
2573 2711 0.609662 GTGATGCCAGGTGCCATTTT 59.390 50.000 0.00 0.00 40.16 1.82
2574 2712 0.251922 AGTGATGCCAGGTGCCATTT 60.252 50.000 0.00 0.00 40.16 2.32
2575 2713 0.251922 AAGTGATGCCAGGTGCCATT 60.252 50.000 0.00 0.00 40.16 3.16
2576 2714 0.251922 AAAGTGATGCCAGGTGCCAT 60.252 50.000 0.00 0.00 40.16 4.40
2577 2715 0.469705 AAAAGTGATGCCAGGTGCCA 60.470 50.000 0.00 0.00 40.16 4.92
2578 2716 0.037975 CAAAAGTGATGCCAGGTGCC 60.038 55.000 0.00 0.00 40.16 5.01
2579 2717 0.961019 TCAAAAGTGATGCCAGGTGC 59.039 50.000 0.00 0.00 41.77 5.01
2580 2718 3.068590 AGTTTCAAAAGTGATGCCAGGTG 59.931 43.478 0.00 0.00 32.48 4.00
2581 2719 3.299503 AGTTTCAAAAGTGATGCCAGGT 58.700 40.909 0.00 0.00 32.48 4.00
2582 2720 3.305608 GGAGTTTCAAAAGTGATGCCAGG 60.306 47.826 0.00 0.00 32.48 4.45
2583 2721 3.571401 AGGAGTTTCAAAAGTGATGCCAG 59.429 43.478 0.00 0.00 32.48 4.85
2584 2722 3.565307 AGGAGTTTCAAAAGTGATGCCA 58.435 40.909 0.00 0.00 32.48 4.92
2585 2723 5.705609 TTAGGAGTTTCAAAAGTGATGCC 57.294 39.130 0.00 0.00 32.48 4.40
2586 2724 6.913170 TGATTAGGAGTTTCAAAAGTGATGC 58.087 36.000 0.00 0.00 32.48 3.91
2587 2725 9.565213 GAATGATTAGGAGTTTCAAAAGTGATG 57.435 33.333 0.00 0.00 32.48 3.07
2588 2726 8.454106 CGAATGATTAGGAGTTTCAAAAGTGAT 58.546 33.333 0.00 0.00 32.48 3.06
2589 2727 7.659799 TCGAATGATTAGGAGTTTCAAAAGTGA 59.340 33.333 0.00 0.00 0.00 3.41
2590 2728 7.806690 TCGAATGATTAGGAGTTTCAAAAGTG 58.193 34.615 0.00 0.00 0.00 3.16
2591 2729 7.979444 TCGAATGATTAGGAGTTTCAAAAGT 57.021 32.000 0.00 0.00 0.00 2.66
2592 2730 8.289618 TGTTCGAATGATTAGGAGTTTCAAAAG 58.710 33.333 0.00 0.00 0.00 2.27
2593 2731 8.073768 GTGTTCGAATGATTAGGAGTTTCAAAA 58.926 33.333 0.00 0.00 0.00 2.44
2594 2732 7.444183 AGTGTTCGAATGATTAGGAGTTTCAAA 59.556 33.333 0.00 0.00 0.00 2.69
2595 2733 6.934645 AGTGTTCGAATGATTAGGAGTTTCAA 59.065 34.615 0.00 0.00 0.00 2.69
2596 2734 6.464222 AGTGTTCGAATGATTAGGAGTTTCA 58.536 36.000 0.00 0.00 0.00 2.69
2597 2735 6.969828 AGTGTTCGAATGATTAGGAGTTTC 57.030 37.500 0.00 0.00 0.00 2.78
2598 2736 7.745620 AAAGTGTTCGAATGATTAGGAGTTT 57.254 32.000 0.00 0.00 0.00 2.66
2599 2737 7.308589 CCAAAAGTGTTCGAATGATTAGGAGTT 60.309 37.037 0.00 0.00 0.00 3.01
2600 2738 6.149474 CCAAAAGTGTTCGAATGATTAGGAGT 59.851 38.462 0.00 0.00 0.00 3.85
2601 2739 6.371548 TCCAAAAGTGTTCGAATGATTAGGAG 59.628 38.462 0.00 0.00 0.00 3.69
2602 2740 6.234920 TCCAAAAGTGTTCGAATGATTAGGA 58.765 36.000 0.00 1.63 0.00 2.94
2603 2741 6.494893 TCCAAAAGTGTTCGAATGATTAGG 57.505 37.500 0.00 0.00 0.00 2.69
2604 2742 6.524586 GCTTCCAAAAGTGTTCGAATGATTAG 59.475 38.462 0.00 0.00 34.79 1.73
2605 2743 6.378582 GCTTCCAAAAGTGTTCGAATGATTA 58.621 36.000 0.00 0.00 34.79 1.75
2606 2744 5.222631 GCTTCCAAAAGTGTTCGAATGATT 58.777 37.500 0.00 0.00 34.79 2.57
2607 2745 4.613622 CGCTTCCAAAAGTGTTCGAATGAT 60.614 41.667 0.00 0.00 38.05 2.45
2608 2746 3.303725 CGCTTCCAAAAGTGTTCGAATGA 60.304 43.478 0.00 0.00 38.05 2.57
2609 2747 2.973224 CGCTTCCAAAAGTGTTCGAATG 59.027 45.455 0.00 0.00 38.05 2.67
2610 2748 2.875933 TCGCTTCCAAAAGTGTTCGAAT 59.124 40.909 0.00 0.00 42.46 3.34
2611 2749 2.281517 TCGCTTCCAAAAGTGTTCGAA 58.718 42.857 0.00 0.00 42.46 3.71
2612 2750 1.942677 TCGCTTCCAAAAGTGTTCGA 58.057 45.000 0.00 0.00 42.46 3.71
2613 2751 2.748461 TTCGCTTCCAAAAGTGTTCG 57.252 45.000 0.00 0.00 42.46 3.95
2614 2752 4.028852 ACTTTCGCTTCCAAAAGTGTTC 57.971 40.909 0.05 0.00 42.52 3.18
2615 2753 4.082463 TGAACTTTCGCTTCCAAAAGTGTT 60.082 37.500 1.62 0.00 43.14 3.32
2616 2754 3.442273 TGAACTTTCGCTTCCAAAAGTGT 59.558 39.130 1.62 0.00 43.14 3.55
2617 2755 4.027572 TGAACTTTCGCTTCCAAAAGTG 57.972 40.909 1.62 0.00 43.14 3.16
2618 2756 4.712122 TTGAACTTTCGCTTCCAAAAGT 57.288 36.364 0.00 0.00 45.21 2.66
2619 2757 5.979517 AGATTTGAACTTTCGCTTCCAAAAG 59.020 36.000 0.00 0.00 38.24 2.27
2620 2758 5.748152 CAGATTTGAACTTTCGCTTCCAAAA 59.252 36.000 0.00 0.00 0.00 2.44
2621 2759 5.067153 TCAGATTTGAACTTTCGCTTCCAAA 59.933 36.000 0.00 0.00 0.00 3.28
2622 2760 4.578516 TCAGATTTGAACTTTCGCTTCCAA 59.421 37.500 0.00 0.00 0.00 3.53
2623 2761 4.133820 TCAGATTTGAACTTTCGCTTCCA 58.866 39.130 0.00 0.00 0.00 3.53
2624 2762 4.749245 TCAGATTTGAACTTTCGCTTCC 57.251 40.909 0.00 0.00 0.00 3.46
2635 2773 3.074412 GCTCGAAGGGTTCAGATTTGAA 58.926 45.455 0.00 0.00 40.92 2.69
2636 2774 2.038426 TGCTCGAAGGGTTCAGATTTGA 59.962 45.455 0.00 0.00 0.00 2.69
2637 2775 2.160417 GTGCTCGAAGGGTTCAGATTTG 59.840 50.000 0.00 0.00 0.00 2.32
2638 2776 2.039084 AGTGCTCGAAGGGTTCAGATTT 59.961 45.455 0.00 0.00 0.00 2.17
2639 2777 1.625818 AGTGCTCGAAGGGTTCAGATT 59.374 47.619 0.00 0.00 0.00 2.40
2640 2778 1.270907 AGTGCTCGAAGGGTTCAGAT 58.729 50.000 0.00 0.00 0.00 2.90
2641 2779 1.048601 AAGTGCTCGAAGGGTTCAGA 58.951 50.000 0.00 0.00 0.00 3.27
2642 2780 2.338500 GTAAGTGCTCGAAGGGTTCAG 58.662 52.381 0.00 0.00 0.00 3.02
2643 2781 1.001633 GGTAAGTGCTCGAAGGGTTCA 59.998 52.381 0.00 0.00 0.00 3.18
2644 2782 1.723220 GGTAAGTGCTCGAAGGGTTC 58.277 55.000 0.00 0.00 0.00 3.62
2645 2783 0.037605 CGGTAAGTGCTCGAAGGGTT 60.038 55.000 0.00 0.00 0.00 4.11
2646 2784 0.896940 TCGGTAAGTGCTCGAAGGGT 60.897 55.000 0.00 0.00 0.00 4.34
2647 2785 0.245539 TTCGGTAAGTGCTCGAAGGG 59.754 55.000 0.00 0.00 37.88 3.95
2648 2786 2.074547 TTTCGGTAAGTGCTCGAAGG 57.925 50.000 0.00 0.00 42.55 3.46
2649 2787 3.120649 CCTTTTTCGGTAAGTGCTCGAAG 60.121 47.826 0.00 0.00 42.55 3.79
2650 2788 2.803956 CCTTTTTCGGTAAGTGCTCGAA 59.196 45.455 0.00 0.00 40.47 3.71
2651 2789 2.409975 CCTTTTTCGGTAAGTGCTCGA 58.590 47.619 0.00 0.00 0.00 4.04
2652 2790 1.136057 GCCTTTTTCGGTAAGTGCTCG 60.136 52.381 0.00 0.00 0.00 5.03
2653 2791 2.152016 AGCCTTTTTCGGTAAGTGCTC 58.848 47.619 0.00 0.00 29.18 4.26
2654 2792 2.271944 AGCCTTTTTCGGTAAGTGCT 57.728 45.000 0.00 0.00 0.00 4.40
2655 2793 3.305964 GAAAGCCTTTTTCGGTAAGTGC 58.694 45.455 0.00 0.00 0.00 4.40
2656 2794 3.551551 CGAAAGCCTTTTTCGGTAAGTG 58.448 45.455 12.72 0.00 45.17 3.16
2657 2795 3.891056 CGAAAGCCTTTTTCGGTAAGT 57.109 42.857 12.72 0.00 45.17 2.24
2720 2858 1.152989 GGTGTCGTGGCGTGTGTTTA 61.153 55.000 0.00 0.00 0.00 2.01
2735 2873 2.745785 CGTGTGTGTGTTGCGGTGT 61.746 57.895 0.00 0.00 0.00 4.16
2777 2946 2.196502 ACCTTTTTCGGGGCCGTT 59.803 55.556 0.00 0.00 40.74 4.44
2789 2958 6.331061 GTTCGTCATATGTAGTCTCACCTTT 58.669 40.000 1.90 0.00 0.00 3.11
2790 2959 5.163540 GGTTCGTCATATGTAGTCTCACCTT 60.164 44.000 1.90 0.00 0.00 3.50
2832 3001 4.459685 CGATATCGTATCCTTCCTGAAGGT 59.540 45.833 22.03 13.59 44.88 3.50
2866 3035 1.301009 GATCCTTGGATCGGGCGAC 60.301 63.158 13.16 0.00 0.00 5.19
3070 3248 4.329545 GAGCCCGTGCCTTGGTGA 62.330 66.667 0.00 0.00 38.69 4.02
3175 3361 0.386858 CCGCTCGTCTCTTTCGTTGA 60.387 55.000 0.00 0.00 0.00 3.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.