Multiple sequence alignment - TraesCS3B01G193700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G193700 chr3B 100.000 3557 0 0 1 3557 213722427 213725983 0.000000e+00 6569
1 TraesCS3B01G193700 chr3B 81.064 639 97 11 3 619 738390179 738389543 4.130000e-134 488
2 TraesCS3B01G193700 chr3D 93.133 1762 68 18 676 2405 148252981 148251241 0.000000e+00 2534
3 TraesCS3B01G193700 chr3D 89.624 771 50 12 2402 3158 148250985 148250231 0.000000e+00 953
4 TraesCS3B01G193700 chr3D 83.670 594 81 10 10 591 415995094 415994505 2.410000e-151 545
5 TraesCS3B01G193700 chr3D 95.324 278 8 4 3247 3524 148250051 148249779 1.520000e-118 436
6 TraesCS3B01G193700 chr3A 93.845 1576 56 11 676 2240 164928585 164930130 0.000000e+00 2335
7 TraesCS3B01G193700 chr3A 90.923 650 43 7 2391 3036 164932034 164932671 0.000000e+00 859
8 TraesCS3B01G193700 chr3A 90.196 408 14 10 3163 3556 164932675 164933070 3.170000e-140 508
9 TraesCS3B01G193700 chr3A 95.139 144 7 0 2246 2389 164931630 164931773 9.930000e-56 228
10 TraesCS3B01G193700 chr5B 86.508 630 76 7 3 629 595222440 595223063 0.000000e+00 684
11 TraesCS3B01G193700 chr2D 85.460 619 77 10 3 619 44489810 44489203 1.800000e-177 632
12 TraesCS3B01G193700 chr5D 83.920 653 75 17 3 632 46687206 46687851 6.570000e-167 597
13 TraesCS3B01G193700 chr5D 85.978 542 64 8 3 536 508214952 508214415 1.430000e-158 569
14 TraesCS3B01G193700 chr5D 89.009 464 40 6 3 458 517094928 517094468 6.670000e-157 564
15 TraesCS3B01G193700 chr7B 84.279 617 87 7 3 617 122728635 122728027 8.500000e-166 593
16 TraesCS3B01G193700 chr7B 81.123 641 96 23 3 632 731948815 731948189 1.150000e-134 490
17 TraesCS3B01G193700 chr7D 83.538 650 80 11 3 629 411325773 411326418 1.840000e-162 582
18 TraesCS3B01G193700 chr7A 83.065 620 92 9 3 619 729051796 729052405 5.190000e-153 551
19 TraesCS3B01G193700 chrUn 80.997 642 97 23 3 632 160368301 160367673 1.480000e-133 486
20 TraesCS3B01G193700 chrUn 84.450 418 49 14 3 413 160370399 160369991 7.160000e-107 398
21 TraesCS3B01G193700 chrUn 84.450 418 49 14 3 413 304007597 304008005 7.160000e-107 398
22 TraesCS3B01G193700 chr1B 86.897 145 13 2 3 141 425354028 425353884 1.320000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G193700 chr3B 213722427 213725983 3556 False 6569.000000 6569 100.000000 1 3557 1 chr3B.!!$F1 3556
1 TraesCS3B01G193700 chr3B 738389543 738390179 636 True 488.000000 488 81.064000 3 619 1 chr3B.!!$R1 616
2 TraesCS3B01G193700 chr3D 148249779 148252981 3202 True 1307.666667 2534 92.693667 676 3524 3 chr3D.!!$R2 2848
3 TraesCS3B01G193700 chr3D 415994505 415995094 589 True 545.000000 545 83.670000 10 591 1 chr3D.!!$R1 581
4 TraesCS3B01G193700 chr3A 164928585 164933070 4485 False 982.500000 2335 92.525750 676 3556 4 chr3A.!!$F1 2880
5 TraesCS3B01G193700 chr5B 595222440 595223063 623 False 684.000000 684 86.508000 3 629 1 chr5B.!!$F1 626
6 TraesCS3B01G193700 chr2D 44489203 44489810 607 True 632.000000 632 85.460000 3 619 1 chr2D.!!$R1 616
7 TraesCS3B01G193700 chr5D 46687206 46687851 645 False 597.000000 597 83.920000 3 632 1 chr5D.!!$F1 629
8 TraesCS3B01G193700 chr5D 508214415 508214952 537 True 569.000000 569 85.978000 3 536 1 chr5D.!!$R1 533
9 TraesCS3B01G193700 chr7B 122728027 122728635 608 True 593.000000 593 84.279000 3 617 1 chr7B.!!$R1 614
10 TraesCS3B01G193700 chr7B 731948189 731948815 626 True 490.000000 490 81.123000 3 632 1 chr7B.!!$R2 629
11 TraesCS3B01G193700 chr7D 411325773 411326418 645 False 582.000000 582 83.538000 3 629 1 chr7D.!!$F1 626
12 TraesCS3B01G193700 chr7A 729051796 729052405 609 False 551.000000 551 83.065000 3 619 1 chr7A.!!$F1 616
13 TraesCS3B01G193700 chrUn 160367673 160370399 2726 True 442.000000 486 82.723500 3 632 2 chrUn.!!$R1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
441 2592 0.035439 CGGTAGGTCCATTTGCCACT 60.035 55.0 0.00 0.0 35.57 4.00 F
1690 3894 0.036388 TTCTCGCTTGCGATCCCTTT 60.036 50.0 18.05 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 4095 0.319211 CAAACGTCCACTCTGCGGTA 60.319 55.0 0.0 0.0 0.0 4.02 R
2808 6843 0.107214 TCGTGATGCCCCTCCAAATC 60.107 55.0 0.0 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.461222 ACAAAACCACTAAACCTAACACTTAAC 58.539 33.333 0.00 0.00 0.00 2.01
87 88 1.204467 AGGCAAACCATAAATGCACCG 59.796 47.619 0.00 0.00 41.80 4.94
117 151 5.343249 CACCATAAATGCAAAACTAGAGCC 58.657 41.667 0.00 0.00 0.00 4.70
153 194 8.813643 ACACTAGTTCATTCTAACAACACTAC 57.186 34.615 0.00 0.00 0.00 2.73
154 195 7.871463 ACACTAGTTCATTCTAACAACACTACC 59.129 37.037 0.00 0.00 0.00 3.18
179 224 5.365025 TGATTTCAACCAACCAAATGAAGGA 59.635 36.000 0.00 0.00 33.71 3.36
283 328 0.104144 TTTGGTGGGGGAGAAGAGGA 60.104 55.000 0.00 0.00 0.00 3.71
287 332 0.252742 GTGGGGGAGAAGAGGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
320 2468 2.103373 CGAGGGGAAGAAGATGAGTGA 58.897 52.381 0.00 0.00 0.00 3.41
322 2470 3.055819 CGAGGGGAAGAAGATGAGTGAAA 60.056 47.826 0.00 0.00 0.00 2.69
379 2529 3.155167 GGACCCTACCGCCAGAGG 61.155 72.222 0.00 0.00 37.30 3.69
432 2583 3.968837 ATCGGTGGCGGTAGGTCCA 62.969 63.158 0.00 0.00 35.57 4.02
441 2592 0.035439 CGGTAGGTCCATTTGCCACT 60.035 55.000 0.00 0.00 35.57 4.00
446 2598 1.145738 AGGTCCATTTGCCACTTCAGT 59.854 47.619 0.00 0.00 0.00 3.41
458 2610 0.105408 ACTTCAGTGGCCGTTAACGT 59.895 50.000 25.15 4.74 37.74 3.99
501 2653 1.219664 CCACCATAAAGGGCGACGA 59.780 57.895 0.00 0.00 43.89 4.20
505 2657 2.035449 CACCATAAAGGGCGACGATAGA 59.965 50.000 0.00 0.00 43.89 1.98
506 2658 2.897969 ACCATAAAGGGCGACGATAGAT 59.102 45.455 0.00 0.00 43.89 1.98
527 2679 3.142838 GTACAGCTACCGCCGGGA 61.143 66.667 8.57 0.00 36.60 5.14
595 2751 5.026121 ACTGAGGTCAGATCCTGATAAACA 58.974 41.667 13.99 0.00 46.59 2.83
596 2752 5.664908 ACTGAGGTCAGATCCTGATAAACAT 59.335 40.000 13.99 0.00 46.59 2.71
619 2775 3.242936 CGTCAAAAGGGTCAAAACACGAT 60.243 43.478 0.00 0.00 32.44 3.73
629 2786 2.290916 TCAAAACACGATTTTAGCCGCA 59.709 40.909 0.00 0.00 0.00 5.69
633 2790 1.810151 ACACGATTTTAGCCGCACAAT 59.190 42.857 0.00 0.00 0.00 2.71
634 2791 2.176369 CACGATTTTAGCCGCACAATG 58.824 47.619 0.00 0.00 0.00 2.82
635 2792 1.810151 ACGATTTTAGCCGCACAATGT 59.190 42.857 0.00 0.00 0.00 2.71
636 2793 2.227865 ACGATTTTAGCCGCACAATGTT 59.772 40.909 0.00 0.00 0.00 2.71
637 2794 2.845967 CGATTTTAGCCGCACAATGTTC 59.154 45.455 0.00 0.00 0.00 3.18
638 2795 2.715737 TTTTAGCCGCACAATGTTCC 57.284 45.000 0.00 0.00 0.00 3.62
639 2796 1.904287 TTTAGCCGCACAATGTTCCT 58.096 45.000 0.00 0.00 0.00 3.36
640 2797 2.772077 TTAGCCGCACAATGTTCCTA 57.228 45.000 0.00 0.00 0.00 2.94
641 2798 3.275617 TTAGCCGCACAATGTTCCTAT 57.724 42.857 0.00 0.00 0.00 2.57
642 2799 1.668419 AGCCGCACAATGTTCCTATC 58.332 50.000 0.00 0.00 0.00 2.08
643 2800 0.304705 GCCGCACAATGTTCCTATCG 59.695 55.000 0.00 0.00 0.00 2.92
644 2801 1.934589 CCGCACAATGTTCCTATCGA 58.065 50.000 0.00 0.00 0.00 3.59
645 2802 1.860950 CCGCACAATGTTCCTATCGAG 59.139 52.381 0.00 0.00 0.00 4.04
646 2803 2.481276 CCGCACAATGTTCCTATCGAGA 60.481 50.000 0.00 0.00 0.00 4.04
647 2804 3.186909 CGCACAATGTTCCTATCGAGAA 58.813 45.455 0.00 0.00 0.00 2.87
648 2805 3.616821 CGCACAATGTTCCTATCGAGAAA 59.383 43.478 0.00 0.00 0.00 2.52
649 2806 4.271049 CGCACAATGTTCCTATCGAGAAAT 59.729 41.667 0.00 0.00 0.00 2.17
650 2807 5.505286 GCACAATGTTCCTATCGAGAAATG 58.495 41.667 0.00 0.00 0.00 2.32
651 2808 5.504665 GCACAATGTTCCTATCGAGAAATGG 60.505 44.000 0.00 0.00 0.00 3.16
652 2809 4.576463 ACAATGTTCCTATCGAGAAATGGC 59.424 41.667 0.00 0.00 0.00 4.40
653 2810 3.194005 TGTTCCTATCGAGAAATGGCC 57.806 47.619 0.00 0.00 0.00 5.36
654 2811 2.135933 GTTCCTATCGAGAAATGGCCG 58.864 52.381 0.00 0.00 0.00 6.13
655 2812 0.679505 TCCTATCGAGAAATGGCCGG 59.320 55.000 0.00 0.00 0.00 6.13
656 2813 0.951040 CCTATCGAGAAATGGCCGGC 60.951 60.000 21.18 21.18 0.00 6.13
657 2814 0.249868 CTATCGAGAAATGGCCGGCA 60.250 55.000 30.85 15.30 0.00 5.69
658 2815 0.531974 TATCGAGAAATGGCCGGCAC 60.532 55.000 30.85 18.39 0.00 5.01
659 2816 2.535485 ATCGAGAAATGGCCGGCACA 62.535 55.000 30.85 23.70 0.00 4.57
660 2817 2.753966 CGAGAAATGGCCGGCACAG 61.754 63.158 30.85 6.96 0.00 3.66
661 2818 3.056313 GAGAAATGGCCGGCACAGC 62.056 63.158 30.85 11.60 0.00 4.40
662 2819 3.372730 GAAATGGCCGGCACAGCA 61.373 61.111 30.85 17.77 0.00 4.41
663 2820 3.346631 GAAATGGCCGGCACAGCAG 62.347 63.158 30.85 0.00 0.00 4.24
668 2825 4.697756 GCCGGCACAGCAGGTACA 62.698 66.667 24.80 0.00 45.32 2.90
669 2826 2.742372 CCGGCACAGCAGGTACAC 60.742 66.667 0.00 0.00 39.00 2.90
670 2827 2.030412 CGGCACAGCAGGTACACA 59.970 61.111 0.00 0.00 0.00 3.72
671 2828 1.596752 CGGCACAGCAGGTACACAA 60.597 57.895 0.00 0.00 0.00 3.33
672 2829 1.163420 CGGCACAGCAGGTACACAAA 61.163 55.000 0.00 0.00 0.00 2.83
673 2830 0.310854 GGCACAGCAGGTACACAAAC 59.689 55.000 0.00 0.00 0.00 2.93
674 2831 0.041312 GCACAGCAGGTACACAAACG 60.041 55.000 0.00 0.00 0.00 3.60
675 2832 1.295792 CACAGCAGGTACACAAACGT 58.704 50.000 0.00 0.00 0.00 3.99
676 2833 1.003972 CACAGCAGGTACACAAACGTG 60.004 52.381 0.00 0.00 40.42 4.49
677 2834 0.586319 CAGCAGGTACACAAACGTGG 59.414 55.000 0.00 0.00 38.80 4.94
678 2835 0.534203 AGCAGGTACACAAACGTGGG 60.534 55.000 0.00 0.00 38.80 4.61
753 2910 4.320456 CTGTCACCGCCCTGCACT 62.320 66.667 0.00 0.00 0.00 4.40
763 2920 2.670934 CCTGCACTTCCGCTGCTT 60.671 61.111 0.00 0.00 35.53 3.91
793 2950 2.594303 TCTGCAACCCCAACTGCG 60.594 61.111 0.00 0.00 41.63 5.18
833 3015 3.210232 AGATAGCTAGCGTACACCTCA 57.790 47.619 9.55 0.00 0.00 3.86
834 3016 3.552875 AGATAGCTAGCGTACACCTCAA 58.447 45.455 9.55 0.00 0.00 3.02
835 3017 3.566322 AGATAGCTAGCGTACACCTCAAG 59.434 47.826 9.55 0.00 0.00 3.02
836 3018 0.173708 AGCTAGCGTACACCTCAAGC 59.826 55.000 9.55 0.00 0.00 4.01
837 3019 1.140407 GCTAGCGTACACCTCAAGCG 61.140 60.000 0.00 0.00 0.00 4.68
838 3020 0.450583 CTAGCGTACACCTCAAGCGA 59.549 55.000 0.00 0.00 0.00 4.93
839 3021 0.169672 TAGCGTACACCTCAAGCGAC 59.830 55.000 0.00 0.00 0.00 5.19
840 3022 2.434134 GCGTACACCTCAAGCGACG 61.434 63.158 0.00 0.00 0.00 5.12
841 3023 2.434134 CGTACACCTCAAGCGACGC 61.434 63.158 13.03 13.03 0.00 5.19
842 3024 2.092882 GTACACCTCAAGCGACGCC 61.093 63.158 17.79 0.00 0.00 5.68
843 3025 3.291101 TACACCTCAAGCGACGCCC 62.291 63.158 17.79 0.00 0.00 6.13
852 3034 4.729856 GCGACGCCCGGTACAACT 62.730 66.667 9.14 0.00 39.04 3.16
853 3035 2.505557 CGACGCCCGGTACAACTC 60.506 66.667 0.00 0.00 33.91 3.01
862 3044 1.139095 GGTACAACTCCTCCTCGCG 59.861 63.158 0.00 0.00 0.00 5.87
882 3064 0.613292 TGCTTCGCTCTCTTCCTCCT 60.613 55.000 0.00 0.00 0.00 3.69
883 3065 0.179113 GCTTCGCTCTCTTCCTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
884 3066 0.459489 CTTCGCTCTCTTCCTCCTGG 59.541 60.000 0.00 0.00 0.00 4.45
886 3068 2.498726 GCTCTCTTCCTCCTGGCG 59.501 66.667 0.00 0.00 0.00 5.69
889 3081 4.521062 CTCTTCCTCCTGGCGCGG 62.521 72.222 8.83 0.00 0.00 6.46
1212 3416 2.203538 CCCCTGCAGGCACAAGTT 60.204 61.111 28.39 0.00 0.00 2.66
1508 3712 0.391661 CATGGTGGTCGAGTTCCAGG 60.392 60.000 8.09 4.74 35.49 4.45
1558 3762 0.329931 TCTGCTTCTCCTCCGAGAGT 59.670 55.000 0.00 0.00 45.86 3.24
1690 3894 0.036388 TTCTCGCTTGCGATCCCTTT 60.036 50.000 18.05 0.00 0.00 3.11
1696 3900 1.709147 CTTGCGATCCCTTTGCCGAG 61.709 60.000 0.00 0.00 33.31 4.63
1755 3959 0.958382 GTTCAGCACGGCCATGGTTA 60.958 55.000 14.67 0.00 0.00 2.85
1756 3960 0.250945 TTCAGCACGGCCATGGTTAA 60.251 50.000 14.67 0.00 0.00 2.01
1891 4095 3.071206 ACGCTGGCTGATCCGAGT 61.071 61.111 0.00 0.00 37.80 4.18
2023 4227 0.320421 CCGACAATCCAGACGTGGTT 60.320 55.000 0.00 0.00 45.28 3.67
2089 4293 2.649034 GAGGTCGTGGAGTGCGAA 59.351 61.111 0.00 0.00 40.19 4.70
2140 4360 1.901085 CAGCTACTCTTCCGGGCTT 59.099 57.895 0.00 0.00 0.00 4.35
2228 4452 4.143333 TTCCCCGCGCTAGCACTC 62.143 66.667 16.45 1.95 45.49 3.51
2240 4464 3.794028 CGCTAGCACTCTCTGTCAATTAC 59.206 47.826 16.45 0.00 0.00 1.89
2244 5962 4.815269 AGCACTCTCTGTCAATTACTGTC 58.185 43.478 0.00 0.00 0.00 3.51
2247 5965 6.209589 AGCACTCTCTGTCAATTACTGTCTTA 59.790 38.462 0.00 0.00 0.00 2.10
2346 6064 4.251268 ACAAGCTTACATTAGGTTCGACC 58.749 43.478 0.00 0.00 38.99 4.79
2350 6068 2.857592 TACATTAGGTTCGACCGCTC 57.142 50.000 0.00 0.00 44.90 5.03
2422 6447 7.067421 AGCTAGTAGTATGTGGATGTTTCCTA 58.933 38.462 0.00 0.00 43.07 2.94
2628 6653 6.147821 GCTACTTGTTCTAATGTGTGATGTGT 59.852 38.462 0.00 0.00 0.00 3.72
2629 6654 6.304356 ACTTGTTCTAATGTGTGATGTGTG 57.696 37.500 0.00 0.00 0.00 3.82
2668 6696 5.544176 ACCATTAGAGGCATTAGCTAGCTTA 59.456 40.000 24.88 15.26 41.70 3.09
2681 6709 5.365021 AGCTAGCTTAATGTCATGGTTCT 57.635 39.130 12.68 0.00 0.00 3.01
2733 6761 3.119209 TGCATAATTCATTTGCCGCTTCA 60.119 39.130 0.00 0.00 35.51 3.02
2739 6767 5.779529 ATTCATTTGCCGCTTCATTATCT 57.220 34.783 0.00 0.00 0.00 1.98
2743 6771 6.521162 TCATTTGCCGCTTCATTATCTAGTA 58.479 36.000 0.00 0.00 0.00 1.82
2758 6786 5.981088 ATCTAGTATCAGGTCATGAGCAG 57.019 43.478 25.71 18.43 42.53 4.24
2768 6796 4.987285 CAGGTCATGAGCAGTGTGTATATC 59.013 45.833 25.71 0.00 0.00 1.63
2791 6826 6.597562 TCCATCATAGTTTTAAATAGGGCGT 58.402 36.000 0.00 0.00 0.00 5.68
2792 6827 7.737869 TCCATCATAGTTTTAAATAGGGCGTA 58.262 34.615 0.00 0.00 0.00 4.42
2796 6831 9.787435 ATCATAGTTTTAAATAGGGCGTAATCA 57.213 29.630 0.00 0.00 0.00 2.57
2825 6860 0.259938 AGGATTTGGAGGGGCATCAC 59.740 55.000 0.00 0.00 0.00 3.06
2827 6862 0.107214 GATTTGGAGGGGCATCACGA 60.107 55.000 0.00 0.00 0.00 4.35
2831 6866 0.758734 TGGAGGGGCATCACGATAAG 59.241 55.000 0.00 0.00 0.00 1.73
2832 6867 0.603975 GGAGGGGCATCACGATAAGC 60.604 60.000 0.00 0.00 0.00 3.09
2833 6868 0.394565 GAGGGGCATCACGATAAGCT 59.605 55.000 0.00 0.00 0.00 3.74
2834 6869 0.107456 AGGGGCATCACGATAAGCTG 59.893 55.000 0.00 0.00 0.00 4.24
2835 6870 0.179045 GGGGCATCACGATAAGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
2836 6871 1.668419 GGGCATCACGATAAGCTGTT 58.332 50.000 0.00 0.00 0.00 3.16
2837 6872 2.017049 GGGCATCACGATAAGCTGTTT 58.983 47.619 0.00 0.00 0.00 2.83
2838 6873 3.202906 GGGCATCACGATAAGCTGTTTA 58.797 45.455 0.00 0.00 0.00 2.01
2839 6874 3.248602 GGGCATCACGATAAGCTGTTTAG 59.751 47.826 0.00 0.00 0.00 1.85
2851 6886 1.132262 GCTGTTTAGCGCCATTTAGCA 59.868 47.619 2.29 0.00 40.67 3.49
2862 6897 3.447742 GCCATTTAGCACCATTTAGCAC 58.552 45.455 0.00 0.00 0.00 4.40
2865 6900 1.091537 TTAGCACCATTTAGCACGCC 58.908 50.000 0.00 0.00 0.00 5.68
2881 6916 3.206150 CACGCCATAGCTCCAATTTAGT 58.794 45.455 0.00 0.00 36.60 2.24
2915 6951 2.867109 AGCGCTATTTGCCATATCCT 57.133 45.000 8.99 0.00 38.78 3.24
2987 7024 4.854173 TCTTATCATTTGCTGCCACCTTA 58.146 39.130 0.00 0.00 0.00 2.69
3074 7111 9.788960 GAATTTGCCTTTAGAATAAACTACCAG 57.211 33.333 0.00 0.00 0.00 4.00
3080 7117 7.626452 GCCTTTAGAATAAACTACCAGCAGTTG 60.626 40.741 0.00 0.00 38.74 3.16
3096 7137 4.451096 AGCAGTTGTGTTTACCAATCTACG 59.549 41.667 0.00 0.00 0.00 3.51
3103 7144 8.715088 GTTGTGTTTACCAATCTACGTTAAGAT 58.285 33.333 0.00 0.00 37.84 2.40
3108 7149 9.242477 GTTTACCAATCTACGTTAAGATAGACC 57.758 37.037 0.00 0.00 35.10 3.85
3140 7182 0.960364 TCAGCTCACCCGGAAATTGC 60.960 55.000 0.73 0.00 0.00 3.56
3146 7188 1.185315 CACCCGGAAATTGCCTTCAT 58.815 50.000 0.73 0.00 0.00 2.57
3152 7194 2.349590 GGAAATTGCCTTCATTGCCAC 58.650 47.619 0.00 0.00 0.00 5.01
3158 7200 1.202989 TGCCTTCATTGCCACTTGGTA 60.203 47.619 0.00 0.00 37.57 3.25
3159 7201 1.892474 GCCTTCATTGCCACTTGGTAA 59.108 47.619 0.91 0.91 43.77 2.85
3160 7202 2.298729 GCCTTCATTGCCACTTGGTAAA 59.701 45.455 2.68 0.00 42.91 2.01
3161 7203 3.860754 GCCTTCATTGCCACTTGGTAAAC 60.861 47.826 2.68 0.00 42.91 2.01
3173 7243 3.181454 ACTTGGTAAACTGTCACCAGGAG 60.181 47.826 22.31 15.96 45.29 3.69
3201 7271 3.073798 TGAGGGACACTTTTCATTGCCTA 59.926 43.478 0.00 0.00 0.00 3.93
3203 7273 4.019174 AGGGACACTTTTCATTGCCTATG 58.981 43.478 0.00 0.00 35.45 2.23
3243 7361 6.612247 TTGTAGTGGTATCACAACACTTTG 57.388 37.500 9.22 0.00 45.91 2.77
3244 7362 5.060506 TGTAGTGGTATCACAACACTTTGG 58.939 41.667 9.22 0.00 45.91 3.28
3245 7363 4.431416 AGTGGTATCACAACACTTTGGA 57.569 40.909 9.22 0.00 45.91 3.53
3246 7364 4.985538 AGTGGTATCACAACACTTTGGAT 58.014 39.130 9.22 0.00 45.91 3.41
3247 7365 5.385198 AGTGGTATCACAACACTTTGGATT 58.615 37.500 9.22 0.00 45.91 3.01
3248 7366 5.833131 AGTGGTATCACAACACTTTGGATTT 59.167 36.000 9.22 0.00 45.91 2.17
3249 7367 5.920273 GTGGTATCACAACACTTTGGATTTG 59.080 40.000 0.00 0.00 43.13 2.32
3250 7368 5.010516 TGGTATCACAACACTTTGGATTTGG 59.989 40.000 0.00 0.00 37.00 3.28
3251 7369 5.242838 GGTATCACAACACTTTGGATTTGGA 59.757 40.000 0.00 0.00 37.00 3.53
3311 7443 8.282592 TCTCATGAACATTTCTTTAGAAACACG 58.717 33.333 7.05 2.72 45.55 4.49
3312 7444 8.148807 TCATGAACATTTCTTTAGAAACACGA 57.851 30.769 7.05 0.00 45.55 4.35
3323 7455 6.540914 TCTTTAGAAACACGACACCTTGAATT 59.459 34.615 0.00 0.00 0.00 2.17
3324 7456 7.711772 TCTTTAGAAACACGACACCTTGAATTA 59.288 33.333 0.00 0.00 0.00 1.40
3325 7457 5.668558 AGAAACACGACACCTTGAATTAC 57.331 39.130 0.00 0.00 0.00 1.89
3351 7483 5.660864 ACCCAATTTGAGTTTCCTGAGAAAA 59.339 36.000 0.00 0.00 43.48 2.29
3445 7577 4.545678 TGGAAGCCAAGTGCCATTATATT 58.454 39.130 0.00 0.00 42.71 1.28
3509 7641 3.305950 GGGCATGCACTAACATTTTGTGA 60.306 43.478 21.36 0.00 33.95 3.58
3542 7674 7.027874 AGTTAGGATGAGGGTGATTTTGTTA 57.972 36.000 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.626526 AGTGTTAGGTTTAGTGGTTTTGTTATG 58.373 33.333 0.00 0.00 0.00 1.90
1 2 8.756486 AGTGTTAGGTTTAGTGGTTTTGTTAT 57.244 30.769 0.00 0.00 0.00 1.89
6 7 7.835682 AGGTTAAGTGTTAGGTTTAGTGGTTTT 59.164 33.333 0.00 0.00 0.00 2.43
17 18 4.565028 GGCAAGCTAGGTTAAGTGTTAGGT 60.565 45.833 6.90 0.00 0.00 3.08
30 31 0.883833 CCTTGTTGTGGCAAGCTAGG 59.116 55.000 0.00 0.00 43.17 3.02
153 194 5.212532 TCATTTGGTTGGTTGAAATCAGG 57.787 39.130 0.00 0.00 0.00 3.86
154 195 5.697633 CCTTCATTTGGTTGGTTGAAATCAG 59.302 40.000 0.00 0.00 0.00 2.90
179 224 1.344496 CCAAGGTACCTCTCCCATCCT 60.344 57.143 16.64 0.00 0.00 3.24
301 2446 4.559862 TTTCACTCATCTTCTTCCCCTC 57.440 45.455 0.00 0.00 0.00 4.30
302 2447 4.324874 CCATTTCACTCATCTTCTTCCCCT 60.325 45.833 0.00 0.00 0.00 4.79
320 2468 0.178964 CACTCACCACCCACCCATTT 60.179 55.000 0.00 0.00 0.00 2.32
322 2470 2.538141 CCACTCACCACCCACCCAT 61.538 63.158 0.00 0.00 0.00 4.00
379 2529 0.248289 TAACAACCTAGCGCTGGGAC 59.752 55.000 42.14 0.00 34.98 4.46
388 2538 2.223758 GCGGTAGGCTCTAACAACCTAG 60.224 54.545 0.00 0.00 36.74 3.02
441 2592 2.903284 GACGTTAACGGCCACTGAA 58.097 52.632 29.81 0.00 42.67 3.02
458 2610 3.691342 CCTTGACGGCCGTCTGGA 61.691 66.667 46.72 33.68 44.80 3.86
485 2637 2.313317 TCTATCGTCGCCCTTTATGGT 58.687 47.619 0.00 0.00 0.00 3.55
490 2642 2.093658 ACACAATCTATCGTCGCCCTTT 60.094 45.455 0.00 0.00 0.00 3.11
501 2653 3.243771 GGCGGTAGCTGTACACAATCTAT 60.244 47.826 0.00 0.00 44.37 1.98
505 2657 0.459585 CGGCGGTAGCTGTACACAAT 60.460 55.000 0.00 0.00 44.51 2.71
506 2658 1.080366 CGGCGGTAGCTGTACACAA 60.080 57.895 0.00 0.00 44.51 3.33
571 2727 5.485353 TGTTTATCAGGATCTGACCTCAGTT 59.515 40.000 0.00 0.00 43.63 3.16
574 2730 5.221322 CGATGTTTATCAGGATCTGACCTCA 60.221 44.000 0.00 0.00 43.63 3.86
576 2732 4.651503 ACGATGTTTATCAGGATCTGACCT 59.348 41.667 0.00 0.00 43.63 3.85
595 2751 3.242936 CGTGTTTTGACCCTTTTGACGAT 60.243 43.478 0.00 0.00 0.00 3.73
596 2752 2.096174 CGTGTTTTGACCCTTTTGACGA 59.904 45.455 0.00 0.00 0.00 4.20
619 2775 2.235016 AGGAACATTGTGCGGCTAAAA 58.765 42.857 0.00 0.00 0.00 1.52
629 2786 4.576463 GCCATTTCTCGATAGGAACATTGT 59.424 41.667 0.00 0.00 0.00 2.71
633 2790 2.483013 CGGCCATTTCTCGATAGGAACA 60.483 50.000 2.24 0.00 0.00 3.18
634 2791 2.135933 CGGCCATTTCTCGATAGGAAC 58.864 52.381 2.24 0.00 0.00 3.62
635 2792 1.070134 CCGGCCATTTCTCGATAGGAA 59.930 52.381 2.24 0.00 0.00 3.36
636 2793 0.679505 CCGGCCATTTCTCGATAGGA 59.320 55.000 2.24 0.00 0.00 2.94
637 2794 0.951040 GCCGGCCATTTCTCGATAGG 60.951 60.000 18.11 0.00 0.00 2.57
638 2795 0.249868 TGCCGGCCATTTCTCGATAG 60.250 55.000 26.77 0.00 0.00 2.08
639 2796 0.531974 GTGCCGGCCATTTCTCGATA 60.532 55.000 26.77 0.00 0.00 2.92
640 2797 1.819632 GTGCCGGCCATTTCTCGAT 60.820 57.895 26.77 0.00 0.00 3.59
641 2798 2.435938 GTGCCGGCCATTTCTCGA 60.436 61.111 26.77 0.00 0.00 4.04
642 2799 2.745884 TGTGCCGGCCATTTCTCG 60.746 61.111 26.77 0.00 0.00 4.04
643 2800 3.056313 GCTGTGCCGGCCATTTCTC 62.056 63.158 26.77 6.06 0.00 2.87
644 2801 3.064324 GCTGTGCCGGCCATTTCT 61.064 61.111 26.77 0.00 0.00 2.52
645 2802 3.346631 CTGCTGTGCCGGCCATTTC 62.347 63.158 26.77 9.93 34.37 2.17
646 2803 3.376078 CTGCTGTGCCGGCCATTT 61.376 61.111 26.77 0.00 34.37 2.32
651 2808 4.697756 TGTACCTGCTGTGCCGGC 62.698 66.667 22.73 22.73 36.37 6.13
652 2809 2.742372 GTGTACCTGCTGTGCCGG 60.742 66.667 0.00 0.00 38.87 6.13
653 2810 1.163420 TTTGTGTACCTGCTGTGCCG 61.163 55.000 0.00 0.00 0.00 5.69
654 2811 0.310854 GTTTGTGTACCTGCTGTGCC 59.689 55.000 0.00 0.00 0.00 5.01
655 2812 0.041312 CGTTTGTGTACCTGCTGTGC 60.041 55.000 0.00 0.00 0.00 4.57
656 2813 1.003972 CACGTTTGTGTACCTGCTGTG 60.004 52.381 0.00 0.00 41.34 3.66
657 2814 1.295792 CACGTTTGTGTACCTGCTGT 58.704 50.000 0.00 0.00 41.34 4.40
658 2815 0.586319 CCACGTTTGTGTACCTGCTG 59.414 55.000 0.00 0.00 44.92 4.41
659 2816 0.534203 CCCACGTTTGTGTACCTGCT 60.534 55.000 0.00 0.00 44.92 4.24
660 2817 1.946267 CCCACGTTTGTGTACCTGC 59.054 57.895 0.00 0.00 44.92 4.85
661 2818 0.816018 TGCCCACGTTTGTGTACCTG 60.816 55.000 0.00 0.00 44.92 4.00
662 2819 0.534203 CTGCCCACGTTTGTGTACCT 60.534 55.000 0.00 0.00 44.92 3.08
663 2820 1.946267 CTGCCCACGTTTGTGTACC 59.054 57.895 0.00 0.00 44.92 3.34
664 2821 1.281656 GCTGCCCACGTTTGTGTAC 59.718 57.895 0.00 0.00 44.92 2.90
665 2822 1.153147 TGCTGCCCACGTTTGTGTA 60.153 52.632 0.00 0.00 44.92 2.90
666 2823 2.439338 TGCTGCCCACGTTTGTGT 60.439 55.556 0.00 0.00 44.92 3.72
667 2824 2.121564 CTCTGCTGCCCACGTTTGTG 62.122 60.000 0.00 0.00 46.00 3.33
668 2825 1.893808 CTCTGCTGCCCACGTTTGT 60.894 57.895 0.00 0.00 0.00 2.83
669 2826 2.949106 CTCTGCTGCCCACGTTTG 59.051 61.111 0.00 0.00 0.00 2.93
670 2827 2.980233 GCTCTGCTGCCCACGTTT 60.980 61.111 0.00 0.00 0.00 3.60
671 2828 4.254709 TGCTCTGCTGCCCACGTT 62.255 61.111 0.00 0.00 0.00 3.99
672 2829 4.694233 CTGCTCTGCTGCCCACGT 62.694 66.667 0.00 0.00 0.00 4.49
753 2910 4.760047 GGCGGAGAAGCAGCGGAA 62.760 66.667 0.00 0.00 38.70 4.30
759 2916 3.064987 GAGCTACGGCGGAGAAGCA 62.065 63.158 26.08 0.00 44.37 3.91
761 2918 1.064946 CAGAGCTACGGCGGAGAAG 59.935 63.158 26.08 9.88 44.37 2.85
763 2920 3.518998 GCAGAGCTACGGCGGAGA 61.519 66.667 26.08 0.00 44.37 3.71
793 2950 2.044888 TTTGCGTGCGGAATCTTTTC 57.955 45.000 0.00 0.00 0.00 2.29
833 3015 3.993584 TTGTACCGGGCGTCGCTT 61.994 61.111 18.11 1.90 37.59 4.68
834 3016 4.729856 GTTGTACCGGGCGTCGCT 62.730 66.667 18.11 0.00 37.59 4.93
835 3017 4.729856 AGTTGTACCGGGCGTCGC 62.730 66.667 9.22 9.22 37.59 5.19
836 3018 2.505557 GAGTTGTACCGGGCGTCG 60.506 66.667 6.32 0.00 38.88 5.12
837 3019 2.125793 GGAGTTGTACCGGGCGTC 60.126 66.667 6.32 0.00 0.00 5.19
838 3020 2.602568 AGGAGTTGTACCGGGCGT 60.603 61.111 6.32 0.00 0.00 5.68
839 3021 2.183555 GAGGAGTTGTACCGGGCG 59.816 66.667 6.32 0.00 0.00 6.13
840 3022 1.957765 GAGGAGGAGTTGTACCGGGC 61.958 65.000 6.32 0.00 0.00 6.13
841 3023 1.664321 CGAGGAGGAGTTGTACCGGG 61.664 65.000 6.32 0.00 0.00 5.73
842 3024 1.807886 CGAGGAGGAGTTGTACCGG 59.192 63.158 0.00 0.00 0.00 5.28
843 3025 1.139095 GCGAGGAGGAGTTGTACCG 59.861 63.158 0.00 0.00 0.00 4.02
844 3026 1.139095 CGCGAGGAGGAGTTGTACC 59.861 63.158 0.00 0.00 0.00 3.34
845 3027 0.456312 CACGCGAGGAGGAGTTGTAC 60.456 60.000 15.93 0.00 0.00 2.90
846 3028 1.880894 CACGCGAGGAGGAGTTGTA 59.119 57.895 15.93 0.00 0.00 2.41
847 3029 2.651361 CACGCGAGGAGGAGTTGT 59.349 61.111 15.93 0.00 0.00 3.32
848 3030 2.771763 AAGCACGCGAGGAGGAGTTG 62.772 60.000 15.93 0.00 0.00 3.16
849 3031 2.493907 GAAGCACGCGAGGAGGAGTT 62.494 60.000 15.93 0.00 0.00 3.01
850 3032 2.992114 AAGCACGCGAGGAGGAGT 60.992 61.111 15.93 0.00 0.00 3.85
851 3033 2.202676 GAAGCACGCGAGGAGGAG 60.203 66.667 15.93 0.00 0.00 3.69
852 3034 4.116328 CGAAGCACGCGAGGAGGA 62.116 66.667 15.93 0.00 34.51 3.71
1196 3400 2.270986 GGAACTTGTGCCTGCAGGG 61.271 63.158 33.46 18.83 35.18 4.45
1280 3484 2.685380 CAGCTCCCCTTCGTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
1428 3632 1.201855 CGTTGTTGAAGATGAGCTCGC 60.202 52.381 9.64 3.59 0.00 5.03
1432 3636 2.413453 GAGGTCGTTGTTGAAGATGAGC 59.587 50.000 0.00 0.00 0.00 4.26
1678 3882 1.745115 CTCGGCAAAGGGATCGCAA 60.745 57.895 12.83 0.00 0.00 4.85
1696 3900 2.520536 ATACTCCATGGCCGGCTCC 61.521 63.158 28.56 11.61 0.00 4.70
1793 3997 2.029288 CGTTGCTGACCTGCACGAT 61.029 57.895 13.72 0.00 43.20 3.73
1855 4059 3.005540 GCGCATGGAAACCTTGGGG 62.006 63.158 0.30 5.30 40.32 4.96
1891 4095 0.319211 CAAACGTCCACTCTGCGGTA 60.319 55.000 0.00 0.00 0.00 4.02
1975 4179 2.202756 GCGAGTACGGGAGCCTTG 60.203 66.667 0.00 0.00 40.15 3.61
2006 4210 3.660865 AGTAAACCACGTCTGGATTGTC 58.339 45.455 0.00 0.00 40.55 3.18
2023 4227 2.870435 GCGCTGTTCCAGGAAGAAGTAA 60.870 50.000 0.54 0.00 31.21 2.24
2140 4360 3.573967 GAGGAAGCTCAAATGGGAAAACA 59.426 43.478 0.00 0.00 0.00 2.83
2228 4452 8.519526 AGAAGAGTAAGACAGTAATTGACAGAG 58.480 37.037 0.00 0.00 0.00 3.35
2240 4464 6.767524 ACATCCAGTAGAAGAGTAAGACAG 57.232 41.667 0.00 0.00 0.00 3.51
2244 5962 6.926272 GGCATAACATCCAGTAGAAGAGTAAG 59.074 42.308 0.00 0.00 0.00 2.34
2247 5965 4.101741 GGGCATAACATCCAGTAGAAGAGT 59.898 45.833 0.00 0.00 0.00 3.24
2297 6015 2.228925 TGCATAATGGCATACGCACAT 58.771 42.857 12.66 0.00 39.25 3.21
2309 6027 8.686397 TGTAAGCTTGTTTGTTATGCATAATG 57.314 30.769 21.52 7.97 0.00 1.90
2346 6064 1.478510 ACCAATCCACACTCTAGAGCG 59.521 52.381 19.97 13.07 0.00 5.03
2350 6068 4.440802 GCAGTAGACCAATCCACACTCTAG 60.441 50.000 0.00 0.00 0.00 2.43
2422 6447 8.773033 AAATGAGGAATAAATAGATGGCTTGT 57.227 30.769 0.00 0.00 0.00 3.16
2458 6483 8.948853 TTCAGCAAAATAAATGAAGTTAGTCG 57.051 30.769 0.00 0.00 0.00 4.18
2628 6653 1.196012 TGGTACCACACAGTCACACA 58.804 50.000 11.60 0.00 0.00 3.72
2629 6654 2.543777 ATGGTACCACACAGTCACAC 57.456 50.000 19.09 0.00 0.00 3.82
2709 6737 2.129607 GCGGCAAATGAATTATGCAGG 58.870 47.619 0.00 0.00 41.80 4.85
2733 6761 7.673504 ACTGCTCATGACCTGATACTAGATAAT 59.326 37.037 0.00 0.00 32.10 1.28
2739 6767 4.098501 CACACTGCTCATGACCTGATACTA 59.901 45.833 0.00 0.00 32.10 1.82
2743 6771 1.627329 ACACACTGCTCATGACCTGAT 59.373 47.619 0.00 0.00 32.10 2.90
2768 6796 6.877611 ACGCCCTATTTAAAACTATGATGG 57.122 37.500 0.00 0.00 0.00 3.51
2791 6826 5.242171 TCCAAATCCTATAGCGTCGTGATTA 59.758 40.000 0.00 0.00 0.00 1.75
2792 6827 4.038763 TCCAAATCCTATAGCGTCGTGATT 59.961 41.667 0.00 0.00 0.00 2.57
2796 6831 2.296471 CCTCCAAATCCTATAGCGTCGT 59.704 50.000 0.00 0.00 0.00 4.34
2808 6843 0.107214 TCGTGATGCCCCTCCAAATC 60.107 55.000 0.00 0.00 0.00 2.17
2825 6860 1.286501 TGGCGCTAAACAGCTTATCG 58.713 50.000 7.64 0.00 33.30 2.92
2827 6862 4.261197 GCTAAATGGCGCTAAACAGCTTAT 60.261 41.667 7.64 0.00 0.00 1.73
2831 6866 1.132262 TGCTAAATGGCGCTAAACAGC 59.868 47.619 7.64 11.92 34.52 4.40
2832 6867 2.477863 GGTGCTAAATGGCGCTAAACAG 60.478 50.000 7.64 0.52 41.78 3.16
2833 6868 1.470890 GGTGCTAAATGGCGCTAAACA 59.529 47.619 7.64 0.00 41.78 2.83
2834 6869 1.470890 TGGTGCTAAATGGCGCTAAAC 59.529 47.619 7.64 0.00 41.78 2.01
2835 6870 1.827681 TGGTGCTAAATGGCGCTAAA 58.172 45.000 7.64 0.00 41.78 1.85
2836 6871 2.051334 ATGGTGCTAAATGGCGCTAA 57.949 45.000 7.64 0.00 41.78 3.09
2837 6872 2.051334 AATGGTGCTAAATGGCGCTA 57.949 45.000 7.64 0.00 41.78 4.26
2838 6873 1.185315 AAATGGTGCTAAATGGCGCT 58.815 45.000 7.64 0.00 41.78 5.92
2839 6874 2.731217 CTAAATGGTGCTAAATGGCGC 58.269 47.619 0.00 0.00 41.41 6.53
2840 6875 2.098934 TGCTAAATGGTGCTAAATGGCG 59.901 45.455 0.00 0.00 34.52 5.69
2848 6883 0.680921 ATGGCGTGCTAAATGGTGCT 60.681 50.000 0.00 0.00 0.00 4.40
2851 6886 1.134098 AGCTATGGCGTGCTAAATGGT 60.134 47.619 0.00 0.00 44.37 3.55
2862 6897 3.002656 CACACTAAATTGGAGCTATGGCG 59.997 47.826 0.00 0.00 44.37 5.69
2865 6900 6.925610 TTAGCACACTAAATTGGAGCTATG 57.074 37.500 0.00 0.00 35.41 2.23
2881 6916 2.083774 AGCGCTAAAAGCATTAGCACA 58.916 42.857 24.89 0.00 45.63 4.57
2941 6978 9.664332 AGATAACACTTATAGAATCATGCATCC 57.336 33.333 0.00 0.00 0.00 3.51
2959 6996 5.973565 GTGGCAGCAAATGATAAGATAACAC 59.026 40.000 0.00 0.00 0.00 3.32
3059 7096 6.765403 ACACAACTGCTGGTAGTTTATTCTA 58.235 36.000 1.52 0.00 38.78 2.10
3074 7111 4.212636 ACGTAGATTGGTAAACACAACTGC 59.787 41.667 0.00 0.00 0.00 4.40
3080 7117 9.793252 TCTATCTTAACGTAGATTGGTAAACAC 57.207 33.333 6.17 0.00 36.34 3.32
3096 7137 7.289310 ACTCCACTACCTAGGTCTATCTTAAC 58.711 42.308 20.32 0.00 0.00 2.01
3103 7144 3.117963 GCTGACTCCACTACCTAGGTCTA 60.118 52.174 20.32 0.00 0.00 2.59
3108 7149 2.685897 GTGAGCTGACTCCACTACCTAG 59.314 54.545 0.00 0.00 42.74 3.02
3140 7182 3.573967 AGTTTACCAAGTGGCAATGAAGG 59.426 43.478 0.00 1.90 39.32 3.46
3146 7188 3.006112 TGACAGTTTACCAAGTGGCAA 57.994 42.857 0.00 0.00 46.74 4.52
3201 7271 8.571336 CACTACAATCAAAAGAAAAGGTCTCAT 58.429 33.333 0.00 0.00 34.56 2.90
3203 7273 7.013369 ACCACTACAATCAAAAGAAAAGGTCTC 59.987 37.037 0.00 0.00 34.56 3.36
3248 7366 5.502089 AGAAATTCAAATTGGGCAATCCA 57.498 34.783 0.00 0.00 45.43 3.41
3249 7367 5.939296 TCAAGAAATTCAAATTGGGCAATCC 59.061 36.000 0.00 0.00 0.00 3.01
3250 7368 6.875195 TCTCAAGAAATTCAAATTGGGCAATC 59.125 34.615 0.00 0.00 0.00 2.67
3251 7369 6.771573 TCTCAAGAAATTCAAATTGGGCAAT 58.228 32.000 0.00 0.00 0.00 3.56
3299 7431 5.728351 TTCAAGGTGTCGTGTTTCTAAAG 57.272 39.130 0.00 0.00 0.00 1.85
3311 7443 7.175990 TCAAATTGGGTAGTAATTCAAGGTGTC 59.824 37.037 0.00 0.00 0.00 3.67
3312 7444 7.007723 TCAAATTGGGTAGTAATTCAAGGTGT 58.992 34.615 0.00 0.00 0.00 4.16
3323 7455 6.271391 TCTCAGGAAACTCAAATTGGGTAGTA 59.729 38.462 0.00 0.00 40.21 1.82
3324 7456 5.073144 TCTCAGGAAACTCAAATTGGGTAGT 59.927 40.000 0.00 0.00 40.21 2.73
3325 7457 5.560724 TCTCAGGAAACTCAAATTGGGTAG 58.439 41.667 0.00 0.00 40.21 3.18
3351 7483 7.877097 GTGAAGAGTATTCATGAGAATATGCCT 59.123 37.037 3.07 0.00 45.63 4.75
3423 7555 2.530460 ATAATGGCACTTGGCTTCCA 57.470 45.000 4.25 0.00 44.01 3.53
3445 7577 4.704540 CCCATATGCTAACACTCAAAACCA 59.295 41.667 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.