Multiple sequence alignment - TraesCS3B01G193000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G193000 chr3B 100.000 2716 0 0 1 2716 207303119 207305834 0.000000e+00 5016.0
1 TraesCS3B01G193000 chr3B 96.800 125 4 0 1834 1958 207304917 207305041 2.740000e-50 209.0
2 TraesCS3B01G193000 chr3B 96.800 125 4 0 1799 1923 207304952 207305076 2.740000e-50 209.0
3 TraesCS3B01G193000 chr3B 82.632 190 29 3 1956 2141 207304072 207304261 6.020000e-37 165.0
4 TraesCS3B01G193000 chr3B 82.632 190 29 3 954 1143 207305074 207305259 6.020000e-37 165.0
5 TraesCS3B01G193000 chr3B 96.667 90 3 0 1869 1958 207304917 207305006 1.680000e-32 150.0
6 TraesCS3B01G193000 chr3B 96.667 90 3 0 1799 1888 207304987 207305076 1.680000e-32 150.0
7 TraesCS3B01G193000 chr3B 98.182 55 1 0 1799 1853 207305022 207305076 2.230000e-16 97.1
8 TraesCS3B01G193000 chr3D 91.621 907 46 9 1000 1888 143960036 143960930 0.000000e+00 1227.0
9 TraesCS3B01G193000 chr3D 92.995 828 34 9 1904 2716 143960876 143961694 0.000000e+00 1186.0
10 TraesCS3B01G193000 chr3D 92.506 427 29 3 14 438 143959287 143959712 2.310000e-170 608.0
11 TraesCS3B01G193000 chr3D 91.519 283 11 6 682 961 143959766 143960038 7.100000e-101 377.0
12 TraesCS3B01G193000 chr3D 84.848 198 26 3 954 1151 143960928 143961121 2.130000e-46 196.0
13 TraesCS3B01G193000 chr3D 98.361 61 1 0 1793 1853 143960870 143960930 1.030000e-19 108.0
14 TraesCS3B01G193000 chr3D 98.182 55 1 0 1869 1923 143960876 143960930 2.230000e-16 97.1
15 TraesCS3B01G193000 chr3D 90.909 66 6 0 1718 1783 147277474 147277409 3.720000e-14 89.8
16 TraesCS3B01G193000 chrUn 87.150 856 73 15 1869 2716 73916159 73915333 0.000000e+00 937.0
17 TraesCS3B01G193000 chrUn 95.833 336 8 3 1342 1676 73919994 73919664 3.080000e-149 538.0
18 TraesCS3B01G193000 chrUn 85.385 520 38 16 878 1393 73920458 73919973 3.120000e-139 505.0
19 TraesCS3B01G193000 chrUn 87.895 380 25 8 20 392 73932707 73932342 6.950000e-116 427.0
20 TraesCS3B01G193000 chrUn 94.397 232 8 4 644 873 73932335 73932107 4.300000e-93 351.0
21 TraesCS3B01G193000 chrUn 95.652 115 4 1 1692 1806 73917657 73917544 1.660000e-42 183.0
22 TraesCS3B01G193000 chrUn 82.828 198 30 3 954 1151 73916072 73915879 1.000000e-39 174.0
23 TraesCS3B01G193000 chrUn 93.333 90 6 0 1799 1888 73916159 73916070 1.700000e-27 134.0
24 TraesCS3B01G193000 chr3A 90.050 603 34 11 1373 1955 163801123 163801719 0.000000e+00 758.0
25 TraesCS3B01G193000 chr3A 92.272 427 30 3 14 438 163800015 163800440 1.080000e-168 603.0
26 TraesCS3B01G193000 chr3A 89.247 372 26 3 1000 1363 163800778 163801143 1.150000e-123 453.0
27 TraesCS3B01G193000 chr3A 91.459 281 14 8 682 961 163800509 163800780 7.100000e-101 377.0
28 TraesCS3B01G193000 chr3A 94.643 224 12 0 1793 2016 163801592 163801815 5.570000e-92 348.0
29 TraesCS3B01G193000 chr3A 92.116 241 7 4 2483 2716 163801817 163802052 2.020000e-86 329.0
30 TraesCS3B01G193000 chr3A 92.800 125 9 0 1799 1923 163801633 163801757 5.970000e-42 182.0
31 TraesCS3B01G193000 chr3A 95.556 90 4 0 1799 1888 163801668 163801757 7.840000e-31 145.0
32 TraesCS3B01G193000 chr3A 92.222 90 7 0 1869 1958 163801598 163801687 7.890000e-26 128.0
33 TraesCS3B01G193000 chr3A 96.721 61 2 0 954 1014 163801755 163801815 4.780000e-18 102.0
34 TraesCS3B01G193000 chr3A 92.537 67 5 0 1717 1783 737369171 737369237 2.230000e-16 97.1
35 TraesCS3B01G193000 chr3A 94.545 55 3 0 1799 1853 163801703 163801757 4.820000e-13 86.1
36 TraesCS3B01G193000 chr4D 95.000 60 3 0 1719 1778 466837140 466837199 8.010000e-16 95.3
37 TraesCS3B01G193000 chr5B 92.308 65 5 0 1719 1783 382888137 382888073 2.880000e-15 93.5
38 TraesCS3B01G193000 chr5A 92.188 64 5 0 1720 1783 649435085 649435022 1.040000e-14 91.6
39 TraesCS3B01G193000 chr1B 93.443 61 4 0 1719 1779 17540241 17540301 1.040000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G193000 chr3B 207303119 207305834 2715 False 770.137500 5016 93.797500 1 2716 8 chr3B.!!$F1 2715
1 TraesCS3B01G193000 chr3D 143959287 143961694 2407 False 542.728571 1227 92.861714 14 2716 7 chr3D.!!$F1 2702
2 TraesCS3B01G193000 chrUn 73915333 73920458 5125 True 411.833333 937 90.030167 878 2716 6 chrUn.!!$R1 1838
3 TraesCS3B01G193000 chrUn 73932107 73932707 600 True 389.000000 427 91.146000 20 873 2 chrUn.!!$R2 853
4 TraesCS3B01G193000 chr3A 163800015 163802052 2037 False 319.190909 758 92.875545 14 2716 11 chr3A.!!$F2 2702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 606 0.110147 GATCTCCGTCCGCGTGATAG 60.11 60.0 4.92 2.35 36.15 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 5321 0.316204 GCCATACAATGCTGCCATCC 59.684 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.526770 CATCGCACAGCCTCATCA 57.473 55.556 0.00 0.00 0.00 3.07
18 19 2.308344 CATCGCACAGCCTCATCAG 58.692 57.895 0.00 0.00 0.00 2.90
149 156 2.425592 CTCACCAGTGGCGTCCAA 59.574 61.111 9.78 0.00 34.18 3.53
167 174 2.441532 CCGAGGTAGGCCCGAGAA 60.442 66.667 0.00 0.00 38.74 2.87
183 190 0.395311 AGAAGTGGACGGCGGATAGA 60.395 55.000 13.24 0.00 0.00 1.98
197 204 1.133325 GGATAGACAGCCTCTCTCCCA 60.133 57.143 3.19 0.00 36.61 4.37
250 258 1.100463 TCCAAAGCAGAACAAGCGCA 61.100 50.000 11.47 0.00 37.01 6.09
254 263 0.815213 AAGCAGAACAAGCGCAGTCA 60.815 50.000 11.47 0.00 37.01 3.41
262 271 0.740164 CAAGCGCAGTCAGAGAGCAT 60.740 55.000 11.47 0.00 0.00 3.79
273 282 4.826733 AGTCAGAGAGCATATGAACTCGAT 59.173 41.667 6.97 0.00 37.99 3.59
275 284 3.674281 CAGAGAGCATATGAACTCGATGC 59.326 47.826 6.97 7.86 45.12 3.91
277 286 3.388308 AGAGCATATGAACTCGATGCAC 58.612 45.455 6.97 10.56 46.78 4.57
311 320 0.321346 TCATCACCATGTCGTGCTGT 59.679 50.000 6.04 0.00 32.86 4.40
364 373 5.513267 GCGGAGGGTAAATTATCTCCAATCT 60.513 44.000 18.44 0.00 44.37 2.40
371 380 7.458170 GGGTAAATTATCTCCAATCTCCTCCTA 59.542 40.741 0.00 0.00 0.00 2.94
392 401 2.031258 TCTCTGCGTTCGATCTCTCT 57.969 50.000 0.00 0.00 0.00 3.10
393 402 1.668237 TCTCTGCGTTCGATCTCTCTG 59.332 52.381 0.00 0.00 0.00 3.35
438 447 5.012148 ACCTTTTCTTTCATCTCTCCTCGAA 59.988 40.000 0.00 0.00 0.00 3.71
440 449 3.766676 TCTTTCATCTCTCCTCGAACG 57.233 47.619 0.00 0.00 0.00 3.95
441 450 3.082548 TCTTTCATCTCTCCTCGAACGT 58.917 45.455 0.00 0.00 0.00 3.99
442 451 4.259356 TCTTTCATCTCTCCTCGAACGTA 58.741 43.478 0.00 0.00 0.00 3.57
444 453 1.931841 TCATCTCTCCTCGAACGTACG 59.068 52.381 15.01 15.01 0.00 3.67
445 454 0.656785 ATCTCTCCTCGAACGTACGC 59.343 55.000 16.72 0.00 0.00 4.42
446 455 0.671472 TCTCTCCTCGAACGTACGCA 60.671 55.000 16.72 0.00 0.00 5.24
447 456 0.520827 CTCTCCTCGAACGTACGCAC 60.521 60.000 16.72 8.69 0.00 5.34
456 465 4.443263 CGTACGCACGCACGAACG 62.443 66.667 10.10 2.41 42.05 3.95
457 466 3.092841 GTACGCACGCACGAACGA 61.093 61.111 14.23 0.00 36.70 3.85
459 468 1.730192 TACGCACGCACGAACGAAT 60.730 52.632 14.23 0.00 36.70 3.34
461 470 2.716828 CGCACGCACGAACGAATCT 61.717 57.895 8.71 0.00 36.70 2.40
462 471 1.225475 GCACGCACGAACGAATCTG 60.225 57.895 8.71 0.00 36.70 2.90
464 473 1.372997 ACGCACGAACGAATCTGCT 60.373 52.632 8.71 0.00 36.70 4.24
466 475 0.163788 CGCACGAACGAATCTGCTTT 59.836 50.000 0.14 0.00 33.02 3.51
467 476 1.595609 GCACGAACGAATCTGCTTTG 58.404 50.000 0.14 0.00 32.68 2.77
468 477 1.725931 GCACGAACGAATCTGCTTTGG 60.726 52.381 0.14 0.00 32.68 3.28
469 478 1.798223 CACGAACGAATCTGCTTTGGA 59.202 47.619 0.14 0.00 0.00 3.53
471 480 2.288825 ACGAACGAATCTGCTTTGGAGA 60.289 45.455 0.14 0.00 0.00 3.71
472 481 2.346847 CGAACGAATCTGCTTTGGAGAG 59.653 50.000 0.00 0.00 0.00 3.20
473 482 2.393271 ACGAATCTGCTTTGGAGAGG 57.607 50.000 0.00 0.00 0.00 3.69
474 483 1.065854 ACGAATCTGCTTTGGAGAGGG 60.066 52.381 0.00 0.00 0.00 4.30
475 484 1.745141 CGAATCTGCTTTGGAGAGGGG 60.745 57.143 0.00 0.00 0.00 4.79
476 485 0.627986 AATCTGCTTTGGAGAGGGGG 59.372 55.000 0.00 0.00 0.00 5.40
477 486 0.253347 ATCTGCTTTGGAGAGGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
479 488 0.405585 CTGCTTTGGAGAGGGGGAAA 59.594 55.000 0.00 0.00 0.00 3.13
480 489 0.856982 TGCTTTGGAGAGGGGGAAAA 59.143 50.000 0.00 0.00 0.00 2.29
481 490 1.219213 TGCTTTGGAGAGGGGGAAAAA 59.781 47.619 0.00 0.00 0.00 1.94
482 491 1.895798 GCTTTGGAGAGGGGGAAAAAG 59.104 52.381 0.00 0.00 0.00 2.27
483 492 2.529632 CTTTGGAGAGGGGGAAAAAGG 58.470 52.381 0.00 0.00 0.00 3.11
484 493 1.841334 TTGGAGAGGGGGAAAAAGGA 58.159 50.000 0.00 0.00 0.00 3.36
486 495 0.331954 GGAGAGGGGGAAAAAGGACC 59.668 60.000 0.00 0.00 0.00 4.46
489 498 1.373536 GAGGGGGAAAAAGGACCTCT 58.626 55.000 0.00 0.00 43.37 3.69
490 499 1.711375 GAGGGGGAAAAAGGACCTCTT 59.289 52.381 0.00 0.00 43.37 2.85
491 500 1.711375 AGGGGGAAAAAGGACCTCTTC 59.289 52.381 0.00 0.87 28.29 2.87
493 502 2.291024 GGGGGAAAAAGGACCTCTTCTC 60.291 54.545 13.38 10.54 33.94 2.87
495 504 3.560239 GGGGAAAAAGGACCTCTTCTCTG 60.560 52.174 13.36 0.00 33.94 3.35
497 506 4.564613 GGGAAAAAGGACCTCTTCTCTGAG 60.565 50.000 13.38 0.00 33.94 3.35
499 508 5.045942 GGAAAAAGGACCTCTTCTCTGAGAT 60.046 44.000 8.42 0.00 36.23 2.75
501 510 6.790232 AAAAGGACCTCTTCTCTGAGATAG 57.210 41.667 8.42 9.06 36.23 2.08
502 511 4.453480 AGGACCTCTTCTCTGAGATAGG 57.547 50.000 24.41 24.41 36.23 2.57
503 512 3.791545 AGGACCTCTTCTCTGAGATAGGT 59.208 47.826 28.65 28.65 41.17 3.08
504 513 4.141251 AGGACCTCTTCTCTGAGATAGGTC 60.141 50.000 34.82 34.82 46.52 3.85
505 514 4.787551 GACCTCTTCTCTGAGATAGGTCA 58.212 47.826 36.00 15.55 46.51 4.02
509 518 2.420058 TCTCTGAGATAGGTCACGCA 57.580 50.000 2.58 0.00 0.00 5.24
510 519 2.017782 TCTCTGAGATAGGTCACGCAC 58.982 52.381 2.58 0.00 0.00 5.34
511 520 0.733150 TCTGAGATAGGTCACGCACG 59.267 55.000 0.00 0.00 0.00 5.34
512 521 0.867753 CTGAGATAGGTCACGCACGC 60.868 60.000 0.00 0.00 0.00 5.34
513 522 1.313091 TGAGATAGGTCACGCACGCT 61.313 55.000 0.00 0.00 0.00 5.07
514 523 0.867753 GAGATAGGTCACGCACGCTG 60.868 60.000 0.00 0.00 0.00 5.18
515 524 1.153823 GATAGGTCACGCACGCTGT 60.154 57.895 0.00 0.00 0.00 4.40
516 525 1.140407 GATAGGTCACGCACGCTGTC 61.140 60.000 0.00 0.00 0.00 3.51
517 526 1.595993 ATAGGTCACGCACGCTGTCT 61.596 55.000 0.00 0.00 0.00 3.41
518 527 0.956902 TAGGTCACGCACGCTGTCTA 60.957 55.000 0.00 0.00 0.00 2.59
519 528 1.153823 GGTCACGCACGCTGTCTAT 60.154 57.895 0.00 0.00 0.00 1.98
520 529 0.736325 GGTCACGCACGCTGTCTATT 60.736 55.000 0.00 0.00 0.00 1.73
521 530 1.068474 GTCACGCACGCTGTCTATTT 58.932 50.000 0.00 0.00 0.00 1.40
522 531 1.067693 TCACGCACGCTGTCTATTTG 58.932 50.000 0.00 0.00 0.00 2.32
523 532 0.790207 CACGCACGCTGTCTATTTGT 59.210 50.000 0.00 0.00 0.00 2.83
524 533 1.194547 CACGCACGCTGTCTATTTGTT 59.805 47.619 0.00 0.00 0.00 2.83
525 534 1.871039 ACGCACGCTGTCTATTTGTTT 59.129 42.857 0.00 0.00 0.00 2.83
526 535 3.061322 ACGCACGCTGTCTATTTGTTTA 58.939 40.909 0.00 0.00 0.00 2.01
527 536 3.682858 ACGCACGCTGTCTATTTGTTTAT 59.317 39.130 0.00 0.00 0.00 1.40
528 537 4.201685 ACGCACGCTGTCTATTTGTTTATC 60.202 41.667 0.00 0.00 0.00 1.75
529 538 4.263800 GCACGCTGTCTATTTGTTTATCG 58.736 43.478 0.00 0.00 0.00 2.92
530 539 4.201685 GCACGCTGTCTATTTGTTTATCGT 60.202 41.667 0.00 0.00 0.00 3.73
531 540 5.670341 GCACGCTGTCTATTTGTTTATCGTT 60.670 40.000 0.00 0.00 0.00 3.85
532 541 6.304126 CACGCTGTCTATTTGTTTATCGTTT 58.696 36.000 0.00 0.00 0.00 3.60
533 542 6.461698 CACGCTGTCTATTTGTTTATCGTTTC 59.538 38.462 0.00 0.00 0.00 2.78
534 543 5.957796 CGCTGTCTATTTGTTTATCGTTTCC 59.042 40.000 0.00 0.00 0.00 3.13
535 544 6.401688 CGCTGTCTATTTGTTTATCGTTTCCA 60.402 38.462 0.00 0.00 0.00 3.53
536 545 7.472543 GCTGTCTATTTGTTTATCGTTTCCAT 58.527 34.615 0.00 0.00 0.00 3.41
537 546 7.429340 GCTGTCTATTTGTTTATCGTTTCCATG 59.571 37.037 0.00 0.00 0.00 3.66
538 547 7.757526 TGTCTATTTGTTTATCGTTTCCATGG 58.242 34.615 4.97 4.97 0.00 3.66
539 548 7.148154 TGTCTATTTGTTTATCGTTTCCATGGG 60.148 37.037 13.02 0.00 0.00 4.00
540 549 4.792521 TTTGTTTATCGTTTCCATGGGG 57.207 40.909 13.02 0.00 0.00 4.96
541 550 3.722908 TGTTTATCGTTTCCATGGGGA 57.277 42.857 13.02 5.05 43.03 4.81
542 551 3.616219 TGTTTATCGTTTCCATGGGGAG 58.384 45.455 13.02 1.40 46.01 4.30
543 552 3.264706 TGTTTATCGTTTCCATGGGGAGA 59.735 43.478 13.02 7.22 46.01 3.71
544 553 4.080015 TGTTTATCGTTTCCATGGGGAGAT 60.080 41.667 13.02 13.76 46.01 2.75
545 554 2.938956 ATCGTTTCCATGGGGAGATC 57.061 50.000 13.02 0.00 46.01 2.75
546 555 1.879575 TCGTTTCCATGGGGAGATCT 58.120 50.000 13.02 0.00 46.01 2.75
547 556 1.486310 TCGTTTCCATGGGGAGATCTG 59.514 52.381 13.02 0.00 46.01 2.90
548 557 1.685148 GTTTCCATGGGGAGATCTGC 58.315 55.000 13.02 5.52 46.01 4.26
549 558 1.064463 GTTTCCATGGGGAGATCTGCA 60.064 52.381 16.72 0.00 46.01 4.41
550 559 1.297968 TTCCATGGGGAGATCTGCAA 58.702 50.000 16.72 3.91 46.01 4.08
551 560 0.548031 TCCATGGGGAGATCTGCAAC 59.452 55.000 16.72 8.75 38.64 4.17
552 561 0.816825 CCATGGGGAGATCTGCAACG 60.817 60.000 16.72 1.20 35.59 4.10
553 562 1.153086 ATGGGGAGATCTGCAACGC 60.153 57.895 16.72 2.17 0.00 4.84
554 563 2.514824 GGGGAGATCTGCAACGCC 60.515 66.667 16.72 7.95 0.00 5.68
555 564 2.268920 GGGAGATCTGCAACGCCA 59.731 61.111 16.72 0.00 0.00 5.69
556 565 1.377202 GGGAGATCTGCAACGCCAA 60.377 57.895 16.72 0.00 0.00 4.52
557 566 1.372087 GGGAGATCTGCAACGCCAAG 61.372 60.000 16.72 0.00 0.00 3.61
558 567 0.674895 GGAGATCTGCAACGCCAAGT 60.675 55.000 9.69 0.00 0.00 3.16
559 568 0.723981 GAGATCTGCAACGCCAAGTC 59.276 55.000 0.00 0.00 0.00 3.01
560 569 1.016130 AGATCTGCAACGCCAAGTCG 61.016 55.000 0.00 0.00 0.00 4.18
561 570 1.291877 GATCTGCAACGCCAAGTCGT 61.292 55.000 0.00 0.00 45.58 4.34
567 576 3.713963 ACGCCAAGTCGTTGTGTC 58.286 55.556 0.00 0.00 40.07 3.67
568 577 2.235016 ACGCCAAGTCGTTGTGTCG 61.235 57.895 0.00 0.00 40.07 4.35
569 578 2.248431 GCCAAGTCGTTGTGTCGC 59.752 61.111 0.00 0.00 30.95 5.19
570 579 2.544359 CCAAGTCGTTGTGTCGCG 59.456 61.111 0.00 0.00 30.95 5.87
571 580 2.544359 CAAGTCGTTGTGTCGCGG 59.456 61.111 6.13 0.00 0.00 6.46
572 581 3.335534 AAGTCGTTGTGTCGCGGC 61.336 61.111 2.29 2.29 0.00 6.53
587 596 4.267503 GGCCCGTCGATCTCCGTC 62.268 72.222 0.00 0.00 39.75 4.79
588 597 4.267503 GCCCGTCGATCTCCGTCC 62.268 72.222 0.00 0.00 39.75 4.79
589 598 3.950254 CCCGTCGATCTCCGTCCG 61.950 72.222 0.00 0.00 39.75 4.79
590 599 4.609247 CCGTCGATCTCCGTCCGC 62.609 72.222 0.00 0.00 39.75 5.54
591 600 4.939915 CGTCGATCTCCGTCCGCG 62.940 72.222 0.00 0.00 39.75 6.46
592 601 3.873883 GTCGATCTCCGTCCGCGT 61.874 66.667 4.92 0.00 39.75 6.01
593 602 3.872728 TCGATCTCCGTCCGCGTG 61.873 66.667 4.92 0.00 39.75 5.34
594 603 3.872728 CGATCTCCGTCCGCGTGA 61.873 66.667 4.92 0.00 36.15 4.35
595 604 2.722487 GATCTCCGTCCGCGTGAT 59.278 61.111 4.92 0.00 36.15 3.06
596 605 1.838568 CGATCTCCGTCCGCGTGATA 61.839 60.000 4.92 0.00 36.15 2.15
597 606 0.110147 GATCTCCGTCCGCGTGATAG 60.110 60.000 4.92 2.35 36.15 2.08
598 607 2.131294 ATCTCCGTCCGCGTGATAGC 62.131 60.000 4.92 0.00 36.15 2.97
599 608 3.120979 CTCCGTCCGCGTGATAGCA 62.121 63.158 4.92 0.00 36.85 3.49
600 609 2.655364 CCGTCCGCGTGATAGCAG 60.655 66.667 4.92 0.00 36.85 4.24
601 610 2.102357 CGTCCGCGTGATAGCAGT 59.898 61.111 4.92 0.00 36.85 4.40
602 611 1.939785 CGTCCGCGTGATAGCAGTC 60.940 63.158 4.92 0.00 36.85 3.51
603 612 1.939785 GTCCGCGTGATAGCAGTCG 60.940 63.158 4.92 0.00 36.85 4.18
604 613 2.655364 CCGCGTGATAGCAGTCGG 60.655 66.667 4.92 6.47 36.85 4.79
605 614 2.102357 CGCGTGATAGCAGTCGGT 59.898 61.111 0.00 0.00 36.85 4.69
606 615 1.516386 CGCGTGATAGCAGTCGGTT 60.516 57.895 0.00 0.00 36.85 4.44
607 616 1.076533 CGCGTGATAGCAGTCGGTTT 61.077 55.000 0.00 0.00 36.85 3.27
608 617 1.796253 CGCGTGATAGCAGTCGGTTTA 60.796 52.381 0.00 0.00 36.85 2.01
609 618 2.264813 GCGTGATAGCAGTCGGTTTAA 58.735 47.619 0.00 0.00 37.05 1.52
610 619 2.669434 GCGTGATAGCAGTCGGTTTAAA 59.331 45.455 0.00 0.00 37.05 1.52
611 620 3.123959 GCGTGATAGCAGTCGGTTTAAAA 59.876 43.478 0.00 0.00 37.05 1.52
612 621 4.377635 GCGTGATAGCAGTCGGTTTAAAAA 60.378 41.667 0.00 0.00 37.05 1.94
613 622 5.313623 CGTGATAGCAGTCGGTTTAAAAAG 58.686 41.667 0.00 0.00 0.00 2.27
614 623 5.119588 CGTGATAGCAGTCGGTTTAAAAAGA 59.880 40.000 0.00 0.00 0.00 2.52
615 624 6.534934 GTGATAGCAGTCGGTTTAAAAAGAG 58.465 40.000 0.00 0.00 0.00 2.85
616 625 5.642063 TGATAGCAGTCGGTTTAAAAAGAGG 59.358 40.000 0.00 0.00 0.00 3.69
617 626 4.081322 AGCAGTCGGTTTAAAAAGAGGA 57.919 40.909 0.00 0.00 0.00 3.71
618 627 4.065789 AGCAGTCGGTTTAAAAAGAGGAG 58.934 43.478 0.00 0.00 0.00 3.69
619 628 4.062991 GCAGTCGGTTTAAAAAGAGGAGA 58.937 43.478 0.00 0.00 0.00 3.71
620 629 4.695928 GCAGTCGGTTTAAAAAGAGGAGAT 59.304 41.667 0.00 0.00 0.00 2.75
621 630 5.181433 GCAGTCGGTTTAAAAAGAGGAGATT 59.819 40.000 0.00 0.00 0.00 2.40
622 631 6.370718 GCAGTCGGTTTAAAAAGAGGAGATTA 59.629 38.462 0.00 0.00 0.00 1.75
623 632 7.065923 GCAGTCGGTTTAAAAAGAGGAGATTAT 59.934 37.037 0.00 0.00 0.00 1.28
624 633 8.604890 CAGTCGGTTTAAAAAGAGGAGATTATC 58.395 37.037 0.00 0.00 0.00 1.75
754 765 4.332819 GGGACGAAATCATCACTACCTTTG 59.667 45.833 0.00 0.00 0.00 2.77
755 766 4.935808 GGACGAAATCATCACTACCTTTGT 59.064 41.667 0.00 0.00 0.00 2.83
756 767 5.063564 GGACGAAATCATCACTACCTTTGTC 59.936 44.000 0.00 0.00 0.00 3.18
757 768 5.794894 ACGAAATCATCACTACCTTTGTCT 58.205 37.500 0.00 0.00 0.00 3.41
758 769 5.639506 ACGAAATCATCACTACCTTTGTCTG 59.360 40.000 0.00 0.00 0.00 3.51
759 770 5.869344 CGAAATCATCACTACCTTTGTCTGA 59.131 40.000 0.00 0.00 0.00 3.27
760 771 6.368791 CGAAATCATCACTACCTTTGTCTGAA 59.631 38.462 0.00 0.00 0.00 3.02
972 1021 6.724694 GCTAATGAACATTTGCAATTTCCA 57.275 33.333 21.65 0.00 44.79 3.53
973 1022 6.768078 GCTAATGAACATTTGCAATTTCCAG 58.232 36.000 21.65 3.25 44.79 3.86
974 1023 6.369615 GCTAATGAACATTTGCAATTTCCAGT 59.630 34.615 21.65 0.00 44.79 4.00
975 1024 6.548441 AATGAACATTTGCAATTTCCAGTG 57.452 33.333 0.00 0.00 0.00 3.66
976 1025 5.273674 TGAACATTTGCAATTTCCAGTGA 57.726 34.783 0.00 0.00 0.00 3.41
977 1026 5.668471 TGAACATTTGCAATTTCCAGTGAA 58.332 33.333 0.00 0.00 0.00 3.18
978 1027 5.754406 TGAACATTTGCAATTTCCAGTGAAG 59.246 36.000 0.00 0.00 0.00 3.02
979 1028 4.060205 ACATTTGCAATTTCCAGTGAAGC 58.940 39.130 0.00 0.00 0.00 3.86
980 1029 4.202284 ACATTTGCAATTTCCAGTGAAGCT 60.202 37.500 0.00 0.00 0.00 3.74
981 1030 4.405116 TTTGCAATTTCCAGTGAAGCTT 57.595 36.364 0.00 0.00 0.00 3.74
982 1031 3.374220 TGCAATTTCCAGTGAAGCTTG 57.626 42.857 2.10 0.00 32.42 4.01
983 1032 2.036217 TGCAATTTCCAGTGAAGCTTGG 59.964 45.455 2.10 0.00 31.08 3.61
984 1033 2.680577 CAATTTCCAGTGAAGCTTGGC 58.319 47.619 2.10 0.00 0.00 4.52
985 1034 1.999648 ATTTCCAGTGAAGCTTGGCA 58.000 45.000 2.10 0.00 0.00 4.92
986 1035 1.999648 TTTCCAGTGAAGCTTGGCAT 58.000 45.000 2.10 0.00 0.00 4.40
987 1036 2.877097 TTCCAGTGAAGCTTGGCATA 57.123 45.000 2.10 0.00 0.00 3.14
988 1037 2.408271 TCCAGTGAAGCTTGGCATAG 57.592 50.000 2.10 0.00 0.00 2.23
989 1038 1.065199 TCCAGTGAAGCTTGGCATAGG 60.065 52.381 2.10 3.22 0.00 2.57
990 1039 1.340405 CCAGTGAAGCTTGGCATAGGT 60.340 52.381 2.10 0.00 0.00 3.08
991 1040 1.741706 CAGTGAAGCTTGGCATAGGTG 59.258 52.381 2.10 0.00 0.00 4.00
992 1041 1.098050 GTGAAGCTTGGCATAGGTGG 58.902 55.000 2.10 0.00 0.00 4.61
999 1048 3.210302 GGCATAGGTGGCTTTGGC 58.790 61.111 0.00 0.00 46.64 4.52
1000 1049 1.682005 GGCATAGGTGGCTTTGGCA 60.682 57.895 0.00 0.00 46.64 4.92
1001 1050 1.044790 GGCATAGGTGGCTTTGGCAT 61.045 55.000 0.00 0.00 46.64 4.40
1005 1054 1.505151 TAGGTGGCTTTGGCATGGGA 61.505 55.000 0.00 0.00 40.92 4.37
1008 1057 3.830192 GGCTTTGGCATGGGAGCG 61.830 66.667 0.00 0.00 40.87 5.03
1023 1072 1.156736 GAGCGGCCGTTGCATTATAT 58.843 50.000 28.70 0.00 40.13 0.86
1051 1100 2.696707 CAATGCTTTGCCATGGGTAGAT 59.303 45.455 15.13 0.00 0.00 1.98
1053 1102 2.378038 TGCTTTGCCATGGGTAGATTC 58.622 47.619 15.13 0.00 0.00 2.52
1054 1103 1.334869 GCTTTGCCATGGGTAGATTCG 59.665 52.381 15.13 0.00 0.00 3.34
1066 1115 4.202284 TGGGTAGATTCGCTAATGGGTTAC 60.202 45.833 0.00 0.00 0.00 2.50
1080 1129 1.601166 GGTTACCATACCCGCCAATC 58.399 55.000 0.00 0.00 31.71 2.67
1083 1132 0.470766 TACCATACCCGCCAATCACC 59.529 55.000 0.00 0.00 0.00 4.02
1151 1200 7.017056 AGGGTCTGAATCCTTAATATTCTGGAG 59.983 40.741 12.83 2.97 34.95 3.86
1399 1488 5.760253 ACTCATGTTAAGTTCCTTGTCAGTG 59.240 40.000 0.00 0.00 0.00 3.66
1453 1542 5.545335 TGCAGATGATCCTCAAGTACCATAT 59.455 40.000 0.62 0.00 0.00 1.78
1495 1584 1.000955 GAGTTTCTGCGAACCTCAGGA 59.999 52.381 0.00 0.00 32.63 3.86
1551 1641 9.807386 GTACTACAGTTGAACATACACAATTTC 57.193 33.333 0.00 0.00 0.00 2.17
1736 3818 8.115490 TGTAGTTTAGTACTCCCTCTGTAAAC 57.885 38.462 0.00 1.96 38.33 2.01
1837 5310 4.495690 TGGCAGTATTGTATGGCAGTAA 57.504 40.909 0.00 0.00 45.82 2.24
1838 5311 4.450976 TGGCAGTATTGTATGGCAGTAAG 58.549 43.478 0.00 0.00 45.82 2.34
1839 5312 4.080582 TGGCAGTATTGTATGGCAGTAAGT 60.081 41.667 0.00 0.00 45.82 2.24
1840 5313 5.129650 TGGCAGTATTGTATGGCAGTAAGTA 59.870 40.000 0.00 0.00 45.82 2.24
1841 5314 5.465724 GGCAGTATTGTATGGCAGTAAGTAC 59.534 44.000 0.00 0.00 41.35 2.73
1842 5315 6.281405 GCAGTATTGTATGGCAGTAAGTACT 58.719 40.000 0.00 0.00 36.90 2.73
1843 5316 7.431249 GCAGTATTGTATGGCAGTAAGTACTA 58.569 38.462 0.00 0.00 34.13 1.82
1844 5317 7.924412 GCAGTATTGTATGGCAGTAAGTACTAA 59.076 37.037 0.00 0.00 34.13 2.24
1845 5318 9.811995 CAGTATTGTATGGCAGTAAGTACTAAA 57.188 33.333 0.00 0.00 34.13 1.85
1849 5322 7.108841 TGTATGGCAGTAAGTACTAAAGAGG 57.891 40.000 0.00 0.00 34.13 3.69
1850 5323 6.893554 TGTATGGCAGTAAGTACTAAAGAGGA 59.106 38.462 0.00 0.00 34.13 3.71
1851 5324 7.563924 TGTATGGCAGTAAGTACTAAAGAGGAT 59.436 37.037 0.00 0.00 34.13 3.24
1852 5325 6.222038 TGGCAGTAAGTACTAAAGAGGATG 57.778 41.667 0.00 0.00 34.13 3.51
1853 5326 5.128827 TGGCAGTAAGTACTAAAGAGGATGG 59.871 44.000 0.00 0.00 34.13 3.51
1854 5327 5.051153 GCAGTAAGTACTAAAGAGGATGGC 58.949 45.833 0.00 0.00 34.13 4.40
1855 5328 5.395324 GCAGTAAGTACTAAAGAGGATGGCA 60.395 44.000 0.00 0.00 34.13 4.92
1856 5329 6.276847 CAGTAAGTACTAAAGAGGATGGCAG 58.723 44.000 0.00 0.00 34.13 4.85
1857 5330 3.828875 AGTACTAAAGAGGATGGCAGC 57.171 47.619 0.00 0.00 0.00 5.25
1858 5331 3.107601 AGTACTAAAGAGGATGGCAGCA 58.892 45.455 4.64 0.00 0.00 4.41
1859 5332 3.713764 AGTACTAAAGAGGATGGCAGCAT 59.286 43.478 4.64 0.00 0.00 3.79
1860 5333 3.659183 ACTAAAGAGGATGGCAGCATT 57.341 42.857 4.64 0.00 0.00 3.56
1861 5334 3.285484 ACTAAAGAGGATGGCAGCATTG 58.715 45.455 4.64 0.00 0.00 2.82
1862 5335 2.226962 AAAGAGGATGGCAGCATTGT 57.773 45.000 4.64 0.00 0.00 2.71
1863 5336 3.370840 AAAGAGGATGGCAGCATTGTA 57.629 42.857 4.64 0.00 0.00 2.41
1864 5337 3.589951 AAGAGGATGGCAGCATTGTAT 57.410 42.857 4.64 0.00 0.00 2.29
1865 5338 2.860009 AGAGGATGGCAGCATTGTATG 58.140 47.619 4.64 0.00 0.00 2.39
1866 5339 1.884579 GAGGATGGCAGCATTGTATGG 59.115 52.381 4.64 0.00 0.00 2.74
1867 5340 0.316204 GGATGGCAGCATTGTATGGC 59.684 55.000 4.64 9.59 42.01 4.40
1869 5342 2.495809 TGGCAGCATTGTATGGCAG 58.504 52.632 13.59 0.00 45.82 4.85
1870 5343 0.323633 TGGCAGCATTGTATGGCAGT 60.324 50.000 13.59 0.00 45.82 4.40
1871 5344 1.064832 TGGCAGCATTGTATGGCAGTA 60.065 47.619 13.59 0.00 45.82 2.74
1872 5345 2.023673 GGCAGCATTGTATGGCAGTAA 58.976 47.619 11.05 0.00 41.35 2.24
1873 5346 2.033801 GGCAGCATTGTATGGCAGTAAG 59.966 50.000 11.05 0.00 41.35 2.34
1874 5347 2.684881 GCAGCATTGTATGGCAGTAAGT 59.315 45.455 0.00 0.00 0.00 2.24
1875 5348 3.876914 GCAGCATTGTATGGCAGTAAGTA 59.123 43.478 0.00 0.00 0.00 2.24
1876 5349 4.260784 GCAGCATTGTATGGCAGTAAGTAC 60.261 45.833 0.00 0.00 0.00 2.73
1877 5350 5.118990 CAGCATTGTATGGCAGTAAGTACT 58.881 41.667 0.00 0.00 36.90 2.73
1878 5351 6.280643 CAGCATTGTATGGCAGTAAGTACTA 58.719 40.000 0.00 0.00 34.13 1.82
1879 5352 6.761242 CAGCATTGTATGGCAGTAAGTACTAA 59.239 38.462 0.00 0.00 34.13 2.24
1880 5353 7.279981 CAGCATTGTATGGCAGTAAGTACTAAA 59.720 37.037 0.00 0.00 34.13 1.85
1881 5354 7.495934 AGCATTGTATGGCAGTAAGTACTAAAG 59.504 37.037 0.00 0.00 34.13 1.85
1882 5355 7.494625 GCATTGTATGGCAGTAAGTACTAAAGA 59.505 37.037 0.00 0.00 34.13 2.52
1883 5356 9.035607 CATTGTATGGCAGTAAGTACTAAAGAG 57.964 37.037 0.00 0.00 34.13 2.85
1884 5357 7.108841 TGTATGGCAGTAAGTACTAAAGAGG 57.891 40.000 0.00 0.00 34.13 3.69
1885 5358 6.893554 TGTATGGCAGTAAGTACTAAAGAGGA 59.106 38.462 0.00 0.00 34.13 3.71
1886 5359 7.563924 TGTATGGCAGTAAGTACTAAAGAGGAT 59.436 37.037 0.00 0.00 34.13 3.24
1887 5360 6.222038 TGGCAGTAAGTACTAAAGAGGATG 57.778 41.667 0.00 0.00 34.13 3.51
1888 5361 5.128827 TGGCAGTAAGTACTAAAGAGGATGG 59.871 44.000 0.00 0.00 34.13 3.51
1889 5362 5.051153 GCAGTAAGTACTAAAGAGGATGGC 58.949 45.833 0.00 0.00 34.13 4.40
1890 5363 5.163395 GCAGTAAGTACTAAAGAGGATGGCT 60.163 44.000 0.00 0.00 34.13 4.75
1891 5364 6.276847 CAGTAAGTACTAAAGAGGATGGCTG 58.723 44.000 0.00 0.00 34.13 4.85
1892 5365 5.958987 AGTAAGTACTAAAGAGGATGGCTGT 59.041 40.000 0.00 0.00 34.13 4.40
1893 5366 7.068348 CAGTAAGTACTAAAGAGGATGGCTGTA 59.932 40.741 0.00 0.00 34.13 2.74
1894 5367 7.785506 AGTAAGTACTAAAGAGGATGGCTGTAT 59.214 37.037 0.00 0.00 34.13 2.29
1895 5368 7.439108 AAGTACTAAAGAGGATGGCTGTATT 57.561 36.000 0.00 0.00 0.00 1.89
1896 5369 6.821388 AGTACTAAAGAGGATGGCTGTATTG 58.179 40.000 0.00 0.00 0.00 1.90
1897 5370 5.700402 ACTAAAGAGGATGGCTGTATTGT 57.300 39.130 0.00 0.00 0.00 2.71
1898 5371 6.808321 ACTAAAGAGGATGGCTGTATTGTA 57.192 37.500 0.00 0.00 0.00 2.41
1899 5372 7.380423 ACTAAAGAGGATGGCTGTATTGTAT 57.620 36.000 0.00 0.00 0.00 2.29
1900 5373 7.220030 ACTAAAGAGGATGGCTGTATTGTATG 58.780 38.462 0.00 0.00 0.00 2.39
1901 5374 4.630644 AGAGGATGGCTGTATTGTATGG 57.369 45.455 0.00 0.00 0.00 2.74
1902 5375 3.077359 GAGGATGGCTGTATTGTATGGC 58.923 50.000 0.00 0.00 0.00 4.40
1903 5376 2.442878 AGGATGGCTGTATTGTATGGCA 59.557 45.455 0.00 0.00 39.22 4.92
1904 5377 2.816087 GGATGGCTGTATTGTATGGCAG 59.184 50.000 0.00 0.00 38.33 4.85
1905 5378 3.480470 GATGGCTGTATTGTATGGCAGT 58.520 45.455 0.00 0.00 38.33 4.40
1906 5379 4.504864 GGATGGCTGTATTGTATGGCAGTA 60.505 45.833 0.00 0.00 38.33 2.74
1907 5380 4.495690 TGGCTGTATTGTATGGCAGTAA 57.504 40.909 0.00 0.00 0.00 2.24
1908 5381 4.450976 TGGCTGTATTGTATGGCAGTAAG 58.549 43.478 0.00 0.00 0.00 2.34
1909 5382 4.080582 TGGCTGTATTGTATGGCAGTAAGT 60.081 41.667 0.00 0.00 0.00 2.24
1910 5383 5.129650 TGGCTGTATTGTATGGCAGTAAGTA 59.870 40.000 0.00 0.00 0.00 2.24
1911 5384 5.465724 GGCTGTATTGTATGGCAGTAAGTAC 59.534 44.000 0.00 0.00 0.00 2.73
1912 5385 6.281405 GCTGTATTGTATGGCAGTAAGTACT 58.719 40.000 0.00 0.00 36.90 2.73
1913 5386 7.431249 GCTGTATTGTATGGCAGTAAGTACTA 58.569 38.462 0.00 0.00 34.13 1.82
1914 5387 7.924412 GCTGTATTGTATGGCAGTAAGTACTAA 59.076 37.037 0.00 0.00 34.13 2.24
1915 5388 9.811995 CTGTATTGTATGGCAGTAAGTACTAAA 57.188 33.333 0.00 0.00 34.13 1.85
1916 5389 9.811995 TGTATTGTATGGCAGTAAGTACTAAAG 57.188 33.333 0.00 0.00 34.13 1.85
1919 5392 7.108841 TGTATGGCAGTAAGTACTAAAGAGG 57.891 40.000 0.00 0.00 34.13 3.69
1920 5393 6.893554 TGTATGGCAGTAAGTACTAAAGAGGA 59.106 38.462 0.00 0.00 34.13 3.71
1921 5394 7.563924 TGTATGGCAGTAAGTACTAAAGAGGAT 59.436 37.037 0.00 0.00 34.13 3.24
1922 5395 6.222038 TGGCAGTAAGTACTAAAGAGGATG 57.778 41.667 0.00 0.00 34.13 3.51
1923 5396 5.128827 TGGCAGTAAGTACTAAAGAGGATGG 59.871 44.000 0.00 0.00 34.13 3.51
1924 5397 5.051153 GCAGTAAGTACTAAAGAGGATGGC 58.949 45.833 0.00 0.00 34.13 4.40
1925 5398 5.282510 CAGTAAGTACTAAAGAGGATGGCG 58.717 45.833 0.00 0.00 34.13 5.69
1926 5399 3.821421 AAGTACTAAAGAGGATGGCGG 57.179 47.619 0.00 0.00 0.00 6.13
1927 5400 2.748388 AGTACTAAAGAGGATGGCGGT 58.252 47.619 0.00 0.00 0.00 5.68
1928 5401 3.907221 AGTACTAAAGAGGATGGCGGTA 58.093 45.455 0.00 0.00 0.00 4.02
1929 5402 4.481072 AGTACTAAAGAGGATGGCGGTAT 58.519 43.478 0.00 0.00 0.00 2.73
1930 5403 4.900054 AGTACTAAAGAGGATGGCGGTATT 59.100 41.667 0.00 0.00 0.00 1.89
1931 5404 4.073293 ACTAAAGAGGATGGCGGTATTG 57.927 45.455 0.00 0.00 0.00 1.90
1932 5405 3.454812 ACTAAAGAGGATGGCGGTATTGT 59.545 43.478 0.00 0.00 0.00 2.71
1933 5406 4.652421 ACTAAAGAGGATGGCGGTATTGTA 59.348 41.667 0.00 0.00 0.00 2.41
1934 5407 4.706842 AAAGAGGATGGCGGTATTGTAT 57.293 40.909 0.00 0.00 0.00 2.29
1935 5408 3.685139 AGAGGATGGCGGTATTGTATG 57.315 47.619 0.00 0.00 0.00 2.39
1936 5409 2.303022 AGAGGATGGCGGTATTGTATGG 59.697 50.000 0.00 0.00 0.00 2.74
1937 5410 1.165270 GGATGGCGGTATTGTATGGC 58.835 55.000 0.00 0.00 0.00 4.40
1938 5411 1.544537 GGATGGCGGTATTGTATGGCA 60.545 52.381 0.00 0.00 41.33 4.92
1939 5412 1.806542 GATGGCGGTATTGTATGGCAG 59.193 52.381 0.00 0.00 40.38 4.85
1940 5413 0.544223 TGGCGGTATTGTATGGCAGT 59.456 50.000 0.00 0.00 32.71 4.40
1941 5414 1.763545 TGGCGGTATTGTATGGCAGTA 59.236 47.619 0.00 0.00 32.71 2.74
2051 5559 1.285962 ACAGTGCTATGCCTTGGGAAT 59.714 47.619 0.00 0.00 0.00 3.01
2057 5565 6.265196 CAGTGCTATGCCTTGGGAATATTTTA 59.735 38.462 0.00 0.00 0.00 1.52
2141 5649 7.119387 CCTTCACAGGGTCTTAATCCTTAATT 58.881 38.462 0.00 0.00 36.36 1.40
2142 5650 7.067494 CCTTCACAGGGTCTTAATCCTTAATTG 59.933 40.741 0.00 0.00 36.36 2.32
2143 5651 6.423182 TCACAGGGTCTTAATCCTTAATTGG 58.577 40.000 0.00 0.00 0.00 3.16
2144 5652 6.216662 TCACAGGGTCTTAATCCTTAATTGGA 59.783 38.462 0.00 0.00 40.82 3.53
2187 5701 8.575649 AATCTAAGGTAATTGACGGTTCAAAT 57.424 30.769 0.00 0.00 45.01 2.32
2222 5736 2.301870 TGGGTATGATAACTGATCCGGC 59.698 50.000 0.00 0.00 33.07 6.13
2232 5746 0.946221 CTGATCCGGCGCATCTTACC 60.946 60.000 12.62 0.00 0.00 2.85
2267 5781 5.066593 GTCAAGAGCCCCATTATTAAGAGG 58.933 45.833 0.00 0.00 0.00 3.69
2285 5799 0.676782 GGCACGCCCAACATCTACTT 60.677 55.000 0.00 0.00 0.00 2.24
2286 5800 0.727398 GCACGCCCAACATCTACTTC 59.273 55.000 0.00 0.00 0.00 3.01
2287 5801 1.943968 GCACGCCCAACATCTACTTCA 60.944 52.381 0.00 0.00 0.00 3.02
2288 5802 2.422597 CACGCCCAACATCTACTTCAA 58.577 47.619 0.00 0.00 0.00 2.69
2311 5825 8.328758 TCAATCAAACATACTAAGGTGGATTCT 58.671 33.333 0.00 0.00 27.96 2.40
2353 5867 3.041211 TGGTTCTCCTGAGGATGGTATG 58.959 50.000 0.00 0.00 34.23 2.39
2405 5919 4.647564 AGGTTTGAGTCCAATGATGAGT 57.352 40.909 0.00 0.00 31.46 3.41
2478 5992 1.012841 GCATGAAAGCGGAGAAGGAG 58.987 55.000 0.00 0.00 0.00 3.69
2480 5994 0.908198 ATGAAAGCGGAGAAGGAGCT 59.092 50.000 0.00 0.00 43.90 4.09
2481 5995 1.557099 TGAAAGCGGAGAAGGAGCTA 58.443 50.000 0.00 0.00 40.78 3.32
2524 6040 0.676466 GCATCAACGGGTGTCCATGA 60.676 55.000 0.00 0.00 34.40 3.07
2542 6058 5.011943 TCCATGAAAAAGGCTACAAGCAATT 59.988 36.000 0.00 0.00 44.75 2.32
2543 6059 6.210385 TCCATGAAAAAGGCTACAAGCAATTA 59.790 34.615 0.00 0.00 44.75 1.40
2545 6061 7.550196 CCATGAAAAAGGCTACAAGCAATTAAT 59.450 33.333 0.00 0.00 44.75 1.40
2573 6089 4.155462 CCTGAAATGATCTCCGGCAATATG 59.845 45.833 0.00 0.00 0.00 1.78
2623 6139 9.561069 TCTTTCAAGTTCCTAATTATATCCTGC 57.439 33.333 0.00 0.00 0.00 4.85
2664 6185 4.458989 ACGATATGCCTTTGTGTTCATGTT 59.541 37.500 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.863454 GATAACTGATGAGGCTGTGCG 59.137 52.381 0.00 0.00 0.00 5.34
4 5 2.910199 TGATAACTGATGAGGCTGTGC 58.090 47.619 0.00 0.00 0.00 4.57
5 6 5.121105 TGAATGATAACTGATGAGGCTGTG 58.879 41.667 0.00 0.00 0.00 3.66
6 7 5.363562 TGAATGATAACTGATGAGGCTGT 57.636 39.130 0.00 0.00 0.00 4.40
7 8 6.294010 CCAATGAATGATAACTGATGAGGCTG 60.294 42.308 0.00 0.00 0.00 4.85
8 9 5.768662 CCAATGAATGATAACTGATGAGGCT 59.231 40.000 0.00 0.00 0.00 4.58
9 10 5.533903 ACCAATGAATGATAACTGATGAGGC 59.466 40.000 0.00 0.00 0.00 4.70
10 11 7.283807 TCAACCAATGAATGATAACTGATGAGG 59.716 37.037 0.00 0.00 34.30 3.86
11 12 8.217131 TCAACCAATGAATGATAACTGATGAG 57.783 34.615 0.00 0.00 34.30 2.90
12 13 8.756486 ATCAACCAATGAATGATAACTGATGA 57.244 30.769 0.05 0.00 42.54 2.92
13 14 7.801783 CGATCAACCAATGAATGATAACTGATG 59.198 37.037 0.00 0.00 42.54 3.07
14 15 7.716560 TCGATCAACCAATGAATGATAACTGAT 59.283 33.333 0.00 0.00 42.54 2.90
15 16 7.047271 TCGATCAACCAATGAATGATAACTGA 58.953 34.615 0.00 0.00 42.54 3.41
16 17 7.250445 TCGATCAACCAATGAATGATAACTG 57.750 36.000 0.00 0.00 42.54 3.16
17 18 7.935755 AGATCGATCAACCAATGAATGATAACT 59.064 33.333 26.47 0.00 42.54 2.24
18 19 8.013947 CAGATCGATCAACCAATGAATGATAAC 58.986 37.037 26.47 0.00 42.54 1.89
149 156 3.292481 TTCTCGGGCCTACCTCGGT 62.292 63.158 0.84 0.00 36.97 4.69
167 174 1.379443 TGTCTATCCGCCGTCCACT 60.379 57.895 0.00 0.00 0.00 4.00
183 190 1.685421 GAGCTGGGAGAGAGGCTGT 60.685 63.158 0.00 0.00 35.01 4.40
197 204 2.434336 TGTGCCCGTGATTTATAGAGCT 59.566 45.455 0.00 0.00 0.00 4.09
250 258 4.203226 TCGAGTTCATATGCTCTCTGACT 58.797 43.478 18.00 6.53 0.00 3.41
254 263 3.320256 TGCATCGAGTTCATATGCTCTCT 59.680 43.478 18.00 6.85 44.96 3.10
262 271 3.503827 ACGAAGTGCATCGAGTTCATA 57.496 42.857 16.17 0.00 45.48 2.15
273 282 2.035832 TGATCTCACTCAACGAAGTGCA 59.964 45.455 10.94 0.00 45.00 4.57
275 284 4.488879 TGATGATCTCACTCAACGAAGTG 58.511 43.478 9.91 9.91 45.00 3.16
311 320 2.334946 GCATTCGCAGTTGCCTCCA 61.335 57.895 0.00 0.00 38.36 3.86
337 346 3.071167 GGAGATAATTTACCCTCCGCAGT 59.929 47.826 9.59 0.00 36.26 4.40
364 373 1.676529 CGAACGCAGAGATTAGGAGGA 59.323 52.381 0.00 0.00 0.00 3.71
371 380 2.948979 AGAGAGATCGAACGCAGAGATT 59.051 45.455 0.00 0.00 0.00 2.40
374 383 1.400142 ACAGAGAGATCGAACGCAGAG 59.600 52.381 0.00 0.00 0.00 3.35
392 401 4.330944 TGAGAAAGAAGGCGTAAAGACA 57.669 40.909 0.00 0.00 0.00 3.41
393 402 4.083961 GGTTGAGAAAGAAGGCGTAAAGAC 60.084 45.833 0.00 0.00 0.00 3.01
440 449 1.937196 ATTCGTTCGTGCGTGCGTAC 61.937 55.000 2.83 2.83 0.00 3.67
441 450 1.667349 GATTCGTTCGTGCGTGCGTA 61.667 55.000 9.23 0.00 0.00 4.42
442 451 2.995450 GATTCGTTCGTGCGTGCGT 61.995 57.895 9.23 0.00 0.00 5.24
444 453 1.225475 CAGATTCGTTCGTGCGTGC 60.225 57.895 1.99 0.00 0.00 5.34
445 454 1.225475 GCAGATTCGTTCGTGCGTG 60.225 57.895 1.99 0.00 0.00 5.34
446 455 0.944311 AAGCAGATTCGTTCGTGCGT 60.944 50.000 0.00 0.00 40.97 5.24
447 456 0.163788 AAAGCAGATTCGTTCGTGCG 59.836 50.000 0.00 0.00 40.97 5.34
448 457 1.595609 CAAAGCAGATTCGTTCGTGC 58.404 50.000 0.00 0.00 36.10 5.34
450 459 2.069273 CTCCAAAGCAGATTCGTTCGT 58.931 47.619 0.00 0.00 0.00 3.85
451 460 2.337583 TCTCCAAAGCAGATTCGTTCG 58.662 47.619 0.00 0.00 0.00 3.95
452 461 2.675348 CCTCTCCAAAGCAGATTCGTTC 59.325 50.000 0.00 0.00 0.00 3.95
453 462 2.616510 CCCTCTCCAAAGCAGATTCGTT 60.617 50.000 0.00 0.00 0.00 3.85
454 463 1.065854 CCCTCTCCAAAGCAGATTCGT 60.066 52.381 0.00 0.00 0.00 3.85
456 465 1.409381 CCCCCTCTCCAAAGCAGATTC 60.409 57.143 0.00 0.00 0.00 2.52
457 466 0.627986 CCCCCTCTCCAAAGCAGATT 59.372 55.000 0.00 0.00 0.00 2.40
459 468 0.475632 TTCCCCCTCTCCAAAGCAGA 60.476 55.000 0.00 0.00 0.00 4.26
461 470 0.856982 TTTTCCCCCTCTCCAAAGCA 59.143 50.000 0.00 0.00 0.00 3.91
462 471 1.895798 CTTTTTCCCCCTCTCCAAAGC 59.104 52.381 0.00 0.00 0.00 3.51
464 473 2.148702 TCCTTTTTCCCCCTCTCCAAA 58.851 47.619 0.00 0.00 0.00 3.28
466 475 1.073098 GTCCTTTTTCCCCCTCTCCA 58.927 55.000 0.00 0.00 0.00 3.86
467 476 0.331954 GGTCCTTTTTCCCCCTCTCC 59.668 60.000 0.00 0.00 0.00 3.71
468 477 1.282447 GAGGTCCTTTTTCCCCCTCTC 59.718 57.143 0.00 0.00 38.90 3.20
469 478 1.132036 AGAGGTCCTTTTTCCCCCTCT 60.132 52.381 0.00 0.00 45.56 3.69
471 480 1.711375 GAAGAGGTCCTTTTTCCCCCT 59.289 52.381 0.00 0.00 34.68 4.79
472 481 1.711375 AGAAGAGGTCCTTTTTCCCCC 59.289 52.381 11.49 0.00 34.68 5.40
473 482 2.645297 AGAGAAGAGGTCCTTTTTCCCC 59.355 50.000 11.49 6.35 34.68 4.81
474 483 3.328050 TCAGAGAAGAGGTCCTTTTTCCC 59.672 47.826 11.49 3.09 34.68 3.97
475 484 4.284746 TCTCAGAGAAGAGGTCCTTTTTCC 59.715 45.833 0.00 5.85 36.30 3.13
476 485 5.476091 TCTCAGAGAAGAGGTCCTTTTTC 57.524 43.478 0.00 0.83 36.30 2.29
477 486 6.156083 CCTATCTCAGAGAAGAGGTCCTTTTT 59.844 42.308 18.22 0.00 36.30 1.94
479 488 5.208121 CCTATCTCAGAGAAGAGGTCCTTT 58.792 45.833 18.22 0.00 36.30 3.11
480 489 4.231890 ACCTATCTCAGAGAAGAGGTCCTT 59.768 45.833 23.38 8.43 39.21 3.36
481 490 3.791545 ACCTATCTCAGAGAAGAGGTCCT 59.208 47.826 23.38 8.70 39.21 3.85
482 491 4.142038 GACCTATCTCAGAGAAGAGGTCC 58.858 52.174 32.68 22.75 45.94 4.46
484 493 4.532834 GTGACCTATCTCAGAGAAGAGGT 58.467 47.826 26.91 26.91 43.39 3.85
486 495 3.003275 GCGTGACCTATCTCAGAGAAGAG 59.997 52.174 3.63 5.04 36.97 2.85
489 498 2.423892 GTGCGTGACCTATCTCAGAGAA 59.576 50.000 3.63 0.00 0.00 2.87
490 499 2.017782 GTGCGTGACCTATCTCAGAGA 58.982 52.381 1.54 1.54 0.00 3.10
491 500 1.268285 CGTGCGTGACCTATCTCAGAG 60.268 57.143 0.00 0.00 0.00 3.35
493 502 0.867753 GCGTGCGTGACCTATCTCAG 60.868 60.000 0.00 0.00 0.00 3.35
495 504 0.867753 CAGCGTGCGTGACCTATCTC 60.868 60.000 0.00 0.00 0.00 2.75
497 506 1.140407 GACAGCGTGCGTGACCTATC 61.140 60.000 0.00 0.00 0.00 2.08
499 508 0.956902 TAGACAGCGTGCGTGACCTA 60.957 55.000 0.00 0.00 0.00 3.08
501 510 0.736325 AATAGACAGCGTGCGTGACC 60.736 55.000 0.00 0.00 0.00 4.02
502 511 1.068474 AAATAGACAGCGTGCGTGAC 58.932 50.000 0.00 0.00 0.00 3.67
503 512 1.067693 CAAATAGACAGCGTGCGTGA 58.932 50.000 0.00 0.00 0.00 4.35
504 513 0.790207 ACAAATAGACAGCGTGCGTG 59.210 50.000 0.00 0.00 0.00 5.34
505 514 1.508632 AACAAATAGACAGCGTGCGT 58.491 45.000 0.00 0.00 0.00 5.24
509 518 6.401796 GGAAACGATAAACAAATAGACAGCGT 60.402 38.462 0.00 0.00 0.00 5.07
510 519 5.957796 GGAAACGATAAACAAATAGACAGCG 59.042 40.000 0.00 0.00 0.00 5.18
511 520 6.837992 TGGAAACGATAAACAAATAGACAGC 58.162 36.000 0.00 0.00 0.00 4.40
512 521 7.910162 CCATGGAAACGATAAACAAATAGACAG 59.090 37.037 5.56 0.00 0.00 3.51
513 522 7.148154 CCCATGGAAACGATAAACAAATAGACA 60.148 37.037 15.22 0.00 0.00 3.41
514 523 7.193595 CCCATGGAAACGATAAACAAATAGAC 58.806 38.462 15.22 0.00 0.00 2.59
515 524 6.320164 CCCCATGGAAACGATAAACAAATAGA 59.680 38.462 15.22 0.00 0.00 1.98
516 525 6.320164 TCCCCATGGAAACGATAAACAAATAG 59.680 38.462 15.22 0.00 37.86 1.73
517 526 6.188407 TCCCCATGGAAACGATAAACAAATA 58.812 36.000 15.22 0.00 37.86 1.40
518 527 5.020132 TCCCCATGGAAACGATAAACAAAT 58.980 37.500 15.22 0.00 37.86 2.32
519 528 4.408276 TCCCCATGGAAACGATAAACAAA 58.592 39.130 15.22 0.00 37.86 2.83
520 529 4.013728 CTCCCCATGGAAACGATAAACAA 58.986 43.478 15.22 0.00 41.17 2.83
521 530 3.264706 TCTCCCCATGGAAACGATAAACA 59.735 43.478 15.22 0.00 41.17 2.83
522 531 3.881220 TCTCCCCATGGAAACGATAAAC 58.119 45.455 15.22 0.00 41.17 2.01
523 532 4.412199 AGATCTCCCCATGGAAACGATAAA 59.588 41.667 15.22 0.00 41.17 1.40
524 533 3.973973 AGATCTCCCCATGGAAACGATAA 59.026 43.478 15.22 0.00 41.17 1.75
525 534 3.324846 CAGATCTCCCCATGGAAACGATA 59.675 47.826 15.22 0.00 41.17 2.92
526 535 2.105477 CAGATCTCCCCATGGAAACGAT 59.895 50.000 15.22 9.28 41.17 3.73
527 536 1.486310 CAGATCTCCCCATGGAAACGA 59.514 52.381 15.22 4.34 41.17 3.85
528 537 1.959042 CAGATCTCCCCATGGAAACG 58.041 55.000 15.22 0.00 41.17 3.60
529 538 1.064463 TGCAGATCTCCCCATGGAAAC 60.064 52.381 15.22 0.00 41.17 2.78
530 539 1.297968 TGCAGATCTCCCCATGGAAA 58.702 50.000 15.22 0.00 41.17 3.13
531 540 1.064463 GTTGCAGATCTCCCCATGGAA 60.064 52.381 15.22 0.00 41.17 3.53
532 541 0.548031 GTTGCAGATCTCCCCATGGA 59.452 55.000 15.22 0.00 38.75 3.41
533 542 0.816825 CGTTGCAGATCTCCCCATGG 60.817 60.000 4.14 4.14 0.00 3.66
534 543 1.442526 GCGTTGCAGATCTCCCCATG 61.443 60.000 0.00 0.00 0.00 3.66
535 544 1.153086 GCGTTGCAGATCTCCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
536 545 2.268920 GCGTTGCAGATCTCCCCA 59.731 61.111 0.00 0.00 0.00 4.96
537 546 2.514824 GGCGTTGCAGATCTCCCC 60.515 66.667 0.00 0.00 0.00 4.81
538 547 1.372087 CTTGGCGTTGCAGATCTCCC 61.372 60.000 0.00 0.00 0.00 4.30
539 548 0.674895 ACTTGGCGTTGCAGATCTCC 60.675 55.000 0.00 0.00 0.00 3.71
540 549 0.723981 GACTTGGCGTTGCAGATCTC 59.276 55.000 0.00 0.00 0.00 2.75
541 550 1.016130 CGACTTGGCGTTGCAGATCT 61.016 55.000 0.00 0.00 0.00 2.75
542 551 1.291877 ACGACTTGGCGTTGCAGATC 61.292 55.000 0.00 0.00 42.71 2.75
543 552 1.301716 ACGACTTGGCGTTGCAGAT 60.302 52.632 0.00 0.00 42.71 2.90
544 553 2.108157 ACGACTTGGCGTTGCAGA 59.892 55.556 0.00 0.00 42.71 4.26
551 560 2.544359 CGACACAACGACTTGGCG 59.456 61.111 0.00 0.00 35.09 5.69
552 561 2.248431 GCGACACAACGACTTGGC 59.752 61.111 0.00 0.00 35.09 4.52
553 562 2.544359 CGCGACACAACGACTTGG 59.456 61.111 0.00 0.00 35.09 3.61
554 563 2.544359 CCGCGACACAACGACTTG 59.456 61.111 8.23 0.00 35.09 3.16
555 564 3.335534 GCCGCGACACAACGACTT 61.336 61.111 8.23 0.00 35.09 3.01
570 579 4.267503 GACGGAGATCGACGGGCC 62.268 72.222 14.83 0.00 42.43 5.80
571 580 4.267503 GGACGGAGATCGACGGGC 62.268 72.222 14.83 7.26 42.43 6.13
572 581 3.950254 CGGACGGAGATCGACGGG 61.950 72.222 14.83 2.56 42.43 5.28
573 582 4.609247 GCGGACGGAGATCGACGG 62.609 72.222 14.83 7.70 42.43 4.79
574 583 4.939915 CGCGGACGGAGATCGACG 62.940 72.222 0.00 9.96 42.43 5.12
575 584 3.873883 ACGCGGACGGAGATCGAC 61.874 66.667 12.47 0.00 46.04 4.20
576 585 3.872728 CACGCGGACGGAGATCGA 61.873 66.667 12.47 0.00 46.04 3.59
577 586 1.838568 TATCACGCGGACGGAGATCG 61.839 60.000 12.47 0.00 46.04 3.69
578 587 0.110147 CTATCACGCGGACGGAGATC 60.110 60.000 12.47 0.00 46.04 2.75
579 588 1.950007 CTATCACGCGGACGGAGAT 59.050 57.895 12.47 6.38 46.04 2.75
580 589 2.831366 GCTATCACGCGGACGGAGA 61.831 63.158 12.47 0.00 46.04 3.71
581 590 2.353607 GCTATCACGCGGACGGAG 60.354 66.667 12.47 1.67 46.04 4.63
582 591 3.120979 CTGCTATCACGCGGACGGA 62.121 63.158 12.47 2.34 46.04 4.69
583 592 2.655364 CTGCTATCACGCGGACGG 60.655 66.667 12.47 2.97 46.04 4.79
585 594 1.939785 CGACTGCTATCACGCGGAC 60.940 63.158 12.47 0.00 39.56 4.79
586 595 2.407616 CGACTGCTATCACGCGGA 59.592 61.111 12.47 5.24 39.56 5.54
587 596 2.655364 CCGACTGCTATCACGCGG 60.655 66.667 12.47 0.00 42.00 6.46
588 597 1.076533 AAACCGACTGCTATCACGCG 61.077 55.000 3.53 3.53 0.00 6.01
589 598 1.917273 TAAACCGACTGCTATCACGC 58.083 50.000 0.00 0.00 0.00 5.34
590 599 4.914312 TTTTAAACCGACTGCTATCACG 57.086 40.909 0.00 0.00 0.00 4.35
591 600 6.402226 CCTCTTTTTAAACCGACTGCTATCAC 60.402 42.308 0.00 0.00 0.00 3.06
592 601 5.642063 CCTCTTTTTAAACCGACTGCTATCA 59.358 40.000 0.00 0.00 0.00 2.15
593 602 5.873164 TCCTCTTTTTAAACCGACTGCTATC 59.127 40.000 0.00 0.00 0.00 2.08
594 603 5.801380 TCCTCTTTTTAAACCGACTGCTAT 58.199 37.500 0.00 0.00 0.00 2.97
595 604 5.011329 TCTCCTCTTTTTAAACCGACTGCTA 59.989 40.000 0.00 0.00 0.00 3.49
596 605 4.065789 CTCCTCTTTTTAAACCGACTGCT 58.934 43.478 0.00 0.00 0.00 4.24
597 606 4.062991 TCTCCTCTTTTTAAACCGACTGC 58.937 43.478 0.00 0.00 0.00 4.40
598 607 6.803154 AATCTCCTCTTTTTAAACCGACTG 57.197 37.500 0.00 0.00 0.00 3.51
599 608 7.769507 GGATAATCTCCTCTTTTTAAACCGACT 59.230 37.037 0.00 0.00 41.29 4.18
600 609 7.917597 GGATAATCTCCTCTTTTTAAACCGAC 58.082 38.462 0.00 0.00 41.29 4.79
754 765 4.550422 GAGCCCTGTTCAATTTTTCAGAC 58.450 43.478 0.00 0.00 0.00 3.51
755 766 3.253188 CGAGCCCTGTTCAATTTTTCAGA 59.747 43.478 0.00 0.00 0.00 3.27
756 767 3.253188 TCGAGCCCTGTTCAATTTTTCAG 59.747 43.478 0.00 0.00 0.00 3.02
757 768 3.218453 TCGAGCCCTGTTCAATTTTTCA 58.782 40.909 0.00 0.00 0.00 2.69
758 769 3.915437 TCGAGCCCTGTTCAATTTTTC 57.085 42.857 0.00 0.00 0.00 2.29
759 770 3.573967 ACATCGAGCCCTGTTCAATTTTT 59.426 39.130 0.00 0.00 0.00 1.94
760 771 3.057315 CACATCGAGCCCTGTTCAATTTT 60.057 43.478 0.00 0.00 0.00 1.82
787 798 4.550831 CGTACAATGAGTCAATGAATCGCC 60.551 45.833 15.15 0.00 28.49 5.54
788 799 4.508971 CGTACAATGAGTCAATGAATCGC 58.491 43.478 15.15 0.04 28.49 4.58
941 954 8.830201 TTGCAAATGTTCATTAGCATTAGTTT 57.170 26.923 0.00 0.00 34.61 2.66
961 1010 3.493002 CCAAGCTTCACTGGAAATTGCAA 60.493 43.478 0.00 0.00 32.46 4.08
962 1011 2.036217 CCAAGCTTCACTGGAAATTGCA 59.964 45.455 0.00 0.00 32.46 4.08
963 1012 2.680577 CCAAGCTTCACTGGAAATTGC 58.319 47.619 0.00 0.00 32.46 3.56
964 1013 2.036217 TGCCAAGCTTCACTGGAAATTG 59.964 45.455 6.34 0.00 33.08 2.32
965 1014 2.318908 TGCCAAGCTTCACTGGAAATT 58.681 42.857 6.34 0.00 31.35 1.82
966 1015 1.999648 TGCCAAGCTTCACTGGAAAT 58.000 45.000 6.34 0.00 31.35 2.17
967 1016 1.999648 ATGCCAAGCTTCACTGGAAA 58.000 45.000 6.34 0.00 31.35 3.13
968 1017 2.618816 CCTATGCCAAGCTTCACTGGAA 60.619 50.000 6.34 0.00 0.00 3.53
969 1018 1.065199 CCTATGCCAAGCTTCACTGGA 60.065 52.381 6.34 0.00 0.00 3.86
970 1019 1.340405 ACCTATGCCAAGCTTCACTGG 60.340 52.381 0.00 0.00 0.00 4.00
971 1020 1.741706 CACCTATGCCAAGCTTCACTG 59.258 52.381 0.00 0.00 0.00 3.66
972 1021 1.340405 CCACCTATGCCAAGCTTCACT 60.340 52.381 0.00 0.00 0.00 3.41
973 1022 1.098050 CCACCTATGCCAAGCTTCAC 58.902 55.000 0.00 0.00 0.00 3.18
974 1023 0.680921 GCCACCTATGCCAAGCTTCA 60.681 55.000 0.00 0.00 0.00 3.02
975 1024 0.394899 AGCCACCTATGCCAAGCTTC 60.395 55.000 0.00 0.00 0.00 3.86
976 1025 0.040204 AAGCCACCTATGCCAAGCTT 59.960 50.000 0.00 0.00 35.82 3.74
977 1026 0.040204 AAAGCCACCTATGCCAAGCT 59.960 50.000 0.00 0.00 0.00 3.74
978 1027 0.174162 CAAAGCCACCTATGCCAAGC 59.826 55.000 0.00 0.00 0.00 4.01
979 1028 0.819582 CCAAAGCCACCTATGCCAAG 59.180 55.000 0.00 0.00 0.00 3.61
980 1029 1.257055 GCCAAAGCCACCTATGCCAA 61.257 55.000 0.00 0.00 0.00 4.52
981 1030 1.682005 GCCAAAGCCACCTATGCCA 60.682 57.895 0.00 0.00 0.00 4.92
982 1031 1.044790 ATGCCAAAGCCACCTATGCC 61.045 55.000 0.00 0.00 38.69 4.40
983 1032 0.103572 CATGCCAAAGCCACCTATGC 59.896 55.000 0.00 0.00 38.69 3.14
984 1033 0.748450 CCATGCCAAAGCCACCTATG 59.252 55.000 0.00 0.00 38.69 2.23
985 1034 0.397535 CCCATGCCAAAGCCACCTAT 60.398 55.000 0.00 0.00 38.69 2.57
986 1035 1.000233 CCCATGCCAAAGCCACCTA 60.000 57.895 0.00 0.00 38.69 3.08
987 1036 2.284112 CCCATGCCAAAGCCACCT 60.284 61.111 0.00 0.00 38.69 4.00
988 1037 2.283821 TCCCATGCCAAAGCCACC 60.284 61.111 0.00 0.00 38.69 4.61
989 1038 3.010413 GCTCCCATGCCAAAGCCAC 62.010 63.158 0.00 0.00 38.69 5.01
990 1039 2.681064 GCTCCCATGCCAAAGCCA 60.681 61.111 0.00 0.00 38.69 4.75
991 1040 3.830192 CGCTCCCATGCCAAAGCC 61.830 66.667 0.00 0.00 38.69 4.35
992 1041 3.830192 CCGCTCCCATGCCAAAGC 61.830 66.667 0.00 0.00 40.48 3.51
993 1042 3.830192 GCCGCTCCCATGCCAAAG 61.830 66.667 0.00 0.00 0.00 2.77
1005 1054 1.535462 GAATATAATGCAACGGCCGCT 59.465 47.619 28.58 11.40 40.13 5.52
1008 1057 2.351738 GGCAGAATATAATGCAACGGCC 60.352 50.000 12.61 0.00 44.37 6.13
1066 1115 1.528309 GGGTGATTGGCGGGTATGG 60.528 63.158 0.00 0.00 0.00 2.74
1072 1121 4.664062 ATCAAGGGTGATTGGCGG 57.336 55.556 0.00 0.00 42.03 6.13
1080 1129 3.324556 ACCCAATCACAAAATCAAGGGTG 59.675 43.478 0.00 0.00 46.03 4.61
1083 1132 5.639082 GCTAAACCCAATCACAAAATCAAGG 59.361 40.000 0.00 0.00 0.00 3.61
1095 1144 2.004808 GCCAGCCGCTAAACCCAATC 62.005 60.000 0.00 0.00 0.00 2.67
1097 1146 2.675075 GCCAGCCGCTAAACCCAA 60.675 61.111 0.00 0.00 0.00 4.12
1215 1272 4.695455 CAGGGTCATGAACAATACGAGTTT 59.305 41.667 13.90 0.00 0.00 2.66
1218 1275 4.123497 TCAGGGTCATGAACAATACGAG 57.877 45.455 13.90 0.00 0.00 4.18
1219 1276 4.221924 TCTTCAGGGTCATGAACAATACGA 59.778 41.667 13.90 0.11 35.40 3.43
1223 1280 3.245016 TGCTCTTCAGGGTCATGAACAAT 60.245 43.478 13.90 0.00 35.40 2.71
1495 1584 8.477419 TGAAGGTTCTAAAATCCACTGAAAAT 57.523 30.769 0.00 0.00 0.00 1.82
1551 1641 7.731882 ATATGAGAGCAAATGATCAGTGAAG 57.268 36.000 12.25 0.59 31.88 3.02
1837 5310 3.107601 TGCTGCCATCCTCTTTAGTACT 58.892 45.455 0.00 0.00 0.00 2.73
1838 5311 3.543680 TGCTGCCATCCTCTTTAGTAC 57.456 47.619 0.00 0.00 0.00 2.73
1839 5312 4.080356 ACAATGCTGCCATCCTCTTTAGTA 60.080 41.667 0.00 0.00 0.00 1.82
1840 5313 3.285484 CAATGCTGCCATCCTCTTTAGT 58.715 45.455 0.00 0.00 0.00 2.24
1841 5314 3.285484 ACAATGCTGCCATCCTCTTTAG 58.715 45.455 0.00 0.00 0.00 1.85
1842 5315 3.370840 ACAATGCTGCCATCCTCTTTA 57.629 42.857 0.00 0.00 0.00 1.85
1843 5316 2.226962 ACAATGCTGCCATCCTCTTT 57.773 45.000 0.00 0.00 0.00 2.52
1844 5317 3.220110 CATACAATGCTGCCATCCTCTT 58.780 45.455 0.00 0.00 0.00 2.85
1845 5318 2.488528 CCATACAATGCTGCCATCCTCT 60.489 50.000 0.00 0.00 0.00 3.69
1846 5319 1.884579 CCATACAATGCTGCCATCCTC 59.115 52.381 0.00 0.00 0.00 3.71
1847 5320 1.991121 CCATACAATGCTGCCATCCT 58.009 50.000 0.00 0.00 0.00 3.24
1848 5321 0.316204 GCCATACAATGCTGCCATCC 59.684 55.000 0.00 0.00 0.00 3.51
1849 5322 1.000607 CTGCCATACAATGCTGCCATC 60.001 52.381 0.00 0.00 0.00 3.51
1850 5323 1.037493 CTGCCATACAATGCTGCCAT 58.963 50.000 0.00 0.00 0.00 4.40
1851 5324 0.323633 ACTGCCATACAATGCTGCCA 60.324 50.000 0.00 0.00 0.00 4.92
1852 5325 1.679139 TACTGCCATACAATGCTGCC 58.321 50.000 0.00 0.00 0.00 4.85
1853 5326 2.684881 ACTTACTGCCATACAATGCTGC 59.315 45.455 0.00 0.00 0.00 5.25
1854 5327 5.118990 AGTACTTACTGCCATACAATGCTG 58.881 41.667 0.00 0.00 34.72 4.41
1855 5328 5.359194 AGTACTTACTGCCATACAATGCT 57.641 39.130 0.00 0.00 34.72 3.79
1856 5329 7.494625 TCTTTAGTACTTACTGCCATACAATGC 59.505 37.037 0.00 0.00 37.10 3.56
1857 5330 8.942338 TCTTTAGTACTTACTGCCATACAATG 57.058 34.615 0.00 0.00 37.10 2.82
1858 5331 8.204836 CCTCTTTAGTACTTACTGCCATACAAT 58.795 37.037 0.00 0.00 37.10 2.71
1859 5332 7.398047 TCCTCTTTAGTACTTACTGCCATACAA 59.602 37.037 0.00 0.00 37.10 2.41
1860 5333 6.893554 TCCTCTTTAGTACTTACTGCCATACA 59.106 38.462 0.00 0.00 37.10 2.29
1861 5334 7.344095 TCCTCTTTAGTACTTACTGCCATAC 57.656 40.000 0.00 0.00 37.10 2.39
1862 5335 7.015292 CCATCCTCTTTAGTACTTACTGCCATA 59.985 40.741 0.00 0.00 37.10 2.74
1863 5336 6.183361 CCATCCTCTTTAGTACTTACTGCCAT 60.183 42.308 0.00 0.00 37.10 4.40
1864 5337 5.128827 CCATCCTCTTTAGTACTTACTGCCA 59.871 44.000 0.00 0.00 37.10 4.92
1865 5338 5.602628 CCATCCTCTTTAGTACTTACTGCC 58.397 45.833 0.00 0.00 37.10 4.85
1866 5339 5.051153 GCCATCCTCTTTAGTACTTACTGC 58.949 45.833 0.00 0.00 37.10 4.40
1867 5340 6.127310 ACAGCCATCCTCTTTAGTACTTACTG 60.127 42.308 0.00 0.00 37.10 2.74
1868 5341 5.958987 ACAGCCATCCTCTTTAGTACTTACT 59.041 40.000 0.00 0.00 40.24 2.24
1869 5342 6.223351 ACAGCCATCCTCTTTAGTACTTAC 57.777 41.667 0.00 0.00 0.00 2.34
1870 5343 8.421784 CAATACAGCCATCCTCTTTAGTACTTA 58.578 37.037 0.00 0.00 0.00 2.24
1871 5344 7.092846 ACAATACAGCCATCCTCTTTAGTACTT 60.093 37.037 0.00 0.00 0.00 2.24
1872 5345 6.384305 ACAATACAGCCATCCTCTTTAGTACT 59.616 38.462 0.00 0.00 0.00 2.73
1873 5346 6.583562 ACAATACAGCCATCCTCTTTAGTAC 58.416 40.000 0.00 0.00 0.00 2.73
1874 5347 6.808321 ACAATACAGCCATCCTCTTTAGTA 57.192 37.500 0.00 0.00 0.00 1.82
1875 5348 5.700402 ACAATACAGCCATCCTCTTTAGT 57.300 39.130 0.00 0.00 0.00 2.24
1876 5349 6.652481 CCATACAATACAGCCATCCTCTTTAG 59.348 42.308 0.00 0.00 0.00 1.85
1877 5350 6.533730 CCATACAATACAGCCATCCTCTTTA 58.466 40.000 0.00 0.00 0.00 1.85
1878 5351 5.380043 CCATACAATACAGCCATCCTCTTT 58.620 41.667 0.00 0.00 0.00 2.52
1879 5352 4.747931 GCCATACAATACAGCCATCCTCTT 60.748 45.833 0.00 0.00 0.00 2.85
1880 5353 3.244700 GCCATACAATACAGCCATCCTCT 60.245 47.826 0.00 0.00 0.00 3.69
1881 5354 3.077359 GCCATACAATACAGCCATCCTC 58.923 50.000 0.00 0.00 0.00 3.71
1882 5355 2.442878 TGCCATACAATACAGCCATCCT 59.557 45.455 0.00 0.00 0.00 3.24
1883 5356 2.816087 CTGCCATACAATACAGCCATCC 59.184 50.000 0.00 0.00 0.00 3.51
1884 5357 3.480470 ACTGCCATACAATACAGCCATC 58.520 45.455 0.00 0.00 33.35 3.51
1885 5358 3.582998 ACTGCCATACAATACAGCCAT 57.417 42.857 0.00 0.00 33.35 4.40
1886 5359 4.080582 ACTTACTGCCATACAATACAGCCA 60.081 41.667 0.00 0.00 33.35 4.75
1887 5360 4.451900 ACTTACTGCCATACAATACAGCC 58.548 43.478 0.00 0.00 33.35 4.85
1888 5361 6.281405 AGTACTTACTGCCATACAATACAGC 58.719 40.000 0.00 0.00 34.72 4.40
1889 5362 9.811995 TTTAGTACTTACTGCCATACAATACAG 57.188 33.333 0.00 0.00 37.10 2.74
1890 5363 9.811995 CTTTAGTACTTACTGCCATACAATACA 57.188 33.333 0.00 0.00 37.10 2.29
1893 5366 8.204836 CCTCTTTAGTACTTACTGCCATACAAT 58.795 37.037 0.00 0.00 37.10 2.71
1894 5367 7.398047 TCCTCTTTAGTACTTACTGCCATACAA 59.602 37.037 0.00 0.00 37.10 2.41
1895 5368 6.893554 TCCTCTTTAGTACTTACTGCCATACA 59.106 38.462 0.00 0.00 37.10 2.29
1896 5369 7.344095 TCCTCTTTAGTACTTACTGCCATAC 57.656 40.000 0.00 0.00 37.10 2.39
1897 5370 7.015292 CCATCCTCTTTAGTACTTACTGCCATA 59.985 40.741 0.00 0.00 37.10 2.74
1898 5371 6.183361 CCATCCTCTTTAGTACTTACTGCCAT 60.183 42.308 0.00 0.00 37.10 4.40
1899 5372 5.128827 CCATCCTCTTTAGTACTTACTGCCA 59.871 44.000 0.00 0.00 37.10 4.92
1900 5373 5.602628 CCATCCTCTTTAGTACTTACTGCC 58.397 45.833 0.00 0.00 37.10 4.85
1901 5374 5.051153 GCCATCCTCTTTAGTACTTACTGC 58.949 45.833 0.00 0.00 37.10 4.40
1902 5375 5.282510 CGCCATCCTCTTTAGTACTTACTG 58.717 45.833 0.00 0.00 37.10 2.74
1903 5376 4.341520 CCGCCATCCTCTTTAGTACTTACT 59.658 45.833 0.00 0.00 40.24 2.24
1904 5377 4.099113 ACCGCCATCCTCTTTAGTACTTAC 59.901 45.833 0.00 0.00 0.00 2.34
1905 5378 4.284178 ACCGCCATCCTCTTTAGTACTTA 58.716 43.478 0.00 0.00 0.00 2.24
1906 5379 3.105283 ACCGCCATCCTCTTTAGTACTT 58.895 45.455 0.00 0.00 0.00 2.24
1907 5380 2.748388 ACCGCCATCCTCTTTAGTACT 58.252 47.619 0.00 0.00 0.00 2.73
1908 5381 4.868314 ATACCGCCATCCTCTTTAGTAC 57.132 45.455 0.00 0.00 0.00 2.73
1909 5382 4.652421 ACAATACCGCCATCCTCTTTAGTA 59.348 41.667 0.00 0.00 0.00 1.82
1910 5383 3.454812 ACAATACCGCCATCCTCTTTAGT 59.545 43.478 0.00 0.00 0.00 2.24
1911 5384 4.073293 ACAATACCGCCATCCTCTTTAG 57.927 45.455 0.00 0.00 0.00 1.85
1912 5385 5.512404 CCATACAATACCGCCATCCTCTTTA 60.512 44.000 0.00 0.00 0.00 1.85
1913 5386 4.389374 CATACAATACCGCCATCCTCTTT 58.611 43.478 0.00 0.00 0.00 2.52
1914 5387 3.244561 CCATACAATACCGCCATCCTCTT 60.245 47.826 0.00 0.00 0.00 2.85
1915 5388 2.303022 CCATACAATACCGCCATCCTCT 59.697 50.000 0.00 0.00 0.00 3.69
1916 5389 2.699954 CCATACAATACCGCCATCCTC 58.300 52.381 0.00 0.00 0.00 3.71
1917 5390 1.271379 GCCATACAATACCGCCATCCT 60.271 52.381 0.00 0.00 0.00 3.24
1918 5391 1.165270 GCCATACAATACCGCCATCC 58.835 55.000 0.00 0.00 0.00 3.51
1919 5392 1.806542 CTGCCATACAATACCGCCATC 59.193 52.381 0.00 0.00 0.00 3.51
1920 5393 1.142870 ACTGCCATACAATACCGCCAT 59.857 47.619 0.00 0.00 0.00 4.40
1921 5394 0.544223 ACTGCCATACAATACCGCCA 59.456 50.000 0.00 0.00 0.00 5.69
1922 5395 2.536761 TACTGCCATACAATACCGCC 57.463 50.000 0.00 0.00 0.00 6.13
1923 5396 3.463944 ACTTACTGCCATACAATACCGC 58.536 45.455 0.00 0.00 0.00 5.68
1924 5397 5.839621 AGTACTTACTGCCATACAATACCG 58.160 41.667 0.00 0.00 34.72 4.02
1925 5398 9.257651 CTTTAGTACTTACTGCCATACAATACC 57.742 37.037 0.00 0.00 37.10 2.73
1928 5401 8.204836 CCTCTTTAGTACTTACTGCCATACAAT 58.795 37.037 0.00 0.00 37.10 2.71
1929 5402 7.398047 TCCTCTTTAGTACTTACTGCCATACAA 59.602 37.037 0.00 0.00 37.10 2.41
1930 5403 6.893554 TCCTCTTTAGTACTTACTGCCATACA 59.106 38.462 0.00 0.00 37.10 2.29
1931 5404 7.344095 TCCTCTTTAGTACTTACTGCCATAC 57.656 40.000 0.00 0.00 37.10 2.39
1932 5405 7.783119 TCATCCTCTTTAGTACTTACTGCCATA 59.217 37.037 0.00 0.00 37.10 2.74
1933 5406 6.611642 TCATCCTCTTTAGTACTTACTGCCAT 59.388 38.462 0.00 0.00 37.10 4.40
1934 5407 5.955959 TCATCCTCTTTAGTACTTACTGCCA 59.044 40.000 0.00 0.00 37.10 4.92
1935 5408 6.466885 TCATCCTCTTTAGTACTTACTGCC 57.533 41.667 0.00 0.00 37.10 4.85
1936 5409 7.321153 TGTTCATCCTCTTTAGTACTTACTGC 58.679 38.462 0.00 0.00 37.10 4.40
1937 5410 9.877178 AATGTTCATCCTCTTTAGTACTTACTG 57.123 33.333 0.00 0.00 37.10 2.74
1940 5413 9.162764 GCAAATGTTCATCCTCTTTAGTACTTA 57.837 33.333 0.00 0.00 0.00 2.24
1941 5414 7.665559 TGCAAATGTTCATCCTCTTTAGTACTT 59.334 33.333 0.00 0.00 0.00 2.24
2057 5565 9.330220 AGGGTAATCGGTATGGTAACTAATTAT 57.670 33.333 0.00 0.00 37.61 1.28
2062 5570 4.834496 CCAGGGTAATCGGTATGGTAACTA 59.166 45.833 0.00 0.00 37.61 2.24
2063 5571 3.644738 CCAGGGTAATCGGTATGGTAACT 59.355 47.826 0.00 0.00 37.61 2.24
2143 5651 9.565213 CTTAGATTTTGTCACTGGATTCAAATC 57.435 33.333 0.00 0.00 31.86 2.17
2144 5652 8.526147 CCTTAGATTTTGTCACTGGATTCAAAT 58.474 33.333 0.00 0.00 31.45 2.32
2146 5654 7.004086 ACCTTAGATTTTGTCACTGGATTCAA 58.996 34.615 0.00 0.00 0.00 2.69
2147 5655 6.542821 ACCTTAGATTTTGTCACTGGATTCA 58.457 36.000 0.00 0.00 0.00 2.57
2148 5656 8.561738 TTACCTTAGATTTTGTCACTGGATTC 57.438 34.615 0.00 0.00 0.00 2.52
2209 5723 0.681733 AGATGCGCCGGATCAGTTAT 59.318 50.000 20.71 0.00 0.00 1.89
2222 5736 1.121240 GATGACGTCGGTAAGATGCG 58.879 55.000 11.62 0.00 39.47 4.73
2232 5746 1.585668 GCTCTTGACATGATGACGTCG 59.414 52.381 11.62 0.00 34.78 5.12
2267 5781 0.727398 GAAGTAGATGTTGGGCGTGC 59.273 55.000 0.00 0.00 0.00 5.34
2285 5799 8.328758 AGAATCCACCTTAGTATGTTTGATTGA 58.671 33.333 0.00 0.00 0.00 2.57
2286 5800 8.511604 AGAATCCACCTTAGTATGTTTGATTG 57.488 34.615 0.00 0.00 0.00 2.67
2311 5825 6.112734 ACCAAGAAGACATGCATTAACGATA 58.887 36.000 0.00 0.00 0.00 2.92
2353 5867 5.220529 GCAAATGGCATGAAAATCAAGTAGC 60.221 40.000 0.00 0.00 43.97 3.58
2405 5919 2.972713 GGATAACCTCCTCTATGGCACA 59.027 50.000 0.00 0.00 42.07 4.57
2478 5992 4.093556 CGGAACCTTGTCTTCATCTTTAGC 59.906 45.833 0.00 0.00 0.00 3.09
2480 5994 4.000988 GCGGAACCTTGTCTTCATCTTTA 58.999 43.478 0.00 0.00 0.00 1.85
2481 5995 2.814336 GCGGAACCTTGTCTTCATCTTT 59.186 45.455 0.00 0.00 0.00 2.52
2542 6058 4.139786 GGAGATCATTTCAGGCTGCATTA 58.860 43.478 10.34 0.00 0.00 1.90
2543 6059 2.957006 GGAGATCATTTCAGGCTGCATT 59.043 45.455 10.34 0.00 0.00 3.56
2545 6061 1.744798 CGGAGATCATTTCAGGCTGCA 60.745 52.381 10.34 0.00 0.00 4.41
2550 6066 2.042686 TTGCCGGAGATCATTTCAGG 57.957 50.000 5.05 0.00 33.67 3.86
2551 6067 4.155462 CCATATTGCCGGAGATCATTTCAG 59.845 45.833 5.05 0.00 0.00 3.02
2552 6068 4.074259 CCATATTGCCGGAGATCATTTCA 58.926 43.478 5.05 0.00 0.00 2.69
2553 6069 3.119708 GCCATATTGCCGGAGATCATTTC 60.120 47.826 5.05 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.