Multiple sequence alignment - TraesCS3B01G192400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G192400 chr3B 100.000 5639 0 0 1 5639 206197985 206192347 0.000000e+00 10414.0
1 TraesCS3B01G192400 chr3B 89.362 47 2 3 5372 5416 414276862 414276907 7.890000e-04 56.5
2 TraesCS3B01G192400 chr3A 95.150 2866 95 17 2441 5301 162763696 162760870 0.000000e+00 4482.0
3 TraesCS3B01G192400 chr3A 92.037 2072 78 34 429 2456 162765755 162763727 0.000000e+00 2832.0
4 TraesCS3B01G192400 chr3A 86.392 316 38 4 1 313 162766942 162766629 1.950000e-89 340.0
5 TraesCS3B01G192400 chr3A 80.000 120 21 3 180 298 720453651 720453768 1.010000e-12 86.1
6 TraesCS3B01G192400 chr3D 95.232 2475 77 13 2441 4912 143146667 143144231 0.000000e+00 3879.0
7 TraesCS3B01G192400 chr3D 91.647 2095 97 33 391 2449 143148756 143146704 0.000000e+00 2828.0
8 TraesCS3B01G192400 chr3D 87.657 397 41 5 1 391 143149289 143148895 6.660000e-124 455.0
9 TraesCS3B01G192400 chr3D 95.652 46 2 0 4953 4998 143144227 143144182 2.180000e-09 75.0
10 TraesCS3B01G192400 chr1B 96.891 193 4 2 5449 5639 331592499 331592307 7.050000e-84 322.0
11 TraesCS3B01G192400 chr1B 85.185 108 11 5 193 298 581112224 581112328 7.730000e-19 106.0
12 TraesCS3B01G192400 chr2B 94.086 186 11 0 5445 5630 491049420 491049235 3.330000e-72 283.0
13 TraesCS3B01G192400 chr7B 93.956 182 11 0 5449 5630 119631483 119631664 5.570000e-70 276.0
14 TraesCS3B01G192400 chr1D 93.443 183 12 0 5449 5631 162054761 162054943 7.200000e-69 272.0
15 TraesCS3B01G192400 chr1D 92.308 182 14 0 5449 5630 54923889 54924070 5.600000e-65 259.0
16 TraesCS3B01G192400 chr1D 82.474 97 13 3 195 290 166402121 166402214 1.300000e-11 82.4
17 TraesCS3B01G192400 chr5D 92.818 181 13 0 5449 5629 465086929 465087109 4.330000e-66 263.0
18 TraesCS3B01G192400 chr4D 92.391 184 13 1 5447 5630 502883167 502883349 1.560000e-65 261.0
19 TraesCS3B01G192400 chr4D 86.441 59 8 0 5373 5431 500844726 500844668 1.310000e-06 65.8
20 TraesCS3B01G192400 chr6D 92.778 180 12 1 5449 5628 223625201 223625379 5.600000e-65 259.0
21 TraesCS3B01G192400 chr5A 91.979 187 12 1 5449 5635 587546330 587546513 5.600000e-65 259.0
22 TraesCS3B01G192400 chr5A 78.226 124 21 5 169 290 161648750 161648869 2.180000e-09 75.0
23 TraesCS3B01G192400 chr7D 81.034 116 16 5 173 286 61033054 61033165 2.800000e-13 87.9
24 TraesCS3B01G192400 chr7A 81.132 106 14 5 195 298 449332312 449332211 4.680000e-11 80.5
25 TraesCS3B01G192400 chr4B 79.661 118 19 4 175 290 147040657 147040543 4.680000e-11 80.5
26 TraesCS3B01G192400 chr2A 88.136 59 5 2 5382 5439 103830786 103830729 1.010000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G192400 chr3B 206192347 206197985 5638 True 10414.000000 10414 100.000 1 5639 1 chr3B.!!$R1 5638
1 TraesCS3B01G192400 chr3A 162760870 162766942 6072 True 2551.333333 4482 91.193 1 5301 3 chr3A.!!$R1 5300
2 TraesCS3B01G192400 chr3D 143144182 143149289 5107 True 1809.250000 3879 92.547 1 4998 4 chr3D.!!$R1 4997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 171 0.313672 GCCAATGGTTCACGCAGAAA 59.686 50.000 0.00 0.0 38.13 2.52 F
688 1469 0.605319 CGGCCACTACTTTCCAAGCA 60.605 55.000 2.24 0.0 0.00 3.91 F
1533 2335 1.069227 GTGGGAGTGCGCTTTTAACAG 60.069 52.381 9.73 0.0 0.00 3.16 F
2094 2924 0.257039 ATGGTCCTCAGTTGATGGGC 59.743 55.000 0.00 0.0 0.00 5.36 F
2248 3078 0.531657 GCCACTGCCATGTTTATGCA 59.468 50.000 0.00 0.0 32.79 3.96 F
2557 3484 1.278699 CTCCTGAAGCTGCTCTTTCCT 59.721 52.381 1.00 0.0 34.56 3.36 F
3389 4319 2.159240 TGCTCTAGTTGTCTGCATACCG 60.159 50.000 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 2483 0.176680 ACCGCAAGATCGATCAAGCT 59.823 50.000 27.98 15.31 43.02 3.74 R
1842 2671 0.366871 CGCTGATCTTCACCGTTTCG 59.633 55.000 0.00 0.00 0.00 3.46 R
3473 4409 1.522668 TCTGCAAGGTTGGTCATTCG 58.477 50.000 0.00 0.00 0.00 3.34 R
3788 4724 8.252417 CAGATGAACCATCAAAAATGGAATGTA 58.748 33.333 10.91 0.00 42.72 2.29 R
4120 5057 7.569639 TCTTAGCTTTGATGTACGAGTAGAT 57.430 36.000 0.00 0.00 0.00 1.98 R
4249 5186 4.215399 TCAGTGTTGCCAAAGCTGTATAAC 59.785 41.667 8.66 0.00 40.80 1.89 R
5185 6124 0.106015 AAGGGGCATGGTTGGATAGC 60.106 55.000 0.00 0.00 0.00 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.476053 AGAAACGTTCTCCTATCGCTAATTTC 59.524 38.462 0.00 0.00 34.07 2.17
39 40 5.507482 CGTTCTCCTATCGCTAATTTCCTGA 60.507 44.000 0.00 0.00 0.00 3.86
41 42 5.141182 TCTCCTATCGCTAATTTCCTGACT 58.859 41.667 0.00 0.00 0.00 3.41
42 43 6.304624 TCTCCTATCGCTAATTTCCTGACTA 58.695 40.000 0.00 0.00 0.00 2.59
71 74 2.483877 CAGATTACGCAAGCCAAGTTCA 59.516 45.455 0.00 0.00 45.62 3.18
80 83 2.226962 AGCCAAGTTCAATGCCATCT 57.773 45.000 0.00 0.00 0.00 2.90
83 86 2.613691 CCAAGTTCAATGCCATCTTGC 58.386 47.619 0.00 0.00 35.58 4.01
94 97 1.268899 GCCATCTTGCAGCATGATACC 59.731 52.381 20.41 12.11 39.69 2.73
144 147 3.001736 GTGATTGAATAGAGCTGGAACGC 59.998 47.826 0.00 0.00 0.00 4.84
146 149 2.760634 TGAATAGAGCTGGAACGCAA 57.239 45.000 0.00 0.00 0.00 4.85
153 156 1.006337 GCTGGAACGCAATTGCCAA 60.006 52.632 24.24 3.48 37.91 4.52
168 171 0.313672 GCCAATGGTTCACGCAGAAA 59.686 50.000 0.00 0.00 38.13 2.52
177 180 4.278170 TGGTTCACGCAGAAATCAATTCTT 59.722 37.500 0.00 0.00 46.39 2.52
209 212 5.117584 TCAGGTCAAGCACGTTTAACTTTA 58.882 37.500 0.00 0.00 0.00 1.85
213 216 5.220912 GGTCAAGCACGTTTAACTTTAAGGT 60.221 40.000 0.00 0.00 0.00 3.50
340 543 8.719560 TTTTTCCCTAACAAAAATGTTGGTAC 57.280 30.769 4.55 0.00 33.59 3.34
395 744 1.321016 CTTGTTGCTTGAATCACGCG 58.679 50.000 3.53 3.53 31.06 6.01
408 757 7.045804 GCTTGAATCACGCGTATTTACTTTTAC 60.046 37.037 13.44 0.00 0.00 2.01
494 1275 2.931512 TAAAGCGGCCAAAATGCTAC 57.068 45.000 2.24 0.00 38.17 3.58
499 1280 1.134946 GCGGCCAAAATGCTACATTCT 59.865 47.619 2.24 0.00 0.00 2.40
501 1282 2.423185 CGGCCAAAATGCTACATTCTGA 59.577 45.455 2.24 0.00 0.00 3.27
555 1336 4.082081 CAGCAAAATGTCCCATAGCTTTCA 60.082 41.667 0.00 0.00 0.00 2.69
556 1337 4.159135 AGCAAAATGTCCCATAGCTTTCAG 59.841 41.667 0.00 0.00 0.00 3.02
606 1387 9.760660 CGAGCTAACAATAATAGGCATAAAATC 57.239 33.333 0.00 0.00 0.00 2.17
612 1393 9.872757 AACAATAATAGGCATAAAATCGTTACG 57.127 29.630 0.00 0.00 0.00 3.18
620 1401 5.025826 GCATAAAATCGTTACGTTTCCCAG 58.974 41.667 4.24 0.00 0.00 4.45
622 1403 2.172851 AATCGTTACGTTTCCCAGCA 57.827 45.000 4.24 0.00 0.00 4.41
688 1469 0.605319 CGGCCACTACTTTCCAAGCA 60.605 55.000 2.24 0.00 0.00 3.91
1224 2024 2.676822 AAGAGGCTCACGCTCCGA 60.677 61.111 18.26 0.00 36.09 4.55
1287 2087 1.513586 CTAACGCCACGTCTCGACC 60.514 63.158 12.22 0.00 39.99 4.79
1452 2254 3.259314 TCCCACCTGCAGCCACAT 61.259 61.111 8.66 0.00 0.00 3.21
1533 2335 1.069227 GTGGGAGTGCGCTTTTAACAG 60.069 52.381 9.73 0.00 0.00 3.16
1565 2367 3.144657 TCTGATGACTGTGGTTGCAAT 57.855 42.857 0.59 0.00 0.00 3.56
1655 2457 1.868251 GTACGTTCTCGCTGCCTCG 60.868 63.158 0.00 0.00 41.18 4.63
1692 2513 3.600235 CGTTTAGCTTGATCGATCTTGCG 60.600 47.826 25.02 13.74 33.45 4.85
1698 2519 2.602257 TGATCGATCTTGCGGTGATT 57.398 45.000 25.02 0.00 0.00 2.57
1703 2524 4.857871 TCGATCTTGCGGTGATTTTTAG 57.142 40.909 0.00 0.00 0.00 1.85
1712 2533 4.757657 TGCGGTGATTTTTAGTCAGCTAAA 59.242 37.500 0.00 0.00 43.23 1.85
1714 2535 6.596106 TGCGGTGATTTTTAGTCAGCTAAATA 59.404 34.615 0.00 0.00 44.02 1.40
1773 2594 5.586243 CCTGAACGTCATATTCAACATCCTT 59.414 40.000 0.00 0.00 35.70 3.36
1819 2640 3.778629 CCCCTACCCATAGTAAGTGTGTT 59.221 47.826 0.00 0.00 0.00 3.32
1820 2641 4.226620 CCCCTACCCATAGTAAGTGTGTTT 59.773 45.833 0.00 0.00 0.00 2.83
1822 2643 5.646360 CCCTACCCATAGTAAGTGTGTTTTG 59.354 44.000 0.00 0.00 0.00 2.44
1849 2678 2.116366 CTTGCCTTTGTTTCGAAACGG 58.884 47.619 30.05 25.79 41.74 4.44
1865 2694 2.586792 GGTGAAGATCAGCGGCCT 59.413 61.111 0.00 0.00 35.04 5.19
1866 2695 1.522580 GGTGAAGATCAGCGGCCTC 60.523 63.158 0.00 0.00 35.04 4.70
1867 2696 1.219124 GTGAAGATCAGCGGCCTCA 59.781 57.895 0.00 0.00 0.00 3.86
1868 2697 1.086634 GTGAAGATCAGCGGCCTCAC 61.087 60.000 0.00 0.84 0.00 3.51
1869 2698 1.260538 TGAAGATCAGCGGCCTCACT 61.261 55.000 0.00 0.00 0.00 3.41
1870 2699 0.809241 GAAGATCAGCGGCCTCACTG 60.809 60.000 0.00 6.04 35.15 3.66
1871 2700 1.260538 AAGATCAGCGGCCTCACTGA 61.261 55.000 18.71 18.71 46.34 3.41
1872 2701 3.639445 ATCAGCGGCCTCACTGAT 58.361 55.556 20.91 20.91 46.03 2.90
1873 2702 2.895680 TCAGCGGCCTCACTGATC 59.104 61.111 14.07 0.00 37.99 2.92
1874 2703 1.683707 TCAGCGGCCTCACTGATCT 60.684 57.895 14.07 0.00 37.99 2.75
1875 2704 1.220206 CAGCGGCCTCACTGATCTT 59.780 57.895 10.85 0.00 35.90 2.40
1876 2705 1.088340 CAGCGGCCTCACTGATCTTG 61.088 60.000 10.85 0.00 35.90 3.02
1877 2706 2.467826 GCGGCCTCACTGATCTTGC 61.468 63.158 0.00 0.00 0.00 4.01
1878 2707 1.220206 CGGCCTCACTGATCTTGCT 59.780 57.895 0.00 0.00 0.00 3.91
1879 2708 0.392193 CGGCCTCACTGATCTTGCTT 60.392 55.000 0.00 0.00 0.00 3.91
1880 2709 1.831580 GGCCTCACTGATCTTGCTTT 58.168 50.000 0.00 0.00 0.00 3.51
1881 2710 1.742268 GGCCTCACTGATCTTGCTTTC 59.258 52.381 0.00 0.00 0.00 2.62
1882 2711 2.430465 GCCTCACTGATCTTGCTTTCA 58.570 47.619 0.00 0.00 0.00 2.69
1883 2712 2.419324 GCCTCACTGATCTTGCTTTCAG 59.581 50.000 0.00 0.00 43.97 3.02
1890 2719 5.686159 CTGATCTTGCTTTCAGTTCTTGT 57.314 39.130 0.00 0.00 35.66 3.16
1891 2720 6.069684 CTGATCTTGCTTTCAGTTCTTGTT 57.930 37.500 0.00 0.00 35.66 2.83
1892 2721 6.064846 TGATCTTGCTTTCAGTTCTTGTTC 57.935 37.500 0.00 0.00 0.00 3.18
1896 2725 3.884895 TGCTTTCAGTTCTTGTTCCTGA 58.115 40.909 0.00 0.00 33.59 3.86
1944 2774 2.915738 CTGATTGCAGCTTTGTCTCC 57.084 50.000 0.00 0.00 34.95 3.71
1995 2825 4.154347 CTCCTCAGCTGGGCCGTC 62.154 72.222 15.13 0.00 0.00 4.79
2021 2851 1.355796 CCGAAGCGTGCGGTAATTCA 61.356 55.000 6.75 0.00 43.66 2.57
2037 2867 5.163824 GGTAATTCAAACCGCCTTACTGTAC 60.164 44.000 0.00 0.00 0.00 2.90
2038 2868 3.756933 TTCAAACCGCCTTACTGTACT 57.243 42.857 0.00 0.00 0.00 2.73
2064 2894 7.869937 TGTTGTGTTTTCTTTGAGAATTCACAA 59.130 29.630 22.16 22.16 44.88 3.33
2094 2924 0.257039 ATGGTCCTCAGTTGATGGGC 59.743 55.000 0.00 0.00 0.00 5.36
2111 2941 5.074929 TGATGGGCCTCCTGTAAATTCATAT 59.925 40.000 4.53 0.00 0.00 1.78
2123 2953 7.226720 CCTGTAAATTCATATAAGTTCAGCGGT 59.773 37.037 0.00 0.00 0.00 5.68
2130 2960 3.963428 ATAAGTTCAGCGGTCTCACTT 57.037 42.857 7.52 7.52 31.28 3.16
2205 3035 9.120538 TGATAGGCTTCCTGTAAATTTCATTAC 57.879 33.333 0.00 0.00 34.61 1.89
2245 3075 4.472496 TCATATGCCACTGCCATGTTTAT 58.528 39.130 0.00 0.00 36.33 1.40
2248 3078 0.531657 GCCACTGCCATGTTTATGCA 59.468 50.000 0.00 0.00 32.79 3.96
2268 3098 4.856664 GCATCTGCATTGAAATGTAGGAG 58.143 43.478 17.53 12.52 45.52 3.69
2275 3105 8.435187 TCTGCATTGAAATGTAGGAGATCTTAT 58.565 33.333 17.53 0.00 45.52 1.73
2346 3177 5.923665 ACTCTTTATTTGAACCGTAAAGCG 58.076 37.500 0.00 0.00 36.09 4.68
2462 3389 2.795231 AGCTGCTTCTTATCAAGGCA 57.205 45.000 0.00 0.00 0.00 4.75
2518 3445 3.131396 CGCAAATTACCGCTATCTTCCT 58.869 45.455 0.00 0.00 0.00 3.36
2557 3484 1.278699 CTCCTGAAGCTGCTCTTTCCT 59.721 52.381 1.00 0.00 34.56 3.36
2667 3594 3.442977 GCCTCTTTCATGTGCAGATTTCT 59.557 43.478 0.00 0.00 0.00 2.52
2717 3647 9.875675 CTGTTTTATATGCTAATTCTTCTCTGC 57.124 33.333 0.00 0.00 0.00 4.26
2732 3662 5.291858 TCTTCTCTGCGTTACATAATTGCTG 59.708 40.000 0.00 0.00 0.00 4.41
2864 3794 5.938125 TCTCAATTAAGCCTTCTGTTACCAC 59.062 40.000 0.00 0.00 0.00 4.16
2872 3802 3.188667 GCCTTCTGTTACCACTTTGCTAC 59.811 47.826 0.00 0.00 0.00 3.58
2981 3911 3.733337 ACAAGTTTCTCTAGTGGCACAG 58.267 45.455 21.41 14.68 41.80 3.66
3022 3952 9.624697 TTGTTATCATTTTTCACTTGATAGCAC 57.375 29.630 7.81 0.00 40.74 4.40
3178 4108 8.186709 TCAATGCTATGATCTCTAACATCTCA 57.813 34.615 0.00 0.00 0.00 3.27
3389 4319 2.159240 TGCTCTAGTTGTCTGCATACCG 60.159 50.000 0.00 0.00 0.00 4.02
3458 4388 5.212194 GTTTCATGTGTTATGCTTCACGTT 58.788 37.500 0.00 0.00 37.38 3.99
3459 4389 4.661993 TCATGTGTTATGCTTCACGTTC 57.338 40.909 0.00 0.00 37.38 3.95
3460 4390 4.061596 TCATGTGTTATGCTTCACGTTCA 58.938 39.130 0.00 0.00 37.38 3.18
3461 4391 3.870723 TGTGTTATGCTTCACGTTCAC 57.129 42.857 0.00 0.00 37.38 3.18
3462 4392 2.219903 TGTGTTATGCTTCACGTTCACG 59.780 45.455 0.00 0.00 46.33 4.35
3653 4589 4.461081 TGTTGGAATAATTAGGTGTGGCAC 59.539 41.667 11.55 11.55 0.00 5.01
3788 4724 3.120321 TCGTGATGTTGCCAAACTAGT 57.880 42.857 0.00 0.00 37.19 2.57
4089 5026 6.323739 ACAAAATTACCACACAGACTGGAATT 59.676 34.615 7.51 0.67 32.55 2.17
4120 5057 2.266070 GCAATAGCTGGTGTTGCCA 58.734 52.632 24.77 0.00 45.16 4.92
4184 5121 4.080526 GGTAAGCTTCCCCTCAGTTATTCA 60.081 45.833 0.00 0.00 0.00 2.57
4223 5160 7.681939 TGAATACATGTAAAGAGGAACCAAC 57.318 36.000 10.14 0.00 0.00 3.77
4229 5166 5.304686 TGTAAAGAGGAACCAACATGAGT 57.695 39.130 0.00 0.00 0.00 3.41
4249 5186 7.921786 TGAGTTGTTTCTAACTGGAATATGG 57.078 36.000 0.00 0.00 40.78 2.74
4328 5265 9.646427 TTAACCCAAGCAACATAACATATTTTC 57.354 29.630 0.00 0.00 0.00 2.29
4524 5461 3.119495 GGTCAATGCTAACCATGGTTGTC 60.119 47.826 35.49 26.12 38.92 3.18
4525 5462 2.746904 TCAATGCTAACCATGGTTGTCG 59.253 45.455 35.49 24.27 38.92 4.35
4544 5481 6.280855 TGTCGAGAGAAGACAAATATGGAA 57.719 37.500 0.00 0.00 44.56 3.53
4578 5515 6.546428 TTTTTCCTTCTATGATCCGAGACT 57.454 37.500 0.00 0.00 0.00 3.24
4929 5867 4.386711 ACCCTTCCTTTCGTTAGTTCTTG 58.613 43.478 0.00 0.00 0.00 3.02
4949 5887 2.749076 TGTGCTATGCAATGTTGGACTC 59.251 45.455 0.00 0.00 41.47 3.36
4950 5888 3.012518 GTGCTATGCAATGTTGGACTCT 58.987 45.455 0.00 0.00 41.47 3.24
5031 5969 1.144969 TTTACTTTCTGACGCGCCTG 58.855 50.000 5.73 0.00 0.00 4.85
5033 5971 1.529152 TACTTTCTGACGCGCCTGGA 61.529 55.000 5.73 0.00 0.00 3.86
5053 5991 6.098409 CCTGGACAGTTAGACCATATACACTT 59.902 42.308 0.00 0.00 41.20 3.16
5079 6017 5.105106 TCCTCCATACACACGTTTGATATGT 60.105 40.000 9.03 0.00 0.00 2.29
5128 6066 1.278127 TCTCGACCCTCAAAATGGTCC 59.722 52.381 3.27 0.00 46.78 4.46
5139 6078 4.155709 TCAAAATGGTCCCAGTATTTGCA 58.844 39.130 13.18 0.00 32.73 4.08
5142 6081 1.473258 TGGTCCCAGTATTTGCATGC 58.527 50.000 11.82 11.82 0.00 4.06
5170 6109 3.788775 GGACTCTGTCCGTACACAC 57.211 57.895 0.67 0.00 43.14 3.82
5194 6133 1.887707 CGGAAGCCGGCTATCCAAC 60.888 63.158 35.79 22.60 44.15 3.77
5195 6134 1.526225 GGAAGCCGGCTATCCAACC 60.526 63.158 34.16 24.65 33.30 3.77
5199 6138 2.555547 GCCGGCTATCCAACCATGC 61.556 63.158 22.15 0.00 0.00 4.06
5208 6147 2.704190 TCCAACCATGCCCCTTAAAA 57.296 45.000 0.00 0.00 0.00 1.52
5209 6148 3.197927 TCCAACCATGCCCCTTAAAAT 57.802 42.857 0.00 0.00 0.00 1.82
5210 6149 2.836981 TCCAACCATGCCCCTTAAAATG 59.163 45.455 0.00 0.00 0.00 2.32
5211 6150 2.571202 CCAACCATGCCCCTTAAAATGT 59.429 45.455 0.00 0.00 0.00 2.71
5212 6151 3.369366 CCAACCATGCCCCTTAAAATGTC 60.369 47.826 0.00 0.00 0.00 3.06
5213 6152 2.466846 ACCATGCCCCTTAAAATGTCC 58.533 47.619 0.00 0.00 0.00 4.02
5214 6153 2.225496 ACCATGCCCCTTAAAATGTCCA 60.225 45.455 0.00 0.00 0.00 4.02
5217 6156 2.745968 TGCCCCTTAAAATGTCCATCC 58.254 47.619 0.00 0.00 0.00 3.51
5222 6161 4.402474 CCCCTTAAAATGTCCATCCTTGTC 59.598 45.833 0.00 0.00 0.00 3.18
5250 6189 6.534475 TTTCCTAACTCCGCTATACTCAAA 57.466 37.500 0.00 0.00 0.00 2.69
5291 6230 8.205512 TGGCACAATTCATCAATAAATAGCATT 58.794 29.630 0.00 0.00 31.92 3.56
5310 6249 9.812347 ATAGCATTTAAATATCCTGGATGTTCA 57.188 29.630 19.42 1.84 0.00 3.18
5311 6250 8.537728 AGCATTTAAATATCCTGGATGTTCAA 57.462 30.769 19.42 14.33 0.00 2.69
5312 6251 8.416329 AGCATTTAAATATCCTGGATGTTCAAC 58.584 33.333 19.42 6.49 0.00 3.18
5313 6252 8.196771 GCATTTAAATATCCTGGATGTTCAACA 58.803 33.333 19.42 0.00 0.00 3.33
5350 6289 9.994432 AATTCATCGATTTCAAATACTTGAGTC 57.006 29.630 0.00 0.00 42.48 3.36
5351 6290 8.546597 TTCATCGATTTCAAATACTTGAGTCA 57.453 30.769 0.00 0.00 42.48 3.41
5352 6291 8.189709 TCATCGATTTCAAATACTTGAGTCAG 57.810 34.615 0.00 0.00 42.48 3.51
5353 6292 6.408858 TCGATTTCAAATACTTGAGTCAGC 57.591 37.500 0.00 0.00 42.48 4.26
5354 6293 5.351465 TCGATTTCAAATACTTGAGTCAGCC 59.649 40.000 0.00 0.00 42.48 4.85
5355 6294 5.551760 ATTTCAAATACTTGAGTCAGCCG 57.448 39.130 0.00 0.00 42.48 5.52
5356 6295 2.346803 TCAAATACTTGAGTCAGCCGC 58.653 47.619 0.00 0.00 36.62 6.53
5357 6296 2.076100 CAAATACTTGAGTCAGCCGCA 58.924 47.619 0.00 0.00 34.14 5.69
5358 6297 2.679837 CAAATACTTGAGTCAGCCGCAT 59.320 45.455 0.00 0.00 34.14 4.73
5359 6298 1.945387 ATACTTGAGTCAGCCGCATG 58.055 50.000 0.00 0.00 0.00 4.06
5360 6299 0.608130 TACTTGAGTCAGCCGCATGT 59.392 50.000 0.00 0.00 35.80 3.21
5361 6300 0.952497 ACTTGAGTCAGCCGCATGTG 60.952 55.000 0.00 0.00 31.57 3.21
5362 6301 0.952497 CTTGAGTCAGCCGCATGTGT 60.952 55.000 5.38 0.00 0.00 3.72
5363 6302 0.534877 TTGAGTCAGCCGCATGTGTT 60.535 50.000 5.38 0.00 0.00 3.32
5364 6303 1.229975 TGAGTCAGCCGCATGTGTTG 61.230 55.000 5.38 3.73 0.00 3.33
5365 6304 1.227943 AGTCAGCCGCATGTGTTGT 60.228 52.632 5.38 0.00 0.00 3.32
5366 6305 1.207593 GTCAGCCGCATGTGTTGTC 59.792 57.895 5.38 0.00 0.00 3.18
5367 6306 1.071299 TCAGCCGCATGTGTTGTCT 59.929 52.632 5.38 0.00 0.00 3.41
5368 6307 0.950555 TCAGCCGCATGTGTTGTCTC 60.951 55.000 5.38 0.00 0.00 3.36
5369 6308 1.071299 AGCCGCATGTGTTGTCTCA 59.929 52.632 5.38 0.00 0.00 3.27
5370 6309 0.321919 AGCCGCATGTGTTGTCTCAT 60.322 50.000 5.38 0.00 0.00 2.90
5371 6310 0.179181 GCCGCATGTGTTGTCTCATG 60.179 55.000 5.38 0.00 43.87 3.07
5376 6315 3.197434 CATGTGTTGTCTCATGCACTG 57.803 47.619 0.00 0.00 38.25 3.66
5377 6316 2.330440 TGTGTTGTCTCATGCACTGT 57.670 45.000 0.00 0.00 33.44 3.55
5378 6317 1.941975 TGTGTTGTCTCATGCACTGTG 59.058 47.619 2.76 2.76 33.44 3.66
5379 6318 0.946528 TGTTGTCTCATGCACTGTGC 59.053 50.000 25.15 25.15 45.29 4.57
5388 6327 4.395583 GCACTGTGCGCCTTCAGC 62.396 66.667 17.93 9.30 35.37 4.26
5389 6328 2.667536 CACTGTGCGCCTTCAGCT 60.668 61.111 19.19 8.21 40.39 4.24
5390 6329 2.111878 ACTGTGCGCCTTCAGCTT 59.888 55.556 19.19 3.82 40.39 3.74
5391 6330 1.963338 ACTGTGCGCCTTCAGCTTC 60.963 57.895 19.19 0.00 40.39 3.86
5392 6331 1.962822 CTGTGCGCCTTCAGCTTCA 60.963 57.895 4.18 0.00 40.39 3.02
5393 6332 1.302752 TGTGCGCCTTCAGCTTCAT 60.303 52.632 4.18 0.00 40.39 2.57
5394 6333 1.300971 TGTGCGCCTTCAGCTTCATC 61.301 55.000 4.18 0.00 40.39 2.92
5395 6334 1.746615 TGCGCCTTCAGCTTCATCC 60.747 57.895 4.18 0.00 40.39 3.51
5396 6335 1.746615 GCGCCTTCAGCTTCATCCA 60.747 57.895 0.00 0.00 40.39 3.41
5397 6336 1.308069 GCGCCTTCAGCTTCATCCAA 61.308 55.000 0.00 0.00 40.39 3.53
5398 6337 0.449388 CGCCTTCAGCTTCATCCAAC 59.551 55.000 0.00 0.00 40.39 3.77
5399 6338 1.538047 GCCTTCAGCTTCATCCAACA 58.462 50.000 0.00 0.00 38.99 3.33
5400 6339 1.888512 GCCTTCAGCTTCATCCAACAA 59.111 47.619 0.00 0.00 38.99 2.83
5401 6340 2.494870 GCCTTCAGCTTCATCCAACAAT 59.505 45.455 0.00 0.00 38.99 2.71
5402 6341 3.675228 GCCTTCAGCTTCATCCAACAATG 60.675 47.826 0.00 0.00 38.99 2.82
5403 6342 3.508793 CCTTCAGCTTCATCCAACAATGT 59.491 43.478 0.00 0.00 0.00 2.71
5404 6343 4.701651 CCTTCAGCTTCATCCAACAATGTA 59.298 41.667 0.00 0.00 0.00 2.29
5405 6344 5.359009 CCTTCAGCTTCATCCAACAATGTAT 59.641 40.000 0.00 0.00 0.00 2.29
5406 6345 5.823209 TCAGCTTCATCCAACAATGTATG 57.177 39.130 0.00 0.00 0.00 2.39
5407 6346 5.499313 TCAGCTTCATCCAACAATGTATGA 58.501 37.500 0.00 0.00 0.00 2.15
5408 6347 5.945191 TCAGCTTCATCCAACAATGTATGAA 59.055 36.000 9.04 9.04 36.32 2.57
5409 6348 6.032094 CAGCTTCATCCAACAATGTATGAAC 58.968 40.000 6.08 4.75 34.34 3.18
5410 6349 5.030295 GCTTCATCCAACAATGTATGAACG 58.970 41.667 6.08 4.98 34.34 3.95
5411 6350 5.391950 GCTTCATCCAACAATGTATGAACGT 60.392 40.000 6.08 0.00 34.34 3.99
5412 6351 6.183360 GCTTCATCCAACAATGTATGAACGTA 60.183 38.462 6.08 0.00 34.34 3.57
5413 6352 7.625395 GCTTCATCCAACAATGTATGAACGTAA 60.625 37.037 6.08 0.00 34.34 3.18
5414 6353 7.674471 TCATCCAACAATGTATGAACGTAAA 57.326 32.000 0.00 0.00 0.00 2.01
5415 6354 8.275015 TCATCCAACAATGTATGAACGTAAAT 57.725 30.769 0.00 0.00 0.00 1.40
5416 6355 8.735315 TCATCCAACAATGTATGAACGTAAATT 58.265 29.630 0.00 0.00 0.00 1.82
5417 6356 8.797215 CATCCAACAATGTATGAACGTAAATTG 58.203 33.333 12.63 12.63 36.03 2.32
5418 6357 6.804295 TCCAACAATGTATGAACGTAAATTGC 59.196 34.615 13.63 0.00 34.16 3.56
5419 6358 6.806249 CCAACAATGTATGAACGTAAATTGCT 59.194 34.615 13.63 3.17 34.16 3.91
5420 6359 7.965655 CCAACAATGTATGAACGTAAATTGCTA 59.034 33.333 13.63 0.00 34.16 3.49
5421 6360 8.998989 CAACAATGTATGAACGTAAATTGCTAG 58.001 33.333 13.63 0.00 34.16 3.42
5422 6361 7.186804 ACAATGTATGAACGTAAATTGCTAGC 58.813 34.615 8.10 8.10 34.16 3.42
5423 6362 5.728351 TGTATGAACGTAAATTGCTAGCC 57.272 39.130 13.29 0.00 0.00 3.93
5424 6363 4.573201 TGTATGAACGTAAATTGCTAGCCC 59.427 41.667 13.29 0.00 0.00 5.19
5425 6364 3.343941 TGAACGTAAATTGCTAGCCCT 57.656 42.857 13.29 0.00 0.00 5.19
5426 6365 3.681593 TGAACGTAAATTGCTAGCCCTT 58.318 40.909 13.29 5.30 0.00 3.95
5427 6366 4.834534 TGAACGTAAATTGCTAGCCCTTA 58.165 39.130 13.29 4.28 0.00 2.69
5428 6367 4.873827 TGAACGTAAATTGCTAGCCCTTAG 59.126 41.667 13.29 0.28 0.00 2.18
5429 6368 4.482952 ACGTAAATTGCTAGCCCTTAGT 57.517 40.909 13.29 0.94 0.00 2.24
5430 6369 4.840271 ACGTAAATTGCTAGCCCTTAGTT 58.160 39.130 13.29 3.44 0.00 2.24
5431 6370 4.874396 ACGTAAATTGCTAGCCCTTAGTTC 59.126 41.667 13.29 0.00 0.00 3.01
5432 6371 4.873827 CGTAAATTGCTAGCCCTTAGTTCA 59.126 41.667 13.29 0.00 0.00 3.18
5433 6372 5.353123 CGTAAATTGCTAGCCCTTAGTTCAA 59.647 40.000 13.29 0.00 0.00 2.69
5434 6373 6.038271 CGTAAATTGCTAGCCCTTAGTTCAAT 59.962 38.462 13.29 0.00 0.00 2.57
5435 6374 5.841957 AATTGCTAGCCCTTAGTTCAATG 57.158 39.130 13.29 0.00 28.61 2.82
5436 6375 3.281727 TGCTAGCCCTTAGTTCAATGG 57.718 47.619 13.29 0.00 0.00 3.16
5437 6376 2.576191 TGCTAGCCCTTAGTTCAATGGT 59.424 45.455 13.29 0.00 0.00 3.55
5438 6377 3.778075 TGCTAGCCCTTAGTTCAATGGTA 59.222 43.478 13.29 0.00 0.00 3.25
5439 6378 4.141711 TGCTAGCCCTTAGTTCAATGGTAG 60.142 45.833 13.29 0.00 0.00 3.18
5440 6379 3.283259 AGCCCTTAGTTCAATGGTAGC 57.717 47.619 0.00 0.00 0.00 3.58
5441 6380 1.940613 GCCCTTAGTTCAATGGTAGCG 59.059 52.381 0.00 0.00 0.00 4.26
5442 6381 1.940613 CCCTTAGTTCAATGGTAGCGC 59.059 52.381 0.00 0.00 0.00 5.92
5443 6382 1.593006 CCTTAGTTCAATGGTAGCGCG 59.407 52.381 0.00 0.00 0.00 6.86
5444 6383 2.268298 CTTAGTTCAATGGTAGCGCGT 58.732 47.619 8.43 0.00 0.00 6.01
5445 6384 1.635844 TAGTTCAATGGTAGCGCGTG 58.364 50.000 8.43 0.00 0.00 5.34
5446 6385 0.037697 AGTTCAATGGTAGCGCGTGA 60.038 50.000 8.43 0.00 0.00 4.35
5447 6386 0.094730 GTTCAATGGTAGCGCGTGAC 59.905 55.000 8.43 5.92 0.00 3.67
5448 6387 0.037697 TTCAATGGTAGCGCGTGACT 60.038 50.000 8.43 0.00 0.00 3.41
5449 6388 0.457853 TCAATGGTAGCGCGTGACTC 60.458 55.000 8.43 1.40 0.00 3.36
5450 6389 0.735978 CAATGGTAGCGCGTGACTCA 60.736 55.000 8.43 7.02 0.00 3.41
5451 6390 0.458543 AATGGTAGCGCGTGACTCAG 60.459 55.000 8.43 0.00 0.00 3.35
5452 6391 2.202623 GGTAGCGCGTGACTCAGG 60.203 66.667 8.43 0.00 0.00 3.86
5453 6392 2.697761 GGTAGCGCGTGACTCAGGA 61.698 63.158 8.43 0.00 0.00 3.86
5454 6393 1.433879 GTAGCGCGTGACTCAGGAT 59.566 57.895 8.43 0.00 0.00 3.24
5455 6394 0.867753 GTAGCGCGTGACTCAGGATG 60.868 60.000 8.43 0.00 37.54 3.51
5456 6395 2.004808 TAGCGCGTGACTCAGGATGG 62.005 60.000 8.43 0.00 36.16 3.51
5458 6397 2.710902 CGCGTGACTCAGGATGGGA 61.711 63.158 0.00 0.00 41.11 4.37
5459 6398 1.596934 GCGTGACTCAGGATGGGAA 59.403 57.895 2.83 0.00 41.11 3.97
5460 6399 0.179000 GCGTGACTCAGGATGGGAAT 59.821 55.000 2.83 0.00 41.11 3.01
5461 6400 1.945387 CGTGACTCAGGATGGGAATG 58.055 55.000 0.00 0.00 41.11 2.67
5462 6401 1.473965 CGTGACTCAGGATGGGAATGG 60.474 57.143 0.00 0.00 41.11 3.16
5463 6402 1.133976 GTGACTCAGGATGGGAATGGG 60.134 57.143 0.00 0.00 41.11 4.00
5464 6403 0.179006 GACTCAGGATGGGAATGGGC 60.179 60.000 0.00 0.00 41.11 5.36
5465 6404 1.152368 CTCAGGATGGGAATGGGCC 59.848 63.158 0.00 0.00 41.11 5.80
5466 6405 2.203394 CAGGATGGGAATGGGCCG 60.203 66.667 0.00 0.00 0.00 6.13
5467 6406 2.368192 AGGATGGGAATGGGCCGA 60.368 61.111 0.00 0.00 0.00 5.54
5468 6407 2.203351 GGATGGGAATGGGCCGAC 60.203 66.667 0.00 0.00 0.00 4.79
5469 6408 2.203351 GATGGGAATGGGCCGACC 60.203 66.667 0.00 1.57 40.81 4.79
5483 6422 4.410400 GACCCGACCCTGGCCTTG 62.410 72.222 3.32 0.00 0.00 3.61
5486 6425 4.410400 CCGACCCTGGCCTTGGAC 62.410 72.222 16.85 10.20 0.00 4.02
5487 6426 4.410400 CGACCCTGGCCTTGGACC 62.410 72.222 16.85 7.81 0.00 4.46
5488 6427 2.936032 GACCCTGGCCTTGGACCT 60.936 66.667 16.85 0.00 0.00 3.85
5489 6428 3.260100 ACCCTGGCCTTGGACCTG 61.260 66.667 16.85 3.55 0.00 4.00
5490 6429 4.052518 CCCTGGCCTTGGACCTGG 62.053 72.222 15.51 14.41 43.92 4.45
5495 6434 4.432741 GCCTTGGACCTGGCCCTC 62.433 72.222 15.41 0.00 43.11 4.30
5496 6435 2.935481 CCTTGGACCTGGCCCTCA 60.935 66.667 0.00 0.00 0.00 3.86
5497 6436 2.311854 CCTTGGACCTGGCCCTCAT 61.312 63.158 0.00 0.00 0.00 2.90
5498 6437 1.077212 CTTGGACCTGGCCCTCATG 60.077 63.158 0.00 0.00 0.00 3.07
5499 6438 2.563013 CTTGGACCTGGCCCTCATGG 62.563 65.000 0.00 0.00 37.09 3.66
5500 6439 3.017581 GGACCTGGCCCTCATGGT 61.018 66.667 0.00 0.04 36.04 3.55
5501 6440 2.592308 GACCTGGCCCTCATGGTC 59.408 66.667 0.00 6.75 41.52 4.02
5502 6441 1.997874 GACCTGGCCCTCATGGTCT 60.998 63.158 16.57 0.00 43.91 3.85
5503 6442 1.977293 GACCTGGCCCTCATGGTCTC 61.977 65.000 16.57 0.00 43.91 3.36
5504 6443 2.503061 CTGGCCCTCATGGTCTCG 59.497 66.667 0.00 0.00 40.46 4.04
5505 6444 2.038813 TGGCCCTCATGGTCTCGA 59.961 61.111 0.00 0.00 40.46 4.04
5506 6445 2.025767 CTGGCCCTCATGGTCTCGAG 62.026 65.000 5.93 5.93 40.46 4.04
5508 6447 2.818132 CCCTCATGGTCTCGAGGC 59.182 66.667 13.56 11.38 46.37 4.70
5509 6448 2.801631 CCCTCATGGTCTCGAGGCC 61.802 68.421 29.45 29.45 46.37 5.19
5510 6449 2.060383 CCTCATGGTCTCGAGGCCA 61.060 63.158 38.88 38.88 42.30 5.36
5511 6450 1.617018 CCTCATGGTCTCGAGGCCAA 61.617 60.000 40.10 25.01 42.30 4.52
5512 6451 0.467384 CTCATGGTCTCGAGGCCAAT 59.533 55.000 40.10 25.45 38.38 3.16
5513 6452 0.911769 TCATGGTCTCGAGGCCAATT 59.088 50.000 40.10 24.09 38.38 2.32
5514 6453 1.281867 TCATGGTCTCGAGGCCAATTT 59.718 47.619 40.10 23.31 38.38 1.82
5515 6454 2.503765 TCATGGTCTCGAGGCCAATTTA 59.496 45.455 40.10 23.00 38.38 1.40
5516 6455 3.136443 TCATGGTCTCGAGGCCAATTTAT 59.864 43.478 40.10 22.52 38.38 1.40
5517 6456 2.917933 TGGTCTCGAGGCCAATTTATG 58.082 47.619 35.78 0.00 0.00 1.90
5518 6457 2.503765 TGGTCTCGAGGCCAATTTATGA 59.496 45.455 35.78 10.56 0.00 2.15
5519 6458 3.134458 GGTCTCGAGGCCAATTTATGAG 58.866 50.000 30.98 0.90 0.00 2.90
5520 6459 3.134458 GTCTCGAGGCCAATTTATGAGG 58.866 50.000 13.56 0.00 0.00 3.86
5525 6464 3.944871 GCCAATTTATGAGGCCACG 57.055 52.632 5.01 0.00 42.58 4.94
5526 6465 0.385390 GCCAATTTATGAGGCCACGG 59.615 55.000 5.01 0.00 42.58 4.94
5527 6466 1.032014 CCAATTTATGAGGCCACGGG 58.968 55.000 5.01 0.00 0.00 5.28
5528 6467 1.684869 CCAATTTATGAGGCCACGGGT 60.685 52.381 5.01 0.00 0.00 5.28
5529 6468 1.676006 CAATTTATGAGGCCACGGGTC 59.324 52.381 5.01 0.00 0.00 4.46
5530 6469 0.179056 ATTTATGAGGCCACGGGTCG 60.179 55.000 5.01 0.00 29.39 4.79
5531 6470 1.259142 TTTATGAGGCCACGGGTCGA 61.259 55.000 5.01 0.00 29.39 4.20
5532 6471 1.952102 TTATGAGGCCACGGGTCGAC 61.952 60.000 7.13 7.13 29.39 4.20
5548 6487 3.930229 GGTCGACCCATTTTTAAAATGCC 59.070 43.478 24.75 13.47 0.00 4.40
5549 6488 4.561105 GTCGACCCATTTTTAAAATGCCA 58.439 39.130 21.14 3.76 0.00 4.92
5550 6489 4.991687 GTCGACCCATTTTTAAAATGCCAA 59.008 37.500 21.14 5.40 0.00 4.52
5551 6490 5.641636 GTCGACCCATTTTTAAAATGCCAAT 59.358 36.000 21.14 8.64 0.00 3.16
5552 6491 5.641209 TCGACCCATTTTTAAAATGCCAATG 59.359 36.000 21.14 9.79 0.00 2.82
5553 6492 5.163774 CGACCCATTTTTAAAATGCCAATGG 60.164 40.000 21.14 18.22 42.45 3.16
5572 6511 4.431131 CTTGCTGGCCCGATGGGT 62.431 66.667 0.00 0.00 46.51 4.51
5573 6512 3.012119 TTGCTGGCCCGATGGGTA 61.012 61.111 0.00 0.00 46.51 3.69
5574 6513 2.343475 CTTGCTGGCCCGATGGGTAT 62.343 60.000 0.00 0.00 46.51 2.73
5575 6514 2.032681 GCTGGCCCGATGGGTATC 59.967 66.667 0.00 0.00 46.51 2.24
5576 6515 2.520536 GCTGGCCCGATGGGTATCT 61.521 63.158 0.00 0.00 46.51 1.98
5577 6516 1.674057 CTGGCCCGATGGGTATCTC 59.326 63.158 0.00 0.00 46.51 2.75
5578 6517 2.159819 CTGGCCCGATGGGTATCTCG 62.160 65.000 0.00 0.00 46.51 4.04
5583 6522 1.579932 CGATGGGTATCTCGGGTCG 59.420 63.158 0.00 0.00 0.00 4.79
5584 6523 1.863662 CGATGGGTATCTCGGGTCGG 61.864 65.000 0.00 0.00 0.00 4.79
5585 6524 2.156051 GATGGGTATCTCGGGTCGGC 62.156 65.000 0.00 0.00 0.00 5.54
5586 6525 3.613689 GGGTATCTCGGGTCGGCC 61.614 72.222 0.00 0.00 0.00 6.13
5587 6526 2.521224 GGTATCTCGGGTCGGCCT 60.521 66.667 5.77 0.00 34.45 5.19
5588 6527 1.228367 GGTATCTCGGGTCGGCCTA 60.228 63.158 5.77 0.00 34.45 3.93
5589 6528 0.825010 GGTATCTCGGGTCGGCCTAA 60.825 60.000 5.77 0.00 34.45 2.69
5590 6529 1.035139 GTATCTCGGGTCGGCCTAAA 58.965 55.000 5.77 0.00 34.45 1.85
5591 6530 1.617357 GTATCTCGGGTCGGCCTAAAT 59.383 52.381 5.77 0.00 34.45 1.40
5592 6531 1.129058 ATCTCGGGTCGGCCTAAATT 58.871 50.000 5.77 0.00 34.45 1.82
5593 6532 0.462789 TCTCGGGTCGGCCTAAATTC 59.537 55.000 5.77 0.00 34.45 2.17
5594 6533 0.464452 CTCGGGTCGGCCTAAATTCT 59.536 55.000 5.77 0.00 34.45 2.40
5595 6534 1.684983 CTCGGGTCGGCCTAAATTCTA 59.315 52.381 5.77 0.00 34.45 2.10
5596 6535 1.684983 TCGGGTCGGCCTAAATTCTAG 59.315 52.381 5.77 0.00 34.45 2.43
5597 6536 1.411612 CGGGTCGGCCTAAATTCTAGT 59.588 52.381 5.77 0.00 34.45 2.57
5598 6537 2.159000 CGGGTCGGCCTAAATTCTAGTT 60.159 50.000 5.77 0.00 34.45 2.24
5599 6538 3.203716 GGGTCGGCCTAAATTCTAGTTG 58.796 50.000 5.77 0.00 34.45 3.16
5600 6539 3.370209 GGGTCGGCCTAAATTCTAGTTGT 60.370 47.826 5.77 0.00 34.45 3.32
5601 6540 4.259356 GGTCGGCCTAAATTCTAGTTGTT 58.741 43.478 0.00 0.00 0.00 2.83
5602 6541 5.422145 GGTCGGCCTAAATTCTAGTTGTTA 58.578 41.667 0.00 0.00 0.00 2.41
5603 6542 6.053650 GGTCGGCCTAAATTCTAGTTGTTAT 58.946 40.000 0.00 0.00 0.00 1.89
5604 6543 6.202379 GGTCGGCCTAAATTCTAGTTGTTATC 59.798 42.308 0.00 0.00 0.00 1.75
5605 6544 6.985059 GTCGGCCTAAATTCTAGTTGTTATCT 59.015 38.462 0.00 0.00 0.00 1.98
5606 6545 8.139989 GTCGGCCTAAATTCTAGTTGTTATCTA 58.860 37.037 0.00 0.00 0.00 1.98
5607 6546 8.358148 TCGGCCTAAATTCTAGTTGTTATCTAG 58.642 37.037 0.00 0.00 36.99 2.43
5608 6547 8.142551 CGGCCTAAATTCTAGTTGTTATCTAGT 58.857 37.037 0.00 0.00 36.99 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.522824 GGAAATTAGCGATAGGAGAACGTTT 59.477 40.000 0.46 0.00 0.00 3.60
35 36 5.704888 CGTAATCTGCTAATCCTAGTCAGG 58.295 45.833 0.00 0.00 44.17 3.86
39 40 5.531122 TTGCGTAATCTGCTAATCCTAGT 57.469 39.130 0.00 0.00 0.00 2.57
41 42 4.307432 GCTTGCGTAATCTGCTAATCCTA 58.693 43.478 0.00 0.00 0.00 2.94
42 43 3.134458 GCTTGCGTAATCTGCTAATCCT 58.866 45.455 0.00 0.00 0.00 3.24
71 74 1.480789 TCATGCTGCAAGATGGCATT 58.519 45.000 6.36 0.00 43.62 3.56
80 83 3.405831 GCTAGATGGTATCATGCTGCAA 58.594 45.455 6.36 0.00 32.98 4.08
83 86 3.977134 AGGCTAGATGGTATCATGCTG 57.023 47.619 0.00 0.00 32.98 4.41
94 97 1.347050 ACCAGCATGCTAGGCTAGATG 59.653 52.381 25.37 22.30 40.23 2.90
144 147 1.070038 GCGTGAACCATTGGCAATTG 58.930 50.000 10.65 10.04 0.00 2.32
146 149 0.244450 CTGCGTGAACCATTGGCAAT 59.756 50.000 6.96 6.96 32.59 3.56
153 156 4.460382 AGAATTGATTTCTGCGTGAACCAT 59.540 37.500 0.00 0.00 43.21 3.55
177 180 6.811253 ACGTGCTTGACCTGAAATAATTTA 57.189 33.333 0.00 0.00 0.00 1.40
186 189 3.188159 AGTTAAACGTGCTTGACCTGA 57.812 42.857 0.00 0.00 0.00 3.86
187 190 3.963383 AAGTTAAACGTGCTTGACCTG 57.037 42.857 0.00 0.00 0.00 4.00
189 192 5.209977 CCTTAAAGTTAAACGTGCTTGACC 58.790 41.667 0.00 0.00 0.00 4.02
191 194 6.439675 AACCTTAAAGTTAAACGTGCTTGA 57.560 33.333 0.00 0.00 0.00 3.02
278 281 8.902540 ACAAGTTGTGACATCTGTCTTAATAA 57.097 30.769 7.96 0.00 44.99 1.40
353 559 9.956720 CAAGTCTCTCTGTCAAAATAAAAACAT 57.043 29.630 0.00 0.00 0.00 2.71
361 567 5.128919 AGCAACAAGTCTCTCTGTCAAAAT 58.871 37.500 0.00 0.00 0.00 1.82
408 757 7.310664 TGTATTAGGTCACTAGAAACGTCTTG 58.689 38.462 0.00 0.00 35.12 3.02
450 1231 1.887797 TCCCACCGTGATATTCCCTT 58.112 50.000 0.00 0.00 0.00 3.95
463 1244 1.389555 CCGCTTTATTCCTTCCCACC 58.610 55.000 0.00 0.00 0.00 4.61
494 1275 8.781067 TTCATTTTCGTTTACTTGTCAGAATG 57.219 30.769 0.00 0.00 37.54 2.67
499 1280 5.823570 TCCCTTCATTTTCGTTTACTTGTCA 59.176 36.000 0.00 0.00 0.00 3.58
501 1282 5.826208 ACTCCCTTCATTTTCGTTTACTTGT 59.174 36.000 0.00 0.00 0.00 3.16
567 1348 1.038681 TAGCTCGTGGCACGGGAATA 61.039 55.000 41.29 28.46 46.98 1.75
606 1387 0.320073 TCCTGCTGGGAAACGTAACG 60.320 55.000 10.07 0.00 41.91 3.18
620 1401 6.113411 TCCAAAAGCTACTACTATTTCCTGC 58.887 40.000 0.00 0.00 0.00 4.85
622 1403 8.325477 AGATCCAAAAGCTACTACTATTTCCT 57.675 34.615 0.00 0.00 0.00 3.36
635 1416 0.034089 CCGGGGAAGATCCAAAAGCT 60.034 55.000 0.00 0.00 38.64 3.74
636 1417 1.667154 GCCGGGGAAGATCCAAAAGC 61.667 60.000 2.18 0.00 38.64 3.51
688 1469 3.381983 TGATGCTCGTGAGGCCGT 61.382 61.111 0.00 0.00 0.00 5.68
802 1583 1.454295 GAGAGGAGAGGACGGGGTC 60.454 68.421 0.00 0.00 0.00 4.46
803 1584 2.684735 GAGAGGAGAGGACGGGGT 59.315 66.667 0.00 0.00 0.00 4.95
1287 2087 2.003301 GCGTTTCTAGAAGCTTCCAGG 58.997 52.381 22.81 12.84 0.00 4.45
1428 2230 1.222936 CTGCAGGTGGGACCAGATC 59.777 63.158 5.57 0.00 41.95 2.75
1429 2231 2.976490 GCTGCAGGTGGGACCAGAT 61.976 63.158 17.12 0.00 41.95 2.90
1452 2254 1.143838 CCCACCGATCAGCGATCAA 59.856 57.895 15.49 0.00 44.57 2.57
1533 2335 8.784043 ACCACAGTCATCAGAAAGTAATAAAAC 58.216 33.333 0.00 0.00 0.00 2.43
1671 2479 3.302740 CCGCAAGATCGATCAAGCTAAAC 60.303 47.826 27.98 10.91 43.02 2.01
1675 2483 0.176680 ACCGCAAGATCGATCAAGCT 59.823 50.000 27.98 15.31 43.02 3.74
1703 2524 4.260948 GCCAGAATGCACTATTTAGCTGAC 60.261 45.833 0.00 0.00 31.97 3.51
1712 2533 1.019673 CTTGCGCCAGAATGCACTAT 58.980 50.000 4.18 0.00 41.57 2.12
1714 2535 1.601759 ACTTGCGCCAGAATGCACT 60.602 52.632 16.40 0.00 41.57 4.40
1773 2594 8.529476 GGGAAGTAGTTGTAGATCTTCTTGTTA 58.471 37.037 0.00 0.00 36.02 2.41
1842 2671 0.366871 CGCTGATCTTCACCGTTTCG 59.633 55.000 0.00 0.00 0.00 3.46
1849 2678 1.086634 GTGAGGCCGCTGATCTTCAC 61.087 60.000 8.34 4.83 0.00 3.18
1862 2691 2.419324 CTGAAAGCAAGATCAGTGAGGC 59.581 50.000 0.00 0.00 38.57 4.70
1868 2697 5.686159 ACAAGAACTGAAAGCAAGATCAG 57.314 39.130 0.00 1.46 46.69 2.90
1869 2698 5.009010 GGAACAAGAACTGAAAGCAAGATCA 59.991 40.000 0.00 0.00 37.60 2.92
1870 2699 5.240403 AGGAACAAGAACTGAAAGCAAGATC 59.760 40.000 0.00 0.00 37.60 2.75
1871 2700 5.009410 CAGGAACAAGAACTGAAAGCAAGAT 59.991 40.000 0.00 0.00 37.60 2.40
1872 2701 4.336433 CAGGAACAAGAACTGAAAGCAAGA 59.664 41.667 0.00 0.00 37.60 3.02
1873 2702 4.336433 TCAGGAACAAGAACTGAAAGCAAG 59.664 41.667 0.00 0.00 38.22 4.01
1874 2703 4.269183 TCAGGAACAAGAACTGAAAGCAA 58.731 39.130 0.00 0.00 38.22 3.91
1875 2704 3.879295 CTCAGGAACAAGAACTGAAAGCA 59.121 43.478 0.00 0.00 40.39 3.91
1876 2705 3.879892 ACTCAGGAACAAGAACTGAAAGC 59.120 43.478 0.00 0.00 40.39 3.51
1877 2706 5.731686 GCAACTCAGGAACAAGAACTGAAAG 60.732 44.000 0.00 0.00 40.39 2.62
1878 2707 4.096382 GCAACTCAGGAACAAGAACTGAAA 59.904 41.667 0.00 0.00 40.39 2.69
1879 2708 3.627577 GCAACTCAGGAACAAGAACTGAA 59.372 43.478 0.00 0.00 40.39 3.02
1880 2709 3.206150 GCAACTCAGGAACAAGAACTGA 58.794 45.455 0.00 0.00 38.80 3.41
1881 2710 2.945008 TGCAACTCAGGAACAAGAACTG 59.055 45.455 0.00 0.00 0.00 3.16
1882 2711 3.281727 TGCAACTCAGGAACAAGAACT 57.718 42.857 0.00 0.00 0.00 3.01
1883 2712 3.378427 AGTTGCAACTCAGGAACAAGAAC 59.622 43.478 26.36 0.00 41.61 3.01
1884 2713 3.620488 AGTTGCAACTCAGGAACAAGAA 58.380 40.909 26.36 0.00 41.61 2.52
1885 2714 3.281727 AGTTGCAACTCAGGAACAAGA 57.718 42.857 26.36 0.00 41.61 3.02
1886 2715 4.335315 TGTAAGTTGCAACTCAGGAACAAG 59.665 41.667 31.20 0.00 41.61 3.16
1887 2716 4.095782 GTGTAAGTTGCAACTCAGGAACAA 59.904 41.667 31.20 9.55 41.61 2.83
1888 2717 3.625764 GTGTAAGTTGCAACTCAGGAACA 59.374 43.478 31.20 23.89 41.61 3.18
1889 2718 3.877508 AGTGTAAGTTGCAACTCAGGAAC 59.122 43.478 31.20 22.48 38.57 3.62
1890 2719 3.876914 CAGTGTAAGTTGCAACTCAGGAA 59.123 43.478 31.20 13.38 38.57 3.36
1891 2720 3.466836 CAGTGTAAGTTGCAACTCAGGA 58.533 45.455 31.20 14.77 38.57 3.86
1892 2721 2.549754 CCAGTGTAAGTTGCAACTCAGG 59.450 50.000 31.20 20.14 38.57 3.86
1896 2725 4.037923 CCATTTCCAGTGTAAGTTGCAACT 59.962 41.667 26.36 26.36 42.04 3.16
1941 2771 3.491619 CCACAAGTAGATGGATCACGGAG 60.492 52.174 0.00 0.00 38.34 4.63
1944 2774 2.430694 TCCCACAAGTAGATGGATCACG 59.569 50.000 0.00 0.00 38.34 4.35
2021 2851 3.135994 CAACAGTACAGTAAGGCGGTTT 58.864 45.455 0.00 0.00 0.00 3.27
2026 2856 5.296035 AGAAAACACAACAGTACAGTAAGGC 59.704 40.000 0.00 0.00 0.00 4.35
2027 2857 6.920569 AGAAAACACAACAGTACAGTAAGG 57.079 37.500 0.00 0.00 0.00 2.69
2031 2861 6.653320 TCTCAAAGAAAACACAACAGTACAGT 59.347 34.615 0.00 0.00 0.00 3.55
2037 2867 7.541783 TGTGAATTCTCAAAGAAAACACAACAG 59.458 33.333 19.71 0.00 43.66 3.16
2038 2868 7.374272 TGTGAATTCTCAAAGAAAACACAACA 58.626 30.769 19.71 7.70 43.66 3.33
2064 2894 2.304180 CTGAGGACCATTCTGACCACTT 59.696 50.000 0.00 0.00 0.00 3.16
2094 2924 8.778358 GCTGAACTTATATGAATTTACAGGAGG 58.222 37.037 0.00 0.00 0.00 4.30
2111 2941 4.077108 TCTAAGTGAGACCGCTGAACTTA 58.923 43.478 0.00 0.00 32.67 2.24
2123 2953 6.776116 TCTTTGTTCCTACAGTCTAAGTGAGA 59.224 38.462 0.00 0.00 35.28 3.27
2165 2995 9.205513 AGGAAGCCTATCAATTGAACAATATTT 57.794 29.630 13.09 1.87 28.47 1.40
2178 3008 8.593945 AATGAAATTTACAGGAAGCCTATCAA 57.406 30.769 0.00 0.00 26.74 2.57
2205 3035 4.649088 ATGATCCATGAGTGCAACATTG 57.351 40.909 0.00 3.18 41.43 2.82
2248 3078 6.839454 AGATCTCCTACATTTCAATGCAGAT 58.161 36.000 1.83 3.46 40.04 2.90
2346 3177 5.163663 TGACCACACAAAGAACAACAGATTC 60.164 40.000 0.00 0.00 0.00 2.52
2393 3224 5.630121 TGTATGAAAAGATGAAGGGTGTGT 58.370 37.500 0.00 0.00 0.00 3.72
2397 3230 9.753674 TTTCTAATGTATGAAAAGATGAAGGGT 57.246 29.630 0.00 0.00 30.41 4.34
2495 3422 3.059800 GGAAGATAGCGGTAATTTGCGTC 60.060 47.826 0.00 0.00 35.87 5.19
2518 3445 2.872245 GAGCGTTGCATTGATAGGCTAA 59.128 45.455 0.00 0.00 33.62 3.09
2667 3594 4.519906 AGGGACAAGAGAACTCCAAAAA 57.480 40.909 0.00 0.00 0.00 1.94
2714 3644 3.100817 GCACAGCAATTATGTAACGCAG 58.899 45.455 0.00 0.00 0.00 5.18
2716 3646 3.100817 CTGCACAGCAATTATGTAACGC 58.899 45.455 0.00 0.00 38.41 4.84
2954 3884 5.221722 TGCCACTAGAGAAACTTGTCTGATT 60.222 40.000 0.00 0.00 32.79 2.57
2981 3911 9.696917 AAATGATAACAATGACAGAAAAGGAAC 57.303 29.630 0.00 0.00 0.00 3.62
3065 3995 8.653191 TCCAAGTAGTTAAGTAGGTTGATGAAA 58.347 33.333 11.53 0.00 0.00 2.69
3069 3999 7.970102 TGTTCCAAGTAGTTAAGTAGGTTGAT 58.030 34.615 11.53 0.00 0.00 2.57
3078 4008 5.643777 CCTGGTCATGTTCCAAGTAGTTAAG 59.356 44.000 11.93 0.74 34.35 1.85
3089 4019 2.582052 TGAAACACCTGGTCATGTTCC 58.418 47.619 0.00 0.00 38.08 3.62
3178 4108 7.798071 TGGAATAAATACTCCGGTAAGTGAAT 58.202 34.615 0.00 0.00 34.14 2.57
3440 4370 3.120683 CGTGAACGTGAAGCATAACACAT 60.121 43.478 0.00 0.00 36.91 3.21
3458 4388 5.697178 TGGTCATTCGAAATAAGAAACGTGA 59.303 36.000 0.00 0.00 0.00 4.35
3459 4389 5.922546 TGGTCATTCGAAATAAGAAACGTG 58.077 37.500 0.00 0.00 0.00 4.49
3460 4390 6.368213 GTTGGTCATTCGAAATAAGAAACGT 58.632 36.000 0.00 0.00 0.00 3.99
3461 4391 5.793457 GGTTGGTCATTCGAAATAAGAAACG 59.207 40.000 0.00 0.00 0.00 3.60
3462 4392 6.909909 AGGTTGGTCATTCGAAATAAGAAAC 58.090 36.000 0.00 3.40 0.00 2.78
3463 4393 7.367285 CAAGGTTGGTCATTCGAAATAAGAAA 58.633 34.615 0.00 0.00 0.00 2.52
3473 4409 1.522668 TCTGCAAGGTTGGTCATTCG 58.477 50.000 0.00 0.00 0.00 3.34
3788 4724 8.252417 CAGATGAACCATCAAAAATGGAATGTA 58.748 33.333 10.91 0.00 42.72 2.29
4120 5057 7.569639 TCTTAGCTTTGATGTACGAGTAGAT 57.430 36.000 0.00 0.00 0.00 1.98
4198 5135 7.721842 TGTTGGTTCCTCTTTACATGTATTCAA 59.278 33.333 6.36 0.00 0.00 2.69
4223 5160 8.400947 CCATATTCCAGTTAGAAACAACTCATG 58.599 37.037 0.00 0.00 36.61 3.07
4249 5186 4.215399 TCAGTGTTGCCAAAGCTGTATAAC 59.785 41.667 8.66 0.00 40.80 1.89
4269 5206 8.574196 AACTTTCAATTTATTTGGTCGTTCAG 57.426 30.769 0.00 0.00 35.92 3.02
4573 5510 2.279741 TGCGGCATTAACATGAGTCTC 58.720 47.619 0.00 0.00 31.07 3.36
4577 5514 3.976793 AGATTGCGGCATTAACATGAG 57.023 42.857 2.28 0.00 31.07 2.90
4578 5515 6.389830 AATAAGATTGCGGCATTAACATGA 57.610 33.333 2.28 0.00 31.07 3.07
4929 5867 3.012518 AGAGTCCAACATTGCATAGCAC 58.987 45.455 0.00 0.00 38.71 4.40
4949 5887 4.244066 CACAGAAGACTTGATGGTCTGAG 58.756 47.826 6.59 0.00 44.67 3.35
4950 5888 3.555795 GCACAGAAGACTTGATGGTCTGA 60.556 47.826 6.59 0.00 44.67 3.27
5025 5963 1.448013 GGTCTAACTGTCCAGGCGC 60.448 63.158 0.00 0.00 0.00 6.53
5031 5969 8.305317 GGATAAGTGTATATGGTCTAACTGTCC 58.695 40.741 0.00 0.00 0.00 4.02
5033 5971 9.080097 GAGGATAAGTGTATATGGTCTAACTGT 57.920 37.037 0.00 0.00 0.00 3.55
5053 5991 5.607939 ATCAAACGTGTGTATGGAGGATA 57.392 39.130 5.45 0.00 0.00 2.59
5079 6017 8.475639 CCCTAACACTATTCTCTGCTAAACTTA 58.524 37.037 0.00 0.00 0.00 2.24
5096 6034 0.824759 GGTCGAGATGCCCTAACACT 59.175 55.000 0.00 0.00 0.00 3.55
5128 6066 1.066257 GGCCGCATGCAAATACTGG 59.934 57.895 19.57 9.84 43.89 4.00
5166 6105 1.876714 CGGCTTCCGTATCCGTGTG 60.877 63.158 0.00 0.00 42.73 3.82
5170 6109 1.874345 ATAGCCGGCTTCCGTATCCG 61.874 60.000 37.74 0.00 46.80 4.18
5172 6111 0.108756 GGATAGCCGGCTTCCGTATC 60.109 60.000 37.74 28.75 46.80 2.24
5177 6116 1.526225 GGTTGGATAGCCGGCTTCC 60.526 63.158 37.74 34.84 36.79 3.46
5185 6124 0.106015 AAGGGGCATGGTTGGATAGC 60.106 55.000 0.00 0.00 0.00 2.97
5187 6126 4.338795 TTTTAAGGGGCATGGTTGGATA 57.661 40.909 0.00 0.00 0.00 2.59
5194 6133 2.465813 TGGACATTTTAAGGGGCATGG 58.534 47.619 0.00 0.00 0.00 3.66
5195 6134 3.070015 GGATGGACATTTTAAGGGGCATG 59.930 47.826 0.00 0.00 0.00 4.06
5199 6138 4.352893 ACAAGGATGGACATTTTAAGGGG 58.647 43.478 0.00 0.00 0.00 4.79
5229 6168 6.726490 ATTTTGAGTATAGCGGAGTTAGGA 57.274 37.500 0.00 0.00 0.00 2.94
5287 6226 8.196771 TGTTGAACATCCAGGATATTTAAATGC 58.803 33.333 11.05 2.99 0.00 3.56
5324 6263 9.994432 GACTCAAGTATTTGAAATCGATGAATT 57.006 29.630 0.00 0.00 42.48 2.17
5325 6264 9.166173 TGACTCAAGTATTTGAAATCGATGAAT 57.834 29.630 0.00 0.49 42.48 2.57
5326 6265 8.546597 TGACTCAAGTATTTGAAATCGATGAA 57.453 30.769 0.00 0.00 42.48 2.57
5327 6266 7.201556 GCTGACTCAAGTATTTGAAATCGATGA 60.202 37.037 0.00 0.00 42.48 2.92
5328 6267 6.904011 GCTGACTCAAGTATTTGAAATCGATG 59.096 38.462 0.00 0.00 42.48 3.84
5329 6268 6.037610 GGCTGACTCAAGTATTTGAAATCGAT 59.962 38.462 2.06 0.00 42.48 3.59
5330 6269 5.351465 GGCTGACTCAAGTATTTGAAATCGA 59.649 40.000 2.06 0.00 42.48 3.59
5331 6270 5.563842 GGCTGACTCAAGTATTTGAAATCG 58.436 41.667 2.06 0.00 42.48 3.34
5332 6271 5.563842 CGGCTGACTCAAGTATTTGAAATC 58.436 41.667 2.06 4.03 42.48 2.17
5333 6272 4.142600 GCGGCTGACTCAAGTATTTGAAAT 60.143 41.667 0.00 0.00 42.48 2.17
5334 6273 3.188460 GCGGCTGACTCAAGTATTTGAAA 59.812 43.478 0.00 0.00 42.48 2.69
5335 6274 2.742053 GCGGCTGACTCAAGTATTTGAA 59.258 45.455 0.00 0.00 42.48 2.69
5336 6275 2.289382 TGCGGCTGACTCAAGTATTTGA 60.289 45.455 0.00 0.34 40.92 2.69
5337 6276 2.076100 TGCGGCTGACTCAAGTATTTG 58.924 47.619 0.00 0.00 35.57 2.32
5338 6277 2.472695 TGCGGCTGACTCAAGTATTT 57.527 45.000 0.00 0.00 0.00 1.40
5339 6278 2.283298 CATGCGGCTGACTCAAGTATT 58.717 47.619 0.00 0.00 0.00 1.89
5340 6279 1.208052 ACATGCGGCTGACTCAAGTAT 59.792 47.619 0.00 0.00 0.00 2.12
5341 6280 0.608130 ACATGCGGCTGACTCAAGTA 59.392 50.000 0.00 0.00 0.00 2.24
5342 6281 0.952497 CACATGCGGCTGACTCAAGT 60.952 55.000 0.00 0.00 0.00 3.16
5343 6282 0.952497 ACACATGCGGCTGACTCAAG 60.952 55.000 0.00 0.00 0.00 3.02
5344 6283 0.534877 AACACATGCGGCTGACTCAA 60.535 50.000 0.00 0.00 0.00 3.02
5345 6284 1.071299 AACACATGCGGCTGACTCA 59.929 52.632 0.00 0.00 0.00 3.41
5346 6285 1.230635 ACAACACATGCGGCTGACTC 61.231 55.000 0.00 0.00 0.00 3.36
5347 6286 1.227943 ACAACACATGCGGCTGACT 60.228 52.632 0.00 0.00 0.00 3.41
5348 6287 1.207593 GACAACACATGCGGCTGAC 59.792 57.895 0.00 0.00 0.00 3.51
5349 6288 0.950555 GAGACAACACATGCGGCTGA 60.951 55.000 0.00 0.00 0.00 4.26
5350 6289 1.229975 TGAGACAACACATGCGGCTG 61.230 55.000 0.00 0.00 0.00 4.85
5351 6290 0.321919 ATGAGACAACACATGCGGCT 60.322 50.000 0.00 0.00 0.00 5.52
5352 6291 0.179181 CATGAGACAACACATGCGGC 60.179 55.000 0.00 0.00 38.00 6.53
5353 6292 3.982213 CATGAGACAACACATGCGG 57.018 52.632 0.00 0.00 38.00 5.69
5356 6295 2.551032 ACAGTGCATGAGACAACACATG 59.449 45.455 0.00 0.00 44.04 3.21
5357 6296 2.551032 CACAGTGCATGAGACAACACAT 59.449 45.455 0.00 0.00 35.47 3.21
5358 6297 1.941975 CACAGTGCATGAGACAACACA 59.058 47.619 0.00 0.00 35.47 3.72
5359 6298 1.334419 GCACAGTGCATGAGACAACAC 60.334 52.381 21.22 0.00 44.26 3.32
5360 6299 0.946528 GCACAGTGCATGAGACAACA 59.053 50.000 21.22 0.00 44.26 3.33
5361 6300 0.110509 CGCACAGTGCATGAGACAAC 60.111 55.000 25.19 0.00 45.36 3.32
5362 6301 1.844771 GCGCACAGTGCATGAGACAA 61.845 55.000 25.19 0.00 45.36 3.18
5363 6302 2.319841 GCGCACAGTGCATGAGACA 61.320 57.895 25.19 0.00 45.36 3.41
5364 6303 2.477845 GCGCACAGTGCATGAGAC 59.522 61.111 25.19 3.40 45.36 3.36
5365 6304 2.736579 AAGGCGCACAGTGCATGAGA 62.737 55.000 25.19 0.00 45.36 3.27
5366 6305 2.249557 GAAGGCGCACAGTGCATGAG 62.250 60.000 25.19 9.91 45.36 2.90
5367 6306 2.281692 AAGGCGCACAGTGCATGA 60.282 55.556 25.19 0.00 45.36 3.07
5368 6307 2.177531 GAAGGCGCACAGTGCATG 59.822 61.111 25.19 11.01 45.36 4.06
5369 6308 2.281692 TGAAGGCGCACAGTGCAT 60.282 55.556 25.19 7.69 45.36 3.96
5370 6309 2.974148 CTGAAGGCGCACAGTGCA 60.974 61.111 25.19 3.55 45.36 4.57
5371 6310 4.395583 GCTGAAGGCGCACAGTGC 62.396 66.667 16.21 16.21 40.69 4.40
5380 6319 1.538047 TGTTGGATGAAGCTGAAGGC 58.462 50.000 0.00 0.00 42.19 4.35
5381 6320 3.508793 ACATTGTTGGATGAAGCTGAAGG 59.491 43.478 0.00 0.00 0.00 3.46
5382 6321 4.778534 ACATTGTTGGATGAAGCTGAAG 57.221 40.909 0.00 0.00 0.00 3.02
5383 6322 6.198650 CATACATTGTTGGATGAAGCTGAA 57.801 37.500 0.00 0.00 45.72 3.02
5384 6323 5.823209 CATACATTGTTGGATGAAGCTGA 57.177 39.130 0.00 0.00 45.72 4.26
5391 6330 8.797215 CAATTTACGTTCATACATTGTTGGATG 58.203 33.333 0.00 0.00 44.42 3.51
5392 6331 7.487829 GCAATTTACGTTCATACATTGTTGGAT 59.512 33.333 0.00 0.00 0.00 3.41
5393 6332 6.804295 GCAATTTACGTTCATACATTGTTGGA 59.196 34.615 0.00 0.00 0.00 3.53
5394 6333 6.806249 AGCAATTTACGTTCATACATTGTTGG 59.194 34.615 0.00 0.00 0.00 3.77
5395 6334 7.795431 AGCAATTTACGTTCATACATTGTTG 57.205 32.000 0.00 0.00 0.00 3.33
5396 6335 7.696453 GCTAGCAATTTACGTTCATACATTGTT 59.304 33.333 10.63 0.00 0.00 2.83
5397 6336 7.186804 GCTAGCAATTTACGTTCATACATTGT 58.813 34.615 10.63 0.00 0.00 2.71
5398 6337 6.632834 GGCTAGCAATTTACGTTCATACATTG 59.367 38.462 18.24 0.00 0.00 2.82
5399 6338 6.238648 GGGCTAGCAATTTACGTTCATACATT 60.239 38.462 18.24 0.00 0.00 2.71
5400 6339 5.238650 GGGCTAGCAATTTACGTTCATACAT 59.761 40.000 18.24 0.00 0.00 2.29
5401 6340 4.573201 GGGCTAGCAATTTACGTTCATACA 59.427 41.667 18.24 0.00 0.00 2.29
5402 6341 4.814771 AGGGCTAGCAATTTACGTTCATAC 59.185 41.667 18.24 0.00 0.00 2.39
5403 6342 5.031066 AGGGCTAGCAATTTACGTTCATA 57.969 39.130 18.24 0.00 0.00 2.15
5404 6343 3.886123 AGGGCTAGCAATTTACGTTCAT 58.114 40.909 18.24 0.00 0.00 2.57
5405 6344 3.343941 AGGGCTAGCAATTTACGTTCA 57.656 42.857 18.24 0.00 0.00 3.18
5406 6345 4.874396 ACTAAGGGCTAGCAATTTACGTTC 59.126 41.667 18.24 0.00 0.00 3.95
5407 6346 4.840271 ACTAAGGGCTAGCAATTTACGTT 58.160 39.130 18.24 8.17 0.00 3.99
5408 6347 4.482952 ACTAAGGGCTAGCAATTTACGT 57.517 40.909 18.24 8.58 0.00 3.57
5409 6348 4.873827 TGAACTAAGGGCTAGCAATTTACG 59.126 41.667 18.24 8.06 0.00 3.18
5410 6349 6.753107 TTGAACTAAGGGCTAGCAATTTAC 57.247 37.500 18.24 0.00 0.00 2.01
5411 6350 6.321181 CCATTGAACTAAGGGCTAGCAATTTA 59.679 38.462 18.24 10.33 32.84 1.40
5412 6351 5.127682 CCATTGAACTAAGGGCTAGCAATTT 59.872 40.000 18.24 9.71 32.84 1.82
5413 6352 4.646492 CCATTGAACTAAGGGCTAGCAATT 59.354 41.667 18.24 12.65 32.84 2.32
5414 6353 4.210331 CCATTGAACTAAGGGCTAGCAAT 58.790 43.478 18.24 4.15 32.84 3.56
5415 6354 3.010138 ACCATTGAACTAAGGGCTAGCAA 59.990 43.478 18.24 0.00 43.99 3.91
5416 6355 2.576191 ACCATTGAACTAAGGGCTAGCA 59.424 45.455 18.24 0.00 43.99 3.49
5417 6356 3.283259 ACCATTGAACTAAGGGCTAGC 57.717 47.619 6.04 6.04 43.99 3.42
5418 6357 4.381411 GCTACCATTGAACTAAGGGCTAG 58.619 47.826 0.00 0.00 43.99 3.42
5419 6358 3.181469 CGCTACCATTGAACTAAGGGCTA 60.181 47.826 0.00 0.00 43.99 3.93
5420 6359 2.420129 CGCTACCATTGAACTAAGGGCT 60.420 50.000 0.00 0.00 43.99 5.19
5421 6360 1.940613 CGCTACCATTGAACTAAGGGC 59.059 52.381 0.00 0.00 43.99 5.19
5422 6361 1.940613 GCGCTACCATTGAACTAAGGG 59.059 52.381 0.00 0.00 45.61 3.95
5423 6362 1.593006 CGCGCTACCATTGAACTAAGG 59.407 52.381 5.56 0.00 0.00 2.69
5424 6363 2.029244 CACGCGCTACCATTGAACTAAG 59.971 50.000 5.73 0.00 0.00 2.18
5425 6364 1.996898 CACGCGCTACCATTGAACTAA 59.003 47.619 5.73 0.00 0.00 2.24
5426 6365 1.202817 TCACGCGCTACCATTGAACTA 59.797 47.619 5.73 0.00 0.00 2.24
5427 6366 0.037697 TCACGCGCTACCATTGAACT 60.038 50.000 5.73 0.00 0.00 3.01
5428 6367 0.094730 GTCACGCGCTACCATTGAAC 59.905 55.000 5.73 0.00 0.00 3.18
5429 6368 0.037697 AGTCACGCGCTACCATTGAA 60.038 50.000 5.73 0.00 0.00 2.69
5430 6369 0.457853 GAGTCACGCGCTACCATTGA 60.458 55.000 5.73 0.00 0.00 2.57
5431 6370 0.735978 TGAGTCACGCGCTACCATTG 60.736 55.000 5.73 0.00 0.00 2.82
5432 6371 0.458543 CTGAGTCACGCGCTACCATT 60.459 55.000 5.73 0.00 0.00 3.16
5433 6372 1.139734 CTGAGTCACGCGCTACCAT 59.860 57.895 5.73 0.00 0.00 3.55
5434 6373 2.566529 CTGAGTCACGCGCTACCA 59.433 61.111 5.73 4.37 0.00 3.25
5435 6374 2.005960 ATCCTGAGTCACGCGCTACC 62.006 60.000 5.73 0.00 0.00 3.18
5436 6375 0.867753 CATCCTGAGTCACGCGCTAC 60.868 60.000 5.73 4.31 0.00 3.58
5437 6376 1.433471 CATCCTGAGTCACGCGCTA 59.567 57.895 5.73 0.00 0.00 4.26
5438 6377 2.182791 CATCCTGAGTCACGCGCT 59.817 61.111 5.73 0.00 0.00 5.92
5439 6378 2.887568 CCATCCTGAGTCACGCGC 60.888 66.667 5.73 0.00 0.00 6.86
5440 6379 2.202797 CCCATCCTGAGTCACGCG 60.203 66.667 3.53 3.53 0.00 6.01
5441 6380 0.179000 ATTCCCATCCTGAGTCACGC 59.821 55.000 0.00 0.00 0.00 5.34
5442 6381 1.473965 CCATTCCCATCCTGAGTCACG 60.474 57.143 0.00 0.00 0.00 4.35
5443 6382 1.133976 CCCATTCCCATCCTGAGTCAC 60.134 57.143 0.00 0.00 0.00 3.67
5444 6383 1.216064 CCCATTCCCATCCTGAGTCA 58.784 55.000 0.00 0.00 0.00 3.41
5445 6384 0.179006 GCCCATTCCCATCCTGAGTC 60.179 60.000 0.00 0.00 0.00 3.36
5446 6385 1.649271 GGCCCATTCCCATCCTGAGT 61.649 60.000 0.00 0.00 0.00 3.41
5447 6386 1.152368 GGCCCATTCCCATCCTGAG 59.848 63.158 0.00 0.00 0.00 3.35
5448 6387 2.756042 CGGCCCATTCCCATCCTGA 61.756 63.158 0.00 0.00 0.00 3.86
5449 6388 2.203394 CGGCCCATTCCCATCCTG 60.203 66.667 0.00 0.00 0.00 3.86
5450 6389 2.368192 TCGGCCCATTCCCATCCT 60.368 61.111 0.00 0.00 0.00 3.24
5451 6390 2.203351 GTCGGCCCATTCCCATCC 60.203 66.667 0.00 0.00 0.00 3.51
5452 6391 2.203351 GGTCGGCCCATTCCCATC 60.203 66.667 0.00 0.00 0.00 3.51
5466 6405 4.410400 CAAGGCCAGGGTCGGGTC 62.410 72.222 5.01 0.00 0.00 4.46
5469 6408 4.410400 GTCCAAGGCCAGGGTCGG 62.410 72.222 5.01 0.00 0.00 4.79
5470 6409 4.410400 GGTCCAAGGCCAGGGTCG 62.410 72.222 5.01 0.00 0.00 4.79
5471 6410 2.936032 AGGTCCAAGGCCAGGGTC 60.936 66.667 5.01 3.17 0.00 4.46
5472 6411 3.260100 CAGGTCCAAGGCCAGGGT 61.260 66.667 5.01 0.00 0.00 4.34
5473 6412 4.052518 CCAGGTCCAAGGCCAGGG 62.053 72.222 5.01 5.82 0.00 4.45
5474 6413 4.748144 GCCAGGTCCAAGGCCAGG 62.748 72.222 5.01 6.73 45.18 4.45
5479 6418 2.311854 ATGAGGGCCAGGTCCAAGG 61.312 63.158 14.32 0.00 0.00 3.61
5480 6419 1.077212 CATGAGGGCCAGGTCCAAG 60.077 63.158 14.32 0.00 0.00 3.61
5481 6420 2.615465 CCATGAGGGCCAGGTCCAA 61.615 63.158 14.32 0.00 0.00 3.53
5482 6421 3.016971 CCATGAGGGCCAGGTCCA 61.017 66.667 14.32 0.00 0.00 4.02
5483 6422 3.017581 ACCATGAGGGCCAGGTCC 61.018 66.667 0.00 0.00 42.05 4.46
5484 6423 2.592308 GACCATGAGGGCCAGGTC 59.408 66.667 17.62 17.62 43.18 3.85
5490 6429 2.818132 CCTCGAGACCATGAGGGC 59.182 66.667 15.71 0.00 46.55 5.19
5493 6432 0.467384 ATTGGCCTCGAGACCATGAG 59.533 55.000 21.92 0.00 35.42 2.90
5494 6433 0.911769 AATTGGCCTCGAGACCATGA 59.088 50.000 21.92 8.03 35.42 3.07
5495 6434 1.755179 AAATTGGCCTCGAGACCATG 58.245 50.000 21.92 0.84 35.42 3.66
5496 6435 3.136443 TCATAAATTGGCCTCGAGACCAT 59.864 43.478 21.92 9.44 35.42 3.55
5497 6436 2.503765 TCATAAATTGGCCTCGAGACCA 59.496 45.455 17.41 17.41 0.00 4.02
5498 6437 3.134458 CTCATAAATTGGCCTCGAGACC 58.866 50.000 15.71 13.46 0.00 3.85
5499 6438 3.134458 CCTCATAAATTGGCCTCGAGAC 58.866 50.000 15.71 0.57 0.00 3.36
5500 6439 2.485479 GCCTCATAAATTGGCCTCGAGA 60.485 50.000 15.71 0.00 40.71 4.04
5501 6440 1.876156 GCCTCATAAATTGGCCTCGAG 59.124 52.381 5.13 5.13 40.71 4.04
5502 6441 1.967319 GCCTCATAAATTGGCCTCGA 58.033 50.000 3.32 0.00 40.71 4.04
5507 6446 0.385390 CCGTGGCCTCATAAATTGGC 59.615 55.000 3.32 0.00 45.42 4.52
5508 6447 1.032014 CCCGTGGCCTCATAAATTGG 58.968 55.000 3.32 0.00 0.00 3.16
5509 6448 1.676006 GACCCGTGGCCTCATAAATTG 59.324 52.381 3.32 0.00 0.00 2.32
5510 6449 1.745827 CGACCCGTGGCCTCATAAATT 60.746 52.381 3.32 0.00 0.00 1.82
5511 6450 0.179056 CGACCCGTGGCCTCATAAAT 60.179 55.000 3.32 0.00 0.00 1.40
5512 6451 1.219664 CGACCCGTGGCCTCATAAA 59.780 57.895 3.32 0.00 0.00 1.40
5513 6452 1.683025 TCGACCCGTGGCCTCATAA 60.683 57.895 3.32 0.00 0.00 1.90
5514 6453 2.043752 TCGACCCGTGGCCTCATA 60.044 61.111 3.32 0.00 0.00 2.15
5515 6454 3.771160 GTCGACCCGTGGCCTCAT 61.771 66.667 3.51 0.00 0.00 2.90
5526 6465 3.930229 GGCATTTTAAAAATGGGTCGACC 59.070 43.478 27.04 27.04 40.81 4.79
5527 6466 4.561105 TGGCATTTTAAAAATGGGTCGAC 58.439 39.130 7.13 7.13 0.00 4.20
5528 6467 4.873746 TGGCATTTTAAAAATGGGTCGA 57.126 36.364 4.44 0.00 0.00 4.20
5529 6468 5.163774 CCATTGGCATTTTAAAAATGGGTCG 60.164 40.000 16.15 1.69 42.28 4.79
5530 6469 6.193514 CCATTGGCATTTTAAAAATGGGTC 57.806 37.500 16.15 5.66 42.28 4.46
5565 6504 1.579932 CGACCCGAGATACCCATCG 59.420 63.158 0.00 0.00 36.20 3.84
5566 6505 1.965219 CCGACCCGAGATACCCATC 59.035 63.158 0.00 0.00 0.00 3.51
5567 6506 2.207924 GCCGACCCGAGATACCCAT 61.208 63.158 0.00 0.00 0.00 4.00
5568 6507 2.836360 GCCGACCCGAGATACCCA 60.836 66.667 0.00 0.00 0.00 4.51
5569 6508 2.703675 TAGGCCGACCCGAGATACCC 62.704 65.000 0.00 0.00 39.21 3.69
5570 6509 0.825010 TTAGGCCGACCCGAGATACC 60.825 60.000 0.00 0.00 39.21 2.73
5571 6510 1.035139 TTTAGGCCGACCCGAGATAC 58.965 55.000 0.00 0.00 39.21 2.24
5572 6511 2.005370 ATTTAGGCCGACCCGAGATA 57.995 50.000 0.00 0.00 39.21 1.98
5573 6512 1.070289 GAATTTAGGCCGACCCGAGAT 59.930 52.381 0.00 0.00 39.21 2.75
5574 6513 0.462789 GAATTTAGGCCGACCCGAGA 59.537 55.000 0.00 0.00 39.21 4.04
5575 6514 0.464452 AGAATTTAGGCCGACCCGAG 59.536 55.000 0.00 0.00 39.21 4.63
5576 6515 1.684983 CTAGAATTTAGGCCGACCCGA 59.315 52.381 0.00 0.00 39.21 5.14
5577 6516 1.411612 ACTAGAATTTAGGCCGACCCG 59.588 52.381 0.00 0.00 39.21 5.28
5578 6517 3.203716 CAACTAGAATTTAGGCCGACCC 58.796 50.000 0.00 0.00 36.11 4.46
5579 6518 3.870274 ACAACTAGAATTTAGGCCGACC 58.130 45.455 0.00 0.00 0.00 4.79
5580 6519 6.985059 AGATAACAACTAGAATTTAGGCCGAC 59.015 38.462 0.00 0.00 0.00 4.79
5581 6520 7.120923 AGATAACAACTAGAATTTAGGCCGA 57.879 36.000 0.00 0.00 0.00 5.54
5582 6521 8.142551 ACTAGATAACAACTAGAATTTAGGCCG 58.857 37.037 0.00 0.00 39.48 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.