Multiple sequence alignment - TraesCS3B01G192100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G192100 chr3B 100.000 6253 0 0 1 6253 205774406 205780658 0.000000e+00 11548.0
1 TraesCS3B01G192100 chr3B 89.373 1929 125 41 614 2507 207733281 207735164 0.000000e+00 2353.0
2 TraesCS3B01G192100 chr3B 84.196 1449 189 29 995 2418 207738762 207740195 0.000000e+00 1371.0
3 TraesCS3B01G192100 chr3B 82.473 1221 182 23 992 2193 207291786 207292993 0.000000e+00 1040.0
4 TraesCS3B01G192100 chr3B 88.736 728 41 14 2538 3256 207735163 207735858 0.000000e+00 852.0
5 TraesCS3B01G192100 chr3B 87.709 537 40 13 3262 3786 207735946 207736468 2.490000e-168 603.0
6 TraesCS3B01G192100 chr3B 81.250 400 53 19 4341 4724 239915970 239915577 2.830000e-78 303.0
7 TraesCS3B01G192100 chr3B 95.041 121 6 0 4949 5069 368604055 368604175 2.300000e-44 191.0
8 TraesCS3B01G192100 chr3B 85.030 167 13 7 2587 2748 396271872 396272031 6.490000e-35 159.0
9 TraesCS3B01G192100 chr3B 91.954 87 7 0 4755 4841 239915502 239915416 8.510000e-24 122.0
10 TraesCS3B01G192100 chr3D 97.749 2754 43 7 595 3340 148700658 148697916 0.000000e+00 4724.0
11 TraesCS3B01G192100 chr3D 95.382 1191 52 3 5066 6253 148696219 148695029 0.000000e+00 1892.0
12 TraesCS3B01G192100 chr3D 97.461 1024 24 2 3933 4954 148697239 148696216 0.000000e+00 1746.0
13 TraesCS3B01G192100 chr3D 84.397 1128 160 13 989 2104 148336795 148335672 0.000000e+00 1094.0
14 TraesCS3B01G192100 chr3D 82.673 1212 191 17 992 2193 143948652 143949854 0.000000e+00 1057.0
15 TraesCS3B01G192100 chr3D 92.308 598 40 5 1 594 148709519 148708924 0.000000e+00 845.0
16 TraesCS3B01G192100 chr3D 97.471 435 11 0 3442 3876 148697670 148697236 0.000000e+00 743.0
17 TraesCS3B01G192100 chr3D 83.819 309 38 8 4341 4646 163130681 163130382 3.690000e-72 283.0
18 TraesCS3B01G192100 chr3D 85.185 162 15 3 2591 2748 170552261 170552105 2.330000e-34 158.0
19 TraesCS3B01G192100 chr3D 85.185 162 13 6 2591 2748 322435290 322435444 8.390000e-34 156.0
20 TraesCS3B01G192100 chr3D 91.954 87 7 0 4755 4841 163130235 163130149 8.510000e-24 122.0
21 TraesCS3B01G192100 chr3A 91.702 1434 88 14 838 2265 164610793 164612201 0.000000e+00 1960.0
22 TraesCS3B01G192100 chr3A 83.800 1358 178 22 1008 2349 164614430 164615761 0.000000e+00 1251.0
23 TraesCS3B01G192100 chr3A 83.347 1213 184 16 992 2193 163793045 163794250 0.000000e+00 1105.0
24 TraesCS3B01G192100 chr3A 78.208 413 53 23 4330 4713 195464758 195464354 4.880000e-56 230.0
25 TraesCS3B01G192100 chr3A 95.652 138 6 0 3649 3786 164612343 164612480 8.160000e-54 222.0
26 TraesCS3B01G192100 chr3A 96.262 107 4 0 3546 3652 164612202 164612308 6.440000e-40 176.0
27 TraesCS3B01G192100 chr3A 81.092 238 16 17 614 834 164610226 164610451 5.020000e-36 163.0
28 TraesCS3B01G192100 chr3A 90.805 87 7 1 4755 4840 195464266 195464180 1.420000e-21 115.0
29 TraesCS3B01G192100 chr3A 74.510 153 29 9 275 423 504805907 504805761 2.430000e-04 58.4
30 TraesCS3B01G192100 chr3A 77.551 98 17 5 327 422 534177569 534177663 3.000000e-03 54.7
31 TraesCS3B01G192100 chr6D 81.324 423 63 11 3 420 437901171 437901582 4.670000e-86 329.0
32 TraesCS3B01G192100 chr6D 83.824 68 10 1 366 432 158825912 158825845 5.230000e-06 63.9
33 TraesCS3B01G192100 chr5A 83.862 347 49 6 1 343 496283973 496284316 2.170000e-84 324.0
34 TraesCS3B01G192100 chr5A 86.538 52 7 0 371 422 31463542 31463593 2.430000e-04 58.4
35 TraesCS3B01G192100 chr5A 78.000 100 15 7 327 423 475524357 475524452 8.760000e-04 56.5
36 TraesCS3B01G192100 chr6A 80.806 422 71 7 4 420 586114506 586114922 7.820000e-84 322.0
37 TraesCS3B01G192100 chr6A 77.320 97 19 3 327 422 590068239 590068333 3.000000e-03 54.7
38 TraesCS3B01G192100 chr4B 96.581 117 4 0 4953 5069 649268495 649268379 1.780000e-45 195.0
39 TraesCS3B01G192100 chr4B 93.548 124 7 1 4946 5069 457415573 457415451 3.850000e-42 183.0
40 TraesCS3B01G192100 chr4A 95.041 121 6 0 4952 5072 720134445 720134565 2.300000e-44 191.0
41 TraesCS3B01G192100 chr4A 90.909 132 12 0 4946 5077 702148916 702148785 1.790000e-40 178.0
42 TraesCS3B01G192100 chr7B 94.309 123 7 0 4950 5072 252178053 252178175 8.280000e-44 189.0
43 TraesCS3B01G192100 chr4D 93.651 126 7 1 4949 5074 428946375 428946499 2.980000e-43 187.0
44 TraesCS3B01G192100 chr4D 85.093 161 12 8 2593 2748 74079351 74079504 3.020000e-33 154.0
45 TraesCS3B01G192100 chr1B 94.262 122 6 1 4948 5069 541470952 541471072 1.070000e-42 185.0
46 TraesCS3B01G192100 chr7D 89.855 138 14 0 4940 5077 182605337 182605474 1.790000e-40 178.0
47 TraesCS3B01G192100 chr7A 85.897 156 17 4 2593 2748 375877665 375877515 1.800000e-35 161.0
48 TraesCS3B01G192100 chr7A 76.336 131 28 3 293 422 641377255 641377127 4.050000e-07 67.6
49 TraesCS3B01G192100 chr2A 85.987 157 13 7 2593 2749 690522468 690522321 6.490000e-35 159.0
50 TraesCS3B01G192100 chr5B 85.256 156 16 5 2593 2748 172625337 172625189 3.020000e-33 154.0
51 TraesCS3B01G192100 chr2B 78.571 98 19 2 327 423 154525439 154525535 5.230000e-06 63.9
52 TraesCS3B01G192100 chr2B 100.000 28 0 0 160 187 317244523 317244550 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G192100 chr3B 205774406 205780658 6252 False 11548.00 11548 100.00000 1 6253 1 chr3B.!!$F1 6252
1 TraesCS3B01G192100 chr3B 207733281 207740195 6914 False 1294.75 2353 87.50350 614 3786 4 chr3B.!!$F5 3172
2 TraesCS3B01G192100 chr3B 207291786 207292993 1207 False 1040.00 1040 82.47300 992 2193 1 chr3B.!!$F2 1201
3 TraesCS3B01G192100 chr3B 239915416 239915970 554 True 212.50 303 86.60200 4341 4841 2 chr3B.!!$R1 500
4 TraesCS3B01G192100 chr3D 148695029 148700658 5629 True 2276.25 4724 97.01575 595 6253 4 chr3D.!!$R4 5658
5 TraesCS3B01G192100 chr3D 148335672 148336795 1123 True 1094.00 1094 84.39700 989 2104 1 chr3D.!!$R1 1115
6 TraesCS3B01G192100 chr3D 143948652 143949854 1202 False 1057.00 1057 82.67300 992 2193 1 chr3D.!!$F1 1201
7 TraesCS3B01G192100 chr3D 148708924 148709519 595 True 845.00 845 92.30800 1 594 1 chr3D.!!$R2 593
8 TraesCS3B01G192100 chr3D 163130149 163130681 532 True 202.50 283 87.88650 4341 4841 2 chr3D.!!$R5 500
9 TraesCS3B01G192100 chr3A 163793045 163794250 1205 False 1105.00 1105 83.34700 992 2193 1 chr3A.!!$F1 1201
10 TraesCS3B01G192100 chr3A 164610226 164615761 5535 False 754.40 1960 89.70160 614 3786 5 chr3A.!!$F3 3172

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.454600 GTCTCACATCTTACCGCCGA 59.545 55.0 0.0 0.0 0.00 5.54 F
255 256 0.602638 TGACGGCTGTTAGTTGGCTG 60.603 55.0 0.0 0.0 38.21 4.85 F
433 436 0.606944 AATTTGCCGTTACCCGCTCA 60.607 50.0 0.0 0.0 34.38 4.26 F
1482 1853 0.709992 ACCTCCTCTGCTTCTCCTCT 59.290 55.0 0.0 0.0 0.00 3.69 F
2364 7538 0.185901 TGGGCTTCTCATATTGGGGC 59.814 55.0 0.0 0.0 0.00 5.80 F
3366 8543 0.694771 AGACTTGCAATGGGCTGAGA 59.305 50.0 0.0 0.0 45.15 3.27 F
4967 13781 0.038744 AAAGTACTCCCTCCGTCCGA 59.961 55.0 0.0 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1724 0.464036 GGTGCATGATGTACTCGGGA 59.536 55.000 13.19 0.0 33.35 5.14 R
1677 2054 0.542333 GTAGTCCCCAAGCTTCCCTC 59.458 60.000 0.00 0.0 0.00 4.30 R
2265 7439 0.250513 ATCCTGGAAGTTGGACGCTC 59.749 55.000 0.00 0.0 34.90 5.03 R
3347 8524 0.694771 TCTCAGCCCATTGCAAGTCT 59.305 50.000 4.94 0.0 44.83 3.24 R
4331 10103 1.153628 GGGACACGAGACGATTGGG 60.154 63.158 0.00 0.0 0.00 4.12 R
5046 13860 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
6146 14961 2.891112 ACGGTTGTAACGTTCTTGTGA 58.109 42.857 2.82 0.0 42.70 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.043673 ACGAAAGAGATCCGAGGGGG 61.044 60.000 0.00 0.00 37.02 5.40
65 66 3.023735 AGGGGGACAATGGAGGGC 61.024 66.667 0.00 0.00 0.00 5.19
66 67 3.346734 GGGGGACAATGGAGGGCA 61.347 66.667 0.00 0.00 0.00 5.36
94 95 2.093106 GAGTAAGAACAGAGAGGGCGA 58.907 52.381 0.00 0.00 0.00 5.54
96 97 0.809385 TAAGAACAGAGAGGGCGACG 59.191 55.000 0.00 0.00 0.00 5.12
162 163 4.455877 GCATTATATGTGCCTCAACCCTAC 59.544 45.833 4.13 0.00 36.61 3.18
163 164 5.746065 GCATTATATGTGCCTCAACCCTACT 60.746 44.000 4.13 0.00 36.61 2.57
200 201 2.361438 GGTAGGGTCTCACATCTTACCG 59.639 54.545 0.00 0.00 32.53 4.02
204 205 0.454600 GTCTCACATCTTACCGCCGA 59.545 55.000 0.00 0.00 0.00 5.54
210 211 1.202533 ACATCTTACCGCCGAATCCTG 60.203 52.381 0.00 0.00 0.00 3.86
214 215 2.862674 TTACCGCCGAATCCTGTGGC 62.863 60.000 0.00 0.00 45.39 5.01
219 220 3.369381 CCGAATCCTGTGGCAGTAG 57.631 57.895 0.00 0.00 0.00 2.57
224 225 1.330655 ATCCTGTGGCAGTAGGGTCG 61.331 60.000 15.52 0.00 34.76 4.79
255 256 0.602638 TGACGGCTGTTAGTTGGCTG 60.603 55.000 0.00 0.00 38.21 4.85
283 284 0.940047 GATTAGTCAGCTACCGCCGC 60.940 60.000 0.00 0.00 36.60 6.53
313 314 2.431057 GCGGTAGCCTATGCATACCTAT 59.569 50.000 12.60 0.00 38.27 2.57
345 346 1.958579 GTGGCGGTAAGAAAAAGGGTT 59.041 47.619 0.00 0.00 0.00 4.11
352 353 6.218019 GCGGTAAGAAAAAGGGTTAAAACAT 58.782 36.000 0.00 0.00 0.00 2.71
400 403 9.846248 CAGAATTGGTTAAACTATCTGAAAAGG 57.154 33.333 12.54 0.00 35.91 3.11
415 418 5.047943 TCTGAAAAGGGTCAAAACACGAAAA 60.048 36.000 0.00 0.00 32.44 2.29
421 424 3.001838 GGGTCAAAACACGAAAATTTGCC 59.998 43.478 0.00 1.84 34.77 4.52
433 436 0.606944 AATTTGCCGTTACCCGCTCA 60.607 50.000 0.00 0.00 34.38 4.26
479 482 3.771216 AGATTTGACTCCAAGGCAATGT 58.229 40.909 0.00 0.00 43.87 2.71
486 489 4.458989 TGACTCCAAGGCAATGTTATGAAC 59.541 41.667 0.00 0.00 23.92 3.18
549 553 4.282195 AGGTTTTCATCGAGAGACAAGAGT 59.718 41.667 0.00 0.00 46.97 3.24
569 573 5.185635 AGAGTTTGATGTTGAGAGAGAGAGG 59.814 44.000 0.00 0.00 0.00 3.69
723 731 3.181465 GCCTATCTCTTCCCGTTTCATCA 60.181 47.826 0.00 0.00 0.00 3.07
950 1315 3.793888 CCGGCTTCCCTACCCACC 61.794 72.222 0.00 0.00 0.00 4.61
1221 1592 2.288643 GGCCTCCTCCTCCTCCAT 59.711 66.667 0.00 0.00 0.00 3.41
1353 1724 4.129148 GCCCTCCCGCTTCCCAAT 62.129 66.667 0.00 0.00 0.00 3.16
1482 1853 0.709992 ACCTCCTCTGCTTCTCCTCT 59.290 55.000 0.00 0.00 0.00 3.69
1548 1925 4.447342 CGCCCCTTGAGCCCCAAT 62.447 66.667 0.00 0.00 33.68 3.16
1677 2054 2.100991 GGCAAGGCGCTCAAATCG 59.899 61.111 7.64 0.00 41.91 3.34
1695 2072 0.976073 CGAGGGAAGCTTGGGGACTA 60.976 60.000 2.10 0.00 0.00 2.59
1746 2123 4.090057 GGCAAGCTGCGGTTCGTC 62.090 66.667 0.00 0.00 46.21 4.20
1758 2135 0.989890 GGTTCGTCGACATGTACAGC 59.010 55.000 17.16 0.00 0.00 4.40
2094 7268 3.314331 CTGCCACGGACTCCCTGT 61.314 66.667 0.00 0.00 0.00 4.00
2104 7278 3.028850 CGGACTCCCTGTTCAGGTAATA 58.971 50.000 16.33 0.57 0.00 0.98
2105 7279 3.449737 CGGACTCCCTGTTCAGGTAATAA 59.550 47.826 16.33 0.00 0.00 1.40
2107 7281 5.612351 GGACTCCCTGTTCAGGTAATAATC 58.388 45.833 16.33 6.28 0.00 1.75
2108 7282 5.277857 ACTCCCTGTTCAGGTAATAATCG 57.722 43.478 16.33 0.67 0.00 3.34
2110 7284 5.895534 ACTCCCTGTTCAGGTAATAATCGTA 59.104 40.000 16.33 0.00 0.00 3.43
2111 7285 6.381994 ACTCCCTGTTCAGGTAATAATCGTAA 59.618 38.462 16.33 0.00 0.00 3.18
2112 7286 7.070821 ACTCCCTGTTCAGGTAATAATCGTAAT 59.929 37.037 16.33 0.00 0.00 1.89
2212 7386 7.237255 AGAGATCAGAGGTGTATGATGTATGA 58.763 38.462 0.00 0.00 34.67 2.15
2265 7439 2.492019 TGTCGGAGAGAACATATGCG 57.508 50.000 1.58 0.00 36.95 4.73
2318 7492 4.810491 ACCTTGTTTTTGTTAATGCTGCAG 59.190 37.500 10.11 10.11 0.00 4.41
2356 7530 6.252599 TGATAAGTGTAATGGGCTTCTCAT 57.747 37.500 0.00 0.00 0.00 2.90
2364 7538 0.185901 TGGGCTTCTCATATTGGGGC 59.814 55.000 0.00 0.00 0.00 5.80
2396 7570 4.900635 AAGCACTTCGAGTTTCAATGTT 57.099 36.364 0.00 0.00 0.00 2.71
2491 7665 7.870826 AGTTAAAAATGCCAATTTTGCCTTAC 58.129 30.769 0.75 0.00 43.63 2.34
2494 7668 4.573021 AATGCCAATTTTGCCTTACCAT 57.427 36.364 0.00 0.00 0.00 3.55
2677 7851 2.287915 ACATGTTTCAGCGTGTTCACTC 59.712 45.455 0.00 0.00 35.28 3.51
2689 7863 3.748048 CGTGTTCACTCATTTCAGTCCAT 59.252 43.478 1.53 0.00 0.00 3.41
2900 8074 4.587684 ACACTGTAGCCCCATATACACTAC 59.412 45.833 0.00 0.00 35.00 2.73
2901 8075 4.587262 CACTGTAGCCCCATATACACTACA 59.413 45.833 0.00 0.00 40.52 2.74
2951 8126 3.784511 ATACTCCAGCTAGTACCGCTA 57.215 47.619 6.92 0.00 34.87 4.26
3099 8275 6.068010 TGGTTTAGACACATCCATTGAACTT 58.932 36.000 0.00 0.00 0.00 2.66
3203 8380 5.846164 ACTACATCAGGTATTCCATCCATGA 59.154 40.000 0.00 0.00 35.89 3.07
3268 8445 7.822334 TTCAAGACTGAAGAAACTCTGTGTTTA 59.178 33.333 7.73 0.00 41.31 2.01
3340 8517 4.881157 ATAGTGACCCCCTGCTATTTTT 57.119 40.909 0.00 0.00 0.00 1.94
3341 8518 2.807676 AGTGACCCCCTGCTATTTTTG 58.192 47.619 0.00 0.00 0.00 2.44
3342 8519 2.110011 AGTGACCCCCTGCTATTTTTGT 59.890 45.455 0.00 0.00 0.00 2.83
3343 8520 2.897326 GTGACCCCCTGCTATTTTTGTT 59.103 45.455 0.00 0.00 0.00 2.83
3344 8521 3.323691 GTGACCCCCTGCTATTTTTGTTT 59.676 43.478 0.00 0.00 0.00 2.83
3345 8522 3.970640 TGACCCCCTGCTATTTTTGTTTT 59.029 39.130 0.00 0.00 0.00 2.43
3346 8523 4.410555 TGACCCCCTGCTATTTTTGTTTTT 59.589 37.500 0.00 0.00 0.00 1.94
3347 8524 5.602978 TGACCCCCTGCTATTTTTGTTTTTA 59.397 36.000 0.00 0.00 0.00 1.52
3348 8525 6.109156 ACCCCCTGCTATTTTTGTTTTTAG 57.891 37.500 0.00 0.00 0.00 1.85
3349 8526 5.841783 ACCCCCTGCTATTTTTGTTTTTAGA 59.158 36.000 0.00 0.00 0.00 2.10
3350 8527 6.163476 CCCCCTGCTATTTTTGTTTTTAGAC 58.837 40.000 0.00 0.00 0.00 2.59
3351 8528 6.014584 CCCCCTGCTATTTTTGTTTTTAGACT 60.015 38.462 0.00 0.00 0.00 3.24
3352 8529 7.441836 CCCCTGCTATTTTTGTTTTTAGACTT 58.558 34.615 0.00 0.00 0.00 3.01
3353 8530 7.384932 CCCCTGCTATTTTTGTTTTTAGACTTG 59.615 37.037 0.00 0.00 0.00 3.16
3354 8531 7.095649 CCCTGCTATTTTTGTTTTTAGACTTGC 60.096 37.037 0.00 0.00 0.00 4.01
3355 8532 7.437862 CCTGCTATTTTTGTTTTTAGACTTGCA 59.562 33.333 0.00 0.00 0.00 4.08
3356 8533 8.709386 TGCTATTTTTGTTTTTAGACTTGCAA 57.291 26.923 0.00 0.00 0.00 4.08
3357 8534 9.323985 TGCTATTTTTGTTTTTAGACTTGCAAT 57.676 25.926 0.00 0.00 0.00 3.56
3358 8535 9.584839 GCTATTTTTGTTTTTAGACTTGCAATG 57.415 29.630 0.00 0.00 0.00 2.82
3360 8537 6.917217 TTTTGTTTTTAGACTTGCAATGGG 57.083 33.333 0.00 0.00 0.00 4.00
3361 8538 3.988819 TGTTTTTAGACTTGCAATGGGC 58.011 40.909 0.00 0.00 45.13 5.36
3362 8539 3.640967 TGTTTTTAGACTTGCAATGGGCT 59.359 39.130 0.00 0.00 45.15 5.19
3363 8540 3.940209 TTTTAGACTTGCAATGGGCTG 57.060 42.857 0.00 0.00 45.15 4.85
3364 8541 2.877097 TTAGACTTGCAATGGGCTGA 57.123 45.000 0.00 0.00 45.15 4.26
3365 8542 2.408271 TAGACTTGCAATGGGCTGAG 57.592 50.000 0.00 0.00 45.15 3.35
3366 8543 0.694771 AGACTTGCAATGGGCTGAGA 59.305 50.000 0.00 0.00 45.15 3.27
3367 8544 1.074405 AGACTTGCAATGGGCTGAGAA 59.926 47.619 0.00 0.00 45.15 2.87
3368 8545 1.888512 GACTTGCAATGGGCTGAGAAA 59.111 47.619 0.00 0.00 45.15 2.52
3369 8546 1.891150 ACTTGCAATGGGCTGAGAAAG 59.109 47.619 0.00 0.00 45.15 2.62
3370 8547 1.891150 CTTGCAATGGGCTGAGAAAGT 59.109 47.619 0.00 0.00 45.15 2.66
3371 8548 2.877097 TGCAATGGGCTGAGAAAGTA 57.123 45.000 0.00 0.00 45.15 2.24
3372 8549 2.715046 TGCAATGGGCTGAGAAAGTAG 58.285 47.619 0.00 0.00 45.15 2.57
3373 8550 2.019984 GCAATGGGCTGAGAAAGTAGG 58.980 52.381 0.00 0.00 40.25 3.18
3374 8551 2.356125 GCAATGGGCTGAGAAAGTAGGA 60.356 50.000 0.00 0.00 40.25 2.94
3375 8552 3.686691 GCAATGGGCTGAGAAAGTAGGAT 60.687 47.826 0.00 0.00 40.25 3.24
3376 8553 4.444876 GCAATGGGCTGAGAAAGTAGGATA 60.445 45.833 0.00 0.00 40.25 2.59
3377 8554 5.747248 GCAATGGGCTGAGAAAGTAGGATAT 60.747 44.000 0.00 0.00 40.25 1.63
3378 8555 6.520742 GCAATGGGCTGAGAAAGTAGGATATA 60.521 42.308 0.00 0.00 40.25 0.86
3379 8556 7.628234 CAATGGGCTGAGAAAGTAGGATATAT 58.372 38.462 0.00 0.00 0.00 0.86
3380 8557 8.762645 CAATGGGCTGAGAAAGTAGGATATATA 58.237 37.037 0.00 0.00 0.00 0.86
3381 8558 7.962995 TGGGCTGAGAAAGTAGGATATATAG 57.037 40.000 0.00 0.00 0.00 1.31
3382 8559 7.479579 TGGGCTGAGAAAGTAGGATATATAGT 58.520 38.462 0.00 0.00 0.00 2.12
3383 8560 7.397476 TGGGCTGAGAAAGTAGGATATATAGTG 59.603 40.741 0.00 0.00 0.00 2.74
3384 8561 7.616150 GGGCTGAGAAAGTAGGATATATAGTGA 59.384 40.741 0.00 0.00 0.00 3.41
3385 8562 9.026121 GGCTGAGAAAGTAGGATATATAGTGAA 57.974 37.037 0.00 0.00 0.00 3.18
3393 8570 9.540538 AAGTAGGATATATAGTGAATCAGCTGT 57.459 33.333 14.67 0.00 0.00 4.40
3394 8571 9.540538 AGTAGGATATATAGTGAATCAGCTGTT 57.459 33.333 14.67 7.43 0.00 3.16
3397 8574 9.760926 AGGATATATAGTGAATCAGCTGTTAGA 57.239 33.333 14.67 0.00 0.00 2.10
3398 8575 9.796120 GGATATATAGTGAATCAGCTGTTAGAC 57.204 37.037 14.67 7.06 0.00 2.59
3402 8579 4.511527 AGTGAATCAGCTGTTAGACATGG 58.488 43.478 14.67 0.00 0.00 3.66
3403 8580 4.019860 AGTGAATCAGCTGTTAGACATGGT 60.020 41.667 14.67 0.00 0.00 3.55
3404 8581 5.187772 AGTGAATCAGCTGTTAGACATGGTA 59.812 40.000 14.67 0.00 0.00 3.25
3405 8582 5.292101 GTGAATCAGCTGTTAGACATGGTAC 59.708 44.000 14.67 0.00 0.00 3.34
3406 8583 5.187772 TGAATCAGCTGTTAGACATGGTACT 59.812 40.000 14.67 0.00 0.00 2.73
3407 8584 6.379988 TGAATCAGCTGTTAGACATGGTACTA 59.620 38.462 14.67 0.00 0.00 1.82
3408 8585 5.578005 TCAGCTGTTAGACATGGTACTAC 57.422 43.478 14.67 0.00 0.00 2.73
3409 8586 5.014202 TCAGCTGTTAGACATGGTACTACA 58.986 41.667 14.67 0.00 0.00 2.74
3410 8587 5.656859 TCAGCTGTTAGACATGGTACTACAT 59.343 40.000 14.67 0.00 0.00 2.29
3411 8588 6.154534 TCAGCTGTTAGACATGGTACTACATT 59.845 38.462 14.67 0.00 0.00 2.71
3412 8589 6.818644 CAGCTGTTAGACATGGTACTACATTT 59.181 38.462 5.25 0.00 0.00 2.32
3413 8590 7.010552 CAGCTGTTAGACATGGTACTACATTTC 59.989 40.741 5.25 0.00 0.00 2.17
3414 8591 7.042335 GCTGTTAGACATGGTACTACATTTCT 58.958 38.462 0.00 6.19 40.12 2.52
3415 8592 7.549488 GCTGTTAGACATGGTACTACATTTCTT 59.451 37.037 6.22 0.00 38.46 2.52
3416 8593 8.997621 TGTTAGACATGGTACTACATTTCTTC 57.002 34.615 6.22 3.09 38.46 2.87
3417 8594 7.758076 TGTTAGACATGGTACTACATTTCTTCG 59.242 37.037 6.22 0.00 38.46 3.79
3418 8595 5.661458 AGACATGGTACTACATTTCTTCGG 58.339 41.667 0.00 0.00 35.05 4.30
3419 8596 4.766375 ACATGGTACTACATTTCTTCGGG 58.234 43.478 0.00 0.00 0.00 5.14
3420 8597 3.899052 TGGTACTACATTTCTTCGGGG 57.101 47.619 0.00 0.00 0.00 5.73
3421 8598 2.502538 TGGTACTACATTTCTTCGGGGG 59.497 50.000 0.00 0.00 0.00 5.40
3473 8794 1.384583 AGGACTCTCCTCCGCTTCA 59.615 57.895 0.00 0.00 45.66 3.02
3554 8875 3.723260 TGTCACTTGATTAAGCGTGTGA 58.277 40.909 12.46 12.46 37.43 3.58
3621 8942 7.524717 ACACTGCAAGGTATTAGAATGTTTT 57.475 32.000 0.00 0.00 39.30 2.43
3705 9026 6.293190 CGAGTTGCCATTACTGTAACAAAAGA 60.293 38.462 1.73 0.00 0.00 2.52
3803 9124 5.063312 GTCAGAAGCTGAGACTTTCTAATGC 59.937 44.000 0.00 0.00 41.46 3.56
3876 9647 8.380742 ACTTTCTAATAGTCAATCTTCTGGGA 57.619 34.615 0.00 0.00 0.00 4.37
3878 9649 9.844257 CTTTCTAATAGTCAATCTTCTGGGATT 57.156 33.333 0.00 0.00 36.49 3.01
3880 9651 7.220030 TCTAATAGTCAATCTTCTGGGATTGC 58.780 38.462 11.05 7.53 46.99 3.56
3881 9652 2.636830 AGTCAATCTTCTGGGATTGCG 58.363 47.619 11.05 0.00 46.99 4.85
3883 9654 3.118112 AGTCAATCTTCTGGGATTGCGAT 60.118 43.478 11.05 0.00 46.99 4.58
3884 9655 3.629398 GTCAATCTTCTGGGATTGCGATT 59.371 43.478 11.05 0.00 46.99 3.34
3885 9656 4.096984 GTCAATCTTCTGGGATTGCGATTT 59.903 41.667 11.05 0.00 46.99 2.17
3891 9662 6.411376 TCTTCTGGGATTGCGATTTTACTTA 58.589 36.000 0.00 0.00 0.00 2.24
3895 9666 7.535139 TCTGGGATTGCGATTTTACTTAAAAG 58.465 34.615 1.03 0.00 38.42 2.27
3896 9667 6.626302 TGGGATTGCGATTTTACTTAAAAGG 58.374 36.000 1.03 0.00 38.42 3.11
3897 9668 6.209788 TGGGATTGCGATTTTACTTAAAAGGT 59.790 34.615 1.03 0.00 38.42 3.50
3900 9671 7.810759 GGATTGCGATTTTACTTAAAAGGTTCA 59.189 33.333 1.03 0.00 38.42 3.18
3919 9690 8.499403 AGGTTCATAAACTAGATTTGCTCTTC 57.501 34.615 0.00 0.00 35.61 2.87
3920 9691 8.103305 AGGTTCATAAACTAGATTTGCTCTTCA 58.897 33.333 0.00 0.00 35.61 3.02
3921 9692 8.897752 GGTTCATAAACTAGATTTGCTCTTCAT 58.102 33.333 0.00 0.00 35.61 2.57
3934 9705 9.815936 GATTTGCTCTTCATTTTATTTTGTTGG 57.184 29.630 0.00 0.00 0.00 3.77
3935 9706 8.954950 TTTGCTCTTCATTTTATTTTGTTGGA 57.045 26.923 0.00 0.00 0.00 3.53
4261 10033 3.615496 GCATACTGCAAATGCTTTCCAAG 59.385 43.478 20.91 0.00 45.05 3.61
4295 10067 9.906660 TTAAGCAATACTGATTTTGGTTAACTG 57.093 29.630 13.10 0.00 44.42 3.16
4331 10103 5.233050 CAGATGATGATGTTACGTGTCCTTC 59.767 44.000 0.00 0.00 0.00 3.46
4332 10104 3.857052 TGATGATGTTACGTGTCCTTCC 58.143 45.455 0.00 0.00 0.00 3.46
4661 13377 0.883833 AACACTGTATGCCAGCTTGC 59.116 50.000 2.09 2.09 45.68 4.01
4700 13416 5.237344 AGTTTGTATTGAGCTGTCTGTGTTC 59.763 40.000 0.00 0.00 0.00 3.18
4836 13650 0.976641 ATTGTGGCTCCTCGAACTCA 59.023 50.000 0.00 0.00 0.00 3.41
4856 13670 2.994186 AAAAATGGAGATGGGCATGC 57.006 45.000 9.90 9.90 0.00 4.06
4868 13682 1.297689 GGCATGCAGTGGAGTCTGA 59.702 57.895 21.36 0.00 37.61 3.27
4927 13741 5.488262 AAATGTAAGCCATCAAAAAGCCT 57.512 34.783 0.00 0.00 31.75 4.58
4950 13764 7.202011 GCCTGATTAACCCAGTAGAGATCTAAA 60.202 40.741 0.00 0.00 0.00 1.85
4951 13765 8.364142 CCTGATTAACCCAGTAGAGATCTAAAG 58.636 40.741 0.00 0.00 0.00 1.85
4952 13766 8.840200 TGATTAACCCAGTAGAGATCTAAAGT 57.160 34.615 0.00 0.00 0.00 2.66
4953 13767 9.931698 TGATTAACCCAGTAGAGATCTAAAGTA 57.068 33.333 0.00 0.00 0.00 2.24
4955 13769 9.939424 ATTAACCCAGTAGAGATCTAAAGTACT 57.061 33.333 0.00 0.00 0.00 2.73
4956 13770 7.885009 AACCCAGTAGAGATCTAAAGTACTC 57.115 40.000 0.00 0.00 0.00 2.59
4957 13771 6.367161 ACCCAGTAGAGATCTAAAGTACTCC 58.633 44.000 0.00 0.00 0.00 3.85
4958 13772 5.771165 CCCAGTAGAGATCTAAAGTACTCCC 59.229 48.000 0.00 0.00 0.00 4.30
4959 13773 6.411086 CCCAGTAGAGATCTAAAGTACTCCCT 60.411 46.154 0.00 0.00 0.00 4.20
4960 13774 6.713450 CCAGTAGAGATCTAAAGTACTCCCTC 59.287 46.154 0.00 0.00 0.00 4.30
4961 13775 6.713450 CAGTAGAGATCTAAAGTACTCCCTCC 59.287 46.154 0.00 0.00 0.00 4.30
4962 13776 4.721132 AGAGATCTAAAGTACTCCCTCCG 58.279 47.826 0.00 0.00 0.00 4.63
4963 13777 4.166531 AGAGATCTAAAGTACTCCCTCCGT 59.833 45.833 0.00 0.00 0.00 4.69
4964 13778 4.463070 AGATCTAAAGTACTCCCTCCGTC 58.537 47.826 0.00 0.00 0.00 4.79
4965 13779 3.010200 TCTAAAGTACTCCCTCCGTCC 57.990 52.381 0.00 0.00 0.00 4.79
4966 13780 1.674962 CTAAAGTACTCCCTCCGTCCG 59.325 57.143 0.00 0.00 0.00 4.79
4967 13781 0.038744 AAAGTACTCCCTCCGTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
4968 13782 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
4969 13783 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
4970 13784 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
4971 13785 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
4993 13807 8.641499 AAAAACTTGTCGAAGAAATGCATAAA 57.359 26.923 0.00 0.00 39.69 1.40
4994 13808 8.641499 AAAACTTGTCGAAGAAATGCATAAAA 57.359 26.923 0.00 0.00 39.69 1.52
4995 13809 8.641499 AAACTTGTCGAAGAAATGCATAAAAA 57.359 26.923 0.00 0.00 39.69 1.94
4996 13810 8.816640 AACTTGTCGAAGAAATGCATAAAAAT 57.183 26.923 0.00 0.00 39.69 1.82
4997 13811 8.231304 ACTTGTCGAAGAAATGCATAAAAATG 57.769 30.769 0.00 0.00 39.69 2.32
4998 13812 7.329226 ACTTGTCGAAGAAATGCATAAAAATGG 59.671 33.333 0.00 0.00 39.69 3.16
4999 13813 6.918626 TGTCGAAGAAATGCATAAAAATGGA 58.081 32.000 0.00 0.00 39.69 3.41
5000 13814 7.546358 TGTCGAAGAAATGCATAAAAATGGAT 58.454 30.769 0.00 0.00 39.69 3.41
5001 13815 7.488792 TGTCGAAGAAATGCATAAAAATGGATG 59.511 33.333 0.00 0.00 39.69 3.51
5002 13816 7.489113 GTCGAAGAAATGCATAAAAATGGATGT 59.511 33.333 0.00 0.00 39.69 3.06
5003 13817 8.681806 TCGAAGAAATGCATAAAAATGGATGTA 58.318 29.630 0.00 0.00 32.82 2.29
5004 13818 9.467258 CGAAGAAATGCATAAAAATGGATGTAT 57.533 29.630 0.00 0.00 32.82 2.29
5012 13826 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
5045 13859 9.367160 TGTCTATATACATCCATTTCTCTGACA 57.633 33.333 0.00 0.00 0.00 3.58
5052 13866 9.911788 ATACATCCATTTCTCTGACAAGTATTT 57.088 29.630 0.00 0.00 0.00 1.40
5053 13867 8.273780 ACATCCATTTCTCTGACAAGTATTTC 57.726 34.615 0.00 0.00 0.00 2.17
5054 13868 7.337942 ACATCCATTTCTCTGACAAGTATTTCC 59.662 37.037 0.00 0.00 0.00 3.13
5055 13869 5.874810 TCCATTTCTCTGACAAGTATTTCCG 59.125 40.000 0.00 0.00 0.00 4.30
5056 13870 5.065218 CCATTTCTCTGACAAGTATTTCCGG 59.935 44.000 0.00 0.00 0.00 5.14
5057 13871 5.477607 TTTCTCTGACAAGTATTTCCGGA 57.522 39.130 0.00 0.00 0.00 5.14
5058 13872 4.451629 TCTCTGACAAGTATTTCCGGAC 57.548 45.455 1.83 0.00 0.00 4.79
5059 13873 3.119602 TCTCTGACAAGTATTTCCGGACG 60.120 47.826 1.83 0.00 0.00 4.79
5060 13874 2.094390 TCTGACAAGTATTTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
5061 13875 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5062 13876 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
5063 13877 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5064 13878 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5198 14012 3.256558 CTCGAAGCTCATGATGAACACA 58.743 45.455 0.00 0.00 0.00 3.72
5266 14081 3.359695 TGGCTGAAAGTTATACACCCC 57.640 47.619 0.00 0.00 35.30 4.95
5460 14275 8.798859 AGTATCAATTCACTTAAACTGCAGAT 57.201 30.769 23.35 5.41 0.00 2.90
5471 14286 8.015087 CACTTAAACTGCAGATCATTTACGAAA 58.985 33.333 23.35 0.93 0.00 3.46
5480 14295 6.513230 GCAGATCATTTACGAAATATGTGGCA 60.513 38.462 0.00 0.00 0.00 4.92
5486 14301 5.539582 TTACGAAATATGTGGCAGACAAC 57.460 39.130 0.00 0.00 38.36 3.32
5551 14366 2.770164 TCCTTGGAGTTAGCAAGAGC 57.230 50.000 0.00 0.00 42.56 4.09
5626 14441 1.130561 GCGCAAGTCTTGGAATGGTAC 59.869 52.381 14.40 0.00 41.68 3.34
5650 14465 7.605449 ACAATAAACTGGGATGAACATTTCAG 58.395 34.615 12.80 12.80 43.98 3.02
5664 14479 7.397221 TGAACATTTCAGAGTAGTCAATGGAT 58.603 34.615 11.66 3.26 34.08 3.41
5685 14500 0.732538 GGTGCGAATTTCAAAGGCCG 60.733 55.000 0.00 0.00 0.00 6.13
5692 14507 0.598065 ATTTCAAAGGCCGCAGTGTC 59.402 50.000 0.00 0.00 0.00 3.67
5729 14544 3.090210 TCCATGCAACTGGATGTGAAT 57.910 42.857 4.87 0.00 40.43 2.57
5735 14550 2.097142 GCAACTGGATGTGAATGAGCTC 59.903 50.000 6.82 6.82 0.00 4.09
5767 14582 7.403312 TCATTCAGAAGAACTTTTCCAACAA 57.597 32.000 0.00 0.00 36.39 2.83
5783 14598 3.058639 CCAACAAGACTGCTAAGCTTGTC 60.059 47.826 9.86 7.90 43.64 3.18
5808 14623 7.626084 TCTCAATTTACCCTCCCTACTTTGATA 59.374 37.037 0.00 0.00 0.00 2.15
5910 14725 3.685139 TGATGGAGTCCTTTGACAGAC 57.315 47.619 11.33 0.00 44.33 3.51
5954 14769 4.310769 AGAGAAAACATGACGGACTTCTG 58.689 43.478 0.00 0.00 0.00 3.02
5958 14773 0.898320 ACATGACGGACTTCTGGGAG 59.102 55.000 0.00 0.00 0.00 4.30
5969 14784 5.444176 GGACTTCTGGGAGATGAATTGAAT 58.556 41.667 0.00 0.00 0.00 2.57
5971 14786 7.056635 GGACTTCTGGGAGATGAATTGAATAA 58.943 38.462 0.00 0.00 0.00 1.40
6001 14816 2.894763 TGCATAAATCAGGCAATGGC 57.105 45.000 0.00 0.00 41.89 4.40
6116 14931 6.206634 AGACCAAATTTTCTGCATTTCGTCTA 59.793 34.615 7.84 0.00 39.12 2.59
6121 14936 9.430838 CAAATTTTCTGCATTTCGTCTATCTAG 57.569 33.333 0.00 0.00 0.00 2.43
6146 14961 8.007742 AGAGATTATCCAGTACATGTCCTTAGT 58.992 37.037 0.00 0.00 0.00 2.24
6149 14964 5.599999 ATCCAGTACATGTCCTTAGTCAC 57.400 43.478 0.00 0.00 0.00 3.67
6164 14979 5.050567 CCTTAGTCACAAGAACGTTACAACC 60.051 44.000 0.00 0.00 0.00 3.77
6185 15000 4.062991 CCGTAAGTTAGCCTGTTCTGTTT 58.937 43.478 0.00 0.00 0.00 2.83
6193 15008 3.891049 AGCCTGTTCTGTTTCTTTGAGT 58.109 40.909 0.00 0.00 0.00 3.41
6196 15011 5.885912 AGCCTGTTCTGTTTCTTTGAGTTTA 59.114 36.000 0.00 0.00 0.00 2.01
6198 15013 7.068716 AGCCTGTTCTGTTTCTTTGAGTTTAAT 59.931 33.333 0.00 0.00 0.00 1.40
6200 15015 8.405531 CCTGTTCTGTTTCTTTGAGTTTAATGA 58.594 33.333 0.00 0.00 0.00 2.57
6201 15016 9.443283 CTGTTCTGTTTCTTTGAGTTTAATGAG 57.557 33.333 0.00 0.00 0.00 2.90
6202 15017 7.915397 TGTTCTGTTTCTTTGAGTTTAATGAGC 59.085 33.333 0.00 0.00 0.00 4.26
6203 15018 7.807977 TCTGTTTCTTTGAGTTTAATGAGCT 57.192 32.000 0.00 0.00 0.00 4.09
6205 15020 9.337396 TCTGTTTCTTTGAGTTTAATGAGCTTA 57.663 29.630 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 5.269313 GTTTCTTCATCATTCTTGCGGATC 58.731 41.667 0.00 0.00 0.00 3.36
53 54 0.393537 CTCTGGTGCCCTCCATTGTC 60.394 60.000 0.00 0.00 36.84 3.18
55 56 0.107312 CTCTCTGGTGCCCTCCATTG 60.107 60.000 0.00 0.00 36.84 2.82
57 58 0.690411 CTCTCTCTGGTGCCCTCCAT 60.690 60.000 0.00 0.00 36.84 3.41
65 66 5.007034 TCTCTGTTCTTACTCTCTCTGGTG 58.993 45.833 0.00 0.00 0.00 4.17
66 67 5.249780 TCTCTGTTCTTACTCTCTCTGGT 57.750 43.478 0.00 0.00 0.00 4.00
70 71 3.380320 GCCCTCTCTGTTCTTACTCTCTC 59.620 52.174 0.00 0.00 0.00 3.20
94 95 2.365635 CATCTCTCCCCACCCCGT 60.366 66.667 0.00 0.00 0.00 5.28
96 97 1.768077 CTCCATCTCTCCCCACCCC 60.768 68.421 0.00 0.00 0.00 4.95
141 142 5.746065 GCAGTAGGGTTGAGGCACATATAAT 60.746 44.000 0.00 0.00 0.00 1.28
153 154 0.976641 CTGTCTGGCAGTAGGGTTGA 59.023 55.000 15.27 0.00 40.27 3.18
163 164 3.680786 CCGTCGGACTGTCTGGCA 61.681 66.667 20.17 0.00 0.00 4.92
177 178 2.233305 AAGATGTGAGACCCTACCGT 57.767 50.000 0.00 0.00 0.00 4.83
200 201 0.811616 CTACTGCCACAGGATTCGGC 60.812 60.000 0.00 0.00 46.43 5.54
204 205 0.912486 GACCCTACTGCCACAGGATT 59.088 55.000 0.00 0.00 35.51 3.01
210 211 2.184579 GCTCGACCCTACTGCCAC 59.815 66.667 0.00 0.00 0.00 5.01
214 215 3.111939 CTCCGCTCGACCCTACTG 58.888 66.667 0.00 0.00 0.00 2.74
235 236 0.324943 AGCCAACTAACAGCCGTCAT 59.675 50.000 0.00 0.00 0.00 3.06
236 237 0.602638 CAGCCAACTAACAGCCGTCA 60.603 55.000 0.00 0.00 0.00 4.35
238 239 1.966451 GCAGCCAACTAACAGCCGT 60.966 57.895 0.00 0.00 0.00 5.68
239 240 1.672356 AGCAGCCAACTAACAGCCG 60.672 57.895 0.00 0.00 0.00 5.52
241 242 0.519077 GTCAGCAGCCAACTAACAGC 59.481 55.000 0.00 0.00 0.00 4.40
243 244 0.105964 ACGTCAGCAGCCAACTAACA 59.894 50.000 0.00 0.00 0.00 2.41
283 284 1.597742 TAGGCTACCGCTAGTAACCG 58.402 55.000 0.00 0.00 41.39 4.44
288 289 1.633774 ATGCATAGGCTACCGCTAGT 58.366 50.000 16.22 3.32 41.91 2.57
379 382 7.291566 TGACCCTTTTCAGATAGTTTAACCAA 58.708 34.615 0.00 0.00 0.00 3.67
400 403 3.302156 CGGCAAATTTTCGTGTTTTGACC 60.302 43.478 0.00 0.00 35.40 4.02
433 436 5.545335 TGTGATAGGAGCACCTTATCATCAT 59.455 40.000 8.39 0.00 45.36 2.45
479 482 5.803461 CGTGGAGTCATTACTTCGTTCATAA 59.197 40.000 0.00 0.00 35.56 1.90
486 489 1.278238 GCCGTGGAGTCATTACTTCG 58.722 55.000 0.00 0.00 35.56 3.79
549 553 3.517100 CCCCTCTCTCTCTCAACATCAAA 59.483 47.826 0.00 0.00 0.00 2.69
659 667 1.303155 AGAGCTGGCAGCCTTTGAC 60.303 57.895 34.33 18.36 43.77 3.18
950 1315 2.125912 CGACGGAGGGAAGCAGTG 60.126 66.667 0.00 0.00 0.00 3.66
1353 1724 0.464036 GGTGCATGATGTACTCGGGA 59.536 55.000 13.19 0.00 33.35 5.14
1482 1853 2.938798 ACCCATTCCCCGGCTTCA 60.939 61.111 0.00 0.00 0.00 3.02
1674 2051 1.306997 TCCCCAAGCTTCCCTCGAT 60.307 57.895 0.00 0.00 0.00 3.59
1677 2054 0.542333 GTAGTCCCCAAGCTTCCCTC 59.458 60.000 0.00 0.00 0.00 4.30
1695 2072 1.080705 GCAGCGGTACTTGTCGAGT 60.081 57.895 0.00 0.00 42.55 4.18
1746 2123 1.985334 TACGGTTGCTGTACATGTCG 58.015 50.000 0.00 0.00 0.00 4.35
2094 7268 6.422701 CGGCAGAATTACGATTATTACCTGAA 59.577 38.462 0.00 0.00 0.00 3.02
2104 7278 3.181493 ACGTAGACGGCAGAATTACGATT 60.181 43.478 13.25 0.00 44.95 3.34
2105 7279 2.357009 ACGTAGACGGCAGAATTACGAT 59.643 45.455 13.25 0.00 44.95 3.73
2107 7281 2.184385 ACGTAGACGGCAGAATTACG 57.816 50.000 7.04 5.56 44.95 3.18
2108 7282 3.767278 AGAACGTAGACGGCAGAATTAC 58.233 45.455 7.04 0.00 44.95 1.89
2110 7284 3.314541 AAGAACGTAGACGGCAGAATT 57.685 42.857 7.04 0.00 44.95 2.17
2111 7285 2.993899 CAAAGAACGTAGACGGCAGAAT 59.006 45.455 7.04 0.00 44.95 2.40
2112 7286 2.034939 TCAAAGAACGTAGACGGCAGAA 59.965 45.455 7.04 0.00 44.95 3.02
2155 7329 3.259374 ACACACCAAACACAACATTTCCA 59.741 39.130 0.00 0.00 0.00 3.53
2212 7386 4.699637 TGTTAGAAAATCAGACACCACGT 58.300 39.130 0.00 0.00 0.00 4.49
2265 7439 0.250513 ATCCTGGAAGTTGGACGCTC 59.749 55.000 0.00 0.00 34.90 5.03
2318 7492 4.580580 CACTTATCAAACATAAGCCCTCCC 59.419 45.833 1.95 0.00 35.57 4.30
2364 7538 7.409465 AACTCGAAGTGCTTTACTCTAAAAG 57.591 36.000 0.00 0.00 39.18 2.27
2396 7570 3.157881 CTCTCCACACAAGACCACTAGA 58.842 50.000 0.00 0.00 0.00 2.43
2601 7775 7.756272 AGAACATCGTATACGTATTTGTGAACA 59.244 33.333 23.67 1.38 40.80 3.18
2664 7838 2.545526 ACTGAAATGAGTGAACACGCTG 59.454 45.455 9.68 0.00 36.20 5.18
2677 7851 3.549423 CGGCTTGCATATGGACTGAAATG 60.549 47.826 4.56 0.00 0.00 2.32
2689 7863 7.148255 GGATATTTCATCAATACGGCTTGCATA 60.148 37.037 0.00 0.00 29.65 3.14
2900 8074 5.428496 ACAATTCTGTCGATGGCATATTG 57.572 39.130 12.86 12.86 0.00 1.90
2901 8075 5.589855 TCAACAATTCTGTCGATGGCATATT 59.410 36.000 0.00 0.00 33.45 1.28
2951 8126 2.423538 GGCAATAGCAACCGTTGATTCT 59.576 45.455 15.63 5.40 44.61 2.40
2962 8137 2.292126 TGGAATCCTTGGGCAATAGCAA 60.292 45.455 0.00 0.00 44.61 3.91
3049 8225 8.062065 TCTAACACCAGGCAATTAATTTTAGG 57.938 34.615 0.00 1.53 0.00 2.69
3099 8275 8.130671 ACAGCTTGTACTGGTATCTAAGTTAA 57.869 34.615 0.00 0.00 42.21 2.01
3203 8380 4.850386 ACTCCCTAGGAACCACAATAAACT 59.150 41.667 11.48 0.00 0.00 2.66
3268 8445 6.312426 CAGAGAACGATGCTATTCAAGAAGTT 59.688 38.462 0.00 0.00 0.00 2.66
3273 8450 6.754209 AGTAACAGAGAACGATGCTATTCAAG 59.246 38.462 0.00 0.00 0.00 3.02
3340 8517 3.640967 AGCCCATTGCAAGTCTAAAAACA 59.359 39.130 4.94 0.00 44.83 2.83
3341 8518 3.989817 CAGCCCATTGCAAGTCTAAAAAC 59.010 43.478 4.94 0.00 44.83 2.43
3342 8519 3.894427 TCAGCCCATTGCAAGTCTAAAAA 59.106 39.130 4.94 0.00 44.83 1.94
3343 8520 3.495331 TCAGCCCATTGCAAGTCTAAAA 58.505 40.909 4.94 0.00 44.83 1.52
3344 8521 3.084039 CTCAGCCCATTGCAAGTCTAAA 58.916 45.455 4.94 0.00 44.83 1.85
3345 8522 2.305635 TCTCAGCCCATTGCAAGTCTAA 59.694 45.455 4.94 0.00 44.83 2.10
3346 8523 1.908619 TCTCAGCCCATTGCAAGTCTA 59.091 47.619 4.94 0.00 44.83 2.59
3347 8524 0.694771 TCTCAGCCCATTGCAAGTCT 59.305 50.000 4.94 0.00 44.83 3.24
3348 8525 1.538047 TTCTCAGCCCATTGCAAGTC 58.462 50.000 4.94 0.00 44.83 3.01
3349 8526 1.891150 CTTTCTCAGCCCATTGCAAGT 59.109 47.619 4.94 0.00 44.83 3.16
3350 8527 1.891150 ACTTTCTCAGCCCATTGCAAG 59.109 47.619 4.94 0.00 44.83 4.01
3351 8528 1.999648 ACTTTCTCAGCCCATTGCAA 58.000 45.000 0.00 0.00 44.83 4.08
3352 8529 2.618816 CCTACTTTCTCAGCCCATTGCA 60.619 50.000 0.00 0.00 44.83 4.08
3353 8530 2.019984 CCTACTTTCTCAGCCCATTGC 58.980 52.381 0.00 0.00 41.71 3.56
3354 8531 3.634397 TCCTACTTTCTCAGCCCATTG 57.366 47.619 0.00 0.00 0.00 2.82
3355 8532 7.821134 ATATATCCTACTTTCTCAGCCCATT 57.179 36.000 0.00 0.00 0.00 3.16
3356 8533 8.125733 ACTATATATCCTACTTTCTCAGCCCAT 58.874 37.037 0.00 0.00 0.00 4.00
3357 8534 7.397476 CACTATATATCCTACTTTCTCAGCCCA 59.603 40.741 0.00 0.00 0.00 5.36
3358 8535 7.616150 TCACTATATATCCTACTTTCTCAGCCC 59.384 40.741 0.00 0.00 0.00 5.19
3359 8536 8.582657 TCACTATATATCCTACTTTCTCAGCC 57.417 38.462 0.00 0.00 0.00 4.85
3367 8544 9.540538 ACAGCTGATTCACTATATATCCTACTT 57.459 33.333 23.35 0.00 0.00 2.24
3368 8545 9.540538 AACAGCTGATTCACTATATATCCTACT 57.459 33.333 23.35 0.00 0.00 2.57
3371 8548 9.760926 TCTAACAGCTGATTCACTATATATCCT 57.239 33.333 23.35 0.00 0.00 3.24
3372 8549 9.796120 GTCTAACAGCTGATTCACTATATATCC 57.204 37.037 23.35 0.00 0.00 2.59
3376 8553 8.093307 CCATGTCTAACAGCTGATTCACTATAT 58.907 37.037 23.35 0.72 0.00 0.86
3377 8554 7.069950 ACCATGTCTAACAGCTGATTCACTATA 59.930 37.037 23.35 0.00 0.00 1.31
3378 8555 6.126940 ACCATGTCTAACAGCTGATTCACTAT 60.127 38.462 23.35 3.56 0.00 2.12
3379 8556 5.187772 ACCATGTCTAACAGCTGATTCACTA 59.812 40.000 23.35 1.07 0.00 2.74
3380 8557 4.019860 ACCATGTCTAACAGCTGATTCACT 60.020 41.667 23.35 0.00 0.00 3.41
3381 8558 4.256920 ACCATGTCTAACAGCTGATTCAC 58.743 43.478 23.35 11.79 0.00 3.18
3382 8559 4.558226 ACCATGTCTAACAGCTGATTCA 57.442 40.909 23.35 11.89 0.00 2.57
3383 8560 5.665459 AGTACCATGTCTAACAGCTGATTC 58.335 41.667 23.35 6.47 0.00 2.52
3384 8561 5.683876 AGTACCATGTCTAACAGCTGATT 57.316 39.130 23.35 13.35 0.00 2.57
3385 8562 5.656859 TGTAGTACCATGTCTAACAGCTGAT 59.343 40.000 23.35 12.06 0.00 2.90
3386 8563 5.014202 TGTAGTACCATGTCTAACAGCTGA 58.986 41.667 23.35 0.00 0.00 4.26
3387 8564 5.324784 TGTAGTACCATGTCTAACAGCTG 57.675 43.478 13.48 13.48 0.00 4.24
3388 8565 6.546428 AATGTAGTACCATGTCTAACAGCT 57.454 37.500 0.00 0.00 0.00 4.24
3389 8566 7.042335 AGAAATGTAGTACCATGTCTAACAGC 58.958 38.462 3.65 0.00 37.59 4.40
3390 8567 9.088512 GAAGAAATGTAGTACCATGTCTAACAG 57.911 37.037 5.52 0.00 38.25 3.16
3391 8568 7.758076 CGAAGAAATGTAGTACCATGTCTAACA 59.242 37.037 5.52 0.00 38.25 2.41
3392 8569 7.222224 CCGAAGAAATGTAGTACCATGTCTAAC 59.778 40.741 5.52 3.70 38.25 2.34
3393 8570 7.262772 CCGAAGAAATGTAGTACCATGTCTAA 58.737 38.462 5.52 0.00 38.25 2.10
3394 8571 6.183360 CCCGAAGAAATGTAGTACCATGTCTA 60.183 42.308 5.52 0.00 38.25 2.59
3395 8572 5.395324 CCCGAAGAAATGTAGTACCATGTCT 60.395 44.000 0.00 0.30 40.42 3.41
3396 8573 4.809426 CCCGAAGAAATGTAGTACCATGTC 59.191 45.833 0.00 0.00 30.44 3.06
3397 8574 4.383770 CCCCGAAGAAATGTAGTACCATGT 60.384 45.833 0.00 0.00 0.00 3.21
3398 8575 4.127171 CCCCGAAGAAATGTAGTACCATG 58.873 47.826 0.00 0.00 0.00 3.66
3399 8576 3.135895 CCCCCGAAGAAATGTAGTACCAT 59.864 47.826 0.00 0.00 0.00 3.55
3400 8577 2.502538 CCCCCGAAGAAATGTAGTACCA 59.497 50.000 0.00 0.00 0.00 3.25
3401 8578 3.189618 CCCCCGAAGAAATGTAGTACC 57.810 52.381 0.00 0.00 0.00 3.34
3418 8595 2.568956 AGTACTCCGTACTTTTTCCCCC 59.431 50.000 1.03 0.00 45.68 5.40
3419 8596 3.969287 AGTACTCCGTACTTTTTCCCC 57.031 47.619 1.03 0.00 45.68 4.81
3420 8597 5.391312 TGTAGTACTCCGTACTTTTTCCC 57.609 43.478 11.44 0.00 45.68 3.97
3421 8598 6.861144 AGATGTAGTACTCCGTACTTTTTCC 58.139 40.000 11.44 0.49 45.68 3.13
3422 8599 9.448294 CATAGATGTAGTACTCCGTACTTTTTC 57.552 37.037 11.44 6.82 45.68 2.29
3423 8600 8.964772 ACATAGATGTAGTACTCCGTACTTTTT 58.035 33.333 11.44 0.00 46.63 1.94
3424 8601 8.517062 ACATAGATGTAGTACTCCGTACTTTT 57.483 34.615 11.44 0.00 46.63 2.27
3425 8602 8.517062 AACATAGATGTAGTACTCCGTACTTT 57.483 34.615 11.44 0.00 46.63 2.66
3426 8603 9.050601 GTAACATAGATGTAGTACTCCGTACTT 57.949 37.037 11.44 0.00 46.63 2.24
3428 8605 8.600449 AGTAACATAGATGTAGTACTCCGTAC 57.400 38.462 0.00 0.00 40.80 3.67
3430 8607 9.270640 CTTAGTAACATAGATGTAGTACTCCGT 57.729 37.037 0.00 0.00 40.80 4.69
3431 8608 8.719648 CCTTAGTAACATAGATGTAGTACTCCG 58.280 40.741 0.00 4.36 40.80 4.63
3432 8609 9.790344 TCCTTAGTAACATAGATGTAGTACTCC 57.210 37.037 0.00 0.00 40.80 3.85
3437 8614 9.563748 GAGAGTCCTTAGTAACATAGATGTAGT 57.436 37.037 0.00 0.00 40.80 2.73
3438 8615 9.005777 GGAGAGTCCTTAGTAACATAGATGTAG 57.994 40.741 0.00 0.00 35.00 2.74
3439 8616 8.725256 AGGAGAGTCCTTAGTAACATAGATGTA 58.275 37.037 0.00 0.00 46.91 2.29
3440 8617 7.588169 AGGAGAGTCCTTAGTAACATAGATGT 58.412 38.462 0.00 0.00 46.91 3.06
3554 8875 5.880887 GGAAAGATAACGGATTTCAGGAAGT 59.119 40.000 0.00 0.00 35.18 3.01
3803 9124 5.703130 AGAAGGAAATTCGTCAAAGAAGAGG 59.297 40.000 0.00 0.00 43.16 3.69
3891 9662 9.301897 AGAGCAAATCTAGTTTATGAACCTTTT 57.698 29.630 0.00 0.00 36.10 2.27
3895 9666 8.268850 TGAAGAGCAAATCTAGTTTATGAACC 57.731 34.615 0.00 0.00 37.23 3.62
3908 9679 9.815936 CCAACAAAATAAAATGAAGAGCAAATC 57.184 29.630 0.00 0.00 0.00 2.17
3909 9680 9.558396 TCCAACAAAATAAAATGAAGAGCAAAT 57.442 25.926 0.00 0.00 0.00 2.32
3912 9683 7.867403 GTCTCCAACAAAATAAAATGAAGAGCA 59.133 33.333 0.00 0.00 0.00 4.26
3913 9684 8.084684 AGTCTCCAACAAAATAAAATGAAGAGC 58.915 33.333 0.00 0.00 0.00 4.09
3914 9685 9.617975 GAGTCTCCAACAAAATAAAATGAAGAG 57.382 33.333 0.00 0.00 0.00 2.85
3916 9687 9.971922 AAGAGTCTCCAACAAAATAAAATGAAG 57.028 29.630 0.00 0.00 0.00 3.02
3919 9690 9.971922 AAGAAGAGTCTCCAACAAAATAAAATG 57.028 29.630 0.00 0.00 30.70 2.32
3923 9694 9.408648 AGAAAAGAAGAGTCTCCAACAAAATAA 57.591 29.630 0.00 0.00 30.70 1.40
3926 9697 6.884295 TCAGAAAAGAAGAGTCTCCAACAAAA 59.116 34.615 0.00 0.00 30.70 2.44
3927 9698 6.414732 TCAGAAAAGAAGAGTCTCCAACAAA 58.585 36.000 0.00 0.00 30.70 2.83
3928 9699 5.989477 TCAGAAAAGAAGAGTCTCCAACAA 58.011 37.500 0.00 0.00 30.70 2.83
3930 9701 6.052360 ACTTCAGAAAAGAAGAGTCTCCAAC 58.948 40.000 10.37 0.00 46.18 3.77
3931 9702 6.240549 ACTTCAGAAAAGAAGAGTCTCCAA 57.759 37.500 10.37 0.00 46.18 3.53
3932 9703 5.878406 ACTTCAGAAAAGAAGAGTCTCCA 57.122 39.130 10.37 0.00 46.18 3.86
3933 9704 6.203915 GGAAACTTCAGAAAAGAAGAGTCTCC 59.796 42.308 10.37 6.56 46.18 3.71
3934 9705 6.989759 AGGAAACTTCAGAAAAGAAGAGTCTC 59.010 38.462 10.37 0.00 46.18 3.36
3935 9706 6.894682 AGGAAACTTCAGAAAAGAAGAGTCT 58.105 36.000 10.37 0.00 46.18 3.24
4031 9803 8.783660 AAGTACTCTACATCATTCCTCCATTA 57.216 34.615 0.00 0.00 0.00 1.90
4155 9927 9.073475 ACTAGGCTACTCATTCTACTATTTCAG 57.927 37.037 0.00 0.00 0.00 3.02
4295 10067 8.807667 AACATCATCATCTGTTGAAAAGAAAC 57.192 30.769 0.00 0.00 38.03 2.78
4331 10103 1.153628 GGGACACGAGACGATTGGG 60.154 63.158 0.00 0.00 0.00 4.12
4332 10104 1.153628 GGGGACACGAGACGATTGG 60.154 63.158 0.00 0.00 0.00 3.16
4542 13248 7.015226 TGAGTTGCCGTGAATTAATTGATAG 57.985 36.000 5.17 0.00 0.00 2.08
4634 13341 3.420839 GGCATACAGTGTTAATGGCAC 57.579 47.619 21.55 2.01 43.53 5.01
4700 13416 6.957984 AGATATACGCATGCAGTTCAATAG 57.042 37.500 19.57 0.00 0.00 1.73
4856 13670 2.093764 GTCCCTGAATCAGACTCCACTG 60.094 54.545 12.53 0.00 39.02 3.66
4917 13731 4.479158 ACTGGGTTAATCAGGCTTTTTGA 58.521 39.130 11.69 0.00 36.62 2.69
4927 13741 8.840200 ACTTTAGATCTCTACTGGGTTAATCA 57.160 34.615 0.00 0.00 0.00 2.57
4950 13764 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
4951 13765 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
4952 13766 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
4953 13767 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
4968 13782 8.641499 TTTATGCATTTCTTCGACAAGTTTTT 57.359 26.923 3.54 0.00 0.00 1.94
4969 13783 8.641499 TTTTATGCATTTCTTCGACAAGTTTT 57.359 26.923 3.54 0.00 0.00 2.43
4970 13784 8.641499 TTTTTATGCATTTCTTCGACAAGTTT 57.359 26.923 3.54 0.00 0.00 2.66
4971 13785 8.702438 CATTTTTATGCATTTCTTCGACAAGTT 58.298 29.630 3.54 0.00 0.00 2.66
4972 13786 7.329226 CCATTTTTATGCATTTCTTCGACAAGT 59.671 33.333 3.54 0.00 0.00 3.16
4973 13787 7.541783 TCCATTTTTATGCATTTCTTCGACAAG 59.458 33.333 3.54 0.00 0.00 3.16
4974 13788 7.374272 TCCATTTTTATGCATTTCTTCGACAA 58.626 30.769 3.54 0.00 0.00 3.18
4975 13789 6.918626 TCCATTTTTATGCATTTCTTCGACA 58.081 32.000 3.54 0.00 0.00 4.35
4976 13790 7.489113 ACATCCATTTTTATGCATTTCTTCGAC 59.511 33.333 3.54 0.00 0.00 4.20
4977 13791 7.546358 ACATCCATTTTTATGCATTTCTTCGA 58.454 30.769 3.54 0.00 0.00 3.71
4978 13792 7.760131 ACATCCATTTTTATGCATTTCTTCG 57.240 32.000 3.54 0.00 0.00 3.79
4986 13800 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
5019 13833 9.367160 TGTCAGAGAAATGGATGTATATAGACA 57.633 33.333 2.07 2.07 0.00 3.41
5026 13840 9.911788 AAATACTTGTCAGAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
5027 13841 9.383519 GAAATACTTGTCAGAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
5028 13842 7.337942 GGAAATACTTGTCAGAGAAATGGATGT 59.662 37.037 0.00 0.00 0.00 3.06
5029 13843 7.466455 CGGAAATACTTGTCAGAGAAATGGATG 60.466 40.741 0.00 0.00 0.00 3.51
5030 13844 6.540189 CGGAAATACTTGTCAGAGAAATGGAT 59.460 38.462 0.00 0.00 0.00 3.41
5031 13845 5.874810 CGGAAATACTTGTCAGAGAAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
5032 13846 5.065218 CCGGAAATACTTGTCAGAGAAATGG 59.935 44.000 0.00 0.00 0.00 3.16
5033 13847 5.874810 TCCGGAAATACTTGTCAGAGAAATG 59.125 40.000 0.00 0.00 0.00 2.32
5034 13848 5.875359 GTCCGGAAATACTTGTCAGAGAAAT 59.125 40.000 5.23 0.00 0.00 2.17
5035 13849 5.235516 GTCCGGAAATACTTGTCAGAGAAA 58.764 41.667 5.23 0.00 0.00 2.52
5036 13850 4.617530 CGTCCGGAAATACTTGTCAGAGAA 60.618 45.833 5.23 0.00 0.00 2.87
5037 13851 3.119602 CGTCCGGAAATACTTGTCAGAGA 60.120 47.826 5.23 0.00 0.00 3.10
5038 13852 3.179830 CGTCCGGAAATACTTGTCAGAG 58.820 50.000 5.23 0.00 0.00 3.35
5039 13853 2.094390 CCGTCCGGAAATACTTGTCAGA 60.094 50.000 5.23 0.00 37.50 3.27
5040 13854 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
5041 13855 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5042 13856 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5043 13857 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5044 13858 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5045 13859 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5046 13860 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5047 13861 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5048 13862 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5049 13863 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5050 13864 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
5051 13865 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
5052 13866 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
5053 13867 1.041447 AACATACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
5054 13868 0.822164 AAACATACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
5055 13869 3.345508 AAAAACATACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
5095 13909 4.506654 GCAGGATGTCATCATGATTTTTGC 59.493 41.667 27.21 9.34 43.29 3.68
5198 14012 9.503399 AAATAATTCCTTGTTCTAGTTCGAAGT 57.497 29.630 10.90 10.90 0.00 3.01
5234 14048 6.759497 AACTTTCAGCCATACCAGAAATAC 57.241 37.500 0.00 0.00 30.51 1.89
5238 14052 6.821665 GTGTATAACTTTCAGCCATACCAGAA 59.178 38.462 0.00 0.00 0.00 3.02
5266 14081 6.805760 CACCATAAGATCTCAGTGTATGATCG 59.194 42.308 11.38 0.88 40.84 3.69
5367 14182 8.885722 AGCAATGCCAAAATGATAAACTAAATG 58.114 29.630 0.00 0.00 0.00 2.32
5378 14193 4.039004 AGTGTAACAGCAATGCCAAAATGA 59.961 37.500 0.00 0.00 41.43 2.57
5439 14254 7.692460 ATGATCTGCAGTTTAAGTGAATTGA 57.308 32.000 14.67 0.00 0.00 2.57
5460 14275 5.877564 TGTCTGCCACATATTTCGTAAATGA 59.122 36.000 0.00 0.00 32.38 2.57
5471 14286 8.121305 TCTTATTTTTGTTGTCTGCCACATAT 57.879 30.769 0.00 0.00 33.90 1.78
5480 14295 8.641541 ACAACCATCATCTTATTTTTGTTGTCT 58.358 29.630 0.00 0.00 39.44 3.41
5486 14301 7.377398 TCACCACAACCATCATCTTATTTTTG 58.623 34.615 0.00 0.00 0.00 2.44
5551 14366 6.436843 AAGATCTAATAAACAAGCAACCCG 57.563 37.500 0.00 0.00 0.00 5.28
5619 14434 6.951198 TGTTCATCCCAGTTTATTGTACCATT 59.049 34.615 0.00 0.00 0.00 3.16
5626 14441 7.829725 TCTGAAATGTTCATCCCAGTTTATTG 58.170 34.615 11.26 0.00 39.30 1.90
5650 14465 2.609459 CGCACCAATCCATTGACTACTC 59.391 50.000 0.56 0.00 40.14 2.59
5664 14479 1.270041 GGCCTTTGAAATTCGCACCAA 60.270 47.619 0.00 0.00 0.00 3.67
5685 14500 3.440522 GGACCTTCCAAATTAGACACTGC 59.559 47.826 0.00 0.00 36.28 4.40
5729 14544 5.672421 TCTGAATGAAGAGAATGAGCTCA 57.328 39.130 20.79 20.79 37.37 4.26
5747 14562 6.094048 CAGTCTTGTTGGAAAAGTTCTTCTGA 59.906 38.462 0.00 0.00 0.00 3.27
5748 14563 6.261118 CAGTCTTGTTGGAAAAGTTCTTCTG 58.739 40.000 0.00 0.00 0.00 3.02
5756 14571 4.276926 AGCTTAGCAGTCTTGTTGGAAAAG 59.723 41.667 7.07 0.00 0.00 2.27
5767 14582 4.550076 ATTGAGACAAGCTTAGCAGTCT 57.450 40.909 24.79 24.79 44.40 3.24
5783 14598 6.062258 TCAAAGTAGGGAGGGTAAATTGAG 57.938 41.667 0.00 0.00 0.00 3.02
5945 14760 3.118629 TCAATTCATCTCCCAGAAGTCCG 60.119 47.826 0.00 0.00 0.00 4.79
5954 14769 6.603201 TGTTCCACTTATTCAATTCATCTCCC 59.397 38.462 0.00 0.00 0.00 4.30
5958 14773 7.221452 GCATGTGTTCCACTTATTCAATTCATC 59.779 37.037 0.00 0.00 35.11 2.92
5969 14784 6.095300 CCTGATTTATGCATGTGTTCCACTTA 59.905 38.462 10.16 0.00 35.11 2.24
5971 14786 4.400251 CCTGATTTATGCATGTGTTCCACT 59.600 41.667 10.16 0.00 35.11 4.00
6001 14816 4.971939 ACTTGTTTCAAATTCATTGGGGG 58.028 39.130 0.00 0.00 39.62 5.40
6007 14822 9.492973 CCTTATCCAAACTTGTTTCAAATTCAT 57.507 29.630 0.00 0.00 0.00 2.57
6116 14931 8.397957 AGGACATGTACTGGATAATCTCTAGAT 58.602 37.037 10.64 0.00 36.06 1.98
6121 14936 8.184304 ACTAAGGACATGTACTGGATAATCTC 57.816 38.462 12.48 0.00 0.00 2.75
6146 14961 2.891112 ACGGTTGTAACGTTCTTGTGA 58.109 42.857 2.82 0.00 42.70 3.58
6149 14964 5.393902 AACTTACGGTTGTAACGTTCTTG 57.606 39.130 2.82 0.00 42.70 3.02
6164 14979 4.989168 AGAAACAGAACAGGCTAACTTACG 59.011 41.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.