Multiple sequence alignment - TraesCS3B01G191800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G191800 | chr3B | 100.000 | 2409 | 0 | 0 | 1 | 2409 | 204847813 | 204850221 | 0.000000e+00 | 4449.0 |
1 | TraesCS3B01G191800 | chr3B | 87.558 | 434 | 50 | 2 | 1 | 433 | 203346212 | 203345782 | 1.290000e-137 | 499.0 |
2 | TraesCS3B01G191800 | chr3B | 87.558 | 434 | 50 | 3 | 1 | 433 | 221912945 | 221912515 | 1.290000e-137 | 499.0 |
3 | TraesCS3B01G191800 | chr3B | 87.327 | 434 | 51 | 4 | 1 | 433 | 215105265 | 215104835 | 5.980000e-136 | 494.0 |
4 | TraesCS3B01G191800 | chr3B | 92.308 | 78 | 6 | 0 | 1740 | 1817 | 204849473 | 204849550 | 7.040000e-21 | 111.0 |
5 | TraesCS3B01G191800 | chr3B | 92.308 | 78 | 6 | 0 | 1661 | 1738 | 204849552 | 204849629 | 7.040000e-21 | 111.0 |
6 | TraesCS3B01G191800 | chr3B | 95.238 | 42 | 2 | 0 | 1625 | 1666 | 798603566 | 798603525 | 1.550000e-07 | 67.6 |
7 | TraesCS3B01G191800 | chr3D | 89.314 | 1647 | 98 | 31 | 1 | 1619 | 142997700 | 142999296 | 0.000000e+00 | 1995.0 |
8 | TraesCS3B01G191800 | chr3D | 87.879 | 594 | 60 | 7 | 1741 | 2330 | 142999302 | 142999887 | 0.000000e+00 | 688.0 |
9 | TraesCS3B01G191800 | chr3D | 87.558 | 434 | 50 | 2 | 1 | 433 | 141411075 | 141410645 | 1.290000e-137 | 499.0 |
10 | TraesCS3B01G191800 | chr3D | 87.356 | 435 | 51 | 3 | 1 | 434 | 149205549 | 149205118 | 1.660000e-136 | 496.0 |
11 | TraesCS3B01G191800 | chr3D | 87.126 | 435 | 52 | 3 | 1 | 434 | 147335553 | 147335984 | 7.740000e-135 | 490.0 |
12 | TraesCS3B01G191800 | chr3D | 88.312 | 77 | 3 | 1 | 1662 | 1738 | 142999302 | 142999372 | 1.190000e-13 | 87.9 |
13 | TraesCS3B01G191800 | chr3D | 97.500 | 40 | 1 | 0 | 1629 | 1668 | 537315310 | 537315271 | 4.300000e-08 | 69.4 |
14 | TraesCS3B01G191800 | chr3D | 83.607 | 61 | 8 | 2 | 2159 | 2217 | 519343268 | 519343208 | 3.350000e-04 | 56.5 |
15 | TraesCS3B01G191800 | chr3A | 89.274 | 1501 | 87 | 28 | 1 | 1461 | 162751682 | 162753148 | 0.000000e+00 | 1812.0 |
16 | TraesCS3B01G191800 | chr3A | 88.018 | 434 | 48 | 2 | 1 | 433 | 159832474 | 159832044 | 5.940000e-141 | 510.0 |
17 | TraesCS3B01G191800 | chr3A | 84.483 | 522 | 63 | 8 | 1824 | 2330 | 162753578 | 162754096 | 1.290000e-137 | 499.0 |
18 | TraesCS3B01G191800 | chr3A | 87.558 | 434 | 50 | 3 | 1 | 433 | 166923907 | 166923477 | 1.290000e-137 | 499.0 |
19 | TraesCS3B01G191800 | chr3A | 90.968 | 155 | 6 | 5 | 1467 | 1619 | 162753270 | 162753418 | 4.060000e-48 | 202.0 |
20 | TraesCS3B01G191800 | chr3A | 91.837 | 49 | 4 | 0 | 1630 | 1678 | 722232515 | 722232563 | 4.300000e-08 | 69.4 |
21 | TraesCS3B01G191800 | chr3A | 95.238 | 42 | 2 | 0 | 1625 | 1666 | 41003396 | 41003437 | 1.550000e-07 | 67.6 |
22 | TraesCS3B01G191800 | chr6D | 81.600 | 125 | 17 | 5 | 2117 | 2238 | 367086063 | 367085942 | 5.480000e-17 | 99.0 |
23 | TraesCS3B01G191800 | chr6A | 95.349 | 43 | 2 | 0 | 1625 | 1667 | 540836390 | 540836348 | 4.300000e-08 | 69.4 |
24 | TraesCS3B01G191800 | chr7B | 95.238 | 42 | 2 | 0 | 1625 | 1666 | 57611045 | 57611086 | 1.550000e-07 | 67.6 |
25 | TraesCS3B01G191800 | chr5B | 95.238 | 42 | 2 | 0 | 1625 | 1666 | 45195138 | 45195097 | 1.550000e-07 | 67.6 |
26 | TraesCS3B01G191800 | chr2A | 93.478 | 46 | 2 | 1 | 1629 | 1674 | 469811436 | 469811480 | 1.550000e-07 | 67.6 |
27 | TraesCS3B01G191800 | chr5A | 93.182 | 44 | 1 | 1 | 1629 | 1672 | 481940725 | 481940684 | 2.000000e-06 | 63.9 |
28 | TraesCS3B01G191800 | chr7A | 82.812 | 64 | 9 | 2 | 2185 | 2247 | 663175737 | 663175675 | 3.350000e-04 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G191800 | chr3B | 204847813 | 204850221 | 2408 | False | 1557.000000 | 4449 | 94.872000 | 1 | 2409 | 3 | chr3B.!!$F1 | 2408 |
1 | TraesCS3B01G191800 | chr3D | 142997700 | 142999887 | 2187 | False | 923.633333 | 1995 | 88.501667 | 1 | 2330 | 3 | chr3D.!!$F2 | 2329 |
2 | TraesCS3B01G191800 | chr3A | 162751682 | 162754096 | 2414 | False | 837.666667 | 1812 | 88.241667 | 1 | 2330 | 3 | chr3A.!!$F3 | 2329 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
919 | 956 | 0.040692 | GGTTTCGGTTTCGGACTTGC | 60.041 | 55.0 | 0.0 | 0.0 | 36.95 | 4.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2338 | 2622 | 0.036306 | CCACCTTTCTACCACGCCTT | 59.964 | 55.0 | 0.0 | 0.0 | 0.0 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
69 | 72 | 1.429463 | CTTAAGCGGCACTCGAACTT | 58.571 | 50.000 | 1.45 | 0.00 | 42.43 | 2.66 |
100 | 103 | 1.649271 | GGCAATCCCAGTCTCCCCAT | 61.649 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
109 | 112 | 1.134788 | CAGTCTCCCCATGTAACGACC | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
224 | 228 | 3.432588 | CGTCGACGTCCTCCTGCT | 61.433 | 66.667 | 29.08 | 0.00 | 34.11 | 4.24 |
262 | 266 | 1.227943 | GCAGAACTGGGTCAGCACA | 60.228 | 57.895 | 3.99 | 0.00 | 34.37 | 4.57 |
403 | 407 | 2.963371 | GTCGCCTCGAAGTCCACT | 59.037 | 61.111 | 0.00 | 0.00 | 37.72 | 4.00 |
433 | 437 | 2.175878 | AGTCGAAATCTTGCTGCAGT | 57.824 | 45.000 | 16.64 | 0.00 | 0.00 | 4.40 |
522 | 548 | 2.517450 | GGATCGCCTCGCAAACTCG | 61.517 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
531 | 557 | 2.434359 | GCAAACTCGAGACCGGGG | 60.434 | 66.667 | 21.68 | 3.30 | 41.49 | 5.73 |
552 | 578 | 4.383770 | GGGAAACTCGGGATTGAATCAGTA | 60.384 | 45.833 | 7.56 | 0.00 | 0.00 | 2.74 |
555 | 581 | 3.733337 | ACTCGGGATTGAATCAGTATGC | 58.267 | 45.455 | 7.56 | 0.00 | 34.76 | 3.14 |
557 | 583 | 1.800586 | CGGGATTGAATCAGTATGCGG | 59.199 | 52.381 | 7.56 | 0.00 | 34.76 | 5.69 |
561 | 587 | 4.130118 | GGATTGAATCAGTATGCGGAAGT | 58.870 | 43.478 | 7.56 | 0.00 | 34.76 | 3.01 |
562 | 588 | 5.297547 | GGATTGAATCAGTATGCGGAAGTA | 58.702 | 41.667 | 7.56 | 0.00 | 34.76 | 2.24 |
608 | 635 | 2.386064 | TTAAAGCCACGCACCGGAGT | 62.386 | 55.000 | 9.46 | 1.54 | 0.00 | 3.85 |
640 | 667 | 2.618709 | GGAGGCGAAATCGGATTCATTT | 59.381 | 45.455 | 3.28 | 0.00 | 40.23 | 2.32 |
641 | 668 | 3.066760 | GGAGGCGAAATCGGATTCATTTT | 59.933 | 43.478 | 3.28 | 0.00 | 40.23 | 1.82 |
642 | 669 | 4.032703 | AGGCGAAATCGGATTCATTTTG | 57.967 | 40.909 | 3.28 | 0.00 | 40.23 | 2.44 |
643 | 670 | 3.443681 | AGGCGAAATCGGATTCATTTTGT | 59.556 | 39.130 | 3.28 | 0.00 | 40.23 | 2.83 |
644 | 671 | 4.082245 | AGGCGAAATCGGATTCATTTTGTT | 60.082 | 37.500 | 3.28 | 0.00 | 40.23 | 2.83 |
656 | 683 | 7.459604 | CGGATTCATTTTGTTTTCGTAATCGTG | 60.460 | 37.037 | 0.00 | 0.00 | 38.33 | 4.35 |
659 | 686 | 3.589061 | TTTGTTTTCGTAATCGTGCGT | 57.411 | 38.095 | 0.00 | 0.00 | 38.33 | 5.24 |
666 | 693 | 2.047750 | TAATCGTGCGTGCAGGCA | 60.048 | 55.556 | 28.89 | 28.89 | 41.45 | 4.75 |
702 | 729 | 3.934391 | GACCTGGCAACCGACCTCG | 62.934 | 68.421 | 0.00 | 0.00 | 39.44 | 4.63 |
706 | 733 | 2.264794 | GGCAACCGACCTCGTGAT | 59.735 | 61.111 | 0.00 | 0.00 | 37.74 | 3.06 |
715 | 742 | 1.796982 | CGACCTCGTGATGAGCTTCTG | 60.797 | 57.143 | 0.00 | 0.00 | 43.82 | 3.02 |
737 | 764 | 4.024387 | TGCGCTTTGGTAAGAACAGTTAAG | 60.024 | 41.667 | 9.73 | 0.00 | 32.92 | 1.85 |
740 | 767 | 5.334879 | CGCTTTGGTAAGAACAGTTAAGCAT | 60.335 | 40.000 | 12.86 | 0.00 | 37.25 | 3.79 |
741 | 768 | 6.128391 | CGCTTTGGTAAGAACAGTTAAGCATA | 60.128 | 38.462 | 12.86 | 2.08 | 37.25 | 3.14 |
742 | 769 | 7.414098 | CGCTTTGGTAAGAACAGTTAAGCATAT | 60.414 | 37.037 | 12.86 | 0.00 | 37.25 | 1.78 |
916 | 953 | 1.672363 | GTTTGGTTTCGGTTTCGGACT | 59.328 | 47.619 | 0.00 | 0.00 | 36.95 | 3.85 |
918 | 955 | 1.301423 | TGGTTTCGGTTTCGGACTTG | 58.699 | 50.000 | 0.00 | 0.00 | 36.95 | 3.16 |
919 | 956 | 0.040692 | GGTTTCGGTTTCGGACTTGC | 60.041 | 55.000 | 0.00 | 0.00 | 36.95 | 4.01 |
952 | 990 | 3.196913 | TTCGCACACGCACCTACGA | 62.197 | 57.895 | 0.00 | 0.00 | 39.84 | 3.43 |
964 | 1002 | 2.768492 | CCTACGAAGGGCGCTACGT | 61.768 | 63.158 | 19.80 | 19.80 | 46.04 | 3.57 |
966 | 1004 | 0.041488 | CTACGAAGGGCGCTACGTAG | 60.041 | 60.000 | 26.18 | 26.18 | 46.91 | 3.51 |
999 | 1037 | 0.891449 | GAGGAGCCGGAGATCGATCA | 60.891 | 60.000 | 26.47 | 0.00 | 42.43 | 2.92 |
1004 | 1042 | 0.318441 | GCCGGAGATCGATCAATGGA | 59.682 | 55.000 | 26.47 | 0.00 | 42.43 | 3.41 |
1011 | 1049 | 0.979665 | ATCGATCAATGGAGGCGGAT | 59.020 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1014 | 1052 | 1.517242 | GATCAATGGAGGCGGATGAC | 58.483 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1149 | 1193 | 3.064987 | GCGCGTCTCTTCCTGGCTA | 62.065 | 63.158 | 8.43 | 0.00 | 0.00 | 3.93 |
1225 | 1269 | 3.120511 | GCTTAGACTTTGGTTTCTCTGCG | 60.121 | 47.826 | 0.00 | 0.00 | 0.00 | 5.18 |
1229 | 1273 | 1.202486 | ACTTTGGTTTCTCTGCGTCGA | 60.202 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
1233 | 1277 | 1.202486 | TGGTTTCTCTGCGTCGACTTT | 60.202 | 47.619 | 14.70 | 0.00 | 0.00 | 2.66 |
1235 | 1279 | 2.348591 | GGTTTCTCTGCGTCGACTTTTG | 60.349 | 50.000 | 14.70 | 0.00 | 0.00 | 2.44 |
1236 | 1280 | 2.218953 | TTCTCTGCGTCGACTTTTGT | 57.781 | 45.000 | 14.70 | 0.00 | 0.00 | 2.83 |
1237 | 1281 | 1.767289 | TCTCTGCGTCGACTTTTGTC | 58.233 | 50.000 | 14.70 | 0.00 | 45.55 | 3.18 |
1269 | 1313 | 2.605823 | CGTGAGTGTGTCTCTGAACTCC | 60.606 | 54.545 | 4.49 | 0.00 | 43.13 | 3.85 |
1280 | 1324 | 6.540551 | GTGTCTCTGAACTCCTTTTTCTCTTT | 59.459 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
1387 | 1431 | 0.400213 | TCAAGGTCATCCGCTGGTTT | 59.600 | 50.000 | 0.00 | 0.00 | 39.05 | 3.27 |
1412 | 1456 | 2.056985 | CAGATCCCCTGCTAGGCTC | 58.943 | 63.158 | 0.00 | 0.00 | 35.89 | 4.70 |
1413 | 1457 | 1.532794 | AGATCCCCTGCTAGGCTCG | 60.533 | 63.158 | 0.00 | 0.00 | 32.73 | 5.03 |
1435 | 1479 | 4.322049 | CGTCAATTGTCCTTCTGGAGTAGT | 60.322 | 45.833 | 5.13 | 0.00 | 44.16 | 2.73 |
1451 | 1495 | 9.871238 | TCTGGAGTAGTAAATGTTGTTATCTTC | 57.129 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
1503 | 1665 | 4.887071 | ACGAGAGGCCAGAGATATGATATC | 59.113 | 45.833 | 5.01 | 4.27 | 0.00 | 1.63 |
1536 | 1698 | 2.429610 | GCTTCCCACGTCTCACCTAATA | 59.570 | 50.000 | 0.00 | 0.00 | 0.00 | 0.98 |
1539 | 1701 | 5.671493 | CTTCCCACGTCTCACCTAATAAAT | 58.329 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1540 | 1702 | 6.684613 | GCTTCCCACGTCTCACCTAATAAATA | 60.685 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
1541 | 1703 | 6.795144 | TCCCACGTCTCACCTAATAAATAA | 57.205 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1543 | 1705 | 7.270047 | TCCCACGTCTCACCTAATAAATAAAG | 58.730 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
1544 | 1706 | 6.018180 | CCCACGTCTCACCTAATAAATAAAGC | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
1545 | 1707 | 6.292168 | CCACGTCTCACCTAATAAATAAAGCG | 60.292 | 42.308 | 0.00 | 0.00 | 0.00 | 4.68 |
1546 | 1708 | 6.474427 | CACGTCTCACCTAATAAATAAAGCGA | 59.526 | 38.462 | 0.00 | 0.00 | 0.00 | 4.93 |
1547 | 1709 | 6.474751 | ACGTCTCACCTAATAAATAAAGCGAC | 59.525 | 38.462 | 0.00 | 0.00 | 0.00 | 5.19 |
1548 | 1710 | 6.344780 | CGTCTCACCTAATAAATAAAGCGACG | 60.345 | 42.308 | 0.00 | 0.00 | 33.37 | 5.12 |
1619 | 1781 | 4.698201 | TTCATGACCCTGACACAACTTA | 57.302 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
1620 | 1782 | 4.908601 | TCATGACCCTGACACAACTTAT | 57.091 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
1621 | 1783 | 4.578871 | TCATGACCCTGACACAACTTATG | 58.421 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
1622 | 1784 | 4.041567 | TCATGACCCTGACACAACTTATGT | 59.958 | 41.667 | 0.00 | 0.00 | 45.34 | 2.29 |
1623 | 1785 | 5.247337 | TCATGACCCTGACACAACTTATGTA | 59.753 | 40.000 | 0.00 | 0.00 | 41.46 | 2.29 |
1624 | 1786 | 5.755409 | TGACCCTGACACAACTTATGTAT | 57.245 | 39.130 | 0.00 | 0.00 | 41.46 | 2.29 |
1625 | 1787 | 5.487433 | TGACCCTGACACAACTTATGTATG | 58.513 | 41.667 | 0.00 | 0.00 | 41.46 | 2.39 |
1626 | 1788 | 5.012664 | TGACCCTGACACAACTTATGTATGT | 59.987 | 40.000 | 0.00 | 0.00 | 41.46 | 2.29 |
1627 | 1789 | 6.211785 | TGACCCTGACACAACTTATGTATGTA | 59.788 | 38.462 | 0.21 | 0.00 | 41.46 | 2.29 |
1628 | 1790 | 6.403878 | ACCCTGACACAACTTATGTATGTAC | 58.596 | 40.000 | 0.00 | 0.00 | 41.46 | 2.90 |
1629 | 1791 | 6.014070 | ACCCTGACACAACTTATGTATGTACA | 60.014 | 38.462 | 0.00 | 0.00 | 41.46 | 2.90 |
1631 | 1793 | 7.552687 | CCCTGACACAACTTATGTATGTACATT | 59.447 | 37.037 | 14.77 | 0.00 | 43.99 | 2.71 |
1632 | 1794 | 8.946085 | CCTGACACAACTTATGTATGTACATTT | 58.054 | 33.333 | 14.77 | 2.42 | 43.99 | 2.32 |
1653 | 1815 | 9.620660 | ACATTTTGATAACAAGTATTTTCGGAC | 57.379 | 29.630 | 0.00 | 0.00 | 37.32 | 4.79 |
1654 | 1816 | 8.785101 | CATTTTGATAACAAGTATTTTCGGACG | 58.215 | 33.333 | 0.00 | 0.00 | 37.32 | 4.79 |
1655 | 1817 | 6.411630 | TTGATAACAAGTATTTTCGGACGG | 57.588 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
1656 | 1818 | 5.722263 | TGATAACAAGTATTTTCGGACGGA | 58.278 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
1657 | 1819 | 5.808540 | TGATAACAAGTATTTTCGGACGGAG | 59.191 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1658 | 1820 | 2.968675 | ACAAGTATTTTCGGACGGAGG | 58.031 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
1659 | 1821 | 2.564062 | ACAAGTATTTTCGGACGGAGGA | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
1660 | 1822 | 3.007182 | ACAAGTATTTTCGGACGGAGGAA | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
1661 | 1823 | 3.521947 | AGTATTTTCGGACGGAGGAAG | 57.478 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
1662 | 1824 | 2.830321 | AGTATTTTCGGACGGAGGAAGT | 59.170 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
1663 | 1825 | 4.019174 | AGTATTTTCGGACGGAGGAAGTA | 58.981 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1664 | 1826 | 4.648307 | AGTATTTTCGGACGGAGGAAGTAT | 59.352 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
1665 | 1827 | 2.953466 | TTTCGGACGGAGGAAGTATG | 57.047 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1666 | 1828 | 1.843368 | TTCGGACGGAGGAAGTATGT | 58.157 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1667 | 1829 | 2.715749 | TCGGACGGAGGAAGTATGTA | 57.284 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1668 | 1830 | 3.219176 | TCGGACGGAGGAAGTATGTAT | 57.781 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
1669 | 1831 | 3.144506 | TCGGACGGAGGAAGTATGTATC | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1670 | 1832 | 3.147629 | CGGACGGAGGAAGTATGTATCT | 58.852 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1671 | 1833 | 3.568853 | CGGACGGAGGAAGTATGTATCTT | 59.431 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
1672 | 1834 | 4.556898 | CGGACGGAGGAAGTATGTATCTTG | 60.557 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1673 | 1835 | 4.583489 | GGACGGAGGAAGTATGTATCTTGA | 59.417 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
1674 | 1836 | 5.068723 | GGACGGAGGAAGTATGTATCTTGAA | 59.931 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1675 | 1837 | 6.406624 | GGACGGAGGAAGTATGTATCTTGAAA | 60.407 | 42.308 | 0.00 | 0.00 | 0.00 | 2.69 |
1676 | 1838 | 6.942976 | ACGGAGGAAGTATGTATCTTGAAAA | 58.057 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1677 | 1839 | 7.391620 | ACGGAGGAAGTATGTATCTTGAAAAA | 58.608 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
1678 | 1840 | 8.047310 | ACGGAGGAAGTATGTATCTTGAAAAAT | 58.953 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1679 | 1841 | 8.552034 | CGGAGGAAGTATGTATCTTGAAAAATC | 58.448 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
1680 | 1842 | 8.552034 | GGAGGAAGTATGTATCTTGAAAAATCG | 58.448 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
1681 | 1843 | 9.314321 | GAGGAAGTATGTATCTTGAAAAATCGA | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
1682 | 1844 | 9.838339 | AGGAAGTATGTATCTTGAAAAATCGAT | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 3.59 |
1683 | 1845 | 9.869844 | GGAAGTATGTATCTTGAAAAATCGATG | 57.130 | 33.333 | 0.00 | 0.00 | 0.00 | 3.84 |
1686 | 1848 | 9.823647 | AGTATGTATCTTGAAAAATCGATGACT | 57.176 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
1690 | 1852 | 9.599866 | TGTATCTTGAAAAATCGATGACTATGT | 57.400 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
1702 | 1864 | 9.561270 | AATCGATGACTATGTTATGTAGATTCG | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
1703 | 1865 | 8.095937 | TCGATGACTATGTTATGTAGATTCGT | 57.904 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
1704 | 1866 | 9.211485 | TCGATGACTATGTTATGTAGATTCGTA | 57.789 | 33.333 | 0.00 | 0.00 | 0.00 | 3.43 |
1705 | 1867 | 9.989869 | CGATGACTATGTTATGTAGATTCGTAT | 57.010 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
1723 | 1885 | 9.653287 | GATTCGTATATGAATCTGGATGGTTAA | 57.347 | 33.333 | 28.93 | 0.00 | 46.87 | 2.01 |
1725 | 1887 | 9.839817 | TTCGTATATGAATCTGGATGGTTAAAA | 57.160 | 29.630 | 3.14 | 0.00 | 0.00 | 1.52 |
1726 | 1888 | 9.489084 | TCGTATATGAATCTGGATGGTTAAAAG | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
1727 | 1889 | 8.721478 | CGTATATGAATCTGGATGGTTAAAAGG | 58.279 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
1728 | 1890 | 9.014297 | GTATATGAATCTGGATGGTTAAAAGGG | 57.986 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
1729 | 1891 | 4.609301 | TGAATCTGGATGGTTAAAAGGGG | 58.391 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
1730 | 1892 | 4.293634 | TGAATCTGGATGGTTAAAAGGGGA | 59.706 | 41.667 | 0.00 | 0.00 | 0.00 | 4.81 |
1731 | 1893 | 4.965283 | ATCTGGATGGTTAAAAGGGGAA | 57.035 | 40.909 | 0.00 | 0.00 | 0.00 | 3.97 |
1732 | 1894 | 4.750833 | TCTGGATGGTTAAAAGGGGAAA | 57.249 | 40.909 | 0.00 | 0.00 | 0.00 | 3.13 |
1733 | 1895 | 4.412843 | TCTGGATGGTTAAAAGGGGAAAC | 58.587 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
1734 | 1896 | 3.158676 | TGGATGGTTAAAAGGGGAAACG | 58.841 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
1735 | 1897 | 3.181431 | TGGATGGTTAAAAGGGGAAACGA | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
1736 | 1898 | 3.827876 | GGATGGTTAAAAGGGGAAACGAA | 59.172 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
1737 | 1899 | 4.321452 | GGATGGTTAAAAGGGGAAACGAAC | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
1738 | 1900 | 3.900971 | TGGTTAAAAGGGGAAACGAACT | 58.099 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
1739 | 1901 | 5.046288 | TGGTTAAAAGGGGAAACGAACTA | 57.954 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
1751 | 1913 | 6.460814 | GGGGAAACGAACTAGTATCTACCTTC | 60.461 | 46.154 | 0.00 | 0.00 | 0.00 | 3.46 |
1779 | 1941 | 9.823647 | AAAATCGATGACTATGTTCTGTAGATT | 57.176 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
1780 | 1942 | 9.469807 | AAATCGATGACTATGTTCTGTAGATTC | 57.530 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1781 | 1943 | 6.971602 | TCGATGACTATGTTCTGTAGATTCC | 58.028 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1782 | 1944 | 6.773200 | TCGATGACTATGTTCTGTAGATTCCT | 59.227 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
1783 | 1945 | 7.937394 | TCGATGACTATGTTCTGTAGATTCCTA | 59.063 | 37.037 | 0.00 | 0.00 | 0.00 | 2.94 |
1784 | 1946 | 8.735315 | CGATGACTATGTTCTGTAGATTCCTAT | 58.265 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1812 | 1974 | 5.283876 | TCTGGATGGTTAAAAGGGGAAAT | 57.716 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
1875 | 2142 | 4.739716 | GGTGCAACACATTTTGTAGTCTTG | 59.260 | 41.667 | 0.00 | 0.00 | 37.51 | 3.02 |
1883 | 2150 | 6.886459 | ACACATTTTGTAGTCTTGGCATCTAT | 59.114 | 34.615 | 0.00 | 0.00 | 36.32 | 1.98 |
1911 | 2191 | 4.425520 | GACCTCTCAAACGTCTAATCAGG | 58.574 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1947 | 2227 | 0.037232 | CGGACAGGTGAAAGGAGGAC | 60.037 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1981 | 2261 | 0.029300 | CACAACCCTCACTTTGTGCG | 59.971 | 55.000 | 1.80 | 0.00 | 44.42 | 5.34 |
1991 | 2271 | 0.889186 | ACTTTGTGCGGACATGTCCC | 60.889 | 55.000 | 34.05 | 26.65 | 46.96 | 4.46 |
1996 | 2276 | 1.003696 | TGTGCGGACATGTCCCATAAA | 59.996 | 47.619 | 34.05 | 19.87 | 46.96 | 1.40 |
2013 | 2293 | 7.393515 | GTCCCATAAATCCACAAATCCCTATAC | 59.606 | 40.741 | 0.00 | 0.00 | 0.00 | 1.47 |
2028 | 2308 | 5.473273 | TCCCTATACCCAACTCATATGTGT | 58.527 | 41.667 | 4.59 | 4.59 | 0.00 | 3.72 |
2049 | 2330 | 1.978580 | GGAGGATATGGGATGTTCGGT | 59.021 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
2056 | 2338 | 0.912487 | TGGGATGTTCGGTAGCCCTT | 60.912 | 55.000 | 8.78 | 0.00 | 44.16 | 3.95 |
2080 | 2362 | 2.635787 | TAGGATGCGGCCTACCTCGT | 62.636 | 60.000 | 11.72 | 0.00 | 39.50 | 4.18 |
2086 | 2368 | 1.751927 | CGGCCTACCTCGTACCACT | 60.752 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
2090 | 2372 | 2.344025 | GCCTACCTCGTACCACTTTTG | 58.656 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
2091 | 2373 | 2.289257 | GCCTACCTCGTACCACTTTTGT | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2092 | 2374 | 3.582780 | CCTACCTCGTACCACTTTTGTC | 58.417 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2093 | 2375 | 3.257624 | CCTACCTCGTACCACTTTTGTCT | 59.742 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2096 | 2378 | 4.124970 | ACCTCGTACCACTTTTGTCTTTC | 58.875 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
2097 | 2379 | 4.141779 | ACCTCGTACCACTTTTGTCTTTCT | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2098 | 2380 | 4.814771 | CCTCGTACCACTTTTGTCTTTCTT | 59.185 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2139 | 2422 | 7.878547 | TCATATGCATTTGACTGGACAATTA | 57.121 | 32.000 | 14.89 | 0.00 | 0.00 | 1.40 |
2146 | 2429 | 4.993705 | TTGACTGGACAATTAGGAAGGT | 57.006 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
2152 | 2435 | 5.546499 | ACTGGACAATTAGGAAGGTTGTAGA | 59.454 | 40.000 | 0.00 | 0.00 | 36.30 | 2.59 |
2156 | 2439 | 6.301169 | ACAATTAGGAAGGTTGTAGAGGAG | 57.699 | 41.667 | 0.00 | 0.00 | 34.55 | 3.69 |
2199 | 2482 | 3.740141 | ATGAAGACTCAAAACGGACACGT | 60.740 | 43.478 | 0.00 | 0.00 | 45.41 | 4.49 |
2247 | 2531 | 5.482175 | ACGGATGTTTGGGGATCAAAATTAA | 59.518 | 36.000 | 0.00 | 0.00 | 45.74 | 1.40 |
2254 | 2538 | 6.942163 | TTGGGGATCAAAATTAACCAATCA | 57.058 | 33.333 | 0.00 | 0.00 | 32.10 | 2.57 |
2257 | 2541 | 7.583024 | TTGGGGATCAAAATTAACCAATCATGG | 60.583 | 37.037 | 0.00 | 0.00 | 41.64 | 3.66 |
2293 | 2577 | 1.969923 | CAATCTTTGGGTTGGCCTCAA | 59.030 | 47.619 | 3.32 | 0.53 | 34.45 | 3.02 |
2320 | 2604 | 2.317609 | CCTTGACGAGGCGGTGTTG | 61.318 | 63.158 | 0.00 | 0.00 | 39.09 | 3.33 |
2330 | 2614 | 3.126171 | CGAGGCGGTGTTGATGAAATTAA | 59.874 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2331 | 2615 | 4.378978 | CGAGGCGGTGTTGATGAAATTAAA | 60.379 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
2332 | 2616 | 4.805219 | AGGCGGTGTTGATGAAATTAAAC | 58.195 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
2333 | 2617 | 4.279671 | AGGCGGTGTTGATGAAATTAAACA | 59.720 | 37.500 | 0.00 | 0.00 | 32.81 | 2.83 |
2334 | 2618 | 4.384547 | GGCGGTGTTGATGAAATTAAACAC | 59.615 | 41.667 | 8.61 | 8.61 | 45.65 | 3.32 |
2335 | 2619 | 4.979197 | GCGGTGTTGATGAAATTAAACACA | 59.021 | 37.500 | 16.61 | 0.00 | 46.95 | 3.72 |
2336 | 2620 | 5.633182 | GCGGTGTTGATGAAATTAAACACAT | 59.367 | 36.000 | 16.61 | 0.00 | 46.95 | 3.21 |
2337 | 2621 | 6.145371 | GCGGTGTTGATGAAATTAAACACATT | 59.855 | 34.615 | 16.61 | 0.00 | 46.95 | 2.71 |
2338 | 2622 | 7.327275 | GCGGTGTTGATGAAATTAAACACATTA | 59.673 | 33.333 | 16.61 | 0.00 | 46.95 | 1.90 |
2339 | 2623 | 9.186323 | CGGTGTTGATGAAATTAAACACATTAA | 57.814 | 29.630 | 16.61 | 0.00 | 46.95 | 1.40 |
2342 | 2626 | 9.202273 | TGTTGATGAAATTAAACACATTAAGGC | 57.798 | 29.630 | 0.00 | 0.00 | 36.94 | 4.35 |
2343 | 2627 | 8.372521 | GTTGATGAAATTAAACACATTAAGGCG | 58.627 | 33.333 | 0.00 | 0.00 | 36.94 | 5.52 |
2344 | 2628 | 7.598278 | TGATGAAATTAAACACATTAAGGCGT | 58.402 | 30.769 | 0.00 | 0.00 | 36.94 | 5.68 |
2345 | 2629 | 7.540400 | TGATGAAATTAAACACATTAAGGCGTG | 59.460 | 33.333 | 0.00 | 0.00 | 36.94 | 5.34 |
2346 | 2630 | 6.153067 | TGAAATTAAACACATTAAGGCGTGG | 58.847 | 36.000 | 7.22 | 0.00 | 36.94 | 4.94 |
2347 | 2631 | 5.715434 | AATTAAACACATTAAGGCGTGGT | 57.285 | 34.783 | 7.22 | 0.00 | 36.94 | 4.16 |
2348 | 2632 | 6.821031 | AATTAAACACATTAAGGCGTGGTA | 57.179 | 33.333 | 7.22 | 0.00 | 36.94 | 3.25 |
2349 | 2633 | 5.866335 | TTAAACACATTAAGGCGTGGTAG | 57.134 | 39.130 | 7.22 | 0.00 | 37.45 | 3.18 |
2350 | 2634 | 3.688694 | AACACATTAAGGCGTGGTAGA | 57.311 | 42.857 | 7.22 | 0.00 | 37.45 | 2.59 |
2351 | 2635 | 3.688694 | ACACATTAAGGCGTGGTAGAA | 57.311 | 42.857 | 7.22 | 0.00 | 37.45 | 2.10 |
2352 | 2636 | 4.010667 | ACACATTAAGGCGTGGTAGAAA | 57.989 | 40.909 | 7.22 | 0.00 | 37.45 | 2.52 |
2353 | 2637 | 4.000988 | ACACATTAAGGCGTGGTAGAAAG | 58.999 | 43.478 | 7.22 | 0.00 | 37.45 | 2.62 |
2354 | 2638 | 3.374058 | CACATTAAGGCGTGGTAGAAAGG | 59.626 | 47.826 | 0.00 | 0.00 | 0.00 | 3.11 |
2355 | 2639 | 3.008704 | ACATTAAGGCGTGGTAGAAAGGT | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
2356 | 2640 | 2.754946 | TAAGGCGTGGTAGAAAGGTG | 57.245 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2357 | 2641 | 0.036306 | AAGGCGTGGTAGAAAGGTGG | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2358 | 2642 | 2.038837 | GGCGTGGTAGAAAGGTGGC | 61.039 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
2359 | 2643 | 2.038837 | GCGTGGTAGAAAGGTGGCC | 61.039 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
2360 | 2644 | 1.373435 | CGTGGTAGAAAGGTGGCCA | 59.627 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
2361 | 2645 | 0.250553 | CGTGGTAGAAAGGTGGCCAA | 60.251 | 55.000 | 7.24 | 0.00 | 0.00 | 4.52 |
2362 | 2646 | 1.244816 | GTGGTAGAAAGGTGGCCAAC | 58.755 | 55.000 | 14.82 | 14.82 | 0.00 | 3.77 |
2373 | 2657 | 2.074099 | TGGCCAACCAGCTATGTCA | 58.926 | 52.632 | 0.61 | 0.00 | 42.67 | 3.58 |
2374 | 2658 | 0.322456 | TGGCCAACCAGCTATGTCAC | 60.322 | 55.000 | 0.61 | 0.00 | 42.67 | 3.67 |
2375 | 2659 | 1.369091 | GGCCAACCAGCTATGTCACG | 61.369 | 60.000 | 0.00 | 0.00 | 35.26 | 4.35 |
2376 | 2660 | 0.673644 | GCCAACCAGCTATGTCACGT | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2377 | 2661 | 1.078709 | CCAACCAGCTATGTCACGTG | 58.921 | 55.000 | 9.94 | 9.94 | 0.00 | 4.49 |
2378 | 2662 | 1.078709 | CAACCAGCTATGTCACGTGG | 58.921 | 55.000 | 17.00 | 0.00 | 0.00 | 4.94 |
2379 | 2663 | 0.673644 | AACCAGCTATGTCACGTGGC | 60.674 | 55.000 | 14.58 | 14.58 | 0.00 | 5.01 |
2380 | 2664 | 2.167219 | CCAGCTATGTCACGTGGCG | 61.167 | 63.158 | 16.50 | 2.04 | 0.00 | 5.69 |
2381 | 2665 | 2.509336 | AGCTATGTCACGTGGCGC | 60.509 | 61.111 | 16.50 | 12.99 | 0.00 | 6.53 |
2382 | 2666 | 2.813474 | GCTATGTCACGTGGCGCA | 60.813 | 61.111 | 16.50 | 12.65 | 0.00 | 6.09 |
2383 | 2667 | 2.173669 | GCTATGTCACGTGGCGCAT | 61.174 | 57.895 | 16.50 | 18.23 | 0.00 | 4.73 |
2384 | 2668 | 0.874175 | GCTATGTCACGTGGCGCATA | 60.874 | 55.000 | 16.50 | 18.36 | 0.00 | 3.14 |
2385 | 2669 | 0.852777 | CTATGTCACGTGGCGCATAC | 59.147 | 55.000 | 16.50 | 6.87 | 0.00 | 2.39 |
2386 | 2670 | 0.458260 | TATGTCACGTGGCGCATACT | 59.542 | 50.000 | 16.50 | 0.00 | 0.00 | 2.12 |
2387 | 2671 | 1.083806 | ATGTCACGTGGCGCATACTG | 61.084 | 55.000 | 16.50 | 8.20 | 0.00 | 2.74 |
2388 | 2672 | 2.125713 | TCACGTGGCGCATACTGG | 60.126 | 61.111 | 17.00 | 2.76 | 0.00 | 4.00 |
2389 | 2673 | 2.434185 | CACGTGGCGCATACTGGT | 60.434 | 61.111 | 10.83 | 0.00 | 0.00 | 4.00 |
2390 | 2674 | 2.032634 | CACGTGGCGCATACTGGTT | 61.033 | 57.895 | 10.83 | 0.00 | 0.00 | 3.67 |
2391 | 2675 | 2.032634 | ACGTGGCGCATACTGGTTG | 61.033 | 57.895 | 10.83 | 0.00 | 0.00 | 3.77 |
2392 | 2676 | 2.749865 | CGTGGCGCATACTGGTTGG | 61.750 | 63.158 | 10.83 | 0.00 | 0.00 | 3.77 |
2393 | 2677 | 2.749839 | TGGCGCATACTGGTTGGC | 60.750 | 61.111 | 10.83 | 0.00 | 0.00 | 4.52 |
2394 | 2678 | 3.518068 | GGCGCATACTGGTTGGCC | 61.518 | 66.667 | 10.83 | 0.00 | 0.00 | 5.36 |
2395 | 2679 | 3.876198 | GCGCATACTGGTTGGCCG | 61.876 | 66.667 | 0.30 | 0.00 | 37.67 | 6.13 |
2396 | 2680 | 2.435938 | CGCATACTGGTTGGCCGT | 60.436 | 61.111 | 0.00 | 0.00 | 37.67 | 5.68 |
2397 | 2681 | 2.749865 | CGCATACTGGTTGGCCGTG | 61.750 | 63.158 | 0.00 | 0.00 | 37.67 | 4.94 |
2398 | 2682 | 2.406616 | GCATACTGGTTGGCCGTGG | 61.407 | 63.158 | 0.00 | 0.00 | 37.67 | 4.94 |
2399 | 2683 | 1.002624 | CATACTGGTTGGCCGTGGT | 60.003 | 57.895 | 0.00 | 0.00 | 37.67 | 4.16 |
2400 | 2684 | 1.002624 | ATACTGGTTGGCCGTGGTG | 60.003 | 57.895 | 0.00 | 0.00 | 37.67 | 4.17 |
2401 | 2685 | 1.485294 | ATACTGGTTGGCCGTGGTGA | 61.485 | 55.000 | 0.00 | 0.00 | 37.67 | 4.02 |
2402 | 2686 | 1.697082 | TACTGGTTGGCCGTGGTGAA | 61.697 | 55.000 | 0.00 | 0.00 | 37.67 | 3.18 |
2403 | 2687 | 1.826054 | CTGGTTGGCCGTGGTGAAA | 60.826 | 57.895 | 0.00 | 0.00 | 37.67 | 2.69 |
2404 | 2688 | 1.379977 | TGGTTGGCCGTGGTGAAAA | 60.380 | 52.632 | 0.00 | 0.00 | 37.67 | 2.29 |
2405 | 2689 | 0.970937 | TGGTTGGCCGTGGTGAAAAA | 60.971 | 50.000 | 0.00 | 0.00 | 37.67 | 1.94 |
2406 | 2690 | 0.249280 | GGTTGGCCGTGGTGAAAAAG | 60.249 | 55.000 | 0.00 | 0.00 | 0.00 | 2.27 |
2407 | 2691 | 0.458260 | GTTGGCCGTGGTGAAAAAGT | 59.542 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2408 | 2692 | 1.134936 | GTTGGCCGTGGTGAAAAAGTT | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
69 | 72 | 2.361483 | ATTGCCGCACCATGCTCA | 60.361 | 55.556 | 0.00 | 0.00 | 42.25 | 4.26 |
125 | 128 | 2.514824 | GGCAGGGACCAAGCGATC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
224 | 228 | 3.399181 | GGACCTCACCGGCATCCA | 61.399 | 66.667 | 0.00 | 0.00 | 35.61 | 3.41 |
334 | 338 | 1.661821 | GATCATCGAGTTCCCCGCG | 60.662 | 63.158 | 0.00 | 0.00 | 37.75 | 6.46 |
403 | 407 | 5.867716 | GCAAGATTTCGACTACTTCTTGGTA | 59.132 | 40.000 | 16.93 | 0.00 | 42.13 | 3.25 |
522 | 548 | 2.577593 | CCGAGTTTCCCCGGTCTC | 59.422 | 66.667 | 0.00 | 0.00 | 40.78 | 3.36 |
531 | 557 | 5.277538 | GCATACTGATTCAATCCCGAGTTTC | 60.278 | 44.000 | 0.00 | 0.00 | 0.00 | 2.78 |
552 | 578 | 2.167662 | CCCTGGTTTTTACTTCCGCAT | 58.832 | 47.619 | 0.00 | 0.00 | 0.00 | 4.73 |
555 | 581 | 0.519961 | CGCCCTGGTTTTTACTTCCG | 59.480 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
557 | 583 | 0.242825 | GCCGCCCTGGTTTTTACTTC | 59.757 | 55.000 | 0.00 | 0.00 | 41.21 | 3.01 |
561 | 587 | 1.001887 | ATCGCCGCCCTGGTTTTTA | 60.002 | 52.632 | 0.00 | 0.00 | 41.21 | 1.52 |
562 | 588 | 2.282887 | ATCGCCGCCCTGGTTTTT | 60.283 | 55.556 | 0.00 | 0.00 | 41.21 | 1.94 |
608 | 635 | 4.501071 | GATTTCGCCTCCTACAGTGTTTA | 58.499 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
640 | 667 | 2.893837 | CACGCACGATTACGAAAACAA | 58.106 | 42.857 | 0.00 | 0.00 | 42.66 | 2.83 |
641 | 668 | 1.397441 | GCACGCACGATTACGAAAACA | 60.397 | 47.619 | 0.00 | 0.00 | 42.66 | 2.83 |
642 | 669 | 1.235695 | GCACGCACGATTACGAAAAC | 58.764 | 50.000 | 0.00 | 0.00 | 42.66 | 2.43 |
643 | 670 | 0.859882 | TGCACGCACGATTACGAAAA | 59.140 | 45.000 | 0.00 | 0.00 | 42.66 | 2.29 |
644 | 671 | 0.436913 | CTGCACGCACGATTACGAAA | 59.563 | 50.000 | 0.00 | 0.00 | 42.66 | 3.46 |
659 | 686 | 4.408821 | GATCCGGGTGTGCCTGCA | 62.409 | 66.667 | 0.00 | 0.00 | 39.86 | 4.41 |
702 | 729 | 4.198625 | AGCGCAGAAGCTCATCAC | 57.801 | 55.556 | 11.47 | 0.00 | 45.67 | 3.06 |
715 | 742 | 4.464112 | CTTAACTGTTCTTACCAAAGCGC | 58.536 | 43.478 | 0.00 | 0.00 | 32.36 | 5.92 |
737 | 764 | 5.278463 | CCACAGCCTTTGGTATGTTATATGC | 60.278 | 44.000 | 0.00 | 0.00 | 0.00 | 3.14 |
740 | 767 | 5.444744 | ACCACAGCCTTTGGTATGTTATA | 57.555 | 39.130 | 0.00 | 0.00 | 46.01 | 0.98 |
741 | 768 | 4.316025 | ACCACAGCCTTTGGTATGTTAT | 57.684 | 40.909 | 0.00 | 0.00 | 46.01 | 1.89 |
742 | 769 | 3.799432 | ACCACAGCCTTTGGTATGTTA | 57.201 | 42.857 | 0.00 | 0.00 | 46.01 | 2.41 |
849 | 884 | 2.664851 | CGAACTGCCAGCACCGAA | 60.665 | 61.111 | 0.00 | 0.00 | 0.00 | 4.30 |
916 | 953 | 2.306847 | GAACTGGGAAGTTGGAAGCAA | 58.693 | 47.619 | 0.00 | 0.00 | 31.35 | 3.91 |
918 | 955 | 0.875059 | CGAACTGGGAAGTTGGAAGC | 59.125 | 55.000 | 0.00 | 0.00 | 30.62 | 3.86 |
919 | 956 | 0.875059 | GCGAACTGGGAAGTTGGAAG | 59.125 | 55.000 | 5.00 | 0.00 | 30.62 | 3.46 |
952 | 990 | 1.252904 | TGTTCCTACGTAGCGCCCTT | 61.253 | 55.000 | 17.41 | 0.00 | 0.00 | 3.95 |
956 | 994 | 1.408474 | CGGTTGTTCCTACGTAGCGC | 61.408 | 60.000 | 17.41 | 0.00 | 0.00 | 5.92 |
961 | 999 | 1.005394 | CAGCCGGTTGTTCCTACGT | 60.005 | 57.895 | 10.61 | 0.00 | 0.00 | 3.57 |
964 | 1002 | 1.550130 | CCTCCAGCCGGTTGTTCCTA | 61.550 | 60.000 | 17.69 | 0.00 | 0.00 | 2.94 |
966 | 1004 | 2.359975 | CCTCCAGCCGGTTGTTCC | 60.360 | 66.667 | 17.69 | 0.00 | 0.00 | 3.62 |
1149 | 1193 | 2.060980 | GCATGAGGGTCGAGGGAGT | 61.061 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
1225 | 1269 | 1.658994 | TGGTGGTGACAAAAGTCGAC | 58.341 | 50.000 | 7.70 | 7.70 | 46.06 | 4.20 |
1229 | 1273 | 3.314080 | CACGTTATGGTGGTGACAAAAGT | 59.686 | 43.478 | 0.00 | 0.00 | 46.06 | 2.66 |
1233 | 1277 | 2.103432 | ACTCACGTTATGGTGGTGACAA | 59.897 | 45.455 | 0.00 | 0.00 | 46.06 | 3.18 |
1235 | 1279 | 2.066262 | CACTCACGTTATGGTGGTGAC | 58.934 | 52.381 | 0.00 | 0.00 | 39.41 | 3.67 |
1236 | 1280 | 1.689813 | ACACTCACGTTATGGTGGTGA | 59.310 | 47.619 | 15.92 | 4.33 | 39.41 | 4.02 |
1237 | 1281 | 1.798223 | CACACTCACGTTATGGTGGTG | 59.202 | 52.381 | 10.30 | 10.59 | 41.12 | 4.17 |
1238 | 1282 | 1.414919 | ACACACTCACGTTATGGTGGT | 59.585 | 47.619 | 10.69 | 4.64 | 38.46 | 4.16 |
1239 | 1283 | 2.066262 | GACACACTCACGTTATGGTGG | 58.934 | 52.381 | 10.69 | 4.19 | 38.46 | 4.61 |
1240 | 1284 | 2.987149 | GAGACACACTCACGTTATGGTG | 59.013 | 50.000 | 5.83 | 5.83 | 44.36 | 4.17 |
1241 | 1285 | 3.299340 | GAGACACACTCACGTTATGGT | 57.701 | 47.619 | 0.00 | 0.00 | 44.36 | 3.55 |
1269 | 1313 | 3.120649 | CGCCGACCTACAAAGAGAAAAAG | 60.121 | 47.826 | 0.00 | 0.00 | 0.00 | 2.27 |
1280 | 1324 | 4.129737 | GCTCAGCGCCGACCTACA | 62.130 | 66.667 | 2.29 | 0.00 | 0.00 | 2.74 |
1412 | 1456 | 3.045601 | ACTCCAGAAGGACAATTGACG | 57.954 | 47.619 | 13.59 | 0.00 | 39.61 | 4.35 |
1413 | 1457 | 5.153950 | ACTACTCCAGAAGGACAATTGAC | 57.846 | 43.478 | 13.59 | 5.81 | 39.61 | 3.18 |
1503 | 1665 | 1.197721 | GTGGGAAGCAGAAACACGATG | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 3.84 |
1536 | 1698 | 2.190981 | CTCTACGGCGTCGCTTTATTT | 58.809 | 47.619 | 19.21 | 0.00 | 40.63 | 1.40 |
1539 | 1701 | 1.430632 | CCTCTACGGCGTCGCTTTA | 59.569 | 57.895 | 19.21 | 7.60 | 40.63 | 1.85 |
1540 | 1702 | 2.181021 | CCTCTACGGCGTCGCTTT | 59.819 | 61.111 | 19.21 | 6.77 | 40.63 | 3.51 |
1627 | 1789 | 9.620660 | GTCCGAAAATACTTGTTATCAAAATGT | 57.379 | 29.630 | 0.00 | 0.00 | 32.87 | 2.71 |
1628 | 1790 | 8.785101 | CGTCCGAAAATACTTGTTATCAAAATG | 58.215 | 33.333 | 0.00 | 0.00 | 32.87 | 2.32 |
1629 | 1791 | 7.966204 | CCGTCCGAAAATACTTGTTATCAAAAT | 59.034 | 33.333 | 0.00 | 0.00 | 32.87 | 1.82 |
1630 | 1792 | 7.172875 | TCCGTCCGAAAATACTTGTTATCAAAA | 59.827 | 33.333 | 0.00 | 0.00 | 32.87 | 2.44 |
1631 | 1793 | 6.649973 | TCCGTCCGAAAATACTTGTTATCAAA | 59.350 | 34.615 | 0.00 | 0.00 | 32.87 | 2.69 |
1632 | 1794 | 6.164876 | TCCGTCCGAAAATACTTGTTATCAA | 58.835 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1633 | 1795 | 5.722263 | TCCGTCCGAAAATACTTGTTATCA | 58.278 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
1634 | 1796 | 5.233689 | CCTCCGTCCGAAAATACTTGTTATC | 59.766 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
1635 | 1797 | 5.105228 | TCCTCCGTCCGAAAATACTTGTTAT | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
1636 | 1798 | 4.220382 | TCCTCCGTCCGAAAATACTTGTTA | 59.780 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
1637 | 1799 | 3.007182 | TCCTCCGTCCGAAAATACTTGTT | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
1638 | 1800 | 2.564062 | TCCTCCGTCCGAAAATACTTGT | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1639 | 1801 | 3.241067 | TCCTCCGTCCGAAAATACTTG | 57.759 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
1640 | 1802 | 3.260128 | ACTTCCTCCGTCCGAAAATACTT | 59.740 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1641 | 1803 | 2.830321 | ACTTCCTCCGTCCGAAAATACT | 59.170 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
1642 | 1804 | 3.242549 | ACTTCCTCCGTCCGAAAATAC | 57.757 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
1643 | 1805 | 4.403432 | ACATACTTCCTCCGTCCGAAAATA | 59.597 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1644 | 1806 | 3.197116 | ACATACTTCCTCCGTCCGAAAAT | 59.803 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
1645 | 1807 | 2.564062 | ACATACTTCCTCCGTCCGAAAA | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
1646 | 1808 | 2.173519 | ACATACTTCCTCCGTCCGAAA | 58.826 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
1647 | 1809 | 1.843368 | ACATACTTCCTCCGTCCGAA | 58.157 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1648 | 1810 | 2.715749 | TACATACTTCCTCCGTCCGA | 57.284 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1649 | 1811 | 3.147629 | AGATACATACTTCCTCCGTCCG | 58.852 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1650 | 1812 | 4.583489 | TCAAGATACATACTTCCTCCGTCC | 59.417 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
1651 | 1813 | 5.769484 | TCAAGATACATACTTCCTCCGTC | 57.231 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
1652 | 1814 | 6.540438 | TTTCAAGATACATACTTCCTCCGT | 57.460 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
1653 | 1815 | 7.843490 | TTTTTCAAGATACATACTTCCTCCG | 57.157 | 36.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1654 | 1816 | 8.552034 | CGATTTTTCAAGATACATACTTCCTCC | 58.448 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
1655 | 1817 | 9.314321 | TCGATTTTTCAAGATACATACTTCCTC | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
1656 | 1818 | 9.838339 | ATCGATTTTTCAAGATACATACTTCCT | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
1657 | 1819 | 9.869844 | CATCGATTTTTCAAGATACATACTTCC | 57.130 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
1660 | 1822 | 9.823647 | AGTCATCGATTTTTCAAGATACATACT | 57.176 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
1664 | 1826 | 9.599866 | ACATAGTCATCGATTTTTCAAGATACA | 57.400 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
1676 | 1838 | 9.561270 | CGAATCTACATAACATAGTCATCGATT | 57.439 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
1677 | 1839 | 8.731605 | ACGAATCTACATAACATAGTCATCGAT | 58.268 | 33.333 | 0.00 | 0.00 | 31.25 | 3.59 |
1678 | 1840 | 8.095937 | ACGAATCTACATAACATAGTCATCGA | 57.904 | 34.615 | 0.00 | 0.00 | 31.25 | 3.59 |
1679 | 1841 | 9.989869 | ATACGAATCTACATAACATAGTCATCG | 57.010 | 33.333 | 0.00 | 0.00 | 0.00 | 3.84 |
1699 | 1861 | 9.839817 | TTTTAACCATCCAGATTCATATACGAA | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
1700 | 1862 | 9.489084 | CTTTTAACCATCCAGATTCATATACGA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 3.43 |
1701 | 1863 | 8.721478 | CCTTTTAACCATCCAGATTCATATACG | 58.279 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
1702 | 1864 | 9.014297 | CCCTTTTAACCATCCAGATTCATATAC | 57.986 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
1703 | 1865 | 8.170061 | CCCCTTTTAACCATCCAGATTCATATA | 58.830 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
1704 | 1866 | 7.012607 | CCCCTTTTAACCATCCAGATTCATAT | 58.987 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
1705 | 1867 | 6.161348 | TCCCCTTTTAACCATCCAGATTCATA | 59.839 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
1706 | 1868 | 5.043432 | TCCCCTTTTAACCATCCAGATTCAT | 60.043 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1707 | 1869 | 4.293634 | TCCCCTTTTAACCATCCAGATTCA | 59.706 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1708 | 1870 | 4.867086 | TCCCCTTTTAACCATCCAGATTC | 58.133 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
1709 | 1871 | 4.965283 | TCCCCTTTTAACCATCCAGATT | 57.035 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
1710 | 1872 | 4.965283 | TTCCCCTTTTAACCATCCAGAT | 57.035 | 40.909 | 0.00 | 0.00 | 0.00 | 2.90 |
1711 | 1873 | 4.412843 | GTTTCCCCTTTTAACCATCCAGA | 58.587 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
1712 | 1874 | 3.192633 | CGTTTCCCCTTTTAACCATCCAG | 59.807 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1713 | 1875 | 3.158676 | CGTTTCCCCTTTTAACCATCCA | 58.841 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1714 | 1876 | 3.423749 | TCGTTTCCCCTTTTAACCATCC | 58.576 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
1715 | 1877 | 4.521639 | AGTTCGTTTCCCCTTTTAACCATC | 59.478 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1716 | 1878 | 4.476297 | AGTTCGTTTCCCCTTTTAACCAT | 58.524 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
1717 | 1879 | 3.900971 | AGTTCGTTTCCCCTTTTAACCA | 58.099 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
1718 | 1880 | 5.065914 | ACTAGTTCGTTTCCCCTTTTAACC | 58.934 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
1719 | 1881 | 7.821359 | AGATACTAGTTCGTTTCCCCTTTTAAC | 59.179 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
1720 | 1882 | 7.910584 | AGATACTAGTTCGTTTCCCCTTTTAA | 58.089 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
1721 | 1883 | 7.486407 | AGATACTAGTTCGTTTCCCCTTTTA | 57.514 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1722 | 1884 | 6.370186 | AGATACTAGTTCGTTTCCCCTTTT | 57.630 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
1723 | 1885 | 6.127225 | GGTAGATACTAGTTCGTTTCCCCTTT | 60.127 | 42.308 | 0.00 | 0.00 | 0.00 | 3.11 |
1724 | 1886 | 5.362143 | GGTAGATACTAGTTCGTTTCCCCTT | 59.638 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1725 | 1887 | 4.892345 | GGTAGATACTAGTTCGTTTCCCCT | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
1726 | 1888 | 4.892345 | AGGTAGATACTAGTTCGTTTCCCC | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 4.81 |
1727 | 1889 | 6.096001 | TGAAGGTAGATACTAGTTCGTTTCCC | 59.904 | 42.308 | 0.00 | 0.00 | 0.00 | 3.97 |
1728 | 1890 | 7.093322 | TGAAGGTAGATACTAGTTCGTTTCC | 57.907 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
1729 | 1891 | 8.976986 | TTTGAAGGTAGATACTAGTTCGTTTC | 57.023 | 34.615 | 0.00 | 4.52 | 0.00 | 2.78 |
1730 | 1892 | 9.768662 | TTTTTGAAGGTAGATACTAGTTCGTTT | 57.231 | 29.630 | 0.00 | 0.00 | 0.00 | 3.60 |
1731 | 1893 | 9.939802 | ATTTTTGAAGGTAGATACTAGTTCGTT | 57.060 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
1732 | 1894 | 9.583765 | GATTTTTGAAGGTAGATACTAGTTCGT | 57.416 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1733 | 1895 | 8.744011 | CGATTTTTGAAGGTAGATACTAGTTCG | 58.256 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
1734 | 1896 | 9.798994 | TCGATTTTTGAAGGTAGATACTAGTTC | 57.201 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1736 | 1898 | 9.751542 | CATCGATTTTTGAAGGTAGATACTAGT | 57.248 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1737 | 1899 | 9.967346 | TCATCGATTTTTGAAGGTAGATACTAG | 57.033 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1738 | 1900 | 9.745880 | GTCATCGATTTTTGAAGGTAGATACTA | 57.254 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1739 | 1901 | 8.478877 | AGTCATCGATTTTTGAAGGTAGATACT | 58.521 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
1751 | 1913 | 9.087424 | TCTACAGAACATAGTCATCGATTTTTG | 57.913 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
1780 | 1942 | 9.236006 | CCTTTTAACCATCCAGATTCATATAGG | 57.764 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1781 | 1943 | 9.236006 | CCCTTTTAACCATCCAGATTCATATAG | 57.764 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
1782 | 1944 | 8.170061 | CCCCTTTTAACCATCCAGATTCATATA | 58.830 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
1783 | 1945 | 7.012607 | CCCCTTTTAACCATCCAGATTCATAT | 58.987 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
1784 | 1946 | 6.161348 | TCCCCTTTTAACCATCCAGATTCATA | 59.839 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
1812 | 1974 | 6.499172 | TCATGTTAACTTTTGCAATCGTTCA | 58.501 | 32.000 | 14.72 | 9.82 | 0.00 | 3.18 |
1875 | 2142 | 2.231721 | GAGAGGTCCGGTTATAGATGCC | 59.768 | 54.545 | 0.00 | 0.00 | 0.00 | 4.40 |
1883 | 2150 | 1.270550 | GACGTTTGAGAGGTCCGGTTA | 59.729 | 52.381 | 0.00 | 0.00 | 37.22 | 2.85 |
1911 | 2191 | 1.507141 | CCGGACAGTGACCAAGTTGC | 61.507 | 60.000 | 12.19 | 0.00 | 0.00 | 4.17 |
1947 | 2227 | 2.418060 | GGTTGTGGTTGGGTGACTTTTG | 60.418 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1991 | 2271 | 7.237982 | TGGGTATAGGGATTTGTGGATTTATG | 58.762 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
1996 | 2276 | 4.731929 | AGTTGGGTATAGGGATTTGTGGAT | 59.268 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2013 | 2293 | 2.505407 | TCCTCCACACATATGAGTTGGG | 59.495 | 50.000 | 10.38 | 6.52 | 0.00 | 4.12 |
2028 | 2308 | 1.977854 | CCGAACATCCCATATCCTCCA | 59.022 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2049 | 2330 | 1.344438 | CGCATCCTACATGAAGGGCTA | 59.656 | 52.381 | 0.00 | 0.00 | 37.24 | 3.93 |
2056 | 2338 | 3.141409 | TAGGCCGCATCCTACATGA | 57.859 | 52.632 | 0.00 | 0.00 | 37.66 | 3.07 |
2080 | 2362 | 7.931578 | TGAAGAAAGAAAGACAAAAGTGGTA | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 3.25 |
2086 | 2368 | 5.128499 | TGGGCATGAAGAAAGAAAGACAAAA | 59.872 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2090 | 2372 | 4.460382 | TGATGGGCATGAAGAAAGAAAGAC | 59.540 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2091 | 2373 | 4.665451 | TGATGGGCATGAAGAAAGAAAGA | 58.335 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2092 | 2374 | 5.395682 | TTGATGGGCATGAAGAAAGAAAG | 57.604 | 39.130 | 0.00 | 0.00 | 0.00 | 2.62 |
2093 | 2375 | 5.481122 | TGATTGATGGGCATGAAGAAAGAAA | 59.519 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2096 | 2378 | 4.994907 | TGATTGATGGGCATGAAGAAAG | 57.005 | 40.909 | 0.00 | 0.00 | 0.00 | 2.62 |
2097 | 2379 | 6.517697 | GCATATGATTGATGGGCATGAAGAAA | 60.518 | 38.462 | 6.97 | 0.00 | 0.00 | 2.52 |
2098 | 2380 | 5.047590 | GCATATGATTGATGGGCATGAAGAA | 60.048 | 40.000 | 6.97 | 0.00 | 0.00 | 2.52 |
2139 | 2422 | 3.246167 | ACCATCTCCTCTACAACCTTCCT | 60.246 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
2146 | 2429 | 3.877559 | CATGCAACCATCTCCTCTACAA | 58.122 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
2152 | 2435 | 1.399714 | CATGCATGCAACCATCTCCT | 58.600 | 50.000 | 26.68 | 0.80 | 0.00 | 3.69 |
2174 | 2457 | 5.050634 | CGTGTCCGTTTTGAGTCTTCATTTA | 60.051 | 40.000 | 0.00 | 0.00 | 32.27 | 1.40 |
2212 | 2495 | 3.501396 | CATCCGTGGATGTGCACC | 58.499 | 61.111 | 18.76 | 0.00 | 44.93 | 5.01 |
2266 | 2550 | 3.826729 | GCCAACCCAAAGATTGTAAGAGT | 59.173 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
2276 | 2560 | 0.850100 | TCTTGAGGCCAACCCAAAGA | 59.150 | 50.000 | 5.01 | 1.51 | 36.66 | 2.52 |
2285 | 2569 | 2.224159 | GGTGGACCTCTTGAGGCCA | 61.224 | 63.158 | 20.80 | 20.80 | 34.41 | 5.36 |
2318 | 2602 | 8.085296 | ACGCCTTAATGTGTTTAATTTCATCAA | 58.915 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2320 | 2604 | 7.009174 | CCACGCCTTAATGTGTTTAATTTCATC | 59.991 | 37.037 | 0.00 | 0.00 | 34.28 | 2.92 |
2330 | 2614 | 3.688694 | TCTACCACGCCTTAATGTGTT | 57.311 | 42.857 | 0.00 | 0.00 | 34.28 | 3.32 |
2331 | 2615 | 3.688694 | TTCTACCACGCCTTAATGTGT | 57.311 | 42.857 | 0.00 | 0.00 | 34.28 | 3.72 |
2332 | 2616 | 3.374058 | CCTTTCTACCACGCCTTAATGTG | 59.626 | 47.826 | 0.00 | 0.00 | 35.87 | 3.21 |
2333 | 2617 | 3.008704 | ACCTTTCTACCACGCCTTAATGT | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
2334 | 2618 | 3.374058 | CACCTTTCTACCACGCCTTAATG | 59.626 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
2335 | 2619 | 3.606687 | CACCTTTCTACCACGCCTTAAT | 58.393 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
2336 | 2620 | 2.289819 | CCACCTTTCTACCACGCCTTAA | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2337 | 2621 | 1.276989 | CCACCTTTCTACCACGCCTTA | 59.723 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
2338 | 2622 | 0.036306 | CCACCTTTCTACCACGCCTT | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2339 | 2623 | 1.677552 | CCACCTTTCTACCACGCCT | 59.322 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
2340 | 2624 | 2.038837 | GCCACCTTTCTACCACGCC | 61.039 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
2341 | 2625 | 2.038837 | GGCCACCTTTCTACCACGC | 61.039 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
2342 | 2626 | 0.250553 | TTGGCCACCTTTCTACCACG | 60.251 | 55.000 | 3.88 | 0.00 | 0.00 | 4.94 |
2343 | 2627 | 1.244816 | GTTGGCCACCTTTCTACCAC | 58.755 | 55.000 | 3.88 | 0.00 | 0.00 | 4.16 |
2344 | 2628 | 0.111639 | GGTTGGCCACCTTTCTACCA | 59.888 | 55.000 | 3.88 | 0.00 | 43.29 | 3.25 |
2345 | 2629 | 2.957060 | GGTTGGCCACCTTTCTACC | 58.043 | 57.895 | 3.88 | 4.44 | 43.29 | 3.18 |
2354 | 2638 | 0.322456 | TGACATAGCTGGTTGGCCAC | 60.322 | 55.000 | 3.88 | 0.00 | 40.46 | 5.01 |
2355 | 2639 | 0.322456 | GTGACATAGCTGGTTGGCCA | 60.322 | 55.000 | 0.00 | 0.00 | 43.73 | 5.36 |
2356 | 2640 | 1.369091 | CGTGACATAGCTGGTTGGCC | 61.369 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2357 | 2641 | 0.673644 | ACGTGACATAGCTGGTTGGC | 60.674 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2358 | 2642 | 1.078709 | CACGTGACATAGCTGGTTGG | 58.921 | 55.000 | 10.90 | 0.00 | 0.00 | 3.77 |
2359 | 2643 | 1.078709 | CCACGTGACATAGCTGGTTG | 58.921 | 55.000 | 19.30 | 0.00 | 0.00 | 3.77 |
2360 | 2644 | 0.673644 | GCCACGTGACATAGCTGGTT | 60.674 | 55.000 | 19.30 | 0.00 | 0.00 | 3.67 |
2361 | 2645 | 1.079127 | GCCACGTGACATAGCTGGT | 60.079 | 57.895 | 19.30 | 0.00 | 0.00 | 4.00 |
2362 | 2646 | 2.167219 | CGCCACGTGACATAGCTGG | 61.167 | 63.158 | 19.30 | 0.00 | 0.00 | 4.85 |
2363 | 2647 | 2.802667 | GCGCCACGTGACATAGCTG | 61.803 | 63.158 | 19.30 | 8.85 | 0.00 | 4.24 |
2364 | 2648 | 2.509336 | GCGCCACGTGACATAGCT | 60.509 | 61.111 | 19.30 | 0.00 | 0.00 | 3.32 |
2365 | 2649 | 0.874175 | TATGCGCCACGTGACATAGC | 60.874 | 55.000 | 19.30 | 14.44 | 0.00 | 2.97 |
2366 | 2650 | 0.852777 | GTATGCGCCACGTGACATAG | 59.147 | 55.000 | 19.30 | 0.00 | 0.00 | 2.23 |
2367 | 2651 | 0.458260 | AGTATGCGCCACGTGACATA | 59.542 | 50.000 | 19.30 | 17.69 | 0.00 | 2.29 |
2368 | 2652 | 1.083806 | CAGTATGCGCCACGTGACAT | 61.084 | 55.000 | 19.30 | 18.69 | 0.00 | 3.06 |
2369 | 2653 | 1.736282 | CAGTATGCGCCACGTGACA | 60.736 | 57.895 | 19.30 | 12.68 | 0.00 | 3.58 |
2370 | 2654 | 2.452813 | CCAGTATGCGCCACGTGAC | 61.453 | 63.158 | 19.30 | 3.81 | 31.97 | 3.67 |
2371 | 2655 | 2.125713 | CCAGTATGCGCCACGTGA | 60.126 | 61.111 | 19.30 | 0.00 | 31.97 | 4.35 |
2372 | 2656 | 2.032634 | AACCAGTATGCGCCACGTG | 61.033 | 57.895 | 9.08 | 9.08 | 31.97 | 4.49 |
2373 | 2657 | 2.032634 | CAACCAGTATGCGCCACGT | 61.033 | 57.895 | 4.18 | 0.00 | 31.97 | 4.49 |
2374 | 2658 | 2.749865 | CCAACCAGTATGCGCCACG | 61.750 | 63.158 | 4.18 | 0.00 | 31.97 | 4.94 |
2375 | 2659 | 3.051392 | GCCAACCAGTATGCGCCAC | 62.051 | 63.158 | 4.18 | 2.39 | 31.97 | 5.01 |
2376 | 2660 | 2.749839 | GCCAACCAGTATGCGCCA | 60.750 | 61.111 | 4.18 | 0.00 | 31.97 | 5.69 |
2377 | 2661 | 3.518068 | GGCCAACCAGTATGCGCC | 61.518 | 66.667 | 4.18 | 0.00 | 35.26 | 6.53 |
2378 | 2662 | 3.876198 | CGGCCAACCAGTATGCGC | 61.876 | 66.667 | 2.24 | 0.00 | 34.57 | 6.09 |
2379 | 2663 | 2.435938 | ACGGCCAACCAGTATGCG | 60.436 | 61.111 | 2.24 | 0.00 | 34.57 | 4.73 |
2380 | 2664 | 2.406616 | CCACGGCCAACCAGTATGC | 61.407 | 63.158 | 2.24 | 0.00 | 34.57 | 3.14 |
2381 | 2665 | 1.002624 | ACCACGGCCAACCAGTATG | 60.003 | 57.895 | 2.24 | 0.00 | 34.57 | 2.39 |
2382 | 2666 | 1.002624 | CACCACGGCCAACCAGTAT | 60.003 | 57.895 | 2.24 | 0.00 | 34.57 | 2.12 |
2383 | 2667 | 1.697082 | TTCACCACGGCCAACCAGTA | 61.697 | 55.000 | 2.24 | 0.00 | 34.57 | 2.74 |
2384 | 2668 | 2.559922 | TTTCACCACGGCCAACCAGT | 62.560 | 55.000 | 2.24 | 0.00 | 34.57 | 4.00 |
2385 | 2669 | 1.388065 | TTTTCACCACGGCCAACCAG | 61.388 | 55.000 | 2.24 | 0.00 | 34.57 | 4.00 |
2386 | 2670 | 0.970937 | TTTTTCACCACGGCCAACCA | 60.971 | 50.000 | 2.24 | 0.00 | 34.57 | 3.67 |
2387 | 2671 | 0.249280 | CTTTTTCACCACGGCCAACC | 60.249 | 55.000 | 2.24 | 0.00 | 0.00 | 3.77 |
2388 | 2672 | 0.458260 | ACTTTTTCACCACGGCCAAC | 59.542 | 50.000 | 2.24 | 0.00 | 0.00 | 3.77 |
2389 | 2673 | 1.187087 | AACTTTTTCACCACGGCCAA | 58.813 | 45.000 | 2.24 | 0.00 | 0.00 | 4.52 |
2390 | 2674 | 2.889200 | AACTTTTTCACCACGGCCA | 58.111 | 47.368 | 2.24 | 0.00 | 0.00 | 5.36 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.