Multiple sequence alignment - TraesCS3B01G191700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G191700 chr3B 100.000 4037 0 0 1 4037 204849407 204845371 0.000000e+00 7456
1 TraesCS3B01G191700 chr3B 87.465 710 79 8 1163 1865 221912515 221913221 0.000000e+00 809
2 TraesCS3B01G191700 chr3D 90.412 2211 121 34 1 2180 142999272 142997122 0.000000e+00 2824
3 TraesCS3B01G191700 chr3D 87.363 728 82 5 1145 1865 360691508 360692232 0.000000e+00 826
4 TraesCS3B01G191700 chr3D 87.430 716 81 8 1162 1871 147335984 147335272 0.000000e+00 815
5 TraesCS3B01G191700 chr3D 87.642 704 80 4 1163 1862 141410645 141411345 0.000000e+00 811
6 TraesCS3B01G191700 chr3D 87.447 709 82 6 1162 1866 149205118 149205823 0.000000e+00 809
7 TraesCS3B01G191700 chr3D 93.049 446 27 2 3592 4036 602047880 602048322 0.000000e+00 649
8 TraesCS3B01G191700 chr3D 92.551 443 32 1 3595 4036 336808863 336809305 5.690000e-178 634
9 TraesCS3B01G191700 chr3D 90.374 187 11 4 3411 3596 142878934 142878754 5.210000e-59 239
10 TraesCS3B01G191700 chr3A 90.028 2116 120 36 135 2206 162753148 162751080 0.000000e+00 2654
11 TraesCS3B01G191700 chr3A 88.152 709 73 7 1163 1865 159832044 159832747 0.000000e+00 833
12 TraesCS3B01G191700 chr3A 87.324 710 83 5 1163 1868 166923477 166924183 0.000000e+00 806
13 TraesCS3B01G191700 chr3A 89.715 632 56 4 2968 3596 162751069 162750444 0.000000e+00 798
14 TraesCS3B01G191700 chr3A 90.076 131 5 5 1 129 162753394 162753270 3.230000e-36 163
15 TraesCS3B01G191700 chr5D 93.096 449 30 1 3588 4036 267620246 267620693 0.000000e+00 656
16 TraesCS3B01G191700 chr5D 92.809 445 26 3 3593 4036 529804434 529803995 1.220000e-179 640
17 TraesCS3B01G191700 chr5D 92.428 449 26 2 3594 4036 559113383 559113829 5.690000e-178 634
18 TraesCS3B01G191700 chr4B 93.018 444 31 0 3594 4037 62977549 62977106 0.000000e+00 649
19 TraesCS3B01G191700 chr1D 93.002 443 31 0 3594 4036 470206818 470207260 0.000000e+00 647
20 TraesCS3B01G191700 chr1D 77.649 604 104 23 2218 2815 348037011 348037589 5.000000e-89 339
21 TraesCS3B01G191700 chr7D 92.634 448 30 1 3593 4037 78290549 78290996 3.400000e-180 641
22 TraesCS3B01G191700 chr7D 92.760 442 28 3 3596 4036 458159244 458159682 1.580000e-178 636
23 TraesCS3B01G191700 chr2D 78.804 736 129 17 2236 2961 73327736 73327018 1.700000e-128 470


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G191700 chr3B 204845371 204849407 4036 True 7456 7456 100.000000 1 4037 1 chr3B.!!$R1 4036
1 TraesCS3B01G191700 chr3B 221912515 221913221 706 False 809 809 87.465000 1163 1865 1 chr3B.!!$F1 702
2 TraesCS3B01G191700 chr3D 142997122 142999272 2150 True 2824 2824 90.412000 1 2180 1 chr3D.!!$R2 2179
3 TraesCS3B01G191700 chr3D 360691508 360692232 724 False 826 826 87.363000 1145 1865 1 chr3D.!!$F4 720
4 TraesCS3B01G191700 chr3D 147335272 147335984 712 True 815 815 87.430000 1162 1871 1 chr3D.!!$R3 709
5 TraesCS3B01G191700 chr3D 141410645 141411345 700 False 811 811 87.642000 1163 1862 1 chr3D.!!$F1 699
6 TraesCS3B01G191700 chr3D 149205118 149205823 705 False 809 809 87.447000 1162 1866 1 chr3D.!!$F2 704
7 TraesCS3B01G191700 chr3A 162750444 162753394 2950 True 1205 2654 89.939667 1 3596 3 chr3A.!!$R1 3595
8 TraesCS3B01G191700 chr3A 159832044 159832747 703 False 833 833 88.152000 1163 1865 1 chr3A.!!$F1 702
9 TraesCS3B01G191700 chr3A 166923477 166924183 706 False 806 806 87.324000 1163 1868 1 chr3A.!!$F2 705
10 TraesCS3B01G191700 chr1D 348037011 348037589 578 False 339 339 77.649000 2218 2815 1 chr1D.!!$F1 597
11 TraesCS3B01G191700 chr2D 73327018 73327736 718 True 470 470 78.804000 2236 2961 1 chr2D.!!$R1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.030369 CCTCTACGGCGTCGCTTTAT 59.970 55.0 19.21 2.86 40.63 1.40 F
1037 1174 0.242825 GCCGCCCTGGTTTTTACTTC 59.757 55.0 0.00 0.00 41.21 3.01 F
1816 1986 0.394352 CCGCCTCACATAAGCCCTTT 60.394 55.0 0.00 0.00 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 1645 1.134788 CAGTCTCCCCATGTAACGACC 60.135 57.143 0.0 0.0 0.00 4.79 R
2360 2551 0.185901 AGCATGGGTTTGTGGTCTGT 59.814 50.000 0.0 0.0 0.00 3.41 R
3698 3895 0.179119 ACTCCTTATACCGCACACGC 60.179 55.000 0.0 0.0 38.22 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.074412 AGAACATGTTTTGCCTCTACGG 58.926 45.455 13.36 0.00 0.00 4.02
55 56 1.430632 CCTCTACGGCGTCGCTTTA 59.569 57.895 19.21 7.60 40.63 1.85
56 57 0.030369 CCTCTACGGCGTCGCTTTAT 59.970 55.000 19.21 2.86 40.63 1.40
58 59 2.190981 CTCTACGGCGTCGCTTTATTT 58.809 47.619 19.21 0.00 40.63 1.40
59 60 3.365832 CTCTACGGCGTCGCTTTATTTA 58.634 45.455 19.21 0.00 40.63 1.40
91 92 1.197721 GTGGGAAGCAGAAACACGATG 59.802 52.381 0.00 0.00 0.00 3.84
181 300 5.153950 ACTACTCCAGAAGGACAATTGAC 57.846 43.478 13.59 5.81 39.61 3.18
182 301 3.045601 ACTCCAGAAGGACAATTGACG 57.954 47.619 13.59 0.00 39.61 4.35
314 433 4.129737 GCTCAGCGCCGACCTACA 62.130 66.667 2.29 0.00 0.00 2.74
325 444 3.120649 CGCCGACCTACAAAGAGAAAAAG 60.121 47.826 0.00 0.00 0.00 2.27
354 473 2.987149 GAGACACACTCACGTTATGGTG 59.013 50.000 5.83 5.83 44.36 4.17
355 474 2.066262 GACACACTCACGTTATGGTGG 58.934 52.381 10.69 4.19 38.46 4.61
356 475 1.414919 ACACACTCACGTTATGGTGGT 59.585 47.619 10.69 4.64 38.46 4.16
357 476 1.798223 CACACTCACGTTATGGTGGTG 59.202 52.381 10.30 10.59 41.12 4.17
358 477 1.689813 ACACTCACGTTATGGTGGTGA 59.310 47.619 15.92 4.33 39.41 4.02
359 478 2.066262 CACTCACGTTATGGTGGTGAC 58.934 52.381 0.00 0.00 39.41 3.67
360 479 1.689813 ACTCACGTTATGGTGGTGACA 59.310 47.619 0.00 0.00 38.46 3.58
361 480 2.103432 ACTCACGTTATGGTGGTGACAA 59.897 45.455 0.00 0.00 46.06 3.18
362 481 3.135225 CTCACGTTATGGTGGTGACAAA 58.865 45.455 0.00 0.00 46.06 2.83
365 484 3.314080 CACGTTATGGTGGTGACAAAAGT 59.686 43.478 0.00 0.00 46.06 2.66
369 488 1.658994 TGGTGGTGACAAAAGTCGAC 58.341 50.000 7.70 7.70 46.06 4.20
445 564 2.060980 GCATGAGGGTCGAGGGAGT 61.061 63.158 0.00 0.00 0.00 3.85
628 753 2.359975 CCTCCAGCCGGTTGTTCC 60.360 66.667 17.69 0.00 0.00 3.62
630 755 1.550130 CCTCCAGCCGGTTGTTCCTA 61.550 60.000 17.69 0.00 0.00 2.94
633 758 1.005394 CAGCCGGTTGTTCCTACGT 60.005 57.895 10.61 0.00 0.00 3.57
638 763 1.408474 CGGTTGTTCCTACGTAGCGC 61.408 60.000 17.41 0.00 0.00 5.92
642 767 1.252904 TGTTCCTACGTAGCGCCCTT 61.253 55.000 17.41 0.00 0.00 3.95
675 801 0.875059 GCGAACTGGGAAGTTGGAAG 59.125 55.000 5.00 0.00 30.62 3.46
676 802 0.875059 CGAACTGGGAAGTTGGAAGC 59.125 55.000 0.00 0.00 30.62 3.86
678 804 2.306847 GAACTGGGAAGTTGGAAGCAA 58.693 47.619 0.00 0.00 31.35 3.91
745 873 2.664851 CGAACTGCCAGCACCGAA 60.665 61.111 0.00 0.00 0.00 4.30
852 988 3.799432 ACCACAGCCTTTGGTATGTTA 57.201 42.857 0.00 0.00 46.01 2.41
853 989 4.316025 ACCACAGCCTTTGGTATGTTAT 57.684 40.909 0.00 0.00 46.01 1.89
854 990 5.444744 ACCACAGCCTTTGGTATGTTATA 57.555 39.130 0.00 0.00 46.01 0.98
857 993 5.278463 CCACAGCCTTTGGTATGTTATATGC 60.278 44.000 0.00 0.00 0.00 3.14
879 1015 4.464112 CTTAACTGTTCTTACCAAAGCGC 58.536 43.478 0.00 0.00 32.36 5.92
892 1028 4.198625 AGCGCAGAAGCTCATCAC 57.801 55.556 11.47 0.00 45.67 3.06
935 1071 4.408821 GATCCGGGTGTGCCTGCA 62.409 66.667 0.00 0.00 39.86 4.41
948 1084 1.803922 CCTGCACGCACGATTACGA 60.804 57.895 0.00 0.00 42.66 3.43
949 1085 1.348538 CCTGCACGCACGATTACGAA 61.349 55.000 0.00 0.00 42.66 3.85
950 1086 0.436913 CTGCACGCACGATTACGAAA 59.563 50.000 0.00 0.00 42.66 3.46
951 1087 0.859882 TGCACGCACGATTACGAAAA 59.140 45.000 0.00 0.00 42.66 2.29
952 1088 1.235695 GCACGCACGATTACGAAAAC 58.764 50.000 0.00 0.00 42.66 2.43
986 1122 4.501071 GATTTCGCCTCCTACAGTGTTTA 58.499 43.478 0.00 0.00 0.00 2.01
1032 1169 2.282887 ATCGCCGCCCTGGTTTTT 60.283 55.556 0.00 0.00 41.21 1.94
1033 1170 1.001887 ATCGCCGCCCTGGTTTTTA 60.002 52.632 0.00 0.00 41.21 1.52
1037 1174 0.242825 GCCGCCCTGGTTTTTACTTC 59.757 55.000 0.00 0.00 41.21 3.01
1039 1176 0.519961 CGCCCTGGTTTTTACTTCCG 59.480 55.000 0.00 0.00 0.00 4.30
1042 1179 2.167662 CCCTGGTTTTTACTTCCGCAT 58.832 47.619 0.00 0.00 0.00 4.73
1063 1200 5.277538 GCATACTGATTCAATCCCGAGTTTC 60.278 44.000 0.00 0.00 0.00 2.78
1072 1209 2.577593 CCGAGTTTCCCCGGTCTC 59.422 66.667 0.00 0.00 40.78 3.36
1191 1350 5.867716 GCAAGATTTCGACTACTTCTTGGTA 59.132 40.000 16.93 0.00 42.13 3.25
1370 1529 3.399181 GGACCTCACCGGCATCCA 61.399 66.667 0.00 0.00 35.61 3.41
1469 1629 2.514824 GGCAGGGACCAAGCGATC 60.515 66.667 0.00 0.00 0.00 3.69
1525 1685 2.361483 ATTGCCGCACCATGCTCA 60.361 55.556 0.00 0.00 42.25 4.26
1760 1921 2.158900 CGGGGTCAAGATGAGCATTACT 60.159 50.000 11.19 0.00 45.96 2.24
1816 1986 0.394352 CCGCCTCACATAAGCCCTTT 60.394 55.000 0.00 0.00 0.00 3.11
1924 2103 2.781300 GTGCTTCTGCTACTGCGC 59.219 61.111 0.00 0.00 43.34 6.09
1925 2104 2.029288 GTGCTTCTGCTACTGCGCA 61.029 57.895 10.98 10.98 43.34 6.09
1926 2105 2.029288 TGCTTCTGCTACTGCGCAC 61.029 57.895 5.66 0.00 43.34 5.34
1927 2106 1.739562 GCTTCTGCTACTGCGCACT 60.740 57.895 5.66 0.00 43.34 4.40
1928 2107 1.964290 GCTTCTGCTACTGCGCACTG 61.964 60.000 5.66 0.00 43.34 3.66
1929 2108 1.964290 CTTCTGCTACTGCGCACTGC 61.964 60.000 5.66 11.91 43.34 4.40
2131 2311 5.562506 TTGACGAAACAAACCATGTACAA 57.437 34.783 0.00 0.00 42.99 2.41
2204 2387 9.092338 AGAATAGAGCAATCTAGAATCAGACAT 57.908 33.333 0.00 0.00 0.00 3.06
2207 2390 6.690530 AGAGCAATCTAGAATCAGACATAGC 58.309 40.000 0.00 0.00 0.00 2.97
2208 2391 6.494491 AGAGCAATCTAGAATCAGACATAGCT 59.506 38.462 0.00 0.00 0.00 3.32
2209 2392 7.669304 AGAGCAATCTAGAATCAGACATAGCTA 59.331 37.037 0.00 0.00 0.00 3.32
2210 2393 8.365060 AGCAATCTAGAATCAGACATAGCTAT 57.635 34.615 0.00 0.00 0.00 2.97
2211 2394 8.469200 AGCAATCTAGAATCAGACATAGCTATC 58.531 37.037 2.34 0.00 0.00 2.08
2212 2395 7.706179 GCAATCTAGAATCAGACATAGCTATCC 59.294 40.741 2.34 0.00 0.00 2.59
2213 2396 8.970020 CAATCTAGAATCAGACATAGCTATCCT 58.030 37.037 2.34 1.22 0.00 3.24
2214 2397 9.545928 AATCTAGAATCAGACATAGCTATCCTT 57.454 33.333 2.34 0.00 0.00 3.36
2215 2398 8.948401 TCTAGAATCAGACATAGCTATCCTTT 57.052 34.615 2.34 0.00 0.00 3.11
2232 2417 5.385509 TCCTTTAAGAAAAGCAATTCCCG 57.614 39.130 0.00 0.00 40.73 5.14
2247 2432 4.720902 CCGTGCATGGGTCAGCCA 62.721 66.667 17.90 0.00 36.17 4.75
2250 2435 1.597797 CGTGCATGGGTCAGCCATTT 61.598 55.000 5.35 0.00 36.17 2.32
2269 2460 6.678878 CCATTTGATTTAGATGGAGATGCAG 58.321 40.000 0.00 0.00 42.31 4.41
2276 2467 1.202782 AGATGGAGATGCAGGCACATC 60.203 52.381 11.37 11.37 45.62 3.06
2284 2475 4.005487 GATGCAGGCACATCTCTTCTAT 57.995 45.455 11.89 0.00 42.63 1.98
2308 2499 8.727100 ATCTGTATTTCACCCATCTAGTCATA 57.273 34.615 0.00 0.00 0.00 2.15
2349 2540 3.571828 TGGTCTATGCATCTACTCTCTGC 59.428 47.826 0.19 0.00 36.45 4.26
2353 2544 3.681593 ATGCATCTACTCTCTGCCATC 57.318 47.619 0.00 0.00 35.02 3.51
2354 2545 1.690893 TGCATCTACTCTCTGCCATCC 59.309 52.381 0.00 0.00 35.02 3.51
2355 2546 1.336702 GCATCTACTCTCTGCCATCCG 60.337 57.143 0.00 0.00 0.00 4.18
2356 2547 1.271934 CATCTACTCTCTGCCATCCGG 59.728 57.143 0.00 0.00 0.00 5.14
2370 2561 4.263572 CCGGCCCACAGACCACAA 62.264 66.667 0.00 0.00 0.00 3.33
2379 2570 0.185901 ACAGACCACAAACCCATGCT 59.814 50.000 0.00 0.00 0.00 3.79
2389 2580 4.211794 CACAAACCCATGCTTTTTCATGTC 59.788 41.667 0.00 0.00 41.60 3.06
2391 2582 3.947910 ACCCATGCTTTTTCATGTCAG 57.052 42.857 0.00 0.00 41.60 3.51
2395 2586 3.916172 CCATGCTTTTTCATGTCAGTTCG 59.084 43.478 0.00 0.00 41.60 3.95
2409 2600 5.806286 TGTCAGTTCGAAGTTTGAAATCAC 58.194 37.500 7.13 3.81 0.00 3.06
2449 2640 2.817844 AGCCCGATTTAGCTTTCGTTTT 59.182 40.909 0.00 0.00 35.22 2.43
2450 2641 4.004982 AGCCCGATTTAGCTTTCGTTTTA 58.995 39.130 0.00 0.00 35.22 1.52
2451 2642 4.456566 AGCCCGATTTAGCTTTCGTTTTAA 59.543 37.500 0.00 0.00 35.22 1.52
2479 2670 0.603569 TTCCTGCTGACGAGGACTTC 59.396 55.000 0.00 0.00 39.44 3.01
2491 2682 5.074584 ACGAGGACTTCTAAACAAGATCC 57.925 43.478 0.00 0.00 33.05 3.36
2582 2773 5.010516 TGGTAAAACTCCATGAAACATGGTG 59.989 40.000 24.00 23.31 40.06 4.17
2594 2785 7.309377 CCATGAAACATGGTGTGAAACTCTATT 60.309 37.037 19.00 0.00 38.04 1.73
2638 2829 8.899427 TTTTCATGGCAATTTGTTTCTATTGA 57.101 26.923 0.00 0.00 34.44 2.57
2640 2831 7.465353 TCATGGCAATTTGTTTCTATTGAGA 57.535 32.000 0.00 0.00 34.44 3.27
2641 2832 7.894708 TCATGGCAATTTGTTTCTATTGAGAA 58.105 30.769 0.00 0.00 40.04 2.87
2654 2845 7.451501 TTCTATTGAGAAACACAATGATGCA 57.548 32.000 0.00 0.00 38.80 3.96
2656 2847 8.058667 TCTATTGAGAAACACAATGATGCAAT 57.941 30.769 0.00 0.00 38.25 3.56
2657 2848 8.186163 TCTATTGAGAAACACAATGATGCAATC 58.814 33.333 0.00 0.00 45.83 2.67
2659 2850 7.451501 TTGAGAAACACAATGATGCAATCTA 57.548 32.000 0.00 0.00 45.81 1.98
2662 2853 7.040548 TGAGAAACACAATGATGCAATCTACAA 60.041 33.333 0.00 0.00 45.81 2.41
2665 2856 6.519679 ACACAATGATGCAATCTACAACAT 57.480 33.333 0.00 0.00 45.81 2.71
2666 2857 6.927416 ACACAATGATGCAATCTACAACATT 58.073 32.000 0.00 0.00 45.81 2.71
2754 2946 8.974060 TGTTTAAAACATCTCTTAACAGGACT 57.026 30.769 0.00 0.00 36.25 3.85
2765 2957 8.603898 TCTCTTAACAGGACTCCAAATATGTA 57.396 34.615 0.00 0.00 0.00 2.29
2770 2962 9.575868 TTAACAGGACTCCAAATATGTAAACAA 57.424 29.630 0.00 0.00 0.00 2.83
2772 2964 8.650143 ACAGGACTCCAAATATGTAAACAAAT 57.350 30.769 0.00 0.00 0.00 2.32
2777 2969 9.994432 GACTCCAAATATGTAAACAAATCAGAG 57.006 33.333 0.00 0.00 0.00 3.35
2799 2991 9.807386 CAGAGATCAAAATTTTCATTCAAAAGC 57.193 29.630 0.00 0.00 37.40 3.51
2803 2995 9.731519 GATCAAAATTTTCATTCAAAAGCTACG 57.268 29.630 0.00 0.00 37.40 3.51
2827 3019 7.063662 ACGTGGTTTTAAAATTTTGGACTCAAC 59.936 33.333 13.76 6.85 31.78 3.18
2841 3033 8.698973 TTTGGACTCAACTTAAAATGTATGGA 57.301 30.769 0.00 0.00 31.78 3.41
2863 3055 9.853177 ATGGATTAATACGAGGAAAGAAAGAAT 57.147 29.630 0.00 0.00 0.00 2.40
2870 3062 5.725362 ACGAGGAAAGAAAGAATCTAGGTG 58.275 41.667 0.00 0.00 37.42 4.00
2884 3076 0.030501 TAGGTGGGGTCATAGGGTGG 60.031 60.000 0.00 0.00 0.00 4.61
2885 3077 1.618447 GGTGGGGTCATAGGGTGGT 60.618 63.158 0.00 0.00 0.00 4.16
2888 3080 1.204786 TGGGGTCATAGGGTGGTGTG 61.205 60.000 0.00 0.00 0.00 3.82
2890 3082 1.213296 GGGTCATAGGGTGGTGTGAT 58.787 55.000 0.00 0.00 0.00 3.06
2892 3084 2.775384 GGGTCATAGGGTGGTGTGATTA 59.225 50.000 0.00 0.00 0.00 1.75
2893 3085 3.394606 GGGTCATAGGGTGGTGTGATTAT 59.605 47.826 0.00 0.00 0.00 1.28
2894 3086 4.505039 GGGTCATAGGGTGGTGTGATTATC 60.505 50.000 0.00 0.00 0.00 1.75
2896 3088 5.221925 GGTCATAGGGTGGTGTGATTATCAT 60.222 44.000 0.00 0.00 0.00 2.45
2897 3089 6.013725 GGTCATAGGGTGGTGTGATTATCATA 60.014 42.308 0.00 0.00 0.00 2.15
2898 3090 7.099764 GTCATAGGGTGGTGTGATTATCATAG 58.900 42.308 0.00 0.00 0.00 2.23
2910 3103 9.847706 GTGTGATTATCATAGATAGTACAGTGG 57.152 37.037 0.00 0.00 0.00 4.00
2912 3105 7.976734 GTGATTATCATAGATAGTACAGTGGGC 59.023 40.741 0.00 0.00 0.00 5.36
2913 3106 7.673926 TGATTATCATAGATAGTACAGTGGGCA 59.326 37.037 0.00 0.00 0.00 5.36
2914 3107 5.730296 ATCATAGATAGTACAGTGGGCAC 57.270 43.478 0.00 0.00 0.00 5.01
2915 3108 4.804597 TCATAGATAGTACAGTGGGCACT 58.195 43.478 0.00 0.00 43.61 4.40
2916 3109 4.827835 TCATAGATAGTACAGTGGGCACTC 59.172 45.833 0.00 0.00 40.20 3.51
2930 3124 1.107538 GCACTCTGCATGCATGGGAT 61.108 55.000 27.34 2.39 44.26 3.85
2962 3156 4.015872 TGGTAGAAAAACCATTCTCGCT 57.984 40.909 0.00 0.00 44.68 4.93
2965 3159 5.815740 TGGTAGAAAAACCATTCTCGCTATC 59.184 40.000 0.00 0.00 44.68 2.08
2966 3160 6.049790 GGTAGAAAAACCATTCTCGCTATCT 58.950 40.000 0.00 0.00 40.13 1.98
2974 3168 3.366374 CCATTCTCGCTATCTGTCGCATA 60.366 47.826 0.00 0.00 0.00 3.14
2978 3172 2.843063 CTCGCTATCTGTCGCATATTCG 59.157 50.000 0.00 0.00 0.00 3.34
2982 3176 4.085055 CGCTATCTGTCGCATATTCGTTTT 60.085 41.667 0.00 0.00 0.00 2.43
2990 3184 6.270064 TGTCGCATATTCGTTTTCATAGAGA 58.730 36.000 0.00 0.00 0.00 3.10
3013 3207 8.908786 AGATCTTCAAAAGTGTTAGATGAACA 57.091 30.769 0.00 0.00 46.03 3.18
3025 3219 5.769662 TGTTAGATGAACAATGAAGCCACTT 59.230 36.000 0.00 0.00 45.23 3.16
3026 3220 4.778534 AGATGAACAATGAAGCCACTTG 57.221 40.909 0.00 0.00 0.00 3.16
3027 3221 4.147321 AGATGAACAATGAAGCCACTTGT 58.853 39.130 0.00 0.00 34.71 3.16
3028 3222 4.586001 AGATGAACAATGAAGCCACTTGTT 59.414 37.500 0.00 0.00 43.68 2.83
3029 3223 4.734398 TGAACAATGAAGCCACTTGTTT 57.266 36.364 1.90 0.00 41.72 2.83
3102 3296 6.902341 TCTTAGTTCAACATCAACAAGCATC 58.098 36.000 0.00 0.00 0.00 3.91
3139 3333 8.726988 CCTTTATTAATTTTGTCTGGACGAGAA 58.273 33.333 0.00 0.00 30.26 2.87
3143 3337 7.884816 TTAATTTTGTCTGGACGAGAACTAG 57.115 36.000 0.00 0.00 30.26 2.57
3145 3339 3.917329 TTGTCTGGACGAGAACTAGTG 57.083 47.619 0.00 0.00 30.26 2.74
3151 3345 1.402613 GGACGAGAACTAGTGGAGCTC 59.597 57.143 4.71 4.71 0.00 4.09
3155 3349 3.129638 ACGAGAACTAGTGGAGCTCATTC 59.870 47.826 17.19 8.69 0.00 2.67
3156 3350 3.129462 CGAGAACTAGTGGAGCTCATTCA 59.871 47.826 17.19 0.94 0.00 2.57
3159 3353 4.100808 AGAACTAGTGGAGCTCATTCATCC 59.899 45.833 17.19 0.00 0.00 3.51
3163 3357 1.599240 GGAGCTCATTCATCCGGCC 60.599 63.158 17.19 0.00 0.00 6.13
3168 3362 1.816961 GCTCATTCATCCGGCCTTCAT 60.817 52.381 0.00 0.00 0.00 2.57
3179 3373 4.885426 CCTTCATAGGCGGCATGT 57.115 55.556 13.08 0.00 33.99 3.21
3233 3427 2.124695 GAGGGGTTCCATCGTGGC 60.125 66.667 0.00 0.00 37.47 5.01
3268 3465 2.099141 AACATGTGTCATGTCGGAGG 57.901 50.000 14.36 0.00 0.00 4.30
3304 3501 3.004839 GGTTTCTTTGTTGGAGGCTCTTC 59.995 47.826 15.23 5.89 0.00 2.87
3317 3514 1.855360 GGCTCTTCGATTAGTTCAGCG 59.145 52.381 0.00 0.00 0.00 5.18
3352 3549 3.907894 TCAAAAACATCGCCCAACTAC 57.092 42.857 0.00 0.00 0.00 2.73
3405 3602 5.105269 TGCATGTCAAAGAAATATGCATGGT 60.105 36.000 10.16 0.00 46.31 3.55
3454 3651 9.624697 AATTGTAATAGCACATGTTGTAAGTTG 57.375 29.630 0.00 0.00 0.00 3.16
3482 3679 3.931578 ACTTGGACATAGAACTGCAGAC 58.068 45.455 23.35 13.87 0.00 3.51
3483 3680 3.265791 CTTGGACATAGAACTGCAGACC 58.734 50.000 23.35 11.35 0.00 3.85
3489 3686 4.243270 ACATAGAACTGCAGACCGTAAAC 58.757 43.478 23.35 2.27 0.00 2.01
3495 3692 5.581085 AGAACTGCAGACCGTAAACATATTC 59.419 40.000 23.35 8.68 0.00 1.75
3519 3716 3.823304 GAGTCAAAAGAAGATTGCCACCT 59.177 43.478 0.00 0.00 0.00 4.00
3577 3774 2.513395 TGGGACAATGCACGTGGT 59.487 55.556 18.88 6.25 31.92 4.16
3596 3793 0.454600 TACCGTCGAGCTTGCCTTAG 59.545 55.000 0.00 0.00 0.00 2.18
3597 3794 1.248785 ACCGTCGAGCTTGCCTTAGA 61.249 55.000 0.00 0.00 0.00 2.10
3598 3795 0.526524 CCGTCGAGCTTGCCTTAGAG 60.527 60.000 0.00 0.00 0.00 2.43
3599 3796 1.142778 CGTCGAGCTTGCCTTAGAGC 61.143 60.000 0.00 0.00 39.17 4.09
3600 3797 0.108615 GTCGAGCTTGCCTTAGAGCA 60.109 55.000 0.00 0.00 41.31 4.26
3601 3798 0.826715 TCGAGCTTGCCTTAGAGCAT 59.173 50.000 0.00 0.00 43.64 3.79
3602 3799 1.202463 TCGAGCTTGCCTTAGAGCATC 60.202 52.381 0.00 0.00 43.64 3.91
3614 3811 2.378028 GAGCATCTCCAACAGTCGC 58.622 57.895 0.00 0.00 0.00 5.19
3615 3812 1.416813 GAGCATCTCCAACAGTCGCG 61.417 60.000 0.00 0.00 0.00 5.87
3616 3813 3.084579 CATCTCCAACAGTCGCGC 58.915 61.111 0.00 0.00 0.00 6.86
3617 3814 1.446792 CATCTCCAACAGTCGCGCT 60.447 57.895 5.56 0.00 0.00 5.92
3618 3815 0.179137 CATCTCCAACAGTCGCGCTA 60.179 55.000 5.56 0.00 0.00 4.26
3619 3816 0.530744 ATCTCCAACAGTCGCGCTAA 59.469 50.000 5.56 0.00 0.00 3.09
3620 3817 0.315886 TCTCCAACAGTCGCGCTAAA 59.684 50.000 5.56 0.00 0.00 1.85
3621 3818 0.438830 CTCCAACAGTCGCGCTAAAC 59.561 55.000 5.56 0.45 0.00 2.01
3622 3819 0.249531 TCCAACAGTCGCGCTAAACA 60.250 50.000 5.56 0.00 0.00 2.83
3623 3820 0.584396 CCAACAGTCGCGCTAAACAA 59.416 50.000 5.56 0.00 0.00 2.83
3624 3821 1.398451 CCAACAGTCGCGCTAAACAAG 60.398 52.381 5.56 0.98 0.00 3.16
3625 3822 1.260561 CAACAGTCGCGCTAAACAAGT 59.739 47.619 5.56 1.60 0.00 3.16
3626 3823 0.859232 ACAGTCGCGCTAAACAAGTG 59.141 50.000 5.56 0.00 38.84 3.16
3627 3824 0.859232 CAGTCGCGCTAAACAAGTGT 59.141 50.000 5.56 0.00 38.05 3.55
3628 3825 1.136611 CAGTCGCGCTAAACAAGTGTC 60.137 52.381 5.56 0.00 38.05 3.67
3629 3826 0.179282 GTCGCGCTAAACAAGTGTCG 60.179 55.000 5.56 0.00 38.05 4.35
3630 3827 1.507096 CGCGCTAAACAAGTGTCGC 60.507 57.895 5.56 5.46 38.05 5.19
3631 3828 1.507096 GCGCTAAACAAGTGTCGCG 60.507 57.895 0.00 0.00 39.96 5.87
3632 3829 1.850640 CGCTAAACAAGTGTCGCGT 59.149 52.632 5.77 0.00 35.73 6.01
3633 3830 0.179282 CGCTAAACAAGTGTCGCGTC 60.179 55.000 5.77 0.00 35.73 5.19
3634 3831 0.179282 GCTAAACAAGTGTCGCGTCG 60.179 55.000 5.77 0.00 0.00 5.12
3635 3832 0.179282 CTAAACAAGTGTCGCGTCGC 60.179 55.000 7.29 7.29 0.00 5.19
3636 3833 0.870735 TAAACAAGTGTCGCGTCGCA 60.871 50.000 18.75 8.04 0.00 5.10
3637 3834 1.697772 AAACAAGTGTCGCGTCGCAA 61.698 50.000 18.75 0.00 0.00 4.85
3638 3835 1.697772 AACAAGTGTCGCGTCGCAAA 61.698 50.000 18.75 1.04 0.00 3.68
3639 3836 1.204062 CAAGTGTCGCGTCGCAAAT 59.796 52.632 18.75 0.00 0.00 2.32
3640 3837 0.384230 CAAGTGTCGCGTCGCAAATT 60.384 50.000 18.75 4.76 0.00 1.82
3641 3838 0.306533 AAGTGTCGCGTCGCAAATTT 59.693 45.000 18.75 2.03 0.00 1.82
3642 3839 0.384230 AGTGTCGCGTCGCAAATTTG 60.384 50.000 18.75 14.03 0.00 2.32
3643 3840 1.082431 TGTCGCGTCGCAAATTTGG 60.082 52.632 19.47 9.84 0.00 3.28
3644 3841 2.127042 TCGCGTCGCAAATTTGGC 60.127 55.556 19.47 12.71 0.00 4.52
3645 3842 3.171911 CGCGTCGCAAATTTGGCC 61.172 61.111 19.47 0.00 0.00 5.36
3646 3843 2.049618 GCGTCGCAAATTTGGCCA 60.050 55.556 19.47 0.00 0.00 5.36
3647 3844 1.445926 GCGTCGCAAATTTGGCCAT 60.446 52.632 19.47 0.00 0.00 4.40
3648 3845 1.013524 GCGTCGCAAATTTGGCCATT 61.014 50.000 19.47 0.00 0.00 3.16
3649 3846 1.427435 CGTCGCAAATTTGGCCATTT 58.573 45.000 19.47 1.35 0.00 2.32
3650 3847 1.797635 CGTCGCAAATTTGGCCATTTT 59.202 42.857 19.47 7.37 0.00 1.82
3651 3848 2.989840 CGTCGCAAATTTGGCCATTTTA 59.010 40.909 19.47 0.00 0.00 1.52
3652 3849 3.060628 CGTCGCAAATTTGGCCATTTTAG 59.939 43.478 19.47 7.94 0.00 1.85
3653 3850 2.999355 TCGCAAATTTGGCCATTTTAGC 59.001 40.909 19.47 14.16 0.00 3.09
3654 3851 2.222774 CGCAAATTTGGCCATTTTAGCG 60.223 45.455 25.26 25.26 35.42 4.26
3655 3852 2.476018 GCAAATTTGGCCATTTTAGCGC 60.476 45.455 19.47 0.00 0.00 5.92
3656 3853 1.639280 AATTTGGCCATTTTAGCGCG 58.361 45.000 6.09 0.00 0.00 6.86
3657 3854 0.530288 ATTTGGCCATTTTAGCGCGT 59.470 45.000 6.09 0.00 0.00 6.01
3658 3855 0.387878 TTTGGCCATTTTAGCGCGTG 60.388 50.000 6.09 0.00 0.00 5.34
3659 3856 2.579518 GGCCATTTTAGCGCGTGC 60.580 61.111 14.39 14.39 43.24 5.34
3715 3912 4.819082 GCGTGTGCGGTATAAGGA 57.181 55.556 0.00 0.00 38.78 3.36
3716 3913 2.589890 GCGTGTGCGGTATAAGGAG 58.410 57.895 0.00 0.00 38.78 3.69
3717 3914 0.179119 GCGTGTGCGGTATAAGGAGT 60.179 55.000 0.00 0.00 38.78 3.85
3718 3915 1.738030 GCGTGTGCGGTATAAGGAGTT 60.738 52.381 0.00 0.00 38.78 3.01
3719 3916 1.924524 CGTGTGCGGTATAAGGAGTTG 59.075 52.381 0.00 0.00 0.00 3.16
3720 3917 2.277084 GTGTGCGGTATAAGGAGTTGG 58.723 52.381 0.00 0.00 0.00 3.77
3721 3918 1.208535 TGTGCGGTATAAGGAGTTGGG 59.791 52.381 0.00 0.00 0.00 4.12
3722 3919 0.179468 TGCGGTATAAGGAGTTGGGC 59.821 55.000 0.00 0.00 0.00 5.36
3723 3920 0.878961 GCGGTATAAGGAGTTGGGCG 60.879 60.000 0.00 0.00 0.00 6.13
3724 3921 0.878961 CGGTATAAGGAGTTGGGCGC 60.879 60.000 0.00 0.00 0.00 6.53
3725 3922 0.878961 GGTATAAGGAGTTGGGCGCG 60.879 60.000 0.00 0.00 0.00 6.86
3726 3923 1.227438 TATAAGGAGTTGGGCGCGC 60.227 57.895 25.94 25.94 0.00 6.86
3727 3924 2.964438 TATAAGGAGTTGGGCGCGCG 62.964 60.000 28.44 28.44 0.00 6.86
3744 3941 2.869354 CGGTCGGTTTCGCTATCTC 58.131 57.895 0.00 0.00 36.13 2.75
3745 3942 0.928908 CGGTCGGTTTCGCTATCTCG 60.929 60.000 0.00 0.00 36.13 4.04
3746 3943 1.207377 GGTCGGTTTCGCTATCTCGC 61.207 60.000 0.00 0.00 36.13 5.03
3755 3952 3.481009 GCTATCTCGCGCTGTGTAT 57.519 52.632 5.56 0.00 0.00 2.29
3756 3953 1.772182 GCTATCTCGCGCTGTGTATT 58.228 50.000 5.56 0.00 0.00 1.89
3757 3954 2.128035 GCTATCTCGCGCTGTGTATTT 58.872 47.619 5.56 0.00 0.00 1.40
3758 3955 2.097202 GCTATCTCGCGCTGTGTATTTG 60.097 50.000 5.56 0.00 0.00 2.32
3759 3956 1.290203 ATCTCGCGCTGTGTATTTGG 58.710 50.000 5.56 0.00 0.00 3.28
3760 3957 0.739462 TCTCGCGCTGTGTATTTGGG 60.739 55.000 5.56 0.00 0.00 4.12
3761 3958 1.705337 CTCGCGCTGTGTATTTGGGG 61.705 60.000 5.56 0.00 0.00 4.96
3762 3959 2.489751 GCGCTGTGTATTTGGGGC 59.510 61.111 0.00 0.00 0.00 5.80
3763 3960 2.791256 CGCTGTGTATTTGGGGCG 59.209 61.111 0.00 0.00 36.89 6.13
3764 3961 2.489751 GCTGTGTATTTGGGGCGC 59.510 61.111 0.00 0.00 0.00 6.53
3765 3962 3.063743 GCTGTGTATTTGGGGCGCC 62.064 63.158 21.18 21.18 0.00 6.53
3766 3963 2.361865 TGTGTATTTGGGGCGCCC 60.362 61.111 38.57 38.57 45.71 6.13
3800 3997 3.782244 CACTTGAGTGCTCGCGCC 61.782 66.667 0.00 0.00 39.39 6.53
3813 4010 4.863925 GCGCCGCACTCTCTCCTC 62.864 72.222 3.15 0.00 0.00 3.71
3814 4011 3.137459 CGCCGCACTCTCTCCTCT 61.137 66.667 0.00 0.00 0.00 3.69
3815 4012 2.804856 GCCGCACTCTCTCCTCTC 59.195 66.667 0.00 0.00 0.00 3.20
3816 4013 2.781158 GCCGCACTCTCTCCTCTCC 61.781 68.421 0.00 0.00 0.00 3.71
3817 4014 2.477176 CCGCACTCTCTCCTCTCCG 61.477 68.421 0.00 0.00 0.00 4.63
3818 4015 2.804856 GCACTCTCTCCTCTCCGC 59.195 66.667 0.00 0.00 0.00 5.54
3819 4016 2.781158 GCACTCTCTCCTCTCCGCC 61.781 68.421 0.00 0.00 0.00 6.13
3820 4017 1.077068 CACTCTCTCCTCTCCGCCT 60.077 63.158 0.00 0.00 0.00 5.52
3821 4018 1.101049 CACTCTCTCCTCTCCGCCTC 61.101 65.000 0.00 0.00 0.00 4.70
3822 4019 1.528309 CTCTCTCCTCTCCGCCTCC 60.528 68.421 0.00 0.00 0.00 4.30
3823 4020 1.994885 CTCTCTCCTCTCCGCCTCCT 61.995 65.000 0.00 0.00 0.00 3.69
3824 4021 0.694783 TCTCTCCTCTCCGCCTCCTA 60.695 60.000 0.00 0.00 0.00 2.94
3825 4022 0.536460 CTCTCCTCTCCGCCTCCTAC 60.536 65.000 0.00 0.00 0.00 3.18
3826 4023 1.894756 CTCCTCTCCGCCTCCTACG 60.895 68.421 0.00 0.00 0.00 3.51
3827 4024 3.597728 CCTCTCCGCCTCCTACGC 61.598 72.222 0.00 0.00 0.00 4.42
3828 4025 3.597728 CTCTCCGCCTCCTACGCC 61.598 72.222 0.00 0.00 0.00 5.68
3861 4058 4.701663 CAGACGAACTGCACCCAT 57.298 55.556 0.00 0.00 39.86 4.00
3862 4059 2.165380 CAGACGAACTGCACCCATG 58.835 57.895 0.00 0.00 39.86 3.66
3863 4060 1.003355 AGACGAACTGCACCCATGG 60.003 57.895 4.14 4.14 0.00 3.66
3864 4061 1.003839 GACGAACTGCACCCATGGA 60.004 57.895 15.22 0.00 0.00 3.41
3865 4062 1.298859 GACGAACTGCACCCATGGAC 61.299 60.000 15.22 2.53 0.00 4.02
3866 4063 2.390599 CGAACTGCACCCATGGACG 61.391 63.158 15.22 4.45 0.00 4.79
3867 4064 2.672996 AACTGCACCCATGGACGC 60.673 61.111 15.22 15.78 0.00 5.19
3868 4065 3.490031 AACTGCACCCATGGACGCA 62.490 57.895 22.11 22.11 34.65 5.24
3869 4066 3.434319 CTGCACCCATGGACGCAC 61.434 66.667 20.35 4.05 33.04 5.34
3894 4091 4.489771 CACCCCGCTCACCCCATC 62.490 72.222 0.00 0.00 0.00 3.51
3897 4094 2.445845 CCCGCTCACCCCATCCTA 60.446 66.667 0.00 0.00 0.00 2.94
3898 4095 1.843376 CCCGCTCACCCCATCCTAT 60.843 63.158 0.00 0.00 0.00 2.57
3899 4096 0.544357 CCCGCTCACCCCATCCTATA 60.544 60.000 0.00 0.00 0.00 1.31
3900 4097 0.898320 CCGCTCACCCCATCCTATAG 59.102 60.000 0.00 0.00 0.00 1.31
3901 4098 0.247736 CGCTCACCCCATCCTATAGC 59.752 60.000 0.00 0.00 0.00 2.97
3902 4099 0.615850 GCTCACCCCATCCTATAGCC 59.384 60.000 0.00 0.00 0.00 3.93
3903 4100 0.898320 CTCACCCCATCCTATAGCCG 59.102 60.000 0.00 0.00 0.00 5.52
3904 4101 1.192146 TCACCCCATCCTATAGCCGC 61.192 60.000 0.00 0.00 0.00 6.53
3905 4102 2.283529 ACCCCATCCTATAGCCGCG 61.284 63.158 0.00 0.00 0.00 6.46
3906 4103 1.982395 CCCCATCCTATAGCCGCGA 60.982 63.158 8.23 0.00 0.00 5.87
3907 4104 1.215647 CCCATCCTATAGCCGCGAC 59.784 63.158 8.23 0.00 0.00 5.19
3908 4105 1.215647 CCATCCTATAGCCGCGACC 59.784 63.158 8.23 0.00 0.00 4.79
3909 4106 1.215647 CATCCTATAGCCGCGACCC 59.784 63.158 8.23 0.00 0.00 4.46
3910 4107 1.982938 ATCCTATAGCCGCGACCCC 60.983 63.158 8.23 0.00 0.00 4.95
3911 4108 2.442519 ATCCTATAGCCGCGACCCCT 62.443 60.000 8.23 0.15 0.00 4.79
3912 4109 2.637383 CCTATAGCCGCGACCCCTC 61.637 68.421 8.23 0.00 0.00 4.30
3913 4110 2.599578 TATAGCCGCGACCCCTCC 60.600 66.667 8.23 0.00 0.00 4.30
3914 4111 3.142770 TATAGCCGCGACCCCTCCT 62.143 63.158 8.23 0.00 0.00 3.69
3988 4185 2.514824 GGAGCTCCGCCAACCATC 60.515 66.667 19.06 0.00 0.00 3.51
3989 4186 2.892425 GAGCTCCGCCAACCATCG 60.892 66.667 0.87 0.00 0.00 3.84
3990 4187 4.473520 AGCTCCGCCAACCATCGG 62.474 66.667 0.00 0.00 46.52 4.18
4012 4209 3.869272 GCGCGTGGCCTCTTCATG 61.869 66.667 8.43 0.00 34.80 3.07
4013 4210 3.869272 CGCGTGGCCTCTTCATGC 61.869 66.667 3.32 0.00 42.05 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.461078 TCTCACCTAATAAATAAAGCGACGC 59.539 40.000 13.03 13.03 0.00 5.19
46 47 6.344780 CGTCTCACCTAATAAATAAAGCGACG 60.345 42.308 0.00 0.00 33.37 5.12
48 49 6.474427 CACGTCTCACCTAATAAATAAAGCGA 59.526 38.462 0.00 0.00 0.00 4.93
49 50 6.292168 CCACGTCTCACCTAATAAATAAAGCG 60.292 42.308 0.00 0.00 0.00 4.68
52 53 7.185318 TCCCACGTCTCACCTAATAAATAAA 57.815 36.000 0.00 0.00 0.00 1.40
55 56 5.671493 CTTCCCACGTCTCACCTAATAAAT 58.329 41.667 0.00 0.00 0.00 1.40
56 57 4.622220 GCTTCCCACGTCTCACCTAATAAA 60.622 45.833 0.00 0.00 0.00 1.40
58 59 2.429610 GCTTCCCACGTCTCACCTAATA 59.570 50.000 0.00 0.00 0.00 0.98
59 60 1.207329 GCTTCCCACGTCTCACCTAAT 59.793 52.381 0.00 0.00 0.00 1.73
91 92 4.887071 ACGAGAGGCCAGAGATATGATATC 59.113 45.833 5.01 4.27 0.00 1.63
143 262 9.871238 TCTGGAGTAGTAAATGTTGTTATCTTC 57.129 33.333 0.00 0.00 0.00 2.87
159 278 4.322049 CGTCAATTGTCCTTCTGGAGTAGT 60.322 45.833 5.13 0.00 44.16 2.73
181 300 1.532794 AGATCCCCTGCTAGGCTCG 60.533 63.158 0.00 0.00 32.73 5.03
182 301 2.056985 CAGATCCCCTGCTAGGCTC 58.943 63.158 0.00 0.00 35.89 4.70
207 326 0.400213 TCAAGGTCATCCGCTGGTTT 59.600 50.000 0.00 0.00 39.05 3.27
314 433 6.540551 GTGTCTCTGAACTCCTTTTTCTCTTT 59.459 38.462 0.00 0.00 0.00 2.52
325 444 2.605823 CGTGAGTGTGTCTCTGAACTCC 60.606 54.545 4.49 0.00 43.13 3.85
357 476 1.767289 TCTCTGCGTCGACTTTTGTC 58.233 50.000 14.70 0.00 45.55 3.18
358 477 2.218953 TTCTCTGCGTCGACTTTTGT 57.781 45.000 14.70 0.00 0.00 2.83
359 478 2.348591 GGTTTCTCTGCGTCGACTTTTG 60.349 50.000 14.70 0.00 0.00 2.44
360 479 1.865340 GGTTTCTCTGCGTCGACTTTT 59.135 47.619 14.70 0.00 0.00 2.27
361 480 1.202486 TGGTTTCTCTGCGTCGACTTT 60.202 47.619 14.70 0.00 0.00 2.66
362 481 0.387929 TGGTTTCTCTGCGTCGACTT 59.612 50.000 14.70 0.00 0.00 3.01
365 484 1.202486 ACTTTGGTTTCTCTGCGTCGA 60.202 47.619 0.00 0.00 0.00 4.20
369 488 3.120511 GCTTAGACTTTGGTTTCTCTGCG 60.121 47.826 0.00 0.00 0.00 5.18
445 564 3.064987 GCGCGTCTCTTCCTGGCTA 62.065 63.158 8.43 0.00 0.00 3.93
580 699 1.517242 GATCAATGGAGGCGGATGAC 58.483 55.000 0.00 0.00 0.00 3.06
581 700 0.033920 CGATCAATGGAGGCGGATGA 59.966 55.000 0.00 0.00 0.00 2.92
582 701 0.033920 TCGATCAATGGAGGCGGATG 59.966 55.000 0.00 0.00 0.00 3.51
590 715 0.318441 GCCGGAGATCGATCAATGGA 59.682 55.000 26.47 0.00 42.43 3.41
595 720 0.891449 GAGGAGCCGGAGATCGATCA 60.891 60.000 26.47 0.00 42.43 2.92
628 753 0.041488 CTACGAAGGGCGCTACGTAG 60.041 60.000 26.18 26.18 46.91 3.51
630 755 2.768492 CCTACGAAGGGCGCTACGT 61.768 63.158 19.80 19.80 46.04 3.57
642 767 3.196913 TTCGCACACGCACCTACGA 62.197 57.895 0.00 0.00 39.84 3.43
675 801 0.040692 GGTTTCGGTTTCGGACTTGC 60.041 55.000 0.00 0.00 36.95 4.01
676 802 1.301423 TGGTTTCGGTTTCGGACTTG 58.699 50.000 0.00 0.00 36.95 3.16
678 804 1.672363 GTTTGGTTTCGGTTTCGGACT 59.328 47.619 0.00 0.00 36.95 3.85
852 988 7.414098 CGCTTTGGTAAGAACAGTTAAGCATAT 60.414 37.037 12.86 0.00 37.25 1.78
853 989 6.128391 CGCTTTGGTAAGAACAGTTAAGCATA 60.128 38.462 12.86 2.08 37.25 3.14
854 990 5.334879 CGCTTTGGTAAGAACAGTTAAGCAT 60.335 40.000 12.86 0.00 37.25 3.79
857 993 4.024387 TGCGCTTTGGTAAGAACAGTTAAG 60.024 41.667 9.73 0.00 32.92 1.85
879 1015 1.796982 CGACCTCGTGATGAGCTTCTG 60.797 57.143 0.00 0.00 43.82 3.02
888 1024 2.264794 GGCAACCGACCTCGTGAT 59.735 61.111 0.00 0.00 37.74 3.06
892 1028 3.934391 GACCTGGCAACCGACCTCG 62.934 68.421 0.00 0.00 39.44 4.63
928 1064 2.047750 TAATCGTGCGTGCAGGCA 60.048 55.556 28.89 28.89 41.45 4.75
935 1071 3.589061 TTTGTTTTCGTAATCGTGCGT 57.411 38.095 0.00 0.00 38.33 5.24
938 1074 7.459604 CGGATTCATTTTGTTTTCGTAATCGTG 60.460 37.037 0.00 0.00 38.33 4.35
948 1084 5.120053 GGCGAAATCGGATTCATTTTGTTTT 59.880 36.000 3.28 0.00 40.23 2.43
949 1085 4.625311 GGCGAAATCGGATTCATTTTGTTT 59.375 37.500 3.28 0.00 40.23 2.83
950 1086 4.082245 AGGCGAAATCGGATTCATTTTGTT 60.082 37.500 3.28 0.00 40.23 2.83
951 1087 3.443681 AGGCGAAATCGGATTCATTTTGT 59.556 39.130 3.28 0.00 40.23 2.83
952 1088 4.032703 AGGCGAAATCGGATTCATTTTG 57.967 40.909 3.28 0.00 40.23 2.44
986 1122 2.386064 TTAAAGCCACGCACCGGAGT 62.386 55.000 9.46 1.54 0.00 3.85
1032 1169 5.297547 GGATTGAATCAGTATGCGGAAGTA 58.702 41.667 7.56 0.00 34.76 2.24
1033 1170 4.130118 GGATTGAATCAGTATGCGGAAGT 58.870 43.478 7.56 0.00 34.76 3.01
1037 1174 1.800586 CGGGATTGAATCAGTATGCGG 59.199 52.381 7.56 0.00 34.76 5.69
1039 1176 3.733337 ACTCGGGATTGAATCAGTATGC 58.267 45.455 7.56 0.00 34.76 3.14
1042 1179 4.383770 GGGAAACTCGGGATTGAATCAGTA 60.384 45.833 7.56 0.00 0.00 2.74
1063 1200 2.434359 GCAAACTCGAGACCGGGG 60.434 66.667 21.68 3.30 41.49 5.73
1072 1209 2.517450 GGATCGCCTCGCAAACTCG 61.517 63.158 0.00 0.00 0.00 4.18
1191 1350 2.963371 GTCGCCTCGAAGTCCACT 59.037 61.111 0.00 0.00 37.72 4.00
1370 1529 3.432588 CGTCGACGTCCTCCTGCT 61.433 66.667 29.08 0.00 34.11 4.24
1485 1645 1.134788 CAGTCTCCCCATGTAACGACC 60.135 57.143 0.00 0.00 0.00 4.79
1525 1685 1.429463 CTTAAGCGGCACTCGAACTT 58.571 50.000 1.45 0.00 42.43 2.66
1905 2084 2.781300 GCAGTAGCAGAAGCACGC 59.219 61.111 0.00 0.00 45.49 5.34
1945 2124 2.348998 CACCACACCTCCTCTGGC 59.651 66.667 0.00 0.00 0.00 4.85
2185 2368 6.669125 AGCTATGTCTGATTCTAGATTGCT 57.331 37.500 0.00 0.00 0.00 3.91
2189 2372 9.545928 AAAGGATAGCTATGTCTGATTCTAGAT 57.454 33.333 11.94 0.00 0.00 1.98
2204 2387 8.903820 GGAATTGCTTTTCTTAAAGGATAGCTA 58.096 33.333 0.00 0.00 40.72 3.32
2205 2388 7.147828 GGGAATTGCTTTTCTTAAAGGATAGCT 60.148 37.037 2.80 0.00 40.72 3.32
2206 2389 6.980978 GGGAATTGCTTTTCTTAAAGGATAGC 59.019 38.462 0.00 0.00 40.72 2.97
2207 2390 7.148069 ACGGGAATTGCTTTTCTTAAAGGATAG 60.148 37.037 0.00 0.00 40.72 2.08
2208 2391 6.661805 ACGGGAATTGCTTTTCTTAAAGGATA 59.338 34.615 0.00 0.00 40.72 2.59
2209 2392 5.480422 ACGGGAATTGCTTTTCTTAAAGGAT 59.520 36.000 0.00 0.00 40.72 3.24
2210 2393 4.830600 ACGGGAATTGCTTTTCTTAAAGGA 59.169 37.500 0.00 0.00 40.90 3.36
2211 2394 4.923281 CACGGGAATTGCTTTTCTTAAAGG 59.077 41.667 0.00 0.00 40.90 3.11
2212 2395 4.385748 GCACGGGAATTGCTTTTCTTAAAG 59.614 41.667 0.00 0.00 42.97 1.85
2213 2396 4.202161 TGCACGGGAATTGCTTTTCTTAAA 60.202 37.500 0.00 0.00 40.86 1.52
2214 2397 3.319405 TGCACGGGAATTGCTTTTCTTAA 59.681 39.130 0.00 0.00 40.86 1.85
2215 2398 2.887783 TGCACGGGAATTGCTTTTCTTA 59.112 40.909 0.00 0.00 40.86 2.10
2216 2399 1.686052 TGCACGGGAATTGCTTTTCTT 59.314 42.857 0.00 0.00 40.86 2.52
2247 2432 5.243283 GCCTGCATCTCCATCTAAATCAAAT 59.757 40.000 0.00 0.00 0.00 2.32
2250 2435 3.136992 TGCCTGCATCTCCATCTAAATCA 59.863 43.478 0.00 0.00 0.00 2.57
2269 2460 7.170658 GTGAAATACAGATAGAAGAGATGTGCC 59.829 40.741 0.00 0.00 0.00 5.01
2276 2467 7.961351 AGATGGGTGAAATACAGATAGAAGAG 58.039 38.462 0.00 0.00 0.00 2.85
2284 2475 8.727100 ATATGACTAGATGGGTGAAATACAGA 57.273 34.615 0.00 0.00 0.00 3.41
2325 2516 5.417266 GCAGAGAGTAGATGCATAGACCATA 59.583 44.000 0.00 0.00 39.75 2.74
2332 2523 3.513119 GGATGGCAGAGAGTAGATGCATA 59.487 47.826 0.00 0.00 41.78 3.14
2349 2540 4.489771 GGTCTGTGGGCCGGATGG 62.490 72.222 5.05 0.00 38.77 3.51
2353 2544 3.783362 TTTGTGGTCTGTGGGCCGG 62.783 63.158 0.00 0.00 0.00 6.13
2354 2545 2.203280 TTTGTGGTCTGTGGGCCG 60.203 61.111 0.00 0.00 0.00 6.13
2355 2546 2.200337 GGTTTGTGGTCTGTGGGCC 61.200 63.158 0.00 0.00 0.00 5.80
2356 2547 2.200337 GGGTTTGTGGTCTGTGGGC 61.200 63.158 0.00 0.00 0.00 5.36
2360 2551 0.185901 AGCATGGGTTTGTGGTCTGT 59.814 50.000 0.00 0.00 0.00 3.41
2361 2552 1.331214 AAGCATGGGTTTGTGGTCTG 58.669 50.000 0.00 0.00 0.00 3.51
2362 2553 2.086610 AAAGCATGGGTTTGTGGTCT 57.913 45.000 0.00 0.00 31.83 3.85
2363 2554 2.908688 AAAAGCATGGGTTTGTGGTC 57.091 45.000 0.00 0.00 33.41 4.02
2379 2570 6.847400 TCAAACTTCGAACTGACATGAAAAA 58.153 32.000 0.00 0.00 0.00 1.94
2389 2580 9.107367 GATAAAGTGATTTCAAACTTCGAACTG 57.893 33.333 0.00 0.00 35.60 3.16
2391 2582 9.665264 AAGATAAAGTGATTTCAAACTTCGAAC 57.335 29.630 0.00 0.00 35.60 3.95
2420 2611 4.600692 AGCTAAATCGGGCTTTTTGTTT 57.399 36.364 0.00 0.00 34.96 2.83
2449 2640 6.929049 CCTCGTCAGCAGGAACATAAATATTA 59.071 38.462 0.00 0.00 31.91 0.98
2450 2641 5.760253 CCTCGTCAGCAGGAACATAAATATT 59.240 40.000 0.00 0.00 31.91 1.28
2451 2642 5.070446 TCCTCGTCAGCAGGAACATAAATAT 59.930 40.000 0.00 0.00 37.09 1.28
2459 2650 0.318762 AAGTCCTCGTCAGCAGGAAC 59.681 55.000 0.00 0.00 41.94 3.62
2466 2657 5.122512 TCTTGTTTAGAAGTCCTCGTCAG 57.877 43.478 0.00 0.00 0.00 3.51
2546 2737 6.778821 TGGAGTTTTACCATCTTTCATCAGA 58.221 36.000 0.00 0.00 32.03 3.27
2549 2740 7.630242 TCATGGAGTTTTACCATCTTTCATC 57.370 36.000 0.00 0.00 45.00 2.92
2551 2742 7.286546 TGTTTCATGGAGTTTTACCATCTTTCA 59.713 33.333 0.00 0.00 45.00 2.69
2562 2753 4.648762 TCACACCATGTTTCATGGAGTTTT 59.351 37.500 28.27 8.84 40.23 2.43
2629 2820 7.884257 TGCATCATTGTGTTTCTCAATAGAAA 58.116 30.769 0.00 0.00 46.96 2.52
2631 2822 7.451501 TTGCATCATTGTGTTTCTCAATAGA 57.548 32.000 0.00 0.00 34.34 1.98
2632 2823 8.188799 AGATTGCATCATTGTGTTTCTCAATAG 58.811 33.333 0.00 0.00 34.34 1.73
2634 2825 6.931838 AGATTGCATCATTGTGTTTCTCAAT 58.068 32.000 0.00 0.00 36.16 2.57
2636 2827 5.970317 AGATTGCATCATTGTGTTTCTCA 57.030 34.783 0.00 0.00 0.00 3.27
2637 2828 6.845302 TGTAGATTGCATCATTGTGTTTCTC 58.155 36.000 0.00 0.00 0.00 2.87
2638 2829 6.822667 TGTAGATTGCATCATTGTGTTTCT 57.177 33.333 0.00 0.00 0.00 2.52
2640 2831 6.747125 TGTTGTAGATTGCATCATTGTGTTT 58.253 32.000 0.00 0.00 0.00 2.83
2641 2832 6.330004 TGTTGTAGATTGCATCATTGTGTT 57.670 33.333 0.00 0.00 0.00 3.32
2642 2833 5.963176 TGTTGTAGATTGCATCATTGTGT 57.037 34.783 0.00 0.00 0.00 3.72
2643 2834 7.216920 CAATGTTGTAGATTGCATCATTGTG 57.783 36.000 16.21 1.68 42.76 3.33
2738 2929 7.989741 ACATATTTGGAGTCCTGTTAAGAGATG 59.010 37.037 11.33 0.75 0.00 2.90
2747 2939 8.650143 ATTTGTTTACATATTTGGAGTCCTGT 57.350 30.769 11.33 8.44 0.00 4.00
2777 2969 9.731519 CGTAGCTTTTGAATGAAAATTTTGATC 57.268 29.630 8.47 4.42 32.98 2.92
2799 2991 7.916450 TGAGTCCAAAATTTTAAAACCACGTAG 59.084 33.333 1.97 0.00 0.00 3.51
2803 2995 8.487313 AGTTGAGTCCAAAATTTTAAAACCAC 57.513 30.769 1.97 0.00 33.49 4.16
2818 3010 8.877864 AATCCATACATTTTAAGTTGAGTCCA 57.122 30.769 0.00 0.00 0.00 4.02
2848 3040 5.112686 CCACCTAGATTCTTTCTTTCCTCG 58.887 45.833 0.00 0.00 35.79 4.63
2854 3046 4.175962 TGACCCCACCTAGATTCTTTCTT 58.824 43.478 0.00 0.00 35.79 2.52
2856 3048 4.779993 ATGACCCCACCTAGATTCTTTC 57.220 45.455 0.00 0.00 0.00 2.62
2863 3055 1.062428 CACCCTATGACCCCACCTAGA 60.062 57.143 0.00 0.00 0.00 2.43
2867 3059 1.618447 ACCACCCTATGACCCCACC 60.618 63.158 0.00 0.00 0.00 4.61
2870 3062 0.912487 TCACACCACCCTATGACCCC 60.912 60.000 0.00 0.00 0.00 4.95
2884 3076 9.847706 CCACTGTACTATCTATGATAATCACAC 57.152 37.037 0.00 0.00 0.00 3.82
2885 3077 9.025041 CCCACTGTACTATCTATGATAATCACA 57.975 37.037 0.00 0.00 0.00 3.58
2888 3080 7.976734 GTGCCCACTGTACTATCTATGATAATC 59.023 40.741 0.00 0.00 0.00 1.75
2890 3082 7.010771 AGTGCCCACTGTACTATCTATGATAA 58.989 38.462 0.00 0.00 38.23 1.75
2892 3084 5.398236 AGTGCCCACTGTACTATCTATGAT 58.602 41.667 0.00 0.00 38.23 2.45
2893 3085 4.804597 AGTGCCCACTGTACTATCTATGA 58.195 43.478 0.00 0.00 38.23 2.15
2894 3086 4.830046 AGAGTGCCCACTGTACTATCTATG 59.170 45.833 5.53 0.00 40.31 2.23
2896 3088 4.207955 CAGAGTGCCCACTGTACTATCTA 58.792 47.826 5.53 0.00 40.31 1.98
2897 3089 3.027412 CAGAGTGCCCACTGTACTATCT 58.973 50.000 5.53 0.00 40.31 1.98
2898 3090 2.482142 GCAGAGTGCCCACTGTACTATC 60.482 54.545 5.53 0.00 40.31 2.08
2910 3103 2.782222 CCCATGCATGCAGAGTGCC 61.782 63.158 26.69 0.00 44.23 5.01
2912 3105 2.265589 TATCCCATGCATGCAGAGTG 57.734 50.000 26.69 18.78 0.00 3.51
2913 3106 2.290768 GGATATCCCATGCATGCAGAGT 60.291 50.000 26.69 6.48 34.14 3.24
2914 3107 2.366533 GGATATCCCATGCATGCAGAG 58.633 52.381 26.69 19.81 34.14 3.35
2915 3108 2.502142 GGATATCCCATGCATGCAGA 57.498 50.000 26.69 17.99 34.14 4.26
2930 3124 4.448210 GTTTTTCTACCATGCTCGGGATA 58.552 43.478 0.00 0.00 0.00 2.59
2961 3155 6.510746 TGAAAACGAATATGCGACAGATAG 57.489 37.500 10.90 0.00 34.83 2.08
2962 3156 8.079809 TCTATGAAAACGAATATGCGACAGATA 58.920 33.333 10.90 0.00 34.83 1.98
2965 3159 6.417930 TCTCTATGAAAACGAATATGCGACAG 59.582 38.462 10.90 0.00 34.83 3.51
2966 3160 6.270064 TCTCTATGAAAACGAATATGCGACA 58.730 36.000 10.90 4.95 34.83 4.35
3076 3270 7.275888 TGCTTGTTGATGTTGAACTAAGAAT 57.724 32.000 0.00 0.00 0.00 2.40
3113 3307 8.263940 TCTCGTCCAGACAAAATTAATAAAGG 57.736 34.615 0.00 0.00 0.00 3.11
3139 3333 2.363680 CGGATGAATGAGCTCCACTAGT 59.636 50.000 12.15 0.00 0.00 2.57
3143 3337 1.162800 GCCGGATGAATGAGCTCCAC 61.163 60.000 12.15 3.11 0.00 4.02
3145 3339 1.599240 GGCCGGATGAATGAGCTCC 60.599 63.158 12.15 0.00 0.00 4.70
3151 3345 2.430465 CCTATGAAGGCCGGATGAATG 58.570 52.381 5.05 0.00 35.64 2.67
3163 3357 1.382522 ACAACATGCCGCCTATGAAG 58.617 50.000 0.00 0.00 0.00 3.02
3168 3362 2.170817 TGGTATAACAACATGCCGCCTA 59.829 45.455 0.00 0.00 33.68 3.93
3200 3394 6.497259 GGAACCCCTCTGTGATGAACTATATA 59.503 42.308 0.00 0.00 0.00 0.86
3206 3400 1.351017 TGGAACCCCTCTGTGATGAAC 59.649 52.381 0.00 0.00 0.00 3.18
3233 3427 3.129813 ACATGTTATGTCTTGGCATGCTG 59.870 43.478 18.92 8.52 39.92 4.41
3247 3444 3.797039 CCTCCGACATGACACATGTTAT 58.203 45.455 16.58 0.00 31.52 1.89
3281 3478 2.091885 AGAGCCTCCAACAAAGAAACCA 60.092 45.455 0.00 0.00 0.00 3.67
3284 3481 2.878406 CGAAGAGCCTCCAACAAAGAAA 59.122 45.455 0.00 0.00 0.00 2.52
3304 3501 1.555538 GAGCGCGCTGAACTAATCG 59.444 57.895 41.82 0.00 0.00 3.34
3325 3522 4.265893 TGGGCGATGTTTTTGAATAGCTA 58.734 39.130 0.00 0.00 0.00 3.32
3328 3525 5.059404 AGTTGGGCGATGTTTTTGAATAG 57.941 39.130 0.00 0.00 0.00 1.73
3330 3527 4.279671 TGTAGTTGGGCGATGTTTTTGAAT 59.720 37.500 0.00 0.00 0.00 2.57
3331 3528 3.632604 TGTAGTTGGGCGATGTTTTTGAA 59.367 39.130 0.00 0.00 0.00 2.69
3335 3532 5.968528 TTAATGTAGTTGGGCGATGTTTT 57.031 34.783 0.00 0.00 0.00 2.43
3387 3584 7.407393 TGATGAACCATGCATATTTCTTTGA 57.593 32.000 16.47 1.99 0.00 2.69
3405 3602 3.353370 TGTGCATCCTCACATGATGAA 57.647 42.857 0.00 0.00 41.57 2.57
3428 3625 9.624697 CAACTTACAACATGTGCTATTACAATT 57.375 29.630 0.00 0.00 33.69 2.32
3429 3626 8.792633 ACAACTTACAACATGTGCTATTACAAT 58.207 29.630 0.00 0.00 33.69 2.71
3430 3627 8.160521 ACAACTTACAACATGTGCTATTACAA 57.839 30.769 0.00 0.00 33.69 2.41
3431 3628 7.737972 ACAACTTACAACATGTGCTATTACA 57.262 32.000 0.00 0.00 34.63 2.41
3432 3629 8.932791 ACTACAACTTACAACATGTGCTATTAC 58.067 33.333 0.00 0.00 0.00 1.89
3433 3630 9.496873 AACTACAACTTACAACATGTGCTATTA 57.503 29.630 0.00 0.00 0.00 0.98
3434 3631 7.979444 ACTACAACTTACAACATGTGCTATT 57.021 32.000 0.00 0.00 0.00 1.73
3453 3650 6.872020 GCAGTTCTATGTCCAAGTTAACTACA 59.128 38.462 8.92 10.26 0.00 2.74
3454 3651 6.872020 TGCAGTTCTATGTCCAAGTTAACTAC 59.128 38.462 8.92 4.27 0.00 2.73
3471 3668 2.902705 TGTTTACGGTCTGCAGTTCT 57.097 45.000 14.67 0.00 0.00 3.01
3482 3679 8.251750 TCTTTTGACTCTGAATATGTTTACGG 57.748 34.615 0.00 0.00 0.00 4.02
3483 3680 9.746711 CTTCTTTTGACTCTGAATATGTTTACG 57.253 33.333 0.00 0.00 0.00 3.18
3489 3686 7.914346 GGCAATCTTCTTTTGACTCTGAATATG 59.086 37.037 0.00 0.00 0.00 1.78
3495 3692 4.320788 GGTGGCAATCTTCTTTTGACTCTG 60.321 45.833 0.00 0.00 33.08 3.35
3538 3735 2.405061 GATGCTTGTGCGTGTTGGCA 62.405 55.000 0.00 0.00 43.34 4.92
3574 3771 2.260434 GCAAGCTCGACGGTACCA 59.740 61.111 13.54 0.00 0.00 3.25
3577 3774 0.454600 CTAAGGCAAGCTCGACGGTA 59.545 55.000 0.00 0.00 0.00 4.02
3596 3793 1.416813 CGCGACTGTTGGAGATGCTC 61.417 60.000 0.00 0.00 0.00 4.26
3597 3794 1.446792 CGCGACTGTTGGAGATGCT 60.447 57.895 0.00 0.00 0.00 3.79
3598 3795 3.084579 CGCGACTGTTGGAGATGC 58.915 61.111 0.00 0.00 0.00 3.91
3599 3796 0.179137 TAGCGCGACTGTTGGAGATG 60.179 55.000 12.10 0.00 0.00 2.90
3600 3797 0.530744 TTAGCGCGACTGTTGGAGAT 59.469 50.000 12.10 0.00 0.00 2.75
3601 3798 0.315886 TTTAGCGCGACTGTTGGAGA 59.684 50.000 12.10 0.00 0.00 3.71
3602 3799 0.438830 GTTTAGCGCGACTGTTGGAG 59.561 55.000 12.10 0.00 0.00 3.86
3603 3800 0.249531 TGTTTAGCGCGACTGTTGGA 60.250 50.000 12.10 0.00 0.00 3.53
3604 3801 0.584396 TTGTTTAGCGCGACTGTTGG 59.416 50.000 12.10 0.00 0.00 3.77
3605 3802 1.260561 ACTTGTTTAGCGCGACTGTTG 59.739 47.619 12.10 0.00 0.00 3.33
3606 3803 1.260561 CACTTGTTTAGCGCGACTGTT 59.739 47.619 12.10 0.00 0.00 3.16
3607 3804 0.859232 CACTTGTTTAGCGCGACTGT 59.141 50.000 12.10 0.00 0.00 3.55
3608 3805 0.859232 ACACTTGTTTAGCGCGACTG 59.141 50.000 12.10 0.00 0.00 3.51
3609 3806 1.137513 GACACTTGTTTAGCGCGACT 58.862 50.000 12.10 9.58 0.00 4.18
3610 3807 0.179282 CGACACTTGTTTAGCGCGAC 60.179 55.000 12.10 0.04 0.00 5.19
3611 3808 1.882682 GCGACACTTGTTTAGCGCGA 61.883 55.000 12.10 0.00 35.02 5.87
3612 3809 1.507096 GCGACACTTGTTTAGCGCG 60.507 57.895 0.00 0.00 35.02 6.86
3613 3810 1.507096 CGCGACACTTGTTTAGCGC 60.507 57.895 0.00 0.00 38.79 5.92
3614 3811 0.179282 GACGCGACACTTGTTTAGCG 60.179 55.000 15.93 19.17 45.09 4.26
3615 3812 0.179282 CGACGCGACACTTGTTTAGC 60.179 55.000 15.93 0.00 0.00 3.09
3616 3813 0.179282 GCGACGCGACACTTGTTTAG 60.179 55.000 15.93 0.00 0.00 1.85
3617 3814 0.870735 TGCGACGCGACACTTGTTTA 60.871 50.000 15.93 0.00 0.00 2.01
3618 3815 1.697772 TTGCGACGCGACACTTGTTT 61.698 50.000 15.93 0.00 0.00 2.83
3619 3816 1.697772 TTTGCGACGCGACACTTGTT 61.698 50.000 15.93 0.00 0.00 2.83
3620 3817 1.495584 ATTTGCGACGCGACACTTGT 61.496 50.000 15.93 0.00 0.00 3.16
3621 3818 0.384230 AATTTGCGACGCGACACTTG 60.384 50.000 15.93 0.00 0.00 3.16
3622 3819 0.306533 AAATTTGCGACGCGACACTT 59.693 45.000 15.93 4.24 0.00 3.16
3623 3820 0.384230 CAAATTTGCGACGCGACACT 60.384 50.000 15.93 0.00 0.00 3.55
3624 3821 1.327292 CCAAATTTGCGACGCGACAC 61.327 55.000 15.93 0.00 0.00 3.67
3625 3822 1.082431 CCAAATTTGCGACGCGACA 60.082 52.632 15.93 4.89 0.00 4.35
3626 3823 2.425394 GCCAAATTTGCGACGCGAC 61.425 57.895 15.93 5.54 0.00 5.19
3627 3824 2.127042 GCCAAATTTGCGACGCGA 60.127 55.556 15.93 11.15 0.00 5.87
3628 3825 3.171911 GGCCAAATTTGCGACGCG 61.172 61.111 16.14 3.53 0.00 6.01
3629 3826 1.013524 AATGGCCAAATTTGCGACGC 61.014 50.000 10.96 14.19 0.00 5.19
3630 3827 1.427435 AAATGGCCAAATTTGCGACG 58.573 45.000 10.96 0.30 0.00 5.12
3631 3828 3.181521 GCTAAAATGGCCAAATTTGCGAC 60.182 43.478 23.20 8.88 30.21 5.19
3632 3829 2.999355 GCTAAAATGGCCAAATTTGCGA 59.001 40.909 23.20 6.26 30.21 5.10
3633 3830 2.222774 CGCTAAAATGGCCAAATTTGCG 60.223 45.455 31.34 31.34 36.36 4.85
3634 3831 2.476018 GCGCTAAAATGGCCAAATTTGC 60.476 45.455 23.20 22.49 30.21 3.68
3635 3832 2.222774 CGCGCTAAAATGGCCAAATTTG 60.223 45.455 23.20 11.40 30.21 2.32
3636 3833 1.999024 CGCGCTAAAATGGCCAAATTT 59.001 42.857 10.96 17.02 0.00 1.82
3637 3834 1.067213 ACGCGCTAAAATGGCCAAATT 60.067 42.857 10.96 10.85 0.00 1.82
3638 3835 0.530288 ACGCGCTAAAATGGCCAAAT 59.470 45.000 10.96 0.00 0.00 2.32
3639 3836 0.387878 CACGCGCTAAAATGGCCAAA 60.388 50.000 10.96 0.00 0.00 3.28
3640 3837 1.211449 CACGCGCTAAAATGGCCAA 59.789 52.632 10.96 0.00 0.00 4.52
3641 3838 2.874019 CACGCGCTAAAATGGCCA 59.126 55.556 8.56 8.56 0.00 5.36
3642 3839 2.579518 GCACGCGCTAAAATGGCC 60.580 61.111 5.73 0.00 34.30 5.36
3643 3840 2.944049 CGCACGCGCTAAAATGGC 60.944 61.111 5.73 0.00 35.30 4.40
3698 3895 0.179119 ACTCCTTATACCGCACACGC 60.179 55.000 0.00 0.00 38.22 5.34
3699 3896 1.924524 CAACTCCTTATACCGCACACG 59.075 52.381 0.00 0.00 39.67 4.49
3700 3897 2.277084 CCAACTCCTTATACCGCACAC 58.723 52.381 0.00 0.00 0.00 3.82
3701 3898 1.208535 CCCAACTCCTTATACCGCACA 59.791 52.381 0.00 0.00 0.00 4.57
3702 3899 1.949465 CCCAACTCCTTATACCGCAC 58.051 55.000 0.00 0.00 0.00 5.34
3703 3900 0.179468 GCCCAACTCCTTATACCGCA 59.821 55.000 0.00 0.00 0.00 5.69
3704 3901 0.878961 CGCCCAACTCCTTATACCGC 60.879 60.000 0.00 0.00 0.00 5.68
3705 3902 0.878961 GCGCCCAACTCCTTATACCG 60.879 60.000 0.00 0.00 0.00 4.02
3706 3903 0.878961 CGCGCCCAACTCCTTATACC 60.879 60.000 0.00 0.00 0.00 2.73
3707 3904 1.496403 GCGCGCCCAACTCCTTATAC 61.496 60.000 23.24 0.00 0.00 1.47
3708 3905 1.227438 GCGCGCCCAACTCCTTATA 60.227 57.895 23.24 0.00 0.00 0.98
3709 3906 2.513897 GCGCGCCCAACTCCTTAT 60.514 61.111 23.24 0.00 0.00 1.73
3726 3923 0.928908 CGAGATAGCGAAACCGACCG 60.929 60.000 0.00 0.00 0.00 4.79
3727 3924 1.207377 GCGAGATAGCGAAACCGACC 61.207 60.000 0.00 0.00 0.00 4.79
3728 3925 2.205385 GCGAGATAGCGAAACCGAC 58.795 57.895 0.00 0.00 0.00 4.79
3729 3926 4.704007 GCGAGATAGCGAAACCGA 57.296 55.556 0.00 0.00 0.00 4.69
3737 3934 1.772182 AATACACAGCGCGAGATAGC 58.228 50.000 12.10 0.00 0.00 2.97
3738 3935 2.472861 CCAAATACACAGCGCGAGATAG 59.527 50.000 12.10 0.00 0.00 2.08
3739 3936 2.469826 CCAAATACACAGCGCGAGATA 58.530 47.619 12.10 0.22 0.00 1.98
3740 3937 1.290203 CCAAATACACAGCGCGAGAT 58.710 50.000 12.10 0.00 0.00 2.75
3741 3938 0.739462 CCCAAATACACAGCGCGAGA 60.739 55.000 12.10 0.00 0.00 4.04
3742 3939 1.705337 CCCCAAATACACAGCGCGAG 61.705 60.000 12.10 3.23 0.00 5.03
3743 3940 1.743623 CCCCAAATACACAGCGCGA 60.744 57.895 12.10 0.00 0.00 5.87
3744 3941 2.791256 CCCCAAATACACAGCGCG 59.209 61.111 0.00 0.00 0.00 6.86
3745 3942 2.489751 GCCCCAAATACACAGCGC 59.510 61.111 0.00 0.00 0.00 5.92
3746 3943 2.791256 CGCCCCAAATACACAGCG 59.209 61.111 0.00 0.00 37.39 5.18
3747 3944 2.489751 GCGCCCCAAATACACAGC 59.510 61.111 0.00 0.00 0.00 4.40
3748 3945 2.414785 GGGCGCCCCAAATACACAG 61.415 63.158 36.64 0.00 44.65 3.66
3749 3946 2.361865 GGGCGCCCCAAATACACA 60.362 61.111 36.64 0.00 44.65 3.72
3750 3947 3.514362 CGGGCGCCCCAAATACAC 61.514 66.667 39.24 11.89 45.83 2.90
3753 3950 4.434354 AAGCGGGCGCCCCAAATA 62.434 61.111 39.24 0.00 45.83 1.40
3775 3972 4.374702 CACTCAAGTGTGCCGCGC 62.375 66.667 0.00 0.00 40.96 6.86
3796 3993 4.863925 GAGGAGAGAGTGCGGCGC 62.864 72.222 27.44 27.44 0.00 6.53
3797 3994 3.119709 GAGAGGAGAGAGTGCGGCG 62.120 68.421 0.51 0.51 0.00 6.46
3798 3995 2.781158 GGAGAGGAGAGAGTGCGGC 61.781 68.421 0.00 0.00 0.00 6.53
3799 3996 2.477176 CGGAGAGGAGAGAGTGCGG 61.477 68.421 0.00 0.00 0.00 5.69
3800 3997 3.106552 CGGAGAGGAGAGAGTGCG 58.893 66.667 0.00 0.00 0.00 5.34
3801 3998 2.781158 GGCGGAGAGGAGAGAGTGC 61.781 68.421 0.00 0.00 0.00 4.40
3802 3999 1.077068 AGGCGGAGAGGAGAGAGTG 60.077 63.158 0.00 0.00 0.00 3.51
3803 4000 1.226262 GAGGCGGAGAGGAGAGAGT 59.774 63.158 0.00 0.00 0.00 3.24
3804 4001 1.528309 GGAGGCGGAGAGGAGAGAG 60.528 68.421 0.00 0.00 0.00 3.20
3805 4002 0.694783 TAGGAGGCGGAGAGGAGAGA 60.695 60.000 0.00 0.00 0.00 3.10
3806 4003 0.536460 GTAGGAGGCGGAGAGGAGAG 60.536 65.000 0.00 0.00 0.00 3.20
3807 4004 1.532728 GTAGGAGGCGGAGAGGAGA 59.467 63.158 0.00 0.00 0.00 3.71
3808 4005 1.894756 CGTAGGAGGCGGAGAGGAG 60.895 68.421 0.00 0.00 0.00 3.69
3809 4006 2.192443 CGTAGGAGGCGGAGAGGA 59.808 66.667 0.00 0.00 0.00 3.71
3810 4007 3.597728 GCGTAGGAGGCGGAGAGG 61.598 72.222 0.00 0.00 0.00 3.69
3811 4008 3.597728 GGCGTAGGAGGCGGAGAG 61.598 72.222 0.00 0.00 0.00 3.20
3844 4041 1.300971 CCATGGGTGCAGTTCGTCTG 61.301 60.000 2.85 6.13 46.12 3.51
3845 4042 1.003355 CCATGGGTGCAGTTCGTCT 60.003 57.895 2.85 0.00 0.00 4.18
3846 4043 1.003839 TCCATGGGTGCAGTTCGTC 60.004 57.895 13.02 0.00 0.00 4.20
3847 4044 1.302511 GTCCATGGGTGCAGTTCGT 60.303 57.895 13.02 0.00 0.00 3.85
3848 4045 2.390599 CGTCCATGGGTGCAGTTCG 61.391 63.158 13.02 1.09 0.00 3.95
3849 4046 2.690778 GCGTCCATGGGTGCAGTTC 61.691 63.158 20.12 0.00 0.00 3.01
3850 4047 2.672996 GCGTCCATGGGTGCAGTT 60.673 61.111 20.12 0.00 0.00 3.16
3851 4048 3.952508 TGCGTCCATGGGTGCAGT 61.953 61.111 22.78 0.00 33.18 4.40
3852 4049 3.434319 GTGCGTCCATGGGTGCAG 61.434 66.667 25.84 9.53 36.32 4.41
3877 4074 4.489771 GATGGGGTGAGCGGGGTG 62.490 72.222 0.00 0.00 0.00 4.61
3879 4076 3.930394 TATAGGATGGGGTGAGCGGGG 62.930 61.905 0.00 0.00 0.00 5.73
3880 4077 0.544357 TATAGGATGGGGTGAGCGGG 60.544 60.000 0.00 0.00 0.00 6.13
3881 4078 0.898320 CTATAGGATGGGGTGAGCGG 59.102 60.000 0.00 0.00 0.00 5.52
3882 4079 0.247736 GCTATAGGATGGGGTGAGCG 59.752 60.000 1.04 0.00 0.00 5.03
3883 4080 0.615850 GGCTATAGGATGGGGTGAGC 59.384 60.000 1.04 0.00 0.00 4.26
3884 4081 0.898320 CGGCTATAGGATGGGGTGAG 59.102 60.000 1.04 0.00 0.00 3.51
3885 4082 1.192146 GCGGCTATAGGATGGGGTGA 61.192 60.000 1.04 0.00 0.00 4.02
3886 4083 1.296715 GCGGCTATAGGATGGGGTG 59.703 63.158 1.04 0.00 0.00 4.61
3887 4084 2.283529 CGCGGCTATAGGATGGGGT 61.284 63.158 0.00 0.00 0.00 4.95
3888 4085 1.982395 TCGCGGCTATAGGATGGGG 60.982 63.158 6.13 0.00 0.00 4.96
3889 4086 1.215647 GTCGCGGCTATAGGATGGG 59.784 63.158 1.90 0.00 0.00 4.00
3890 4087 1.215647 GGTCGCGGCTATAGGATGG 59.784 63.158 11.94 0.00 0.00 3.51
3891 4088 1.215647 GGGTCGCGGCTATAGGATG 59.784 63.158 11.94 0.00 0.00 3.51
3892 4089 1.982938 GGGGTCGCGGCTATAGGAT 60.983 63.158 11.94 0.00 0.00 3.24
3893 4090 2.599578 GGGGTCGCGGCTATAGGA 60.600 66.667 11.94 0.00 0.00 2.94
3894 4091 2.600769 AGGGGTCGCGGCTATAGG 60.601 66.667 11.94 0.00 0.00 2.57
3895 4092 2.637383 GGAGGGGTCGCGGCTATAG 61.637 68.421 11.94 0.00 0.00 1.31
3896 4093 2.599578 GGAGGGGTCGCGGCTATA 60.600 66.667 11.94 0.00 0.00 1.31
3897 4094 4.541648 AGGAGGGGTCGCGGCTAT 62.542 66.667 11.94 0.00 0.00 2.97
3995 4192 3.869272 CATGAAGAGGCCACGCGC 61.869 66.667 5.73 0.00 0.00 6.86
3996 4193 3.869272 GCATGAAGAGGCCACGCG 61.869 66.667 5.01 3.53 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.