Multiple sequence alignment - TraesCS3B01G190800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G190800 | chr3B | 100.000 | 2663 | 0 | 0 | 1 | 2663 | 203641974 | 203644636 | 0.000000e+00 | 4918.0 |
1 | TraesCS3B01G190800 | chr3A | 92.311 | 2055 | 113 | 22 | 181 | 2207 | 160073646 | 160075683 | 0.000000e+00 | 2878.0 |
2 | TraesCS3B01G190800 | chr3A | 90.909 | 352 | 22 | 6 | 2316 | 2661 | 160075689 | 160076036 | 5.190000e-127 | 464.0 |
3 | TraesCS3B01G190800 | chr3A | 90.226 | 133 | 12 | 1 | 1 | 132 | 160073517 | 160073649 | 3.520000e-39 | 172.0 |
4 | TraesCS3B01G190800 | chr3D | 91.555 | 1788 | 90 | 17 | 164 | 1918 | 141657293 | 141659052 | 0.000000e+00 | 2409.0 |
5 | TraesCS3B01G190800 | chr3D | 95.904 | 293 | 12 | 0 | 1907 | 2199 | 141659505 | 141659797 | 2.400000e-130 | 475.0 |
6 | TraesCS3B01G190800 | chr3D | 90.055 | 362 | 19 | 11 | 2316 | 2663 | 141659810 | 141660168 | 1.120000e-123 | 453.0 |
7 | TraesCS3B01G190800 | chr3D | 74.568 | 405 | 83 | 9 | 79 | 482 | 96672449 | 96672064 | 2.740000e-35 | 159.0 |
8 | TraesCS3B01G190800 | chr3D | 97.403 | 77 | 1 | 1 | 2205 | 2281 | 392282167 | 392282092 | 2.150000e-26 | 130.0 |
9 | TraesCS3B01G190800 | chr3D | 97.143 | 70 | 2 | 0 | 2212 | 2281 | 604683582 | 604683513 | 4.660000e-23 | 119.0 |
10 | TraesCS3B01G190800 | chr7D | 82.057 | 457 | 74 | 5 | 20 | 471 | 138285758 | 138285305 | 1.500000e-102 | 383.0 |
11 | TraesCS3B01G190800 | chr7D | 94.805 | 77 | 3 | 1 | 2205 | 2281 | 131620132 | 131620207 | 4.660000e-23 | 119.0 |
12 | TraesCS3B01G190800 | chr7D | 83.065 | 124 | 20 | 1 | 36 | 159 | 99967007 | 99966885 | 7.790000e-21 | 111.0 |
13 | TraesCS3B01G190800 | chrUn | 81.513 | 476 | 77 | 8 | 20 | 484 | 10264374 | 10263899 | 5.380000e-102 | 381.0 |
14 | TraesCS3B01G190800 | chr5A | 80.425 | 424 | 80 | 3 | 36 | 458 | 356103572 | 356103151 | 1.190000e-83 | 320.0 |
15 | TraesCS3B01G190800 | chr2B | 80.285 | 421 | 82 | 1 | 38 | 458 | 569979080 | 569978661 | 1.540000e-82 | 316.0 |
16 | TraesCS3B01G190800 | chr2D | 77.731 | 476 | 87 | 16 | 20 | 484 | 49353838 | 49353371 | 9.390000e-70 | 274.0 |
17 | TraesCS3B01G190800 | chr2D | 83.516 | 91 | 14 | 1 | 56 | 146 | 398308702 | 398308791 | 1.700000e-12 | 84.2 |
18 | TraesCS3B01G190800 | chr2A | 80.059 | 341 | 64 | 3 | 135 | 474 | 749909370 | 749909033 | 1.580000e-62 | 250.0 |
19 | TraesCS3B01G190800 | chr6D | 82.258 | 186 | 32 | 1 | 58 | 242 | 453964285 | 453964100 | 2.740000e-35 | 159.0 |
20 | TraesCS3B01G190800 | chr6D | 98.571 | 70 | 1 | 0 | 2212 | 2281 | 24825486 | 24825555 | 1.000000e-24 | 124.0 |
21 | TraesCS3B01G190800 | chr1A | 96.000 | 75 | 3 | 0 | 2207 | 2281 | 561611238 | 561611312 | 3.600000e-24 | 122.0 |
22 | TraesCS3B01G190800 | chr4D | 94.805 | 77 | 3 | 1 | 2205 | 2281 | 497036281 | 497036356 | 4.660000e-23 | 119.0 |
23 | TraesCS3B01G190800 | chr1B | 95.946 | 74 | 2 | 1 | 2208 | 2281 | 436383753 | 436383681 | 4.660000e-23 | 119.0 |
24 | TraesCS3B01G190800 | chr5D | 89.888 | 89 | 7 | 2 | 2193 | 2281 | 455323432 | 455323346 | 2.170000e-21 | 113.0 |
25 | TraesCS3B01G190800 | chr6A | 93.333 | 75 | 5 | 0 | 2207 | 2281 | 1090373 | 1090299 | 7.790000e-21 | 111.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G190800 | chr3B | 203641974 | 203644636 | 2662 | False | 4918.000000 | 4918 | 100.000000 | 1 | 2663 | 1 | chr3B.!!$F1 | 2662 |
1 | TraesCS3B01G190800 | chr3A | 160073517 | 160076036 | 2519 | False | 1171.333333 | 2878 | 91.148667 | 1 | 2661 | 3 | chr3A.!!$F1 | 2660 |
2 | TraesCS3B01G190800 | chr3D | 141657293 | 141660168 | 2875 | False | 1112.333333 | 2409 | 92.504667 | 164 | 2663 | 3 | chr3D.!!$F1 | 2499 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
353 | 356 | 0.846427 | AGGAGGATTGGAAGCCCACA | 60.846 | 55.0 | 0.0 | 0.0 | 43.41 | 4.17 | F |
1527 | 1549 | 0.322546 | GGAAGAACGGGAACAGCCAT | 60.323 | 55.0 | 0.0 | 0.0 | 38.95 | 4.40 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1617 | 1639 | 0.039437 | GGAGAACGACGAGCAAGTGA | 60.039 | 55.0 | 0.0 | 0.0 | 0.0 | 3.41 | R |
2601 | 3121 | 1.665137 | TTTTAGGGTGAGGGAGGGAC | 58.335 | 55.0 | 0.0 | 0.0 | 0.0 | 4.46 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 6.285790 | GTTGCTTTTGTGGTGAAAATAAGG | 57.714 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
44 | 46 | 1.264288 | GTTGCTTTTGGTGAGGAGTCG | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
59 | 61 | 5.419155 | TGAGGAGTCGATTCAGTGTCTATTT | 59.581 | 40.000 | 10.32 | 0.00 | 0.00 | 1.40 |
66 | 68 | 6.809196 | GTCGATTCAGTGTCTATTTCTTCACT | 59.191 | 38.462 | 0.00 | 0.00 | 41.02 | 3.41 |
98 | 100 | 2.656560 | AGCTATTATGGCGATCGGTC | 57.343 | 50.000 | 18.30 | 0.00 | 34.52 | 4.79 |
105 | 107 | 5.607939 | ATTATGGCGATCGGTCCATATAA | 57.392 | 39.130 | 25.55 | 18.06 | 42.85 | 0.98 |
106 | 108 | 2.736144 | TGGCGATCGGTCCATATAAC | 57.264 | 50.000 | 18.30 | 0.00 | 0.00 | 1.89 |
132 | 134 | 6.540438 | TTAATCTACCTCTACCCACAAGTG | 57.460 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
133 | 135 | 3.820195 | TCTACCTCTACCCACAAGTGA | 57.180 | 47.619 | 0.94 | 0.00 | 0.00 | 3.41 |
134 | 136 | 4.332683 | TCTACCTCTACCCACAAGTGAT | 57.667 | 45.455 | 0.94 | 0.00 | 0.00 | 3.06 |
135 | 137 | 5.461516 | TCTACCTCTACCCACAAGTGATA | 57.538 | 43.478 | 0.94 | 0.00 | 0.00 | 2.15 |
136 | 138 | 6.027025 | TCTACCTCTACCCACAAGTGATAT | 57.973 | 41.667 | 0.94 | 0.00 | 0.00 | 1.63 |
137 | 139 | 5.833667 | TCTACCTCTACCCACAAGTGATATG | 59.166 | 44.000 | 0.94 | 0.00 | 0.00 | 1.78 |
138 | 140 | 4.620723 | ACCTCTACCCACAAGTGATATGA | 58.379 | 43.478 | 0.94 | 0.00 | 0.00 | 2.15 |
139 | 141 | 5.030147 | ACCTCTACCCACAAGTGATATGAA | 58.970 | 41.667 | 0.94 | 0.00 | 0.00 | 2.57 |
140 | 142 | 5.667626 | ACCTCTACCCACAAGTGATATGAAT | 59.332 | 40.000 | 0.94 | 0.00 | 0.00 | 2.57 |
141 | 143 | 6.844388 | ACCTCTACCCACAAGTGATATGAATA | 59.156 | 38.462 | 0.94 | 0.00 | 0.00 | 1.75 |
142 | 144 | 7.514127 | ACCTCTACCCACAAGTGATATGAATAT | 59.486 | 37.037 | 0.94 | 0.00 | 0.00 | 1.28 |
143 | 145 | 7.821359 | CCTCTACCCACAAGTGATATGAATATG | 59.179 | 40.741 | 0.94 | 0.00 | 0.00 | 1.78 |
144 | 146 | 8.262601 | TCTACCCACAAGTGATATGAATATGT | 57.737 | 34.615 | 0.94 | 0.00 | 0.00 | 2.29 |
145 | 147 | 8.713971 | TCTACCCACAAGTGATATGAATATGTT | 58.286 | 33.333 | 0.94 | 0.00 | 0.00 | 2.71 |
146 | 148 | 7.807977 | ACCCACAAGTGATATGAATATGTTC | 57.192 | 36.000 | 0.94 | 0.00 | 34.85 | 3.18 |
147 | 149 | 6.483307 | ACCCACAAGTGATATGAATATGTTCG | 59.517 | 38.462 | 0.94 | 0.00 | 37.15 | 3.95 |
148 | 150 | 6.705825 | CCCACAAGTGATATGAATATGTTCGA | 59.294 | 38.462 | 0.94 | 0.00 | 37.15 | 3.71 |
149 | 151 | 7.226523 | CCCACAAGTGATATGAATATGTTCGAA | 59.773 | 37.037 | 0.94 | 0.00 | 37.15 | 3.71 |
150 | 152 | 8.611757 | CCACAAGTGATATGAATATGTTCGAAA | 58.388 | 33.333 | 0.00 | 0.00 | 37.15 | 3.46 |
151 | 153 | 9.986833 | CACAAGTGATATGAATATGTTCGAAAA | 57.013 | 29.630 | 0.00 | 0.00 | 37.15 | 2.29 |
152 | 154 | 9.988350 | ACAAGTGATATGAATATGTTCGAAAAC | 57.012 | 29.630 | 0.00 | 0.00 | 37.15 | 2.43 |
162 | 164 | 9.917129 | TGAATATGTTCGAAAACTAGTTAGTGA | 57.083 | 29.630 | 8.92 | 4.11 | 37.15 | 3.41 |
166 | 168 | 7.035840 | TGTTCGAAAACTAGTTAGTGAGAGT | 57.964 | 36.000 | 8.92 | 0.00 | 36.50 | 3.24 |
168 | 170 | 6.630444 | TCGAAAACTAGTTAGTGAGAGTGT | 57.370 | 37.500 | 8.92 | 0.00 | 36.50 | 3.55 |
192 | 194 | 3.261897 | TCCCAAGTTGAAGTCTCAGATCC | 59.738 | 47.826 | 3.87 | 0.00 | 31.69 | 3.36 |
217 | 219 | 8.030106 | CCGTATGAAAATTTGGGCTTTACTTTA | 58.970 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
218 | 220 | 9.413048 | CGTATGAAAATTTGGGCTTTACTTTAA | 57.587 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
242 | 244 | 6.215845 | AGCCATTTCAAACACTTGTAATGAC | 58.784 | 36.000 | 14.88 | 6.95 | 45.82 | 3.06 |
243 | 245 | 5.405269 | GCCATTTCAAACACTTGTAATGACC | 59.595 | 40.000 | 14.88 | 5.85 | 45.82 | 4.02 |
256 | 258 | 9.666626 | CACTTGTAATGACCGTATTTTTAACAA | 57.333 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
345 | 348 | 1.600058 | ATGCAAGGAGGAGGATTGGA | 58.400 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
353 | 356 | 0.846427 | AGGAGGATTGGAAGCCCACA | 60.846 | 55.000 | 0.00 | 0.00 | 43.41 | 4.17 |
433 | 436 | 6.618196 | AGTTGGTGGGCTATTAGTAGGATTTA | 59.382 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
487 | 494 | 4.615588 | TTTTATTTCCCTTGGGCAACTG | 57.384 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
488 | 495 | 1.555967 | TATTTCCCTTGGGCAACTGC | 58.444 | 50.000 | 0.00 | 0.00 | 41.14 | 4.40 |
571 | 578 | 1.332889 | ACTCGATGATGCAGAGGCCA | 61.333 | 55.000 | 5.01 | 0.00 | 40.13 | 5.36 |
649 | 661 | 7.710676 | ATTAGTAGTGCTATTCCTCGATGAT | 57.289 | 36.000 | 0.00 | 0.00 | 0.00 | 2.45 |
686 | 698 | 6.112058 | CCTCACTCTTTCTTTAGATGGAAGG | 58.888 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
690 | 702 | 7.235606 | TCACTCTTTCTTTAGATGGAAGGAAGA | 59.764 | 37.037 | 7.23 | 7.23 | 43.23 | 2.87 |
702 | 714 | 3.379057 | TGGAAGGAAGAACGGTTTTTGTC | 59.621 | 43.478 | 0.93 | 0.00 | 0.00 | 3.18 |
788 | 800 | 2.507886 | TGAGTTCAAGTCCCAGGAAACA | 59.492 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
842 | 854 | 6.963049 | AATAACGACTACATTGACTGGAAC | 57.037 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
843 | 855 | 2.942710 | ACGACTACATTGACTGGAACG | 58.057 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
844 | 856 | 2.295349 | ACGACTACATTGACTGGAACGT | 59.705 | 45.455 | 0.00 | 0.00 | 0.00 | 3.99 |
845 | 857 | 3.503363 | ACGACTACATTGACTGGAACGTA | 59.497 | 43.478 | 0.00 | 0.00 | 0.00 | 3.57 |
914 | 926 | 2.158943 | CGTATTCAGTTCCCTCCCTTCC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
964 | 976 | 2.429610 | TCTACCGAACATACTTCAGCCC | 59.570 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
967 | 979 | 1.737793 | CCGAACATACTTCAGCCCAAC | 59.262 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
1043 | 1055 | 4.637489 | CCTCGCGCTCAGGATCGG | 62.637 | 72.222 | 15.53 | 0.00 | 31.91 | 4.18 |
1047 | 1059 | 4.593864 | GCGCTCAGGATCGGGACC | 62.594 | 72.222 | 0.00 | 0.00 | 0.00 | 4.46 |
1190 | 1202 | 2.032528 | TGCTCCCAGCTGTTTCCG | 59.967 | 61.111 | 13.81 | 0.00 | 42.97 | 4.30 |
1432 | 1454 | 5.298276 | TGATTAGGTCGTTTTTGCTGAACTT | 59.702 | 36.000 | 0.00 | 0.00 | 30.94 | 2.66 |
1442 | 1464 | 3.713858 | TTGCTGAACTTGTTGTCATGG | 57.286 | 42.857 | 0.00 | 0.00 | 0.00 | 3.66 |
1451 | 1473 | 2.677524 | TTGTCATGGGCTGCAGGC | 60.678 | 61.111 | 30.97 | 30.97 | 40.90 | 4.85 |
1527 | 1549 | 0.322546 | GGAAGAACGGGAACAGCCAT | 60.323 | 55.000 | 0.00 | 0.00 | 38.95 | 4.40 |
1584 | 1606 | 3.295304 | CTGCGACCATGTCACGGGA | 62.295 | 63.158 | 0.00 | 0.00 | 32.09 | 5.14 |
1617 | 1639 | 3.606065 | CTTCGTCGCGGTCGTCCTT | 62.606 | 63.158 | 19.63 | 0.00 | 36.96 | 3.36 |
1623 | 1645 | 2.372690 | CGCGGTCGTCCTTCACTTG | 61.373 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
1726 | 1766 | 5.295152 | TCGAATATACACGCTCTCTCAGTA | 58.705 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1825 | 1865 | 0.245539 | TAAAGCTTCGTCGACCCAGG | 59.754 | 55.000 | 10.58 | 0.00 | 0.00 | 4.45 |
1918 | 2422 | 5.065218 | ACAATGTTTCTTGTCACTGTGAGTC | 59.935 | 40.000 | 11.41 | 0.83 | 34.26 | 3.36 |
1937 | 2441 | 1.757118 | TCGGCCAAGATCGATTCTTCT | 59.243 | 47.619 | 2.24 | 0.00 | 42.98 | 2.85 |
1969 | 2473 | 6.877611 | TGTATGAGTATGAGCGAGTAATGA | 57.122 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2190 | 2698 | 5.991328 | AGCTATTGTCCGAACATGTATTG | 57.009 | 39.130 | 0.00 | 0.00 | 34.73 | 1.90 |
2199 | 2707 | 3.353524 | CGAACATGTATTGGAATGCACG | 58.646 | 45.455 | 0.00 | 0.00 | 33.87 | 5.34 |
2202 | 2710 | 2.682856 | ACATGTATTGGAATGCACGTCC | 59.317 | 45.455 | 10.75 | 10.75 | 33.87 | 4.79 |
2203 | 2711 | 1.364721 | TGTATTGGAATGCACGTCCG | 58.635 | 50.000 | 12.46 | 0.00 | 38.06 | 4.79 |
2204 | 2712 | 1.066787 | TGTATTGGAATGCACGTCCGA | 60.067 | 47.619 | 10.05 | 10.05 | 38.06 | 4.55 |
2206 | 2714 | 1.750193 | ATTGGAATGCACGTCCGATT | 58.250 | 45.000 | 13.25 | 0.04 | 36.02 | 3.34 |
2207 | 2715 | 2.388310 | TTGGAATGCACGTCCGATTA | 57.612 | 45.000 | 12.46 | 0.00 | 38.06 | 1.75 |
2208 | 2716 | 2.613026 | TGGAATGCACGTCCGATTAT | 57.387 | 45.000 | 12.46 | 0.00 | 38.06 | 1.28 |
2209 | 2717 | 3.737032 | TGGAATGCACGTCCGATTATA | 57.263 | 42.857 | 12.46 | 0.00 | 38.06 | 0.98 |
2210 | 2718 | 3.649073 | TGGAATGCACGTCCGATTATAG | 58.351 | 45.455 | 12.46 | 0.00 | 38.06 | 1.31 |
2211 | 2719 | 3.069016 | TGGAATGCACGTCCGATTATAGT | 59.931 | 43.478 | 12.46 | 0.00 | 38.06 | 2.12 |
2212 | 2720 | 4.278919 | TGGAATGCACGTCCGATTATAGTA | 59.721 | 41.667 | 12.46 | 0.00 | 38.06 | 1.82 |
2213 | 2721 | 4.620184 | GGAATGCACGTCCGATTATAGTAC | 59.380 | 45.833 | 2.59 | 0.00 | 0.00 | 2.73 |
2214 | 2722 | 5.449107 | AATGCACGTCCGATTATAGTACT | 57.551 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
2215 | 2723 | 4.478843 | TGCACGTCCGATTATAGTACTC | 57.521 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2216 | 2724 | 3.251729 | TGCACGTCCGATTATAGTACTCC | 59.748 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
2217 | 2725 | 3.365767 | GCACGTCCGATTATAGTACTCCC | 60.366 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2218 | 2726 | 4.070716 | CACGTCCGATTATAGTACTCCCT | 58.929 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
2219 | 2727 | 4.153835 | CACGTCCGATTATAGTACTCCCTC | 59.846 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2220 | 2728 | 3.688673 | CGTCCGATTATAGTACTCCCTCC | 59.311 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2221 | 2729 | 3.688673 | GTCCGATTATAGTACTCCCTCCG | 59.311 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
2222 | 2730 | 3.328931 | TCCGATTATAGTACTCCCTCCGT | 59.671 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
2223 | 2731 | 3.688673 | CCGATTATAGTACTCCCTCCGTC | 59.311 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
2224 | 2732 | 3.688673 | CGATTATAGTACTCCCTCCGTCC | 59.311 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
2225 | 2733 | 3.515602 | TTATAGTACTCCCTCCGTCCC | 57.484 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
2226 | 2734 | 1.229131 | ATAGTACTCCCTCCGTCCCA | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2227 | 2735 | 1.229131 | TAGTACTCCCTCCGTCCCAT | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2228 | 2736 | 1.229131 | AGTACTCCCTCCGTCCCATA | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2229 | 2737 | 1.572415 | AGTACTCCCTCCGTCCCATAA | 59.428 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
2230 | 2738 | 2.179424 | AGTACTCCCTCCGTCCCATAAT | 59.821 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2231 | 2739 | 3.400322 | AGTACTCCCTCCGTCCCATAATA | 59.600 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
2232 | 2740 | 3.562108 | ACTCCCTCCGTCCCATAATAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
2233 | 2741 | 4.687262 | ACTCCCTCCGTCCCATAATATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
2234 | 2742 | 5.019657 | ACTCCCTCCGTCCCATAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
2235 | 2743 | 5.024118 | ACTCCCTCCGTCCCATAATATAAG | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
2236 | 2744 | 4.359105 | TCCCTCCGTCCCATAATATAAGG | 58.641 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
2237 | 2745 | 4.046231 | TCCCTCCGTCCCATAATATAAGGA | 59.954 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
2238 | 2746 | 4.161754 | CCCTCCGTCCCATAATATAAGGAC | 59.838 | 50.000 | 10.16 | 10.16 | 44.42 | 3.85 |
2246 | 2754 | 8.441312 | GTCCCATAATATAAGGACGTTTTTGA | 57.559 | 34.615 | 6.05 | 0.00 | 39.47 | 2.69 |
2247 | 2755 | 8.340443 | GTCCCATAATATAAGGACGTTTTTGAC | 58.660 | 37.037 | 6.05 | 0.00 | 39.47 | 3.18 |
2248 | 2756 | 8.047911 | TCCCATAATATAAGGACGTTTTTGACA | 58.952 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
2249 | 2757 | 8.846211 | CCCATAATATAAGGACGTTTTTGACAT | 58.154 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2255 | 2763 | 7.739498 | ATAAGGACGTTTTTGACATTAGTGT | 57.261 | 32.000 | 0.00 | 0.00 | 42.49 | 3.55 |
2256 | 2764 | 8.836268 | ATAAGGACGTTTTTGACATTAGTGTA | 57.164 | 30.769 | 0.00 | 0.00 | 39.09 | 2.90 |
2257 | 2765 | 6.780706 | AGGACGTTTTTGACATTAGTGTAG | 57.219 | 37.500 | 0.00 | 0.00 | 39.09 | 2.74 |
2258 | 2766 | 6.285990 | AGGACGTTTTTGACATTAGTGTAGT | 58.714 | 36.000 | 0.00 | 0.00 | 39.09 | 2.73 |
2259 | 2767 | 6.202188 | AGGACGTTTTTGACATTAGTGTAGTG | 59.798 | 38.462 | 0.00 | 0.00 | 39.09 | 2.74 |
2260 | 2768 | 6.018507 | GGACGTTTTTGACATTAGTGTAGTGT | 60.019 | 38.462 | 0.00 | 0.00 | 39.09 | 3.55 |
2261 | 2769 | 6.940714 | ACGTTTTTGACATTAGTGTAGTGTC | 58.059 | 36.000 | 0.00 | 3.35 | 43.31 | 3.67 |
2269 | 2777 | 6.913873 | ACATTAGTGTAGTGTCAAAAACGT | 57.086 | 33.333 | 0.00 | 0.00 | 36.63 | 3.99 |
2270 | 2778 | 7.311364 | ACATTAGTGTAGTGTCAAAAACGTT | 57.689 | 32.000 | 0.00 | 0.00 | 36.63 | 3.99 |
2271 | 2779 | 7.404203 | ACATTAGTGTAGTGTCAAAAACGTTC | 58.596 | 34.615 | 0.00 | 0.00 | 36.63 | 3.95 |
2272 | 2780 | 7.279313 | ACATTAGTGTAGTGTCAAAAACGTTCT | 59.721 | 33.333 | 0.00 | 0.00 | 36.63 | 3.01 |
2273 | 2781 | 7.599630 | TTAGTGTAGTGTCAAAAACGTTCTT | 57.400 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2274 | 2782 | 8.700722 | TTAGTGTAGTGTCAAAAACGTTCTTA | 57.299 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
2275 | 2783 | 7.781548 | AGTGTAGTGTCAAAAACGTTCTTAT | 57.218 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2276 | 2784 | 8.876275 | AGTGTAGTGTCAAAAACGTTCTTATA | 57.124 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
2277 | 2785 | 9.485206 | AGTGTAGTGTCAAAAACGTTCTTATAT | 57.515 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
2286 | 2794 | 9.919348 | TCAAAAACGTTCTTATATTATAACCGC | 57.081 | 29.630 | 0.00 | 0.00 | 0.00 | 5.68 |
2287 | 2795 | 9.705471 | CAAAAACGTTCTTATATTATAACCGCA | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 5.69 |
2311 | 2819 | 4.632538 | AAAGAAAACGTTGGACAGAAGG | 57.367 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
2312 | 2820 | 3.553828 | AGAAAACGTTGGACAGAAGGA | 57.446 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
2313 | 2821 | 3.467803 | AGAAAACGTTGGACAGAAGGAG | 58.532 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
2314 | 2822 | 3.118371 | AGAAAACGTTGGACAGAAGGAGT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2327 | 2835 | 8.204836 | TGGACAGAAGGAGTAATATTTAAGAGC | 58.795 | 37.037 | 0.00 | 0.00 | 0.00 | 4.09 |
2331 | 2839 | 7.169982 | CAGAAGGAGTAATATTTAAGAGCCACG | 59.830 | 40.741 | 0.00 | 0.00 | 0.00 | 4.94 |
2334 | 2842 | 5.701290 | GGAGTAATATTTAAGAGCCACGCAT | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 4.73 |
2335 | 2843 | 6.128526 | GGAGTAATATTTAAGAGCCACGCATC | 60.129 | 42.308 | 0.00 | 0.00 | 0.00 | 3.91 |
2352 | 2860 | 5.565259 | CACGCATCTCACAAGTGAATTTAAC | 59.435 | 40.000 | 4.29 | 0.00 | 39.39 | 2.01 |
2400 | 2914 | 3.502123 | AATCAAAAGGTGTCGAAGGGA | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 4.20 |
2447 | 2961 | 6.091076 | AGACAATTATTTTGGGATGGAGGA | 57.909 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
2452 | 2966 | 7.342026 | ACAATTATTTTGGGATGGAGGAAGTAC | 59.658 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2461 | 2975 | 7.313731 | TGGGATGGAGGAAGTACTTATTAGAT | 58.686 | 38.462 | 8.42 | 0.00 | 0.00 | 1.98 |
2476 | 2990 | 8.494016 | ACTTATTAGATTGAGTTAGGTGTTGC | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
2526 | 3042 | 3.529533 | TGTTGATTTGCAGTTTGGTTGG | 58.470 | 40.909 | 0.00 | 0.00 | 0.00 | 3.77 |
2601 | 3121 | 4.572985 | TTCAGCTCACAAATCACTTTGG | 57.427 | 40.909 | 3.42 | 0.00 | 44.97 | 3.28 |
2625 | 3145 | 3.621558 | CCTCCCTCACCCTAAAATGAAC | 58.378 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2626 | 3146 | 3.010138 | CCTCCCTCACCCTAAAATGAACA | 59.990 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 3.165071 | CCTCACCAAAAGCAACCCTTAT | 58.835 | 45.455 | 0.00 | 0.00 | 32.20 | 1.73 |
23 | 24 | 1.609072 | GACTCCTCACCAAAAGCAACC | 59.391 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
59 | 61 | 1.228245 | GGCAAGTGGGCAGTGAAGA | 60.228 | 57.895 | 0.00 | 0.00 | 42.77 | 2.87 |
105 | 107 | 7.237055 | ACTTGTGGGTAGAGGTAGATTAAAAGT | 59.763 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
106 | 108 | 7.549488 | CACTTGTGGGTAGAGGTAGATTAAAAG | 59.451 | 40.741 | 0.00 | 0.00 | 0.00 | 2.27 |
121 | 123 | 7.655732 | CGAACATATTCATATCACTTGTGGGTA | 59.344 | 37.037 | 0.64 | 0.00 | 34.14 | 3.69 |
123 | 125 | 6.705825 | TCGAACATATTCATATCACTTGTGGG | 59.294 | 38.462 | 0.64 | 0.00 | 34.14 | 4.61 |
124 | 126 | 7.713764 | TCGAACATATTCATATCACTTGTGG | 57.286 | 36.000 | 0.64 | 0.00 | 34.14 | 4.17 |
136 | 138 | 9.917129 | TCACTAACTAGTTTTCGAACATATTCA | 57.083 | 29.630 | 14.49 | 0.00 | 33.46 | 2.57 |
139 | 141 | 9.790389 | CTCTCACTAACTAGTTTTCGAACATAT | 57.210 | 33.333 | 14.49 | 0.00 | 33.46 | 1.78 |
140 | 142 | 8.790718 | ACTCTCACTAACTAGTTTTCGAACATA | 58.209 | 33.333 | 14.49 | 0.00 | 33.46 | 2.29 |
141 | 143 | 7.595502 | CACTCTCACTAACTAGTTTTCGAACAT | 59.404 | 37.037 | 14.49 | 0.00 | 33.46 | 2.71 |
142 | 144 | 6.916387 | CACTCTCACTAACTAGTTTTCGAACA | 59.084 | 38.462 | 14.49 | 0.00 | 33.46 | 3.18 |
143 | 145 | 6.916932 | ACACTCTCACTAACTAGTTTTCGAAC | 59.083 | 38.462 | 14.49 | 0.00 | 33.46 | 3.95 |
144 | 146 | 7.035840 | ACACTCTCACTAACTAGTTTTCGAA | 57.964 | 36.000 | 14.49 | 0.00 | 33.46 | 3.71 |
145 | 147 | 6.630444 | ACACTCTCACTAACTAGTTTTCGA | 57.370 | 37.500 | 14.49 | 6.88 | 33.46 | 3.71 |
146 | 148 | 7.697291 | GGATACACTCTCACTAACTAGTTTTCG | 59.303 | 40.741 | 14.49 | 5.64 | 33.46 | 3.46 |
147 | 149 | 7.975058 | GGGATACACTCTCACTAACTAGTTTTC | 59.025 | 40.741 | 14.49 | 0.00 | 33.44 | 2.29 |
148 | 150 | 7.453752 | TGGGATACACTCTCACTAACTAGTTTT | 59.546 | 37.037 | 14.49 | 0.00 | 33.44 | 2.43 |
149 | 151 | 6.952358 | TGGGATACACTCTCACTAACTAGTTT | 59.048 | 38.462 | 14.49 | 0.00 | 33.44 | 2.66 |
150 | 152 | 6.491383 | TGGGATACACTCTCACTAACTAGTT | 58.509 | 40.000 | 13.68 | 13.68 | 33.44 | 2.24 |
151 | 153 | 6.075949 | TGGGATACACTCTCACTAACTAGT | 57.924 | 41.667 | 0.00 | 0.00 | 35.65 | 2.57 |
152 | 154 | 6.603997 | ACTTGGGATACACTCTCACTAACTAG | 59.396 | 42.308 | 0.00 | 0.00 | 32.70 | 2.57 |
153 | 155 | 6.491383 | ACTTGGGATACACTCTCACTAACTA | 58.509 | 40.000 | 0.00 | 0.00 | 32.70 | 2.24 |
154 | 156 | 5.334421 | ACTTGGGATACACTCTCACTAACT | 58.666 | 41.667 | 0.00 | 0.00 | 32.70 | 2.24 |
155 | 157 | 5.662674 | ACTTGGGATACACTCTCACTAAC | 57.337 | 43.478 | 0.00 | 0.00 | 32.70 | 2.34 |
156 | 158 | 5.778241 | TCAACTTGGGATACACTCTCACTAA | 59.222 | 40.000 | 0.00 | 0.00 | 32.70 | 2.24 |
157 | 159 | 5.330233 | TCAACTTGGGATACACTCTCACTA | 58.670 | 41.667 | 0.00 | 0.00 | 32.70 | 2.74 |
158 | 160 | 4.160329 | TCAACTTGGGATACACTCTCACT | 58.840 | 43.478 | 0.00 | 0.00 | 32.70 | 3.41 |
159 | 161 | 4.537135 | TCAACTTGGGATACACTCTCAC | 57.463 | 45.455 | 0.00 | 0.00 | 32.70 | 3.51 |
160 | 162 | 4.593206 | ACTTCAACTTGGGATACACTCTCA | 59.407 | 41.667 | 0.00 | 0.00 | 39.74 | 3.27 |
161 | 163 | 5.046950 | AGACTTCAACTTGGGATACACTCTC | 60.047 | 44.000 | 0.00 | 0.00 | 39.74 | 3.20 |
162 | 164 | 4.841246 | AGACTTCAACTTGGGATACACTCT | 59.159 | 41.667 | 0.00 | 0.00 | 39.74 | 3.24 |
166 | 168 | 4.838423 | TCTGAGACTTCAACTTGGGATACA | 59.162 | 41.667 | 0.00 | 0.00 | 32.28 | 2.29 |
168 | 170 | 5.129485 | GGATCTGAGACTTCAACTTGGGATA | 59.871 | 44.000 | 0.00 | 0.00 | 31.69 | 2.59 |
192 | 194 | 7.883229 | AAAGTAAAGCCCAAATTTTCATACG | 57.117 | 32.000 | 0.00 | 0.00 | 0.00 | 3.06 |
217 | 219 | 6.701400 | GTCATTACAAGTGTTTGAAATGGCTT | 59.299 | 34.615 | 3.21 | 0.00 | 37.73 | 4.35 |
218 | 220 | 6.215845 | GTCATTACAAGTGTTTGAAATGGCT | 58.784 | 36.000 | 3.21 | 0.00 | 37.73 | 4.75 |
226 | 228 | 8.568732 | AAAAATACGGTCATTACAAGTGTTTG | 57.431 | 30.769 | 0.00 | 0.00 | 40.24 | 2.93 |
242 | 244 | 9.524106 | AGAACTTTCCTTTTGTTAAAAATACGG | 57.476 | 29.630 | 0.00 | 0.00 | 34.81 | 4.02 |
345 | 348 | 1.972872 | CACTCAAAGACTGTGGGCTT | 58.027 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
353 | 356 | 3.859961 | CGTATCGATTGCACTCAAAGACT | 59.140 | 43.478 | 1.71 | 0.00 | 35.56 | 3.24 |
433 | 436 | 9.911788 | AGTAGAAAAATGAATCTCATACACCAT | 57.088 | 29.630 | 0.00 | 0.00 | 35.76 | 3.55 |
487 | 494 | 3.499737 | ACAATAGCTGCCGCACGC | 61.500 | 61.111 | 2.05 | 6.68 | 39.10 | 5.34 |
488 | 495 | 1.431488 | ATCACAATAGCTGCCGCACG | 61.431 | 55.000 | 2.05 | 0.00 | 39.10 | 5.34 |
498 | 505 | 9.978044 | TCAGAGTTCAATATCTGATCACAATAG | 57.022 | 33.333 | 0.90 | 0.00 | 45.31 | 1.73 |
542 | 549 | 3.805971 | TGCATCATCGAGTGATTCACATC | 59.194 | 43.478 | 18.57 | 11.57 | 45.25 | 3.06 |
563 | 570 | 0.183731 | GGAATACCCCTTGGCCTCTG | 59.816 | 60.000 | 3.32 | 0.00 | 33.59 | 3.35 |
629 | 641 | 5.416326 | ACCTATCATCGAGGAATAGCACTAC | 59.584 | 44.000 | 2.91 | 0.00 | 37.53 | 2.73 |
686 | 698 | 2.034179 | CCAGGGACAAAAACCGTTCTTC | 59.966 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
690 | 702 | 1.478916 | CAACCAGGGACAAAAACCGTT | 59.521 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
702 | 714 | 2.231235 | GTGCAAAGATAACCAACCAGGG | 59.769 | 50.000 | 0.00 | 0.00 | 43.89 | 4.45 |
956 | 968 | 0.670162 | CACTTGTGGTTGGGCTGAAG | 59.330 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
964 | 976 | 1.518056 | ATGCCGAGCACTTGTGGTTG | 61.518 | 55.000 | 11.93 | 11.93 | 43.04 | 3.77 |
967 | 979 | 0.729116 | CTTATGCCGAGCACTTGTGG | 59.271 | 55.000 | 0.50 | 0.00 | 43.04 | 4.17 |
1116 | 1128 | 2.914097 | AACTTGGCCTGCACCTGC | 60.914 | 61.111 | 3.32 | 0.00 | 42.50 | 4.85 |
1432 | 1454 | 1.604308 | CCTGCAGCCCATGACAACA | 60.604 | 57.895 | 8.66 | 0.00 | 0.00 | 3.33 |
1617 | 1639 | 0.039437 | GGAGAACGACGAGCAAGTGA | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1623 | 1645 | 0.108804 | TGGAATGGAGAACGACGAGC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1811 | 1851 | 0.249073 | CATAGCCTGGGTCGACGAAG | 60.249 | 60.000 | 9.92 | 9.21 | 0.00 | 3.79 |
1937 | 2441 | 9.196552 | CTCGCTCATACTCATACATAATCAAAA | 57.803 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
1969 | 2473 | 6.376018 | GGTAGTGACATCTCAACTAACTCTCT | 59.624 | 42.308 | 0.00 | 0.00 | 0.00 | 3.10 |
2053 | 2557 | 3.670898 | AGGAGATCCTGCCATCCTT | 57.329 | 52.632 | 0.00 | 0.00 | 46.55 | 3.36 |
2190 | 2698 | 3.650139 | ACTATAATCGGACGTGCATTCC | 58.350 | 45.455 | 8.11 | 7.17 | 0.00 | 3.01 |
2199 | 2707 | 3.688673 | CGGAGGGAGTACTATAATCGGAC | 59.311 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
2202 | 2710 | 3.688673 | GGACGGAGGGAGTACTATAATCG | 59.311 | 52.174 | 0.00 | 0.54 | 0.00 | 3.34 |
2203 | 2711 | 4.015764 | GGGACGGAGGGAGTACTATAATC | 58.984 | 52.174 | 0.00 | 0.00 | 0.00 | 1.75 |
2204 | 2712 | 3.400322 | TGGGACGGAGGGAGTACTATAAT | 59.600 | 47.826 | 0.00 | 0.00 | 0.00 | 1.28 |
2206 | 2714 | 2.421725 | TGGGACGGAGGGAGTACTATA | 58.578 | 52.381 | 0.00 | 0.00 | 0.00 | 1.31 |
2207 | 2715 | 1.229131 | TGGGACGGAGGGAGTACTAT | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2208 | 2716 | 1.229131 | ATGGGACGGAGGGAGTACTA | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2209 | 2717 | 1.229131 | TATGGGACGGAGGGAGTACT | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2210 | 2718 | 2.077687 | TTATGGGACGGAGGGAGTAC | 57.922 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2211 | 2719 | 4.687262 | ATATTATGGGACGGAGGGAGTA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2212 | 2720 | 3.562108 | ATATTATGGGACGGAGGGAGT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2213 | 2721 | 4.406003 | CCTTATATTATGGGACGGAGGGAG | 59.594 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2214 | 2722 | 4.046231 | TCCTTATATTATGGGACGGAGGGA | 59.954 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
2215 | 2723 | 4.161754 | GTCCTTATATTATGGGACGGAGGG | 59.838 | 50.000 | 11.96 | 0.00 | 38.77 | 4.30 |
2216 | 2724 | 5.340439 | GTCCTTATATTATGGGACGGAGG | 57.660 | 47.826 | 11.96 | 0.00 | 38.77 | 4.30 |
2221 | 2729 | 8.340443 | GTCAAAAACGTCCTTATATTATGGGAC | 58.660 | 37.037 | 15.08 | 15.08 | 43.22 | 4.46 |
2222 | 2730 | 8.047911 | TGTCAAAAACGTCCTTATATTATGGGA | 58.952 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
2223 | 2731 | 8.215926 | TGTCAAAAACGTCCTTATATTATGGG | 57.784 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
2229 | 2737 | 9.444600 | ACACTAATGTCAAAAACGTCCTTATAT | 57.555 | 29.630 | 0.00 | 0.00 | 31.55 | 0.86 |
2230 | 2738 | 8.836268 | ACACTAATGTCAAAAACGTCCTTATA | 57.164 | 30.769 | 0.00 | 0.00 | 31.55 | 0.98 |
2231 | 2739 | 7.739498 | ACACTAATGTCAAAAACGTCCTTAT | 57.261 | 32.000 | 0.00 | 0.00 | 31.55 | 1.73 |
2232 | 2740 | 7.927629 | ACTACACTAATGTCAAAAACGTCCTTA | 59.072 | 33.333 | 0.00 | 0.00 | 40.48 | 2.69 |
2233 | 2741 | 6.764560 | ACTACACTAATGTCAAAAACGTCCTT | 59.235 | 34.615 | 0.00 | 0.00 | 40.48 | 3.36 |
2234 | 2742 | 6.202188 | CACTACACTAATGTCAAAAACGTCCT | 59.798 | 38.462 | 0.00 | 0.00 | 40.48 | 3.85 |
2235 | 2743 | 6.018507 | ACACTACACTAATGTCAAAAACGTCC | 60.019 | 38.462 | 0.00 | 0.00 | 40.48 | 4.79 |
2236 | 2744 | 6.940714 | ACACTACACTAATGTCAAAAACGTC | 58.059 | 36.000 | 0.00 | 0.00 | 40.48 | 4.34 |
2237 | 2745 | 6.913873 | ACACTACACTAATGTCAAAAACGT | 57.086 | 33.333 | 0.00 | 0.00 | 40.48 | 3.99 |
2245 | 2753 | 6.940714 | ACGTTTTTGACACTACACTAATGTC | 58.059 | 36.000 | 0.00 | 0.00 | 42.54 | 3.06 |
2246 | 2754 | 6.913873 | ACGTTTTTGACACTACACTAATGT | 57.086 | 33.333 | 0.00 | 0.00 | 43.30 | 2.71 |
2247 | 2755 | 7.627340 | AGAACGTTTTTGACACTACACTAATG | 58.373 | 34.615 | 0.46 | 0.00 | 0.00 | 1.90 |
2248 | 2756 | 7.781548 | AGAACGTTTTTGACACTACACTAAT | 57.218 | 32.000 | 0.46 | 0.00 | 0.00 | 1.73 |
2249 | 2757 | 7.599630 | AAGAACGTTTTTGACACTACACTAA | 57.400 | 32.000 | 0.46 | 0.00 | 0.00 | 2.24 |
2250 | 2758 | 8.876275 | ATAAGAACGTTTTTGACACTACACTA | 57.124 | 30.769 | 13.87 | 0.00 | 0.00 | 2.74 |
2251 | 2759 | 7.781548 | ATAAGAACGTTTTTGACACTACACT | 57.218 | 32.000 | 13.87 | 0.00 | 0.00 | 3.55 |
2260 | 2768 | 9.919348 | GCGGTTATAATATAAGAACGTTTTTGA | 57.081 | 29.630 | 13.87 | 2.81 | 0.00 | 2.69 |
2261 | 2769 | 9.705471 | TGCGGTTATAATATAAGAACGTTTTTG | 57.295 | 29.630 | 13.87 | 0.00 | 0.00 | 2.44 |
2288 | 2796 | 5.184287 | TCCTTCTGTCCAACGTTTTCTTTTT | 59.816 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2289 | 2797 | 4.703093 | TCCTTCTGTCCAACGTTTTCTTTT | 59.297 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
2290 | 2798 | 4.266714 | TCCTTCTGTCCAACGTTTTCTTT | 58.733 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2291 | 2799 | 3.877508 | CTCCTTCTGTCCAACGTTTTCTT | 59.122 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2292 | 2800 | 3.118371 | ACTCCTTCTGTCCAACGTTTTCT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2293 | 2801 | 3.203716 | ACTCCTTCTGTCCAACGTTTTC | 58.796 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
2294 | 2802 | 3.277142 | ACTCCTTCTGTCCAACGTTTT | 57.723 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
2295 | 2803 | 4.411256 | TTACTCCTTCTGTCCAACGTTT | 57.589 | 40.909 | 0.00 | 0.00 | 0.00 | 3.60 |
2296 | 2804 | 4.618920 | ATTACTCCTTCTGTCCAACGTT | 57.381 | 40.909 | 0.00 | 0.00 | 0.00 | 3.99 |
2297 | 2805 | 5.934402 | ATATTACTCCTTCTGTCCAACGT | 57.066 | 39.130 | 0.00 | 0.00 | 0.00 | 3.99 |
2298 | 2806 | 8.712285 | TTAAATATTACTCCTTCTGTCCAACG | 57.288 | 34.615 | 0.00 | 0.00 | 0.00 | 4.10 |
2299 | 2807 | 9.886132 | TCTTAAATATTACTCCTTCTGTCCAAC | 57.114 | 33.333 | 0.00 | 0.00 | 0.00 | 3.77 |
2301 | 2809 | 8.204836 | GCTCTTAAATATTACTCCTTCTGTCCA | 58.795 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
2302 | 2810 | 7.658167 | GGCTCTTAAATATTACTCCTTCTGTCC | 59.342 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
2303 | 2811 | 8.204836 | TGGCTCTTAAATATTACTCCTTCTGTC | 58.795 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2304 | 2812 | 7.988028 | GTGGCTCTTAAATATTACTCCTTCTGT | 59.012 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2305 | 2813 | 7.169982 | CGTGGCTCTTAAATATTACTCCTTCTG | 59.830 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
2306 | 2814 | 7.210873 | CGTGGCTCTTAAATATTACTCCTTCT | 58.789 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
2307 | 2815 | 6.073711 | GCGTGGCTCTTAAATATTACTCCTTC | 60.074 | 42.308 | 0.00 | 0.00 | 0.00 | 3.46 |
2308 | 2816 | 5.758784 | GCGTGGCTCTTAAATATTACTCCTT | 59.241 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2309 | 2817 | 5.163343 | TGCGTGGCTCTTAAATATTACTCCT | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2310 | 2818 | 5.054477 | TGCGTGGCTCTTAAATATTACTCC | 58.946 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2311 | 2819 | 6.647067 | AGATGCGTGGCTCTTAAATATTACTC | 59.353 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2312 | 2820 | 6.525629 | AGATGCGTGGCTCTTAAATATTACT | 58.474 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2313 | 2821 | 6.423905 | TGAGATGCGTGGCTCTTAAATATTAC | 59.576 | 38.462 | 0.00 | 0.00 | 32.44 | 1.89 |
2314 | 2822 | 6.423905 | GTGAGATGCGTGGCTCTTAAATATTA | 59.576 | 38.462 | 0.00 | 0.00 | 32.44 | 0.98 |
2327 | 2835 | 1.511850 | TTCACTTGTGAGATGCGTGG | 58.488 | 50.000 | 3.61 | 0.00 | 0.00 | 4.94 |
2331 | 2839 | 9.624697 | TTATTGTTAAATTCACTTGTGAGATGC | 57.375 | 29.630 | 3.61 | 0.00 | 0.00 | 3.91 |
2352 | 2860 | 9.626045 | GGAACCTTCTGTTTTGTTATCTTATTG | 57.374 | 33.333 | 0.00 | 0.00 | 37.29 | 1.90 |
2365 | 2879 | 6.070251 | ACCTTTTGATTTGGAACCTTCTGTTT | 60.070 | 34.615 | 0.00 | 0.00 | 37.29 | 2.83 |
2400 | 2914 | 2.661176 | TTGGGATGGAGGGAGTACTT | 57.339 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2452 | 2966 | 8.723942 | AGCAACACCTAACTCAATCTAATAAG | 57.276 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
2461 | 2975 | 4.444536 | ACGTTTAGCAACACCTAACTCAA | 58.555 | 39.130 | 0.00 | 0.00 | 32.54 | 3.02 |
2476 | 2990 | 2.288458 | TCCGCAAAAACTGGACGTTTAG | 59.712 | 45.455 | 0.00 | 0.00 | 44.77 | 1.85 |
2535 | 3051 | 6.000219 | CCACTACCTAAATATGCAGCTCAAT | 59.000 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2536 | 3052 | 5.368145 | CCACTACCTAAATATGCAGCTCAA | 58.632 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2537 | 3053 | 4.202357 | CCCACTACCTAAATATGCAGCTCA | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
2539 | 3055 | 3.973973 | TCCCACTACCTAAATATGCAGCT | 59.026 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
2540 | 3056 | 4.351874 | TCCCACTACCTAAATATGCAGC | 57.648 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
2541 | 3057 | 6.591935 | TCTTTCCCACTACCTAAATATGCAG | 58.408 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2542 | 3058 | 6.569127 | TCTTTCCCACTACCTAAATATGCA | 57.431 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
2601 | 3121 | 1.665137 | TTTTAGGGTGAGGGAGGGAC | 58.335 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2625 | 3145 | 4.122776 | CCAAGAATAACGAGATCACCCTG | 58.877 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
2626 | 3146 | 3.775316 | ACCAAGAATAACGAGATCACCCT | 59.225 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.