Multiple sequence alignment - TraesCS3B01G185400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G185400 chr3B 100.000 4371 0 0 1 4371 201342777 201338407 0.000000e+00 8072
1 TraesCS3B01G185400 chr3D 96.696 3692 104 12 528 4214 138195434 138191756 0.000000e+00 6126
2 TraesCS3B01G185400 chr3D 92.652 313 1 6 193 485 138198456 138198146 8.680000e-117 431
3 TraesCS3B01G185400 chr3D 93.007 143 10 0 4225 4367 138191774 138191632 4.430000e-50 209
4 TraesCS3B01G185400 chr3A 97.826 2668 52 4 1212 3874 156270445 156267779 0.000000e+00 4601
5 TraesCS3B01G185400 chr3A 90.589 1222 43 24 1 1197 156271904 156270730 0.000000e+00 1554
6 TraesCS3B01G185400 chr3A 92.481 266 13 3 3953 4215 156267771 156267510 1.480000e-99 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G185400 chr3B 201338407 201342777 4370 True 8072.000000 8072 100.000000 1 4371 1 chr3B.!!$R1 4370
1 TraesCS3B01G185400 chr3D 138191632 138198456 6824 True 2255.333333 6126 94.118333 193 4367 3 chr3D.!!$R1 4174
2 TraesCS3B01G185400 chr3A 156267510 156271904 4394 True 2176.333333 4601 93.632000 1 4215 3 chr3A.!!$R1 4214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 1.061729 CGAGCACACACACGCAAAA 59.938 52.632 0.0 0.0 0.00 2.44 F
490 516 1.076632 GAGGAAGGAGAGGGCGAGA 60.077 63.158 0.0 0.0 0.00 4.04 F
1459 4436 0.804989 AGGCAATAGACGCAGCAAAC 59.195 50.000 0.0 0.0 0.00 2.93 F
2878 5855 0.033991 GGAAGAGGGGAAGAAAGCCC 60.034 60.000 0.0 0.0 45.25 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 4419 0.521291 TGGTTTGCTGCGTCTATTGC 59.479 50.0 0.0 0.0 0.00 3.56 R
2284 5261 0.037590 TGTGACCATTTCCTTCCCGG 59.962 55.0 0.0 0.0 0.00 5.73 R
2890 5867 0.883814 CATGATTCAGCGGCTCCTCC 60.884 60.0 0.0 0.0 0.00 4.30 R
4321 7304 0.314935 ATTGGTTTCAAGCTGCCACG 59.685 50.0 0.0 0.0 36.19 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.454106 GGATAGCTAAGTACGATCGGTTTATAA 58.546 37.037 20.98 4.21 0.00 0.98
57 58 9.784680 ATAGCTAAGTACGATCGGTTTATAATG 57.215 33.333 20.98 4.57 0.00 1.90
60 61 9.778993 GCTAAGTACGATCGGTTTATAATGATA 57.221 33.333 20.98 0.00 0.00 2.15
153 154 2.104253 CGCATAAACCCGTCGGCTT 61.104 57.895 5.50 3.86 0.00 4.35
155 156 2.003672 CATAAACCCGTCGGCTTCG 58.996 57.895 5.50 0.00 0.00 3.79
156 157 1.153509 ATAAACCCGTCGGCTTCGG 60.154 57.895 5.50 9.63 46.49 4.30
157 158 3.938019 TAAACCCGTCGGCTTCGGC 62.938 63.158 5.50 0.00 45.71 5.54
160 161 4.867599 CCCGTCGGCTTCGGCTAC 62.868 72.222 5.50 0.00 45.71 3.58
161 162 4.124351 CCGTCGGCTTCGGCTACA 62.124 66.667 0.00 0.00 41.48 2.74
162 163 2.879462 CGTCGGCTTCGGCTACAC 60.879 66.667 0.00 0.00 41.44 2.90
163 164 2.879462 GTCGGCTTCGGCTACACG 60.879 66.667 0.00 0.00 41.44 4.49
164 165 4.789075 TCGGCTTCGGCTACACGC 62.789 66.667 0.00 0.00 41.44 5.34
166 167 4.789075 GGCTTCGGCTACACGCGA 62.789 66.667 15.93 0.00 41.44 5.87
167 168 3.248171 GCTTCGGCTACACGCGAG 61.248 66.667 15.93 7.88 40.44 5.03
168 169 3.248171 CTTCGGCTACACGCGAGC 61.248 66.667 15.93 12.15 40.44 5.03
190 191 2.049156 CGAAGCGAGCACACTGGA 60.049 61.111 0.00 0.00 0.00 3.86
191 192 2.375766 CGAAGCGAGCACACTGGAC 61.376 63.158 0.00 0.00 0.00 4.02
219 220 4.046998 GACGCGAGCACACACACG 62.047 66.667 15.93 0.00 0.00 4.49
223 224 2.706432 CGAGCACACACACGCAAA 59.294 55.556 0.00 0.00 0.00 3.68
224 225 1.061729 CGAGCACACACACGCAAAA 59.938 52.632 0.00 0.00 0.00 2.44
226 227 1.202348 GAGCACACACACGCAAAAGC 61.202 55.000 0.00 0.00 0.00 3.51
227 228 2.567151 GCACACACACGCAAAAGCG 61.567 57.895 8.45 8.45 39.31 4.68
408 434 4.806339 CCGCCTTCCCTCCCTCCT 62.806 72.222 0.00 0.00 0.00 3.69
409 435 2.689034 CGCCTTCCCTCCCTCCTT 60.689 66.667 0.00 0.00 0.00 3.36
490 516 1.076632 GAGGAAGGAGAGGGCGAGA 60.077 63.158 0.00 0.00 0.00 4.04
834 3530 4.148825 CCGTGGCCGAGAAGAGGG 62.149 72.222 0.00 0.00 35.63 4.30
946 3642 4.273480 AGGCACGATTTCGGATTAGAATTG 59.727 41.667 4.84 0.00 44.95 2.32
984 3680 4.546570 GGCAACTAAAATAATCGGATGCC 58.453 43.478 0.00 0.00 43.31 4.40
985 3681 4.278419 GGCAACTAAAATAATCGGATGCCT 59.722 41.667 5.75 0.00 45.55 4.75
986 3682 5.215160 GCAACTAAAATAATCGGATGCCTG 58.785 41.667 0.00 0.00 0.00 4.85
987 3683 5.215160 CAACTAAAATAATCGGATGCCTGC 58.785 41.667 0.00 0.00 0.00 4.85
1101 3801 9.800433 TTGCCTCATTTACATGTGTATTTATTG 57.200 29.630 9.11 0.00 0.00 1.90
1103 3803 7.113404 GCCTCATTTACATGTGTATTTATTGCG 59.887 37.037 9.11 0.00 0.00 4.85
1184 3886 8.572185 TGATAAGTTAGACTGATCTGTCATAGC 58.428 37.037 28.06 19.44 37.07 2.97
1187 3889 8.526667 AAGTTAGACTGATCTGTCATAGCTTA 57.473 34.615 28.06 12.41 39.27 3.09
1235 4207 5.091910 GCTTAATATGGTAAGCGGTGAAC 57.908 43.478 3.92 0.00 44.71 3.18
1301 4273 5.174943 CGAATTTTTGCTTACAGTTTGGGAC 59.825 40.000 0.00 0.00 0.00 4.46
1345 4317 3.010420 GGAATGGTGGTTCAGAGCTTAC 58.990 50.000 0.00 0.00 0.00 2.34
1386 4358 1.578897 TCCCTGTAGCCATAAGTGCA 58.421 50.000 0.00 0.00 0.00 4.57
1442 4419 2.356125 CCACCCTGATGAGTTTGGTAGG 60.356 54.545 0.00 0.00 0.00 3.18
1459 4436 0.804989 AGGCAATAGACGCAGCAAAC 59.195 50.000 0.00 0.00 0.00 2.93
1465 4442 3.764885 ATAGACGCAGCAAACCATTTC 57.235 42.857 0.00 0.00 0.00 2.17
1675 4652 1.572085 CTGAGGGTCTTGTTGCTGCG 61.572 60.000 0.00 0.00 0.00 5.18
2017 4994 3.853831 TCTATGTACTTCGCGTTTCCA 57.146 42.857 5.77 0.00 0.00 3.53
2284 5261 5.880332 TGGCAATAAGGATATAATTCCGAGC 59.120 40.000 0.00 0.00 40.94 5.03
2878 5855 0.033991 GGAAGAGGGGAAGAAAGCCC 60.034 60.000 0.00 0.00 45.25 5.19
2947 5924 0.693049 GGAGGGAGAAGCTCAACCAA 59.307 55.000 0.00 0.00 31.08 3.67
2977 5954 1.598130 GTTGAGAGCCGTTGTGCCT 60.598 57.895 0.00 0.00 0.00 4.75
3007 5984 1.681229 AAATGGACAAGGCCTCCCTA 58.319 50.000 5.23 0.00 41.90 3.53
3025 6002 2.430465 CTATTGGGCGATGCAATAGCT 58.570 47.619 10.47 0.00 44.90 3.32
3310 6287 1.203441 TCATCAAGTGCCCTGGCTCT 61.203 55.000 9.97 8.37 45.34 4.09
3317 6294 1.842920 TGCCCTGGCTCTGAACAGA 60.843 57.895 9.97 4.45 42.51 3.41
3482 6459 5.105877 TGTTGATAGAAGTTGTAGGTCGAGG 60.106 44.000 0.00 0.00 0.00 4.63
3708 6685 6.707608 GCCTTTTCTTTGTTCAAATCCTTGAT 59.292 34.615 0.00 0.00 41.22 2.57
3746 6723 6.670695 AATAACTCTGGGCAATTTTCTGTT 57.329 33.333 0.00 0.00 0.00 3.16
3839 6816 6.918569 ACGTTGGTCTTGATCTAATTCTATCG 59.081 38.462 0.00 0.00 0.00 2.92
3874 6852 6.467723 TCGCTTGTTCTGTAGAAATTCTTC 57.532 37.500 0.00 0.00 35.58 2.87
3973 6953 8.600449 TTATTTGGCCAGATTTTGTAACTTTG 57.400 30.769 14.91 0.00 0.00 2.77
4007 6987 3.662759 TTCCAGGGGCGAAATTTAGAT 57.337 42.857 2.11 0.00 0.00 1.98
4076 7059 7.127042 CGCTAGTAATTCTGTACACAGTCTAG 58.873 42.308 9.11 13.04 44.12 2.43
4133 7116 5.843421 AGAATAGCTTGATCAGTGTATCCCT 59.157 40.000 0.00 0.00 0.00 4.20
4136 7119 3.900601 AGCTTGATCAGTGTATCCCTAGG 59.099 47.826 0.06 0.06 0.00 3.02
4166 7149 3.244422 TGTCCTACTCGGCAAATGAGTTT 60.244 43.478 0.49 0.00 44.00 2.66
4215 7198 1.609208 ACACCTGATGCCAGTTTGTC 58.391 50.000 0.00 0.00 38.74 3.18
4216 7199 1.133823 ACACCTGATGCCAGTTTGTCA 60.134 47.619 0.00 0.00 38.74 3.58
4217 7200 1.955778 CACCTGATGCCAGTTTGTCAA 59.044 47.619 0.00 0.00 38.74 3.18
4218 7201 2.361757 CACCTGATGCCAGTTTGTCAAA 59.638 45.455 0.00 0.00 38.74 2.69
4219 7202 3.030291 ACCTGATGCCAGTTTGTCAAAA 58.970 40.909 0.00 0.00 38.74 2.44
4220 7203 3.450457 ACCTGATGCCAGTTTGTCAAAAA 59.550 39.130 0.00 0.00 38.74 1.94
4242 7225 3.457610 AAAACACCTGATGCCAGTTTG 57.542 42.857 0.00 0.00 38.74 2.93
4243 7226 2.071778 AACACCTGATGCCAGTTTGT 57.928 45.000 0.00 0.00 38.74 2.83
4244 7227 1.609208 ACACCTGATGCCAGTTTGTC 58.391 50.000 0.00 0.00 38.74 3.18
4343 7326 1.340889 TGGCAGCTTGAAACCAATCAC 59.659 47.619 0.00 0.00 0.00 3.06
4361 7344 0.108019 ACCACCCTGGAAACTTCGAC 59.892 55.000 0.00 0.00 40.96 4.20
4364 7347 2.143925 CACCCTGGAAACTTCGACTTC 58.856 52.381 0.00 0.00 0.00 3.01
4369 7352 3.762407 TGGAAACTTCGACTTCCATGA 57.238 42.857 15.52 0.00 44.87 3.07
4370 7353 4.286297 TGGAAACTTCGACTTCCATGAT 57.714 40.909 15.52 0.00 44.87 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.058224 CCTCAGTGGATCAAACGTTTTCC 60.058 47.826 20.28 20.28 38.35 3.13
9 10 3.813166 TCCTCAGTGGATCAAACGTTTTC 59.187 43.478 11.66 7.50 40.56 2.29
10 11 3.815809 TCCTCAGTGGATCAAACGTTTT 58.184 40.909 11.66 0.00 40.56 2.43
122 123 0.094558 TTATGCGCGCTTTCGTTCTG 59.905 50.000 33.29 0.00 38.14 3.02
169 170 3.832171 GTGTGCTCGCTTCGCTCG 61.832 66.667 0.00 0.00 0.00 5.03
170 171 2.431601 AGTGTGCTCGCTTCGCTC 60.432 61.111 0.00 0.00 0.00 5.03
171 172 2.736236 CAGTGTGCTCGCTTCGCT 60.736 61.111 0.00 0.00 31.46 4.93
172 173 3.782244 CCAGTGTGCTCGCTTCGC 61.782 66.667 0.00 0.00 31.46 4.70
173 174 2.049156 TCCAGTGTGCTCGCTTCG 60.049 61.111 0.00 0.00 31.46 3.79
174 175 2.029844 GGTCCAGTGTGCTCGCTTC 61.030 63.158 0.00 0.00 31.46 3.86
175 176 2.031163 GGTCCAGTGTGCTCGCTT 59.969 61.111 0.00 0.00 31.46 4.68
176 177 4.363990 CGGTCCAGTGTGCTCGCT 62.364 66.667 0.00 0.00 34.45 4.93
177 178 4.357947 TCGGTCCAGTGTGCTCGC 62.358 66.667 0.00 0.00 0.00 5.03
178 179 2.126307 CTCGGTCCAGTGTGCTCG 60.126 66.667 0.00 0.00 0.00 5.03
179 180 2.433318 GCTCGGTCCAGTGTGCTC 60.433 66.667 0.00 0.00 0.00 4.26
180 181 4.008933 GGCTCGGTCCAGTGTGCT 62.009 66.667 0.00 0.00 0.00 4.40
182 183 3.633094 CTCGGCTCGGTCCAGTGTG 62.633 68.421 0.00 0.00 0.00 3.82
183 184 3.374402 CTCGGCTCGGTCCAGTGT 61.374 66.667 0.00 0.00 0.00 3.55
184 185 4.803426 GCTCGGCTCGGTCCAGTG 62.803 72.222 0.00 0.00 0.00 3.66
219 220 1.370900 CCAGTGTGCTCGCTTTTGC 60.371 57.895 0.00 0.00 43.23 3.68
220 221 1.283793 CCCAGTGTGCTCGCTTTTG 59.716 57.895 0.00 0.00 31.46 2.44
223 224 3.890936 GAGCCCAGTGTGCTCGCTT 62.891 63.158 11.96 0.00 45.05 4.68
224 225 4.385405 GAGCCCAGTGTGCTCGCT 62.385 66.667 11.96 0.00 45.05 4.93
254 258 4.323562 GCTGCCTCCTTTCCTTTTCTACTA 60.324 45.833 0.00 0.00 0.00 1.82
677 3372 6.127423 GCTACTACTGTTAGTGAGGGAATTCA 60.127 42.308 7.93 0.00 39.06 2.57
775 3470 0.749649 CCGCCTAACTCAGCTCATCT 59.250 55.000 0.00 0.00 0.00 2.90
834 3530 3.507622 AGATTCCAGCCTAAACAAACAGC 59.492 43.478 0.00 0.00 0.00 4.40
946 3642 0.530744 TGCCCGAGTACACATGACTC 59.469 55.000 0.00 0.79 40.02 3.36
984 3680 0.601558 GCATTCCTATGGCATGGCAG 59.398 55.000 27.02 14.35 32.15 4.85
985 3681 2.736197 GCATTCCTATGGCATGGCA 58.264 52.632 25.52 25.52 32.15 4.92
1045 3741 5.625311 GGAATCATGTGACAGAAAACGTTTC 59.375 40.000 15.01 8.08 0.00 2.78
1101 3801 1.797025 AGGAAACTAAGACAGTGCGC 58.203 50.000 0.00 0.00 40.61 6.09
1202 3904 8.293699 CTTACCATATTAAGCAGTCCCTTTTT 57.706 34.615 0.00 0.00 0.00 1.94
1214 4186 5.120399 TGGTTCACCGCTTACCATATTAAG 58.880 41.667 0.00 0.00 37.04 1.85
1220 4192 0.981183 TCTGGTTCACCGCTTACCAT 59.019 50.000 0.00 0.00 40.89 3.55
1235 4207 3.890147 ACTTAGTAGCGGTATCCTTCTGG 59.110 47.826 0.00 0.00 0.00 3.86
1301 4273 2.349438 GGTAAACACACACTGACATGCG 60.349 50.000 0.00 0.00 0.00 4.73
1345 4317 8.197439 AGGGATGAACTTAAAACAAAACAGAAG 58.803 33.333 0.00 0.00 0.00 2.85
1421 4394 2.356125 CCTACCAAACTCATCAGGGTGG 60.356 54.545 0.00 0.00 34.98 4.61
1442 4419 0.521291 TGGTTTGCTGCGTCTATTGC 59.479 50.000 0.00 0.00 0.00 3.56
1459 4436 7.542130 GTCAAAAGGCACTAAATACAGAAATGG 59.458 37.037 0.00 0.00 38.49 3.16
1465 4442 5.705441 TCAGGTCAAAAGGCACTAAATACAG 59.295 40.000 0.00 0.00 38.49 2.74
1675 4652 1.222115 GCAAGTCCACAGGTGACGAC 61.222 60.000 0.00 1.15 0.00 4.34
2284 5261 0.037590 TGTGACCATTTCCTTCCCGG 59.962 55.000 0.00 0.00 0.00 5.73
2287 5264 4.335416 TCTCAATGTGACCATTTCCTTCC 58.665 43.478 0.00 0.00 39.28 3.46
2385 5362 4.191544 TGGCCTTTCATCTACTTTCGATG 58.808 43.478 3.32 0.00 39.62 3.84
2878 5855 1.153086 CTCCTCCCTCCCATTTGCG 60.153 63.158 0.00 0.00 0.00 4.85
2881 5858 2.378634 CGGCTCCTCCCTCCCATTT 61.379 63.158 0.00 0.00 0.00 2.32
2890 5867 0.883814 CATGATTCAGCGGCTCCTCC 60.884 60.000 0.00 0.00 0.00 4.30
2947 5924 1.736032 GCTCTCAACGCATAGAACCGT 60.736 52.381 0.00 0.00 39.70 4.83
2977 5954 4.394920 GCCTTGTCCATTTTCGAGATGTTA 59.605 41.667 9.22 0.00 0.00 2.41
3007 5984 1.696063 AAGCTATTGCATCGCCCAAT 58.304 45.000 1.12 0.00 42.74 3.16
3025 6002 6.419484 TTCTTCTGAAGGTCAGTGATGTAA 57.581 37.500 16.83 0.00 44.58 2.41
3310 6287 3.830744 TTCTCCCTCGTTTTCTGTTCA 57.169 42.857 0.00 0.00 0.00 3.18
3317 6294 3.253432 GCAATCACTTTCTCCCTCGTTTT 59.747 43.478 0.00 0.00 0.00 2.43
3443 6420 7.020827 TCTATCAACAGAATGGAAGGTTTCT 57.979 36.000 0.00 0.00 43.62 2.52
3482 6459 2.082231 TCAGAAATCTCAGCTTGCTGC 58.918 47.619 16.91 0.00 43.29 5.25
3708 6685 2.242708 AGTTATTAATCCACCGGCCCAA 59.757 45.455 0.00 0.00 0.00 4.12
3874 6852 3.136009 TGGCAGCTAATCATCTCATGG 57.864 47.619 0.00 0.00 0.00 3.66
3973 6953 3.243737 CCCCTGGAAACAAAAAGCAGTAC 60.244 47.826 0.00 0.00 42.06 2.73
4007 6987 7.244886 TCTTAGAATCAGTGGATGACTTTCA 57.755 36.000 0.00 0.00 41.91 2.69
4133 7116 4.142790 CCGAGTAGGACATTAAGCTCCTA 58.857 47.826 6.78 6.78 45.00 2.94
4136 7119 2.100916 TGCCGAGTAGGACATTAAGCTC 59.899 50.000 0.00 0.00 45.00 4.09
4166 7149 7.142680 GTGGATAAGAAAATCGTTCAAACCAA 58.857 34.615 0.00 0.00 0.00 3.67
4221 7204 3.197549 ACAAACTGGCATCAGGTGTTTTT 59.802 39.130 0.00 0.00 40.66 1.94
4222 7205 2.765699 ACAAACTGGCATCAGGTGTTTT 59.234 40.909 0.00 0.00 40.66 2.43
4223 7206 2.362077 GACAAACTGGCATCAGGTGTTT 59.638 45.455 0.00 0.00 40.66 2.83
4224 7207 1.956477 GACAAACTGGCATCAGGTGTT 59.044 47.619 0.00 0.00 40.66 3.32
4225 7208 1.609208 GACAAACTGGCATCAGGTGT 58.391 50.000 0.00 0.00 40.66 4.16
4226 7209 0.518636 CGACAAACTGGCATCAGGTG 59.481 55.000 0.00 0.00 40.66 4.00
4227 7210 0.396435 TCGACAAACTGGCATCAGGT 59.604 50.000 0.00 0.00 44.02 4.00
4228 7211 1.081892 CTCGACAAACTGGCATCAGG 58.918 55.000 0.00 0.00 44.99 3.86
4229 7212 2.084610 TCTCGACAAACTGGCATCAG 57.915 50.000 0.00 0.00 46.10 2.90
4230 7213 2.542020 TTCTCGACAAACTGGCATCA 57.458 45.000 0.00 0.00 0.00 3.07
4231 7214 3.896648 TTTTCTCGACAAACTGGCATC 57.103 42.857 0.00 0.00 0.00 3.91
4232 7215 4.853924 AATTTTCTCGACAAACTGGCAT 57.146 36.364 0.00 0.00 0.00 4.40
4233 7216 4.338118 AGAAATTTTCTCGACAAACTGGCA 59.662 37.500 5.82 0.00 34.07 4.92
4234 7217 4.860072 AGAAATTTTCTCGACAAACTGGC 58.140 39.130 5.82 0.00 34.07 4.85
4235 7218 6.265577 ACAAGAAATTTTCTCGACAAACTGG 58.734 36.000 11.92 0.00 39.61 4.00
4236 7219 7.698130 AGAACAAGAAATTTTCTCGACAAACTG 59.302 33.333 11.92 6.84 39.61 3.16
4237 7220 7.762382 AGAACAAGAAATTTTCTCGACAAACT 58.238 30.769 11.92 4.01 39.61 2.66
4238 7221 7.165977 GGAGAACAAGAAATTTTCTCGACAAAC 59.834 37.037 11.92 2.89 44.19 2.93
4239 7222 7.193595 GGAGAACAAGAAATTTTCTCGACAAA 58.806 34.615 11.92 0.00 44.19 2.83
4240 7223 6.511121 CGGAGAACAAGAAATTTTCTCGACAA 60.511 38.462 11.92 0.00 44.19 3.18
4241 7224 5.050363 CGGAGAACAAGAAATTTTCTCGACA 60.050 40.000 11.92 0.00 44.19 4.35
4242 7225 5.374898 CGGAGAACAAGAAATTTTCTCGAC 58.625 41.667 11.92 5.19 44.19 4.20
4243 7226 4.451096 CCGGAGAACAAGAAATTTTCTCGA 59.549 41.667 11.92 0.00 44.19 4.04
4244 7227 4.213482 ACCGGAGAACAAGAAATTTTCTCG 59.787 41.667 9.46 3.86 44.19 4.04
4304 7287 8.254508 AGCTGCCACGGAATTATTTTAATTTTA 58.745 29.630 0.00 0.00 0.00 1.52
4310 7293 4.702612 TCAAGCTGCCACGGAATTATTTTA 59.297 37.500 0.00 0.00 0.00 1.52
4321 7304 0.314935 ATTGGTTTCAAGCTGCCACG 59.685 50.000 0.00 0.00 36.19 4.94
4343 7326 0.396811 AGTCGAAGTTTCCAGGGTGG 59.603 55.000 0.00 0.00 39.43 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.