Multiple sequence alignment - TraesCS3B01G185300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G185300 chr3B 100.000 3946 0 0 1001 4946 201322592 201318647 0.000000e+00 7287.0
1 TraesCS3B01G185300 chr3B 100.000 507 0 0 1 507 201323592 201323086 0.000000e+00 937.0
2 TraesCS3B01G185300 chr3D 96.708 3919 100 15 1001 4909 138090083 138086184 0.000000e+00 6495.0
3 TraesCS3B01G185300 chr3D 92.991 214 12 3 295 507 138090339 138090128 4.810000e-80 309.0
4 TraesCS3B01G185300 chr3D 91.270 126 8 2 3 127 138090891 138090768 8.510000e-38 169.0
5 TraesCS3B01G185300 chr3D 100.000 37 0 0 194 230 138090396 138090360 8.880000e-08 69.4
6 TraesCS3B01G185300 chr3A 96.727 3605 97 9 1001 4602 156244198 156240612 0.000000e+00 5984.0
7 TraesCS3B01G185300 chr3A 94.688 320 12 3 4593 4909 156239693 156239376 4.450000e-135 492.0
8 TraesCS3B01G185300 chr3A 92.138 318 14 10 194 506 156244555 156244244 5.880000e-119 438.0
9 TraesCS3B01G185300 chr3A 85.876 177 20 4 1 176 156244818 156244646 3.040000e-42 183.0
10 TraesCS3B01G185300 chr5D 86.261 575 64 7 3527 4088 3241443 3240871 1.180000e-170 610.0
11 TraesCS3B01G185300 chr5D 82.680 612 73 22 1001 1608 2585046 2585628 3.410000e-141 512.0
12 TraesCS3B01G185300 chr5D 82.324 611 77 19 1001 1607 3250511 3249928 7.390000e-138 501.0
13 TraesCS3B01G185300 chr5D 89.457 313 30 1 2799 3108 3241767 3241455 4.640000e-105 392.0
14 TraesCS3B01G185300 chr2A 90.945 254 18 4 4656 4908 378007607 378007856 2.210000e-88 337.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G185300 chr3B 201318647 201323592 4945 True 4112.00 7287 100.00000 1 4946 2 chr3B.!!$R1 4945
1 TraesCS3B01G185300 chr3D 138086184 138090891 4707 True 1760.60 6495 95.24225 3 4909 4 chr3D.!!$R1 4906
2 TraesCS3B01G185300 chr3A 156239376 156244818 5442 True 1774.25 5984 92.35725 1 4909 4 chr3A.!!$R1 4908
3 TraesCS3B01G185300 chr5D 2585046 2585628 582 False 512.00 512 82.68000 1001 1608 1 chr5D.!!$F1 607
4 TraesCS3B01G185300 chr5D 3240871 3241767 896 True 501.00 610 87.85900 2799 4088 2 chr5D.!!$R2 1289
5 TraesCS3B01G185300 chr5D 3249928 3250511 583 True 501.00 501 82.32400 1001 1607 1 chr5D.!!$R1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 614 0.251073 TTTGCCGGACTACCCTTAGC 59.749 55.000 5.05 0.0 0.00 3.09 F
428 796 0.467290 CCTCTCTTCCTCTCTCCCCG 60.467 65.000 0.00 0.0 0.00 5.73 F
1413 1786 0.763652 AGTCGCTCCTCCCGTCTATA 59.236 55.000 0.00 0.0 0.00 1.31 F
2541 2914 0.396435 TGACAAGGTTCCTGACGCAT 59.604 50.000 0.00 0.0 0.00 4.73 F
2931 3304 1.227823 TGGTGAACAAGACCCAGCG 60.228 57.895 0.00 0.0 31.84 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2235 2608 0.037303 CCAACATCTGCTGGACCTGT 59.963 55.000 0.00 0.0 33.20 4.00 R
2319 2692 0.935898 CAGGCTTCTGCATAAGAGCG 59.064 55.000 15.47 0.0 41.91 5.03 R
3049 3425 0.251386 TTCTGCGAGAGAGGTGGTCT 60.251 55.000 0.00 0.0 38.71 3.85 R
3816 4201 0.251341 AAAGCGAGGCCAAGGATGTT 60.251 50.000 5.01 0.0 0.00 2.71 R
4289 4680 1.141657 GGAATAGGACATGCAGCAGGA 59.858 52.381 15.39 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.906105 TACGGTCTGCCCCAACCATC 61.906 60.000 0.00 0.00 35.13 3.51
32 33 2.763215 GGTCTGCCCCAACCATCA 59.237 61.111 0.00 0.00 35.53 3.07
169 462 7.136772 GCGATAACATTAGTATTTTTGGACCC 58.863 38.462 0.00 0.00 0.00 4.46
243 609 2.285977 CAATACTTTGCCGGACTACCC 58.714 52.381 5.05 0.00 0.00 3.69
244 610 1.875488 ATACTTTGCCGGACTACCCT 58.125 50.000 5.05 0.00 0.00 4.34
245 611 1.648116 TACTTTGCCGGACTACCCTT 58.352 50.000 5.05 0.00 0.00 3.95
246 612 1.648116 ACTTTGCCGGACTACCCTTA 58.352 50.000 5.05 0.00 0.00 2.69
247 613 1.553704 ACTTTGCCGGACTACCCTTAG 59.446 52.381 5.05 0.00 0.00 2.18
248 614 0.251073 TTTGCCGGACTACCCTTAGC 59.749 55.000 5.05 0.00 0.00 3.09
249 615 0.616679 TTGCCGGACTACCCTTAGCT 60.617 55.000 5.05 0.00 0.00 3.32
250 616 1.041447 TGCCGGACTACCCTTAGCTC 61.041 60.000 5.05 0.00 0.00 4.09
251 617 0.756070 GCCGGACTACCCTTAGCTCT 60.756 60.000 5.05 0.00 0.00 4.09
256 624 3.376636 GGACTACCCTTAGCTCTCCTTT 58.623 50.000 0.00 0.00 0.00 3.11
306 674 2.162338 CTACCTCGTCACGGCCCAAA 62.162 60.000 0.00 0.00 0.00 3.28
309 677 1.241315 CCTCGTCACGGCCCAAATTT 61.241 55.000 0.00 0.00 0.00 1.82
345 713 1.816835 GTCGTCCCCCTTTCCATTTTC 59.183 52.381 0.00 0.00 0.00 2.29
354 722 1.540435 TTTCCATTTTCCCCCTGCGC 61.540 55.000 0.00 0.00 0.00 6.09
428 796 0.467290 CCTCTCTTCCTCTCTCCCCG 60.467 65.000 0.00 0.00 0.00 5.73
432 800 1.758906 CTTCCTCTCTCCCCGACCC 60.759 68.421 0.00 0.00 0.00 4.46
433 801 3.657038 TTCCTCTCTCCCCGACCCG 62.657 68.421 0.00 0.00 0.00 5.28
434 802 4.124943 CCTCTCTCCCCGACCCGA 62.125 72.222 0.00 0.00 0.00 5.14
435 803 2.829458 CTCTCTCCCCGACCCGAC 60.829 72.222 0.00 0.00 0.00 4.79
436 804 4.437587 TCTCTCCCCGACCCGACC 62.438 72.222 0.00 0.00 0.00 4.79
1410 1783 2.438795 GAGTCGCTCCTCCCGTCT 60.439 66.667 0.00 0.00 0.00 4.18
1413 1786 0.763652 AGTCGCTCCTCCCGTCTATA 59.236 55.000 0.00 0.00 0.00 1.31
1968 2341 2.667536 CAGCTTGCCGTGACTGCT 60.668 61.111 0.00 0.00 0.00 4.24
2052 2425 5.706833 TGCAATGAAACAGATATGTGACAGT 59.293 36.000 6.90 0.98 0.00 3.55
2106 2479 2.087646 GATGAGGAGTTGTTTGAGGGC 58.912 52.381 0.00 0.00 0.00 5.19
2319 2692 5.230306 GGACGCTGCGATATATCTTGTTATC 59.770 44.000 30.47 9.91 0.00 1.75
2379 2752 1.625315 CCTGTGGTTGACATGGAGAGA 59.375 52.381 0.00 0.00 32.74 3.10
2499 2872 2.173569 GGATCAGATACCCAAAGCCACT 59.826 50.000 0.00 0.00 0.00 4.00
2541 2914 0.396435 TGACAAGGTTCCTGACGCAT 59.604 50.000 0.00 0.00 0.00 4.73
2580 2953 5.413833 CCATTCCTATGCTGCGATCTTTATT 59.586 40.000 0.00 0.00 0.00 1.40
2823 3196 2.159421 TGAGATAACCGCTCGTCTTGTC 60.159 50.000 0.00 0.00 35.15 3.18
2931 3304 1.227823 TGGTGAACAAGACCCAGCG 60.228 57.895 0.00 0.00 31.84 5.18
3049 3425 2.544277 GCACAGCTTGTCAATTTGAGCA 60.544 45.455 10.59 5.18 37.59 4.26
3279 3655 5.244755 TCTGCATTCTACATGCTTAACACA 58.755 37.500 8.22 0.00 44.79 3.72
3816 4201 4.365514 TGATCCAAAGCAGTTTCTGGTA 57.634 40.909 1.96 0.00 41.59 3.25
3831 4216 0.251916 TGGTAACATCCTTGGCCTCG 59.748 55.000 3.32 0.00 46.17 4.63
3939 4324 2.886523 TGCTGCCTATAATGCCAACATC 59.113 45.455 0.00 0.00 34.62 3.06
3950 4335 3.520290 TGCCAACATCGTCTAGGTAAG 57.480 47.619 0.00 0.00 0.00 2.34
3951 4336 2.202566 GCCAACATCGTCTAGGTAAGC 58.797 52.381 0.00 0.00 0.00 3.09
4024 4409 1.341531 ACGTGTCCTCAAAGTCTGGAG 59.658 52.381 0.00 0.00 0.00 3.86
4065 4455 4.326009 GGTACAAGTTTGTTTGCTGTGTTG 59.674 41.667 2.46 0.00 42.35 3.33
4103 4493 1.002468 ACACACAATTCGCTGAGCAAC 60.002 47.619 4.88 0.00 0.00 4.17
4289 4680 8.919145 TGGTTAAACATTCAGGTCAAAAATACT 58.081 29.630 0.00 0.00 0.00 2.12
4421 4812 2.749800 GCCTGGAAATGGGAGGTATCAC 60.750 54.545 0.00 0.00 0.00 3.06
4540 4934 7.166691 AGAAGCTGCACATTAGATTTTTCAT 57.833 32.000 1.02 0.00 0.00 2.57
4554 4948 9.519191 TTAGATTTTTCATTCCATTCAGACTCA 57.481 29.630 0.00 0.00 0.00 3.41
4555 4949 8.413309 AGATTTTTCATTCCATTCAGACTCAA 57.587 30.769 0.00 0.00 0.00 3.02
4556 4950 8.863086 AGATTTTTCATTCCATTCAGACTCAAA 58.137 29.630 0.00 0.00 0.00 2.69
4557 4951 9.480053 GATTTTTCATTCCATTCAGACTCAAAA 57.520 29.630 0.00 0.00 0.00 2.44
4579 4973 5.799827 AATCTTACCAGATAGGAGCAGAC 57.200 43.478 0.00 0.00 39.00 3.51
4583 4977 1.365633 CAGATAGGAGCAGACCGCC 59.634 63.158 0.00 0.00 44.04 6.13
4596 4990 1.344763 AGACCGCCATATAGTGCCTTC 59.655 52.381 0.00 0.00 0.00 3.46
4654 5976 4.299586 TGCATGGTCTAACTGGATTTCA 57.700 40.909 0.00 0.00 0.00 2.69
4655 5977 4.858850 TGCATGGTCTAACTGGATTTCAT 58.141 39.130 0.00 0.00 0.00 2.57
4803 6128 8.842358 TTTGGGACAGAAAAGTAGTAATGTAG 57.158 34.615 0.00 0.00 42.39 2.74
4880 6205 7.604164 AGTTCTGTCTGACTATTTGTGGTAATG 59.396 37.037 9.51 0.00 0.00 1.90
4882 6207 7.676004 TCTGTCTGACTATTTGTGGTAATGAA 58.324 34.615 9.51 0.00 0.00 2.57
4909 6234 5.989477 TGGTGTTAAGTAGAATCTCCATGG 58.011 41.667 4.97 4.97 0.00 3.66
4910 6235 5.724370 TGGTGTTAAGTAGAATCTCCATGGA 59.276 40.000 15.27 15.27 0.00 3.41
4911 6236 6.127054 TGGTGTTAAGTAGAATCTCCATGGAG 60.127 42.308 32.60 32.60 43.21 3.86
4912 6237 6.127026 GGTGTTAAGTAGAATCTCCATGGAGT 60.127 42.308 35.34 21.50 42.49 3.85
4913 6238 7.069578 GGTGTTAAGTAGAATCTCCATGGAGTA 59.930 40.741 35.34 24.21 42.49 2.59
4914 6239 8.643324 GTGTTAAGTAGAATCTCCATGGAGTAT 58.357 37.037 35.34 26.36 42.49 2.12
4915 6240 8.642432 TGTTAAGTAGAATCTCCATGGAGTATG 58.358 37.037 35.34 16.16 42.49 2.39
4916 6241 5.736951 AGTAGAATCTCCATGGAGTATGC 57.263 43.478 35.34 25.67 42.49 3.14
4917 6242 5.150715 AGTAGAATCTCCATGGAGTATGCA 58.849 41.667 35.34 20.20 44.23 3.96
4918 6243 4.620589 AGAATCTCCATGGAGTATGCAG 57.379 45.455 35.34 14.36 42.42 4.41
4919 6244 4.229639 AGAATCTCCATGGAGTATGCAGA 58.770 43.478 35.34 19.00 42.42 4.26
4920 6245 4.657504 AGAATCTCCATGGAGTATGCAGAA 59.342 41.667 35.34 18.11 42.42 3.02
4921 6246 3.827008 TCTCCATGGAGTATGCAGAAC 57.173 47.619 35.34 0.00 42.42 3.01
4922 6247 3.378512 TCTCCATGGAGTATGCAGAACT 58.621 45.455 35.34 4.25 42.42 3.01
4923 6248 3.776969 TCTCCATGGAGTATGCAGAACTT 59.223 43.478 35.34 0.00 42.42 2.66
4924 6249 4.225942 TCTCCATGGAGTATGCAGAACTTT 59.774 41.667 35.34 0.00 42.42 2.66
4925 6250 4.922206 TCCATGGAGTATGCAGAACTTTT 58.078 39.130 11.44 0.00 42.42 2.27
4926 6251 4.943705 TCCATGGAGTATGCAGAACTTTTC 59.056 41.667 11.44 1.52 42.42 2.29
4927 6252 4.096984 CCATGGAGTATGCAGAACTTTTCC 59.903 45.833 5.56 4.41 42.42 3.13
4928 6253 4.640771 TGGAGTATGCAGAACTTTTCCT 57.359 40.909 6.00 0.00 0.00 3.36
4929 6254 4.326826 TGGAGTATGCAGAACTTTTCCTG 58.673 43.478 6.00 0.00 0.00 3.86
4930 6255 4.041567 TGGAGTATGCAGAACTTTTCCTGA 59.958 41.667 6.00 0.00 32.37 3.86
4931 6256 4.633565 GGAGTATGCAGAACTTTTCCTGAG 59.366 45.833 6.00 0.00 32.37 3.35
4932 6257 5.482908 GAGTATGCAGAACTTTTCCTGAGA 58.517 41.667 6.00 0.00 32.37 3.27
4933 6258 5.869579 AGTATGCAGAACTTTTCCTGAGAA 58.130 37.500 0.00 0.00 32.37 2.87
4934 6259 5.936956 AGTATGCAGAACTTTTCCTGAGAAG 59.063 40.000 0.00 0.00 32.35 2.85
4935 6260 3.480470 TGCAGAACTTTTCCTGAGAAGG 58.520 45.455 2.94 0.00 32.35 3.46
4936 6261 2.816672 GCAGAACTTTTCCTGAGAAGGG 59.183 50.000 2.94 0.00 32.35 3.95
4937 6262 3.748989 GCAGAACTTTTCCTGAGAAGGGT 60.749 47.826 2.94 0.00 32.35 4.34
4938 6263 4.464947 CAGAACTTTTCCTGAGAAGGGTT 58.535 43.478 2.94 0.00 33.91 4.11
4939 6264 4.889995 CAGAACTTTTCCTGAGAAGGGTTT 59.110 41.667 2.94 0.00 32.48 3.27
4940 6265 5.360999 CAGAACTTTTCCTGAGAAGGGTTTT 59.639 40.000 2.94 0.00 32.48 2.43
4941 6266 5.360999 AGAACTTTTCCTGAGAAGGGTTTTG 59.639 40.000 2.94 0.00 32.48 2.44
4942 6267 3.960755 ACTTTTCCTGAGAAGGGTTTTGG 59.039 43.478 2.94 0.00 32.35 3.28
4943 6268 3.963476 TTTCCTGAGAAGGGTTTTGGA 57.037 42.857 0.00 0.00 32.35 3.53
4944 6269 4.469469 TTTCCTGAGAAGGGTTTTGGAT 57.531 40.909 0.00 0.00 32.35 3.41
4945 6270 3.721087 TCCTGAGAAGGGTTTTGGATC 57.279 47.619 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.739825 TCTGATGAATATTTAGGTCTTCCCTG 58.260 38.462 0.00 0.00 45.81 4.45
32 33 8.781951 TTTCTGATGAATATTTAGGTCTTCCCT 58.218 33.333 0.00 0.00 38.50 4.20
139 141 7.360361 CAAAAATACTAATGTTATCGCCCCTC 58.640 38.462 0.00 0.00 0.00 4.30
145 431 8.215926 TGGGTCCAAAAATACTAATGTTATCG 57.784 34.615 0.00 0.00 0.00 2.92
169 462 2.787249 CGTCGCCATGGCTTCTTG 59.213 61.111 33.07 18.02 39.32 3.02
306 674 2.667473 CGAGAGGGTCGGTGTTAAAT 57.333 50.000 0.00 0.00 45.58 1.40
354 722 0.171231 TGAGTGCTGGTTCGATCGAG 59.829 55.000 18.54 7.82 0.00 4.04
1410 1783 3.397482 GTTACCGAGCGAGGAGACTATA 58.603 50.000 7.50 0.00 44.43 1.31
1413 1786 1.367599 CGTTACCGAGCGAGGAGACT 61.368 60.000 7.50 0.00 39.45 3.24
1644 2017 3.098555 CACTCAAATACGGGGCGC 58.901 61.111 0.00 0.00 0.00 6.53
1968 2341 4.927425 GCGACTGTTGTCAAGAACCTTATA 59.073 41.667 0.00 0.00 43.06 0.98
2052 2425 1.028905 GCAGGTTAGGCACAACAACA 58.971 50.000 4.67 0.00 0.00 3.33
2082 2455 3.604582 CTCAAACAACTCCTCATCCTCC 58.395 50.000 0.00 0.00 0.00 4.30
2106 2479 3.282021 CCTGACATATTCCACCCAGTTG 58.718 50.000 0.00 0.00 0.00 3.16
2187 2560 3.534056 TAGTTCGCGGCTAGCCCC 61.534 66.667 28.09 18.64 44.76 5.80
2223 2596 2.234661 CTGGACCTGTGCTGATACAAGA 59.765 50.000 0.00 0.00 0.00 3.02
2235 2608 0.037303 CCAACATCTGCTGGACCTGT 59.963 55.000 0.00 0.00 33.20 4.00
2319 2692 0.935898 CAGGCTTCTGCATAAGAGCG 59.064 55.000 15.47 0.00 41.91 5.03
2379 2752 4.491676 GCACAATCACAGATGCAAAGAAT 58.508 39.130 0.00 0.00 38.00 2.40
2499 2872 0.686789 TTGGAAGCAGAGCTAGTGCA 59.313 50.000 19.85 0.00 43.82 4.57
2580 2953 1.351076 TGGTGATCAGCAGGTTCTCA 58.649 50.000 23.20 0.00 34.41 3.27
2823 3196 1.399440 CACACTTCCATCAGAATGCCG 59.601 52.381 0.00 0.00 34.76 5.69
2931 3304 2.691011 TGCCTCAAACAAAGGTACCAAC 59.309 45.455 15.94 0.00 36.21 3.77
3049 3425 0.251386 TTCTGCGAGAGAGGTGGTCT 60.251 55.000 0.00 0.00 38.71 3.85
3279 3655 5.068591 GTCCAAACCAACATTTTCCACTAGT 59.931 40.000 0.00 0.00 0.00 2.57
3816 4201 0.251341 AAAGCGAGGCCAAGGATGTT 60.251 50.000 5.01 0.00 0.00 2.71
3831 4216 3.621953 AGGAGACTGTGCAGAAAGC 57.378 52.632 6.17 0.00 41.13 3.51
3939 4324 3.678548 GGAACAAGTTGCTTACCTAGACG 59.321 47.826 1.81 0.00 0.00 4.18
3950 4335 2.357952 AGAACGGAAAGGAACAAGTTGC 59.642 45.455 1.81 0.00 0.00 4.17
3951 4336 4.632538 AAGAACGGAAAGGAACAAGTTG 57.367 40.909 0.00 0.00 0.00 3.16
4017 4402 4.836825 TGAATGACTTTCATCCTCCAGAC 58.163 43.478 0.00 0.00 39.44 3.51
4065 4455 3.572255 TGTGTTTTAAATGACAGGGAGGC 59.428 43.478 0.00 0.00 0.00 4.70
4178 4569 3.129638 GTGTTTAAACCACAGGTGCAAGA 59.870 43.478 15.59 0.00 35.34 3.02
4289 4680 1.141657 GGAATAGGACATGCAGCAGGA 59.858 52.381 15.39 0.00 0.00 3.86
4355 4746 6.924111 ACACTGAACACAGAAGTTTGAAAAT 58.076 32.000 0.00 0.00 35.80 1.82
4456 4847 7.404671 AACTAAAACACAGAACCATGAAGTT 57.595 32.000 0.00 0.00 0.00 2.66
4464 4855 5.355910 TCACTGGAAACTAAAACACAGAACC 59.644 40.000 0.00 0.00 0.00 3.62
4540 4934 7.723616 TGGTAAGATTTTTGAGTCTGAATGGAA 59.276 33.333 0.00 0.00 0.00 3.53
4552 4946 6.957631 TGCTCCTATCTGGTAAGATTTTTGA 58.042 36.000 0.00 0.00 40.42 2.69
4553 4947 7.011857 GTCTGCTCCTATCTGGTAAGATTTTTG 59.988 40.741 0.00 0.00 40.42 2.44
4554 4948 7.051000 GTCTGCTCCTATCTGGTAAGATTTTT 58.949 38.462 0.00 0.00 40.42 1.94
4555 4949 6.408662 GGTCTGCTCCTATCTGGTAAGATTTT 60.409 42.308 0.00 0.00 40.42 1.82
4556 4950 5.071115 GGTCTGCTCCTATCTGGTAAGATTT 59.929 44.000 0.00 0.00 40.42 2.17
4557 4951 4.591072 GGTCTGCTCCTATCTGGTAAGATT 59.409 45.833 0.00 0.00 40.42 2.40
4583 4977 6.987386 AGCAAGTAGTAGAAGGCACTATATG 58.013 40.000 0.00 0.00 38.49 1.78
4695 6019 7.512130 TGGAAGAAGCATCTGAACACATATAT 58.488 34.615 0.00 0.00 35.59 0.86
4696 6020 6.888105 TGGAAGAAGCATCTGAACACATATA 58.112 36.000 0.00 0.00 35.59 0.86
4850 6175 7.039011 ACCACAAATAGTCAGACAGAACTATCA 60.039 37.037 2.66 0.00 0.00 2.15
4880 6205 9.832445 TGGAGATTCTACTTAACACCAATATTC 57.168 33.333 0.00 0.00 0.00 1.75
4882 6207 9.784531 CATGGAGATTCTACTTAACACCAATAT 57.215 33.333 0.00 0.00 0.00 1.28
4909 6234 5.482908 TCTCAGGAAAAGTTCTGCATACTC 58.517 41.667 2.46 0.00 0.00 2.59
4910 6235 5.489792 TCTCAGGAAAAGTTCTGCATACT 57.510 39.130 0.00 0.00 0.00 2.12
4911 6236 5.123027 CCTTCTCAGGAAAAGTTCTGCATAC 59.877 44.000 0.00 0.00 44.19 2.39
4912 6237 5.248640 CCTTCTCAGGAAAAGTTCTGCATA 58.751 41.667 0.00 0.00 44.19 3.14
4913 6238 4.077822 CCTTCTCAGGAAAAGTTCTGCAT 58.922 43.478 0.00 0.00 44.19 3.96
4914 6239 3.480470 CCTTCTCAGGAAAAGTTCTGCA 58.520 45.455 0.00 0.00 44.19 4.41
4915 6240 2.816672 CCCTTCTCAGGAAAAGTTCTGC 59.183 50.000 0.00 0.00 44.19 4.26
4916 6241 4.092116 ACCCTTCTCAGGAAAAGTTCTG 57.908 45.455 0.00 0.00 44.19 3.02
4917 6242 4.797912 AACCCTTCTCAGGAAAAGTTCT 57.202 40.909 0.00 0.00 44.19 3.01
4918 6243 5.451937 CCAAAACCCTTCTCAGGAAAAGTTC 60.452 44.000 0.00 0.00 44.19 3.01
4919 6244 4.405680 CCAAAACCCTTCTCAGGAAAAGTT 59.594 41.667 0.00 0.00 44.19 2.66
4920 6245 3.960755 CCAAAACCCTTCTCAGGAAAAGT 59.039 43.478 0.00 0.00 44.19 2.66
4921 6246 4.215109 TCCAAAACCCTTCTCAGGAAAAG 58.785 43.478 0.00 0.00 44.19 2.27
4922 6247 4.258457 TCCAAAACCCTTCTCAGGAAAA 57.742 40.909 0.00 0.00 44.19 2.29
4923 6248 3.963476 TCCAAAACCCTTCTCAGGAAA 57.037 42.857 0.00 0.00 44.19 3.13
4924 6249 4.034285 GATCCAAAACCCTTCTCAGGAA 57.966 45.455 0.00 0.00 44.19 3.36
4925 6250 3.721087 GATCCAAAACCCTTCTCAGGA 57.279 47.619 0.00 0.00 44.19 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.