Multiple sequence alignment - TraesCS3B01G185100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G185100 chr3B 100.000 3111 0 0 1 3111 201024928 201028038 0.000000e+00 5746
1 TraesCS3B01G185100 chr3B 96.429 84 3 0 540 623 201026383 201026466 4.180000e-29 139
2 TraesCS3B01G185100 chr3A 87.112 1707 110 40 482 2136 155824724 155826372 0.000000e+00 1832
3 TraesCS3B01G185100 chr3A 96.825 630 18 1 2484 3111 155827102 155827731 0.000000e+00 1051
4 TraesCS3B01G185100 chr3A 87.561 410 25 11 1 406 155824195 155824582 4.730000e-123 451
5 TraesCS3B01G185100 chr3D 90.751 1384 75 31 776 2137 137979350 137980702 0.000000e+00 1797
6 TraesCS3B01G185100 chr3D 96.818 440 11 2 2382 2820 137981044 137981481 0.000000e+00 732
7 TraesCS3B01G185100 chr3D 88.083 386 30 10 401 778 137977481 137977858 7.920000e-121 444
8 TraesCS3B01G185100 chr3D 97.959 196 4 0 2916 3111 137981682 137981877 1.070000e-89 340
9 TraesCS3B01G185100 chr3D 93.500 200 13 0 127 326 137889474 137889673 6.520000e-77 298
10 TraesCS3B01G185100 chr3D 90.265 113 8 3 539 651 137980030 137980139 8.990000e-31 145
11 TraesCS3B01G185100 chr3D 96.250 80 3 0 327 406 137977314 137977393 7.000000e-27 132
12 TraesCS3B01G185100 chr7A 95.556 90 4 0 539 628 561707754 561707843 8.990000e-31 145
13 TraesCS3B01G185100 chr1A 94.681 94 4 1 1444 1537 571561463 571561555 8.990000e-31 145
14 TraesCS3B01G185100 chr1A 91.837 98 7 1 1441 1538 571359284 571359380 5.410000e-28 135
15 TraesCS3B01G185100 chrUn 91.509 106 5 4 1456 1558 32916330 32916434 3.230000e-30 143
16 TraesCS3B01G185100 chr1D 92.929 99 6 1 1441 1539 475656792 475656889 3.230000e-30 143
17 TraesCS3B01G185100 chr1D 92.857 98 5 1 1441 1538 475701394 475701489 1.160000e-29 141
18 TraesCS3B01G185100 chr1D 94.505 91 4 1 1449 1539 475490185 475490096 4.180000e-29 139
19 TraesCS3B01G185100 chr1B 93.617 94 6 0 1446 1539 661576816 661576909 1.160000e-29 141
20 TraesCS3B01G185100 chr2D 90.476 105 7 3 524 626 76863402 76863299 5.410000e-28 135
21 TraesCS3B01G185100 chr7B 91.753 97 6 2 539 634 524519519 524519614 1.950000e-27 134
22 TraesCS3B01G185100 chr6A 90.909 99 6 2 539 637 507095820 507095915 2.520000e-26 130
23 TraesCS3B01G185100 chr7D 92.045 88 6 1 539 625 496106741 496106828 4.210000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G185100 chr3B 201024928 201028038 3110 False 2942.500000 5746 98.214500 1 3111 2 chr3B.!!$F1 3110
1 TraesCS3B01G185100 chr3A 155824195 155827731 3536 False 1111.333333 1832 90.499333 1 3111 3 chr3A.!!$F1 3110
2 TraesCS3B01G185100 chr3D 137977314 137981877 4563 False 598.333333 1797 93.354333 327 3111 6 chr3D.!!$F2 2784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
697 806 0.987715 CTCACGTTCAGACAGCGATG 59.012 55.0 0.0 0.0 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2561 4668 0.178891 TGGAAGAAGGCAGGAGGAGT 60.179 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.365514 TCAAGATAGTTGCACCCAAAGA 57.634 40.909 0.00 0.00 31.68 2.52
65 66 6.303839 AGATAGTTGCACCCAAAGACTAAAA 58.696 36.000 0.00 0.00 31.68 1.52
74 75 4.832823 ACCCAAAGACTAAAAACTCCCATG 59.167 41.667 0.00 0.00 0.00 3.66
101 102 4.763279 TCACACACTGAAATGAGCATGAAT 59.237 37.500 0.00 0.00 0.00 2.57
122 123 8.389779 TGAATTTGTTCTTCATGCTAAGTACA 57.610 30.769 0.00 3.44 35.69 2.90
123 124 8.845227 TGAATTTGTTCTTCATGCTAAGTACAA 58.155 29.630 12.42 12.42 41.83 2.41
124 125 9.118236 GAATTTGTTCTTCATGCTAAGTACAAC 57.882 33.333 14.76 5.19 42.64 3.32
125 126 7.561021 TTTGTTCTTCATGCTAAGTACAACA 57.439 32.000 14.76 7.10 42.64 3.33
126 127 6.785488 TGTTCTTCATGCTAAGTACAACAG 57.215 37.500 4.71 0.00 34.89 3.16
127 128 5.179368 TGTTCTTCATGCTAAGTACAACAGC 59.821 40.000 4.71 0.84 34.89 4.40
128 129 5.152623 TCTTCATGCTAAGTACAACAGCT 57.847 39.130 12.68 0.00 36.26 4.24
129 130 5.551233 TCTTCATGCTAAGTACAACAGCTT 58.449 37.500 12.68 5.73 36.26 3.74
130 131 5.997746 TCTTCATGCTAAGTACAACAGCTTT 59.002 36.000 12.68 1.23 36.26 3.51
141 142 8.743085 AAGTACAACAGCTTTATCATCATCAT 57.257 30.769 0.00 0.00 0.00 2.45
144 145 9.229784 GTACAACAGCTTTATCATCATCATTTG 57.770 33.333 0.00 0.00 0.00 2.32
179 180 4.881850 ACATTTGCAGTAACCATAGCCTAC 59.118 41.667 0.00 0.00 0.00 3.18
185 190 4.703093 GCAGTAACCATAGCCTACCAAAAA 59.297 41.667 0.00 0.00 0.00 1.94
221 226 4.652421 GGGATGGAGGTAGTACAACACATA 59.348 45.833 2.06 0.00 0.00 2.29
222 227 5.452917 GGGATGGAGGTAGTACAACACATAC 60.453 48.000 2.06 2.03 0.00 2.39
237 242 6.878389 ACAACACATACACACACATGATATCA 59.122 34.615 8.10 8.10 0.00 2.15
250 255 4.697514 CATGATATCATGTACGGGGGATC 58.302 47.826 29.90 0.00 46.40 3.36
254 259 1.874129 TCATGTACGGGGGATCACTT 58.126 50.000 0.00 0.00 0.00 3.16
260 265 3.449737 TGTACGGGGGATCACTTAAAGAG 59.550 47.826 0.00 0.00 0.00 2.85
266 271 3.198872 GGGATCACTTAAAGAGAAGGCG 58.801 50.000 0.00 0.00 0.00 5.52
274 279 5.352569 CACTTAAAGAGAAGGCGTCATCAAT 59.647 40.000 2.69 0.00 0.00 2.57
282 287 1.281867 AGGCGTCATCAATGGGAAGAA 59.718 47.619 0.00 0.00 0.00 2.52
283 288 2.092212 AGGCGTCATCAATGGGAAGAAT 60.092 45.455 0.00 0.00 0.00 2.40
310 315 2.058057 CGGCCAAAGGAAAACAATTCG 58.942 47.619 2.24 0.00 0.00 3.34
501 608 5.517054 GGTGCTGAAAAATCGAGTAGAGTAG 59.483 44.000 0.00 0.00 0.00 2.57
515 622 8.775527 TCGAGTAGAGTAGTGCAGATATAAAAG 58.224 37.037 0.00 0.00 0.00 2.27
537 644 7.730364 AAGTAATGTCAGGTTTGTAGAACAG 57.270 36.000 0.00 0.00 0.00 3.16
649 756 5.193663 TCGTTTGCATTCATTTTTCTCCA 57.806 34.783 0.00 0.00 0.00 3.86
654 761 5.725325 TGCATTCATTTTTCTCCACATGA 57.275 34.783 0.00 0.00 0.00 3.07
658 765 6.424509 GCATTCATTTTTCTCCACATGAACAA 59.575 34.615 0.00 0.00 38.22 2.83
673 780 7.080099 CACATGAACAATAACTTCCTTGACTG 58.920 38.462 0.00 0.00 0.00 3.51
674 781 6.207417 ACATGAACAATAACTTCCTTGACTGG 59.793 38.462 0.00 0.00 0.00 4.00
697 806 0.987715 CTCACGTTCAGACAGCGATG 59.012 55.000 0.00 0.00 0.00 3.84
702 811 1.576356 GTTCAGACAGCGATGATCCC 58.424 55.000 8.12 0.00 0.00 3.85
730 839 2.858787 AACCAGTCCCTTTTTCCCAA 57.141 45.000 0.00 0.00 0.00 4.12
748 857 3.057315 CCCAATCTGCGAAACAAATCTGT 60.057 43.478 0.00 0.00 37.39 3.41
749 858 4.155826 CCCAATCTGCGAAACAAATCTGTA 59.844 41.667 0.00 0.00 33.45 2.74
750 859 5.335583 CCCAATCTGCGAAACAAATCTGTAA 60.336 40.000 0.00 0.00 33.45 2.41
781 2383 5.665459 ACCGGTTCAGAGATGAGATAAAAG 58.335 41.667 0.00 0.00 0.00 2.27
782 2384 5.422331 ACCGGTTCAGAGATGAGATAAAAGA 59.578 40.000 0.00 0.00 0.00 2.52
784 2386 6.478344 CCGGTTCAGAGATGAGATAAAAGAAG 59.522 42.308 0.00 0.00 0.00 2.85
786 2388 6.820656 GGTTCAGAGATGAGATAAAAGAAGCA 59.179 38.462 0.00 0.00 32.90 3.91
959 2595 2.820037 GGGAAAGGAAGCGAGGCG 60.820 66.667 0.00 0.00 0.00 5.52
1023 2659 4.486503 GCCTCCCTCTGGCTGCTG 62.487 72.222 0.00 0.00 46.38 4.41
1024 2660 4.486503 CCTCCCTCTGGCTGCTGC 62.487 72.222 7.10 7.10 38.76 5.25
1025 2661 3.714001 CTCCCTCTGGCTGCTGCA 61.714 66.667 17.89 0.88 41.91 4.41
1026 2662 3.683966 CTCCCTCTGGCTGCTGCAG 62.684 68.421 24.80 24.80 41.91 4.41
1044 2680 0.261696 AGCTCCCTTCTCCTCCTCTC 59.738 60.000 0.00 0.00 0.00 3.20
1051 2687 0.115152 TTCTCCTCCTCTCCACAGCA 59.885 55.000 0.00 0.00 0.00 4.41
1052 2688 0.337773 TCTCCTCCTCTCCACAGCAT 59.662 55.000 0.00 0.00 0.00 3.79
1070 2706 1.064803 CATCGTCTTCCTCTCGACCAG 59.935 57.143 0.00 0.00 36.46 4.00
1073 2715 1.076727 TCTTCCTCTCGACCAGCCA 59.923 57.895 0.00 0.00 0.00 4.75
1076 2718 1.536073 TTCCTCTCGACCAGCCACTG 61.536 60.000 0.00 0.00 0.00 3.66
1088 2730 2.040278 CCACTGCCCCTCTCCTCT 59.960 66.667 0.00 0.00 0.00 3.69
1092 2734 0.912006 ACTGCCCCTCTCCTCTTTCC 60.912 60.000 0.00 0.00 0.00 3.13
1167 2809 0.547075 ATCTTGCCTGCAGCTCATCT 59.453 50.000 8.66 0.00 44.23 2.90
1250 2892 4.680537 AGAGGCGACGTCCCCAGT 62.681 66.667 20.95 4.86 0.00 4.00
1320 2962 3.627952 TACGGGCGGCTGTTCCAA 61.628 61.111 29.69 8.03 34.01 3.53
1384 3026 6.758886 ACTGTCGGAAAGATAGATGACAATTC 59.241 38.462 1.27 0.00 40.09 2.17
1387 3029 7.921214 TGTCGGAAAGATAGATGACAATTCTAC 59.079 37.037 0.00 0.00 33.79 2.59
1392 3042 8.885494 AAAGATAGATGACAATTCTACTGAGC 57.115 34.615 0.00 0.00 0.00 4.26
1416 3067 3.985279 TGTCACTATGTAAGCGTGAACAC 59.015 43.478 0.00 0.00 39.16 3.32
1426 3077 7.112528 TGTAAGCGTGAACACTATGTTTAAG 57.887 36.000 3.51 0.00 41.28 1.85
1428 3079 6.613755 AAGCGTGAACACTATGTTTAAGTT 57.386 33.333 3.51 0.00 41.28 2.66
1429 3080 5.985781 AGCGTGAACACTATGTTTAAGTTG 58.014 37.500 3.51 0.00 41.28 3.16
1430 3081 5.756347 AGCGTGAACACTATGTTTAAGTTGA 59.244 36.000 3.51 0.00 41.28 3.18
1454 3105 2.592796 TGTTCAACATCGCATCAACG 57.407 45.000 0.00 0.00 0.00 4.10
1601 3252 0.394192 TTGACTGAGACCACAGCCTG 59.606 55.000 0.00 0.00 41.06 4.85
1609 3260 1.102978 GACCACAGCCTGTTGTTGTT 58.897 50.000 2.79 0.00 28.23 2.83
1628 3279 8.850454 TGTTGTTAACTTCTGCTAAAATGAAC 57.150 30.769 7.22 0.00 0.00 3.18
1641 3292 4.505313 AAAATGAACCTTTCGAGCTTCC 57.495 40.909 0.00 0.00 0.00 3.46
1642 3293 3.425162 AATGAACCTTTCGAGCTTCCT 57.575 42.857 0.00 0.00 0.00 3.36
1644 3295 4.553330 ATGAACCTTTCGAGCTTCCTAA 57.447 40.909 0.00 0.00 0.00 2.69
1645 3296 4.345859 TGAACCTTTCGAGCTTCCTAAA 57.654 40.909 0.00 0.00 0.00 1.85
1646 3297 4.062991 TGAACCTTTCGAGCTTCCTAAAC 58.937 43.478 0.00 0.00 0.00 2.01
1647 3298 3.055209 ACCTTTCGAGCTTCCTAAACC 57.945 47.619 0.00 0.00 0.00 3.27
1648 3299 2.638363 ACCTTTCGAGCTTCCTAAACCT 59.362 45.455 0.00 0.00 0.00 3.50
1667 3318 3.961408 ACCTCTCTATAACAATCTGCCGT 59.039 43.478 0.00 0.00 0.00 5.68
1684 3335 5.041951 TGCCGTTGCAAAATTAGACTAAG 57.958 39.130 0.00 0.00 46.66 2.18
1685 3336 4.757657 TGCCGTTGCAAAATTAGACTAAGA 59.242 37.500 0.00 0.00 46.66 2.10
1686 3337 5.414454 TGCCGTTGCAAAATTAGACTAAGAT 59.586 36.000 0.00 0.00 46.66 2.40
1687 3338 5.739161 GCCGTTGCAAAATTAGACTAAGATG 59.261 40.000 0.00 1.52 37.47 2.90
1688 3339 6.403200 GCCGTTGCAAAATTAGACTAAGATGA 60.403 38.462 0.00 0.00 37.47 2.92
1689 3340 7.182761 CCGTTGCAAAATTAGACTAAGATGAG 58.817 38.462 0.00 0.00 0.00 2.90
1690 3341 7.064609 CCGTTGCAAAATTAGACTAAGATGAGA 59.935 37.037 0.00 0.00 0.00 3.27
1691 3342 8.443160 CGTTGCAAAATTAGACTAAGATGAGAA 58.557 33.333 0.00 0.00 0.00 2.87
1692 3343 9.766277 GTTGCAAAATTAGACTAAGATGAGAAG 57.234 33.333 0.00 0.00 0.00 2.85
1693 3344 9.725019 TTGCAAAATTAGACTAAGATGAGAAGA 57.275 29.630 0.00 0.00 0.00 2.87
1694 3345 9.896645 TGCAAAATTAGACTAAGATGAGAAGAT 57.103 29.630 0.73 0.00 0.00 2.40
1700 3351 8.988546 TTAGACTAAGATGAGAAGATACTGCT 57.011 34.615 0.00 0.00 0.00 4.24
1701 3352 7.896383 AGACTAAGATGAGAAGATACTGCTT 57.104 36.000 0.00 0.00 0.00 3.91
1743 3414 1.082104 GCGTGCTTCCGGTTTCAAG 60.082 57.895 0.00 0.00 0.00 3.02
1757 3428 3.226347 GTTTCAAGCAGACATAACGTGC 58.774 45.455 0.00 0.00 37.48 5.34
1976 3647 2.203209 GTCATAGCCGGCAAGGGG 60.203 66.667 31.54 13.22 41.48 4.79
2008 3679 2.808543 CCTCCGACAAGAAGAAAAGGTG 59.191 50.000 0.00 0.00 0.00 4.00
2009 3680 3.467803 CTCCGACAAGAAGAAAAGGTGT 58.532 45.455 0.00 0.00 0.00 4.16
2013 3684 3.871594 CGACAAGAAGAAAAGGTGTGTCT 59.128 43.478 0.00 0.00 33.41 3.41
2026 3697 3.006967 AGGTGTGTCTGATAACCTGTCAC 59.993 47.826 7.76 0.00 41.52 3.67
2045 3716 0.178992 CCAAAGTTCTCACCTGGCCA 60.179 55.000 4.71 4.71 0.00 5.36
2055 3726 1.411246 TCACCTGGCCATCGTATGTAC 59.589 52.381 5.51 0.00 0.00 2.90
2092 3763 1.129998 CTCATCTCACTTGGCTTTGCG 59.870 52.381 0.00 0.00 0.00 4.85
2128 3799 1.630369 TGATCCACCTCAAGGAACTGG 59.370 52.381 2.30 0.35 40.86 4.00
2137 3808 1.071471 AAGGAACTGGAGTGCACCG 59.929 57.895 14.63 2.20 40.86 4.94
2161 3920 1.211457 GTGCTGGAGAAGGATGTCCAT 59.789 52.381 1.30 0.00 46.96 3.41
2162 3921 1.918262 TGCTGGAGAAGGATGTCCATT 59.082 47.619 1.30 0.00 46.96 3.16
2163 3922 2.295885 GCTGGAGAAGGATGTCCATTG 58.704 52.381 1.30 0.00 46.96 2.82
2164 3923 2.356535 GCTGGAGAAGGATGTCCATTGT 60.357 50.000 1.30 0.00 46.96 2.71
2165 3924 3.875369 GCTGGAGAAGGATGTCCATTGTT 60.875 47.826 1.30 0.00 46.96 2.83
2166 3925 3.944015 CTGGAGAAGGATGTCCATTGTTC 59.056 47.826 1.30 0.00 46.96 3.18
2167 3926 3.330405 TGGAGAAGGATGTCCATTGTTCA 59.670 43.478 1.30 0.00 43.65 3.18
2168 3927 4.202556 TGGAGAAGGATGTCCATTGTTCAA 60.203 41.667 1.30 0.00 43.65 2.69
2169 3928 4.156739 GGAGAAGGATGTCCATTGTTCAAC 59.843 45.833 1.30 0.00 38.85 3.18
2170 3929 4.082125 AGAAGGATGTCCATTGTTCAACC 58.918 43.478 1.30 0.00 38.89 3.77
2171 3930 3.814504 AGGATGTCCATTGTTCAACCT 57.185 42.857 1.30 0.00 38.89 3.50
2190 3949 6.490040 TCAACCTTCCTAGATTTTGTTTCAGG 59.510 38.462 0.00 0.00 0.00 3.86
2193 3952 5.124617 CCTTCCTAGATTTTGTTTCAGGCTC 59.875 44.000 0.00 0.00 0.00 4.70
2218 3977 4.142359 ACGTTGTCTAGCTAGGTCAGATTG 60.142 45.833 20.58 12.06 0.00 2.67
2230 3989 1.059994 CAGATTGTTCGAGCAGCGC 59.940 57.895 0.00 0.00 40.61 5.92
2232 3991 1.059994 GATTGTTCGAGCAGCGCTG 59.940 57.895 32.83 32.83 39.88 5.18
2233 3992 1.630244 GATTGTTCGAGCAGCGCTGT 61.630 55.000 35.80 23.48 39.88 4.40
2234 3993 0.389817 ATTGTTCGAGCAGCGCTGTA 60.390 50.000 35.80 17.95 39.88 2.74
2235 3994 0.598942 TTGTTCGAGCAGCGCTGTAA 60.599 50.000 35.80 22.21 39.88 2.41
2236 3995 0.389817 TGTTCGAGCAGCGCTGTAAT 60.390 50.000 35.80 23.20 39.88 1.89
2237 3996 0.721718 GTTCGAGCAGCGCTGTAATT 59.278 50.000 35.80 20.28 39.88 1.40
2238 3997 0.999406 TTCGAGCAGCGCTGTAATTC 59.001 50.000 35.80 25.21 39.88 2.17
2239 3998 0.108851 TCGAGCAGCGCTGTAATTCA 60.109 50.000 35.80 14.54 39.88 2.57
2240 3999 0.933097 CGAGCAGCGCTGTAATTCAT 59.067 50.000 35.80 14.88 39.88 2.57
2241 4000 1.070975 CGAGCAGCGCTGTAATTCATC 60.071 52.381 35.80 18.10 39.88 2.92
2242 4001 1.262683 GAGCAGCGCTGTAATTCATCC 59.737 52.381 35.80 17.39 39.88 3.51
2243 4002 1.016627 GCAGCGCTGTAATTCATCCA 58.983 50.000 35.80 0.00 0.00 3.41
2250 4009 2.646930 CTGTAATTCATCCAGCCTGCA 58.353 47.619 0.00 0.00 0.00 4.41
2262 4021 1.407979 CAGCCTGCAGAATCAATTCCC 59.592 52.381 17.39 0.00 37.51 3.97
2267 4026 4.082354 GCCTGCAGAATCAATTCCCATATC 60.082 45.833 17.39 0.00 37.51 1.63
2289 4048 3.568538 GAAGTTTTGTACGTAGCTCCGA 58.431 45.455 5.42 0.00 0.00 4.55
2292 4051 3.924686 AGTTTTGTACGTAGCTCCGAATG 59.075 43.478 5.42 0.00 0.00 2.67
2330 4100 7.777095 ACTCCACTCTTCTATGTTTACATCTC 58.223 38.462 0.00 0.00 37.76 2.75
2350 4120 3.540617 TCGCTTGCCAAATCTAATAGCA 58.459 40.909 0.00 0.00 0.00 3.49
2358 4128 4.500477 GCCAAATCTAATAGCAGCAAAACG 59.500 41.667 0.00 0.00 0.00 3.60
2362 4132 5.897377 ATCTAATAGCAGCAAAACGGTTT 57.103 34.783 0.00 0.00 0.00 3.27
2369 4139 2.731217 CAGCAAAACGGTTTCAGGAAG 58.269 47.619 6.57 0.00 0.00 3.46
2373 4143 3.181490 GCAAAACGGTTTCAGGAAGTTCT 60.181 43.478 6.57 0.00 0.00 3.01
2374 4144 4.035909 GCAAAACGGTTTCAGGAAGTTCTA 59.964 41.667 6.57 0.00 0.00 2.10
2375 4145 5.748592 CAAAACGGTTTCAGGAAGTTCTAG 58.251 41.667 6.57 0.00 0.00 2.43
2377 4147 2.970640 ACGGTTTCAGGAAGTTCTAGGT 59.029 45.455 2.25 0.00 0.00 3.08
2378 4148 3.006644 ACGGTTTCAGGAAGTTCTAGGTC 59.993 47.826 2.25 0.00 0.00 3.85
2379 4149 3.006537 CGGTTTCAGGAAGTTCTAGGTCA 59.993 47.826 2.25 0.00 0.00 4.02
2380 4150 4.570930 GGTTTCAGGAAGTTCTAGGTCAG 58.429 47.826 2.25 0.00 0.00 3.51
2391 4210 6.882768 AGTTCTAGGTCAGGAGATTCATTT 57.117 37.500 0.00 0.00 0.00 2.32
2392 4211 7.264294 AGTTCTAGGTCAGGAGATTCATTTT 57.736 36.000 0.00 0.00 0.00 1.82
2393 4212 7.334858 AGTTCTAGGTCAGGAGATTCATTTTC 58.665 38.462 0.00 0.00 0.00 2.29
2394 4213 6.874278 TCTAGGTCAGGAGATTCATTTTCA 57.126 37.500 0.00 0.00 0.00 2.69
2399 4220 5.335191 GGTCAGGAGATTCATTTTCACACAC 60.335 44.000 0.00 0.00 0.00 3.82
2602 4709 2.810852 GCAGGAAGGTTCAGAAGTGAAG 59.189 50.000 0.00 0.00 43.55 3.02
2694 4801 2.627217 GGTGGGGACTCTTCTATCACCT 60.627 54.545 0.00 0.00 39.36 4.00
2708 4815 7.623677 TCTTCTATCACCTTATCTTCCCTTTCA 59.376 37.037 0.00 0.00 0.00 2.69
2861 5127 2.058057 GCAAAATGCAGTTGGTTACGG 58.942 47.619 0.00 0.00 44.26 4.02
2869 5135 3.055021 TGCAGTTGGTTACGGATGGATAA 60.055 43.478 0.00 0.00 0.00 1.75
3030 5298 2.203806 GGTGACCTCCAGGAGTAGC 58.796 63.158 15.86 7.30 38.94 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.685116 GCAACTATCTTGAAGATGGTAGCTCT 60.685 42.308 21.90 5.91 44.23 4.09
28 29 5.007136 GTGCAACTATCTTGAAGATGGTAGC 59.993 44.000 21.90 17.25 44.23 3.58
59 60 3.826729 GTGAAGCCATGGGAGTTTTTAGT 59.173 43.478 15.13 0.00 0.00 2.24
65 66 0.478072 TGTGTGAAGCCATGGGAGTT 59.522 50.000 15.13 0.00 0.00 3.01
74 75 2.351157 GCTCATTTCAGTGTGTGAAGCC 60.351 50.000 0.00 0.00 46.09 4.35
101 102 7.561021 TGTTGTACTTAGCATGAAGAACAAA 57.439 32.000 0.00 0.00 0.00 2.83
113 114 7.539712 TGATGATAAAGCTGTTGTACTTAGC 57.460 36.000 8.04 8.04 37.71 3.09
114 115 9.317936 TGATGATGATAAAGCTGTTGTACTTAG 57.682 33.333 0.00 0.00 0.00 2.18
115 116 9.836864 ATGATGATGATAAAGCTGTTGTACTTA 57.163 29.630 0.00 0.00 0.00 2.24
116 117 8.743085 ATGATGATGATAAAGCTGTTGTACTT 57.257 30.769 0.00 0.00 0.00 2.24
117 118 8.743085 AATGATGATGATAAAGCTGTTGTACT 57.257 30.769 0.00 0.00 0.00 2.73
118 119 9.229784 CAAATGATGATGATAAAGCTGTTGTAC 57.770 33.333 0.00 0.00 0.00 2.90
119 120 8.959548 ACAAATGATGATGATAAAGCTGTTGTA 58.040 29.630 0.00 0.00 0.00 2.41
120 121 7.833786 ACAAATGATGATGATAAAGCTGTTGT 58.166 30.769 0.00 0.00 0.00 3.32
121 122 8.697846 AACAAATGATGATGATAAAGCTGTTG 57.302 30.769 0.00 0.00 0.00 3.33
122 123 9.146984 CAAACAAATGATGATGATAAAGCTGTT 57.853 29.630 0.00 0.00 0.00 3.16
123 124 7.762615 CCAAACAAATGATGATGATAAAGCTGT 59.237 33.333 0.00 0.00 0.00 4.40
124 125 7.254319 GCCAAACAAATGATGATGATAAAGCTG 60.254 37.037 0.00 0.00 0.00 4.24
125 126 6.759827 GCCAAACAAATGATGATGATAAAGCT 59.240 34.615 0.00 0.00 0.00 3.74
126 127 6.018507 GGCCAAACAAATGATGATGATAAAGC 60.019 38.462 0.00 0.00 0.00 3.51
127 128 6.480981 GGGCCAAACAAATGATGATGATAAAG 59.519 38.462 4.39 0.00 0.00 1.85
128 129 6.156602 AGGGCCAAACAAATGATGATGATAAA 59.843 34.615 6.18 0.00 0.00 1.40
129 130 5.662208 AGGGCCAAACAAATGATGATGATAA 59.338 36.000 6.18 0.00 0.00 1.75
130 131 5.210430 AGGGCCAAACAAATGATGATGATA 58.790 37.500 6.18 0.00 0.00 2.15
141 142 3.244044 GCAAATGTAGAGGGCCAAACAAA 60.244 43.478 6.18 0.00 0.00 2.83
144 145 1.892474 TGCAAATGTAGAGGGCCAAAC 59.108 47.619 6.18 0.47 0.00 2.93
192 197 5.789574 TGTACTACCTCCATCCCAATTTT 57.210 39.130 0.00 0.00 0.00 1.82
195 200 4.080526 GTGTTGTACTACCTCCATCCCAAT 60.081 45.833 4.98 0.00 0.00 3.16
202 207 4.833938 TGTGTATGTGTTGTACTACCTCCA 59.166 41.667 4.98 0.34 0.00 3.86
237 242 4.035112 TCTTTAAGTGATCCCCCGTACAT 58.965 43.478 0.00 0.00 0.00 2.29
250 255 4.245660 TGATGACGCCTTCTCTTTAAGTG 58.754 43.478 0.00 0.00 0.00 3.16
254 259 4.191544 CCATTGATGACGCCTTCTCTTTA 58.808 43.478 0.00 0.00 0.00 1.85
260 265 1.672881 CTTCCCATTGATGACGCCTTC 59.327 52.381 0.00 0.00 0.00 3.46
266 271 6.202954 CGGTTACTATTCTTCCCATTGATGAC 59.797 42.308 0.00 0.00 0.00 3.06
274 279 1.487558 GGCCGGTTACTATTCTTCCCA 59.512 52.381 1.90 0.00 0.00 4.37
282 287 3.724732 TTTCCTTTGGCCGGTTACTAT 57.275 42.857 1.90 0.00 0.00 2.12
283 288 3.148412 GTTTTCCTTTGGCCGGTTACTA 58.852 45.455 1.90 0.00 0.00 1.82
310 315 1.450134 TGTGATGCGGGTCATGCTC 60.450 57.895 0.00 0.00 35.05 4.26
354 359 4.336713 GCTTAGCTCAAATGGTAGGAAAGG 59.663 45.833 0.00 0.00 0.00 3.11
406 411 9.749490 TTAATTTACGAAGTTTTGCGATTAGAG 57.251 29.630 0.00 0.00 37.78 2.43
465 572 0.878523 TCAGCACCGAACGAAACTGG 60.879 55.000 0.00 0.00 0.00 4.00
501 608 8.438676 ACCTGACATTACTTTTATATCTGCAC 57.561 34.615 0.00 0.00 0.00 4.57
515 622 7.724305 TTCTGTTCTACAAACCTGACATTAC 57.276 36.000 0.00 0.00 0.00 1.89
537 644 4.058817 CCGCTAGACCATAGAACCATTTC 58.941 47.826 0.00 0.00 0.00 2.17
624 731 6.019156 TGGAGAAAAATGAATGCAAACGAAAC 60.019 34.615 0.00 0.00 0.00 2.78
633 740 5.927689 TGTTCATGTGGAGAAAAATGAATGC 59.072 36.000 0.00 0.00 40.20 3.56
649 756 6.207417 CCAGTCAAGGAAGTTATTGTTCATGT 59.793 38.462 0.00 0.00 0.00 3.21
654 761 4.729868 AGCCAGTCAAGGAAGTTATTGTT 58.270 39.130 0.00 0.00 0.00 2.83
658 765 4.287067 TGAGAAGCCAGTCAAGGAAGTTAT 59.713 41.667 0.00 0.00 0.00 1.89
673 780 1.423395 CTGTCTGAACGTGAGAAGCC 58.577 55.000 0.00 0.00 0.00 4.35
674 781 0.787183 GCTGTCTGAACGTGAGAAGC 59.213 55.000 0.00 2.95 0.00 3.86
697 806 4.445019 GGGACTGGTTATCTGAAAGGGATC 60.445 50.000 0.00 0.00 0.00 3.36
702 811 6.071896 GGAAAAAGGGACTGGTTATCTGAAAG 60.072 42.308 0.00 0.00 40.86 2.62
730 839 7.692291 CGTTTATTACAGATTTGTTTCGCAGAT 59.308 33.333 0.00 0.00 38.76 2.90
748 857 5.389859 TCTCTGAACCGGTTCGTTTATTA 57.610 39.130 35.42 19.36 42.28 0.98
749 858 4.261578 TCTCTGAACCGGTTCGTTTATT 57.738 40.909 35.42 6.87 42.28 1.40
750 859 3.947910 TCTCTGAACCGGTTCGTTTAT 57.052 42.857 35.42 7.69 42.28 1.40
781 2383 5.734855 TGCTCCTACGATTTTATTGCTTC 57.265 39.130 0.00 0.00 0.00 3.86
782 2384 4.035675 GCTGCTCCTACGATTTTATTGCTT 59.964 41.667 0.00 0.00 0.00 3.91
784 2386 3.312421 TGCTGCTCCTACGATTTTATTGC 59.688 43.478 0.00 0.00 0.00 3.56
786 2388 3.877508 GGTGCTGCTCCTACGATTTTATT 59.122 43.478 13.24 0.00 0.00 1.40
865 2496 2.747989 GGAAAAGATTGGAGGACGAACC 59.252 50.000 0.00 0.00 39.35 3.62
870 2501 2.084546 CGTGGGAAAAGATTGGAGGAC 58.915 52.381 0.00 0.00 0.00 3.85
959 2595 4.416738 GCCACACTCCCTCCCTGC 62.417 72.222 0.00 0.00 0.00 4.85
989 2625 2.578664 CCGCCATTTTTCAGGGGC 59.421 61.111 0.00 0.00 42.98 5.80
1020 2656 2.124778 GGAGAAGGGAGCTGCAGC 60.125 66.667 31.53 31.53 42.49 5.25
1021 2657 1.521616 GAGGAGAAGGGAGCTGCAG 59.478 63.158 10.11 10.11 0.00 4.41
1022 2658 1.992277 GGAGGAGAAGGGAGCTGCA 60.992 63.158 7.79 0.00 0.00 4.41
1023 2659 1.685355 GAGGAGGAGAAGGGAGCTGC 61.685 65.000 0.00 0.00 0.00 5.25
1024 2660 0.032217 AGAGGAGGAGAAGGGAGCTG 60.032 60.000 0.00 0.00 0.00 4.24
1025 2661 0.261696 GAGAGGAGGAGAAGGGAGCT 59.738 60.000 0.00 0.00 0.00 4.09
1026 2662 0.759060 GGAGAGGAGGAGAAGGGAGC 60.759 65.000 0.00 0.00 0.00 4.70
1027 2663 0.633921 TGGAGAGGAGGAGAAGGGAG 59.366 60.000 0.00 0.00 0.00 4.30
1028 2664 0.336737 GTGGAGAGGAGGAGAAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
1044 2680 0.534412 AGAGGAAGACGATGCTGTGG 59.466 55.000 0.00 0.00 0.00 4.17
1051 2687 1.384525 CTGGTCGAGAGGAAGACGAT 58.615 55.000 0.00 0.00 38.20 3.73
1052 2688 1.306642 GCTGGTCGAGAGGAAGACGA 61.307 60.000 0.00 0.00 38.20 4.20
1070 2706 3.791586 GAGGAGAGGGGCAGTGGC 61.792 72.222 8.47 8.47 40.13 5.01
1073 2715 0.912006 GGAAAGAGGAGAGGGGCAGT 60.912 60.000 0.00 0.00 0.00 4.40
1076 2718 2.904131 CGGAAAGAGGAGAGGGGC 59.096 66.667 0.00 0.00 0.00 5.80
1167 2809 0.394488 CAGAGGACGAGGAGCTACCA 60.394 60.000 0.00 0.00 42.04 3.25
1384 3026 5.689514 GCTTACATAGTGACATGCTCAGTAG 59.310 44.000 14.20 10.47 38.07 2.57
1387 3029 3.488678 CGCTTACATAGTGACATGCTCAG 59.511 47.826 0.00 0.00 36.43 3.35
1392 3042 4.625311 TGTTCACGCTTACATAGTGACATG 59.375 41.667 0.00 0.00 43.54 3.21
1428 3079 6.434018 TGATGCGATGTTGAACATAATTCA 57.566 33.333 11.28 9.21 39.27 2.57
1429 3080 6.075936 CGTTGATGCGATGTTGAACATAATTC 60.076 38.462 11.28 6.88 39.27 2.17
1430 3081 5.738693 CGTTGATGCGATGTTGAACATAATT 59.261 36.000 11.28 0.00 39.27 1.40
1454 3105 3.054361 ACCACTAGACCATGGAACCATTC 60.054 47.826 21.47 3.91 39.46 2.67
1545 3196 9.644993 GTCACAGTGGCAAAAATAAATAAAAAC 57.355 29.630 0.00 0.00 0.00 2.43
1550 3201 7.283625 ACTGTCACAGTGGCAAAAATAAATA 57.716 32.000 10.48 0.00 43.63 1.40
1601 3252 8.850454 TCATTTTAGCAGAAGTTAACAACAAC 57.150 30.769 8.61 0.00 0.00 3.32
1609 3260 7.442969 TCGAAAGGTTCATTTTAGCAGAAGTTA 59.557 33.333 0.00 0.00 0.00 2.24
1628 3279 3.263261 GAGGTTTAGGAAGCTCGAAAGG 58.737 50.000 3.03 0.00 46.66 3.11
1641 3292 6.642950 CGGCAGATTGTTATAGAGAGGTTTAG 59.357 42.308 0.00 0.00 0.00 1.85
1642 3293 6.097839 ACGGCAGATTGTTATAGAGAGGTTTA 59.902 38.462 0.00 0.00 0.00 2.01
1644 3295 4.406003 ACGGCAGATTGTTATAGAGAGGTT 59.594 41.667 0.00 0.00 0.00 3.50
1645 3296 3.961408 ACGGCAGATTGTTATAGAGAGGT 59.039 43.478 0.00 0.00 0.00 3.85
1646 3297 4.592485 ACGGCAGATTGTTATAGAGAGG 57.408 45.455 0.00 0.00 0.00 3.69
1647 3298 4.210120 GCAACGGCAGATTGTTATAGAGAG 59.790 45.833 0.00 0.00 40.72 3.20
1648 3299 4.119862 GCAACGGCAGATTGTTATAGAGA 58.880 43.478 0.00 0.00 40.72 3.10
1667 3318 9.725019 TCTTCTCATCTTAGTCTAATTTTGCAA 57.275 29.630 0.00 0.00 0.00 4.08
1674 3325 9.586732 AGCAGTATCTTCTCATCTTAGTCTAAT 57.413 33.333 0.00 0.00 0.00 1.73
1682 3333 8.072321 TCAAGTAAGCAGTATCTTCTCATCTT 57.928 34.615 0.00 0.00 0.00 2.40
1683 3334 7.652524 TCAAGTAAGCAGTATCTTCTCATCT 57.347 36.000 0.00 0.00 0.00 2.90
1684 3335 8.709386 TTTCAAGTAAGCAGTATCTTCTCATC 57.291 34.615 0.00 0.00 0.00 2.92
1685 3336 9.507329 TTTTTCAAGTAAGCAGTATCTTCTCAT 57.493 29.630 0.00 0.00 0.00 2.90
1686 3337 8.902540 TTTTTCAAGTAAGCAGTATCTTCTCA 57.097 30.769 0.00 0.00 0.00 3.27
1716 3380 2.417586 ACCGGAAGCACGCTTATTTAAC 59.582 45.455 9.46 0.00 36.26 2.01
1717 3381 2.702261 ACCGGAAGCACGCTTATTTAA 58.298 42.857 9.46 0.00 36.26 1.52
1718 3382 2.389962 ACCGGAAGCACGCTTATTTA 57.610 45.000 9.46 0.00 36.26 1.40
1719 3383 1.530323 AACCGGAAGCACGCTTATTT 58.470 45.000 9.46 0.00 36.26 1.40
1720 3384 1.467342 GAAACCGGAAGCACGCTTATT 59.533 47.619 9.46 0.00 36.26 1.40
1721 3385 1.084289 GAAACCGGAAGCACGCTTAT 58.916 50.000 9.46 0.00 36.26 1.73
1722 3386 0.249953 TGAAACCGGAAGCACGCTTA 60.250 50.000 9.46 0.00 36.26 3.09
1724 3388 1.507141 CTTGAAACCGGAAGCACGCT 61.507 55.000 9.46 0.00 0.00 5.07
1725 3389 1.082104 CTTGAAACCGGAAGCACGC 60.082 57.895 9.46 0.00 0.00 5.34
1726 3390 1.082104 GCTTGAAACCGGAAGCACG 60.082 57.895 18.05 7.35 43.44 5.34
1743 3414 2.996621 AGAAAGAGCACGTTATGTCTGC 59.003 45.455 0.00 0.00 0.00 4.26
1757 3428 6.212993 ACCCCCTAAAGTACAGTTAGAAAGAG 59.787 42.308 14.69 2.15 31.37 2.85
1808 3479 4.785453 CCGTTGCAGCCCCTCTCC 62.785 72.222 0.00 0.00 0.00 3.71
2008 3679 3.678056 TGGTGACAGGTTATCAGACAC 57.322 47.619 0.00 0.00 35.01 3.67
2009 3680 4.102524 ACTTTGGTGACAGGTTATCAGACA 59.897 41.667 0.00 0.00 44.54 3.41
2013 3684 5.163248 TGAGAACTTTGGTGACAGGTTATCA 60.163 40.000 0.00 0.00 44.99 2.15
2026 3697 0.178992 TGGCCAGGTGAGAACTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
2045 3716 5.049060 CAGCTCTTGAGCTAGTACATACGAT 60.049 44.000 22.62 0.00 44.30 3.73
2137 3808 1.022735 CATCCTTCTCCAGCACATGC 58.977 55.000 0.00 0.00 42.49 4.06
2161 3920 7.654022 AACAAAATCTAGGAAGGTTGAACAA 57.346 32.000 0.00 0.00 0.00 2.83
2162 3921 7.340743 TGAAACAAAATCTAGGAAGGTTGAACA 59.659 33.333 0.00 0.00 0.00 3.18
2163 3922 7.712797 TGAAACAAAATCTAGGAAGGTTGAAC 58.287 34.615 0.00 0.00 0.00 3.18
2164 3923 7.014230 CCTGAAACAAAATCTAGGAAGGTTGAA 59.986 37.037 0.00 0.00 0.00 2.69
2165 3924 6.490040 CCTGAAACAAAATCTAGGAAGGTTGA 59.510 38.462 0.00 0.00 0.00 3.18
2166 3925 6.681777 CCTGAAACAAAATCTAGGAAGGTTG 58.318 40.000 0.00 0.00 0.00 3.77
2167 3926 5.243954 GCCTGAAACAAAATCTAGGAAGGTT 59.756 40.000 0.00 0.00 0.00 3.50
2168 3927 4.767409 GCCTGAAACAAAATCTAGGAAGGT 59.233 41.667 0.00 0.00 0.00 3.50
2169 3928 5.012893 AGCCTGAAACAAAATCTAGGAAGG 58.987 41.667 0.00 0.00 0.00 3.46
2170 3929 5.163814 CGAGCCTGAAACAAAATCTAGGAAG 60.164 44.000 0.00 0.00 0.00 3.46
2171 3930 4.695455 CGAGCCTGAAACAAAATCTAGGAA 59.305 41.667 0.00 0.00 0.00 3.36
2193 3952 1.736126 TGACCTAGCTAGACAACGTCG 59.264 52.381 22.70 5.13 37.67 5.12
2218 3977 0.721718 AATTACAGCGCTGCTCGAAC 59.278 50.000 36.28 0.00 41.67 3.95
2230 3989 2.617308 CTGCAGGCTGGATGAATTACAG 59.383 50.000 17.64 7.56 35.40 2.74
2232 3991 2.923121 TCTGCAGGCTGGATGAATTAC 58.077 47.619 17.64 0.00 0.00 1.89
2233 3992 3.650281 TTCTGCAGGCTGGATGAATTA 57.350 42.857 17.64 0.00 0.00 1.40
2234 3993 2.519771 TTCTGCAGGCTGGATGAATT 57.480 45.000 17.64 0.00 0.00 2.17
2235 3994 2.092049 TGATTCTGCAGGCTGGATGAAT 60.092 45.455 23.16 23.16 0.00 2.57
2236 3995 1.282738 TGATTCTGCAGGCTGGATGAA 59.717 47.619 17.64 17.77 0.00 2.57
2237 3996 0.913924 TGATTCTGCAGGCTGGATGA 59.086 50.000 17.64 10.10 0.00 2.92
2238 3997 1.758936 TTGATTCTGCAGGCTGGATG 58.241 50.000 17.64 7.82 0.00 3.51
2239 3998 2.750141 ATTGATTCTGCAGGCTGGAT 57.250 45.000 17.64 0.00 0.00 3.41
2240 3999 2.372264 GAATTGATTCTGCAGGCTGGA 58.628 47.619 17.64 13.38 34.05 3.86
2241 4000 1.407979 GGAATTGATTCTGCAGGCTGG 59.592 52.381 17.64 0.00 37.00 4.85
2242 4001 1.407979 GGGAATTGATTCTGCAGGCTG 59.592 52.381 15.13 10.94 37.00 4.85
2243 4002 1.006281 TGGGAATTGATTCTGCAGGCT 59.994 47.619 15.13 0.55 37.00 4.58
2250 4009 8.408601 CAAAACTTCGATATGGGAATTGATTCT 58.591 33.333 3.94 0.00 37.00 2.40
2262 4021 6.074994 GGAGCTACGTACAAAACTTCGATATG 60.075 42.308 0.00 0.00 0.00 1.78
2267 4026 2.340577 CGGAGCTACGTACAAAACTTCG 59.659 50.000 11.15 0.00 0.00 3.79
2289 4048 2.290641 TGGAGTACATTTGCCGTCCATT 60.291 45.455 0.00 0.00 0.00 3.16
2292 4051 1.084289 GTGGAGTACATTTGCCGTCC 58.916 55.000 0.00 0.00 0.00 4.79
2330 4100 3.851105 GCTGCTATTAGATTTGGCAAGCG 60.851 47.826 0.00 0.00 32.43 4.68
2350 4120 2.375146 ACTTCCTGAAACCGTTTTGCT 58.625 42.857 0.00 0.00 0.00 3.91
2358 4128 4.563786 CCTGACCTAGAACTTCCTGAAACC 60.564 50.000 0.00 0.00 0.00 3.27
2362 4132 3.333980 TCTCCTGACCTAGAACTTCCTGA 59.666 47.826 0.00 0.00 0.00 3.86
2369 4139 7.065204 GTGAAAATGAATCTCCTGACCTAGAAC 59.935 40.741 0.00 0.00 0.00 3.01
2373 4143 6.173339 GTGTGAAAATGAATCTCCTGACCTA 58.827 40.000 0.00 0.00 0.00 3.08
2374 4144 5.006386 GTGTGAAAATGAATCTCCTGACCT 58.994 41.667 0.00 0.00 0.00 3.85
2375 4145 4.761739 TGTGTGAAAATGAATCTCCTGACC 59.238 41.667 0.00 0.00 0.00 4.02
2377 4147 5.375773 TGTGTGTGAAAATGAATCTCCTGA 58.624 37.500 0.00 0.00 0.00 3.86
2378 4148 5.694231 TGTGTGTGAAAATGAATCTCCTG 57.306 39.130 0.00 0.00 0.00 3.86
2379 4149 5.593909 TGTTGTGTGTGAAAATGAATCTCCT 59.406 36.000 0.00 0.00 0.00 3.69
2380 4150 5.830912 TGTTGTGTGTGAAAATGAATCTCC 58.169 37.500 0.00 0.00 0.00 3.71
2391 4210 2.297315 TGTTTTGGCTGTTGTGTGTGAA 59.703 40.909 0.00 0.00 0.00 3.18
2392 4211 1.889170 TGTTTTGGCTGTTGTGTGTGA 59.111 42.857 0.00 0.00 0.00 3.58
2393 4212 2.360553 TGTTTTGGCTGTTGTGTGTG 57.639 45.000 0.00 0.00 0.00 3.82
2394 4213 3.260740 CATTGTTTTGGCTGTTGTGTGT 58.739 40.909 0.00 0.00 0.00 3.72
2561 4668 0.178891 TGGAAGAAGGCAGGAGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
2694 4801 7.039882 GTGTATCTCGTTGAAAGGGAAGATAA 58.960 38.462 0.00 0.00 0.00 1.75
2708 4815 6.342338 ACTAGTCCTTTTGTGTATCTCGTT 57.658 37.500 0.00 0.00 0.00 3.85
2861 5127 4.883585 TGTCATGCTCTGGTTTTATCCATC 59.116 41.667 0.00 0.00 36.84 3.51
2869 5135 2.887152 GGAGTTTGTCATGCTCTGGTTT 59.113 45.455 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.