Multiple sequence alignment - TraesCS3B01G184900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G184900 chr3B 100.000 8248 0 0 1 8248 200855873 200864120 0.000000e+00 15232.0
1 TraesCS3B01G184900 chr3B 99.074 864 8 0 1 864 200830964 200831827 0.000000e+00 1552.0
2 TraesCS3B01G184900 chr3D 91.571 3488 164 51 849 4304 137477264 137480653 0.000000e+00 4693.0
3 TraesCS3B01G184900 chr3D 89.992 1329 54 23 4894 6182 137481118 137482407 0.000000e+00 1644.0
4 TraesCS3B01G184900 chr3D 93.809 953 44 5 6846 7797 137483085 137484023 0.000000e+00 1419.0
5 TraesCS3B01G184900 chr3D 91.199 659 29 4 6175 6824 137482464 137483102 0.000000e+00 869.0
6 TraesCS3B01G184900 chr3D 92.670 382 18 9 4439 4814 137480744 137481121 7.280000e-150 542.0
7 TraesCS3B01G184900 chr3D 89.600 250 20 1 7997 8246 137484262 137484505 6.220000e-81 313.0
8 TraesCS3B01G184900 chr3D 85.714 161 6 2 7845 7998 137484030 137484180 3.990000e-33 154.0
9 TraesCS3B01G184900 chr3D 98.276 58 1 0 8101 8158 468985557 468985500 1.460000e-17 102.0
10 TraesCS3B01G184900 chr3A 90.657 3457 172 61 849 4261 155420320 155423669 0.000000e+00 4455.0
11 TraesCS3B01G184900 chr3A 89.805 1334 57 19 4894 6182 155424138 155425437 0.000000e+00 1637.0
12 TraesCS3B01G184900 chr3A 93.463 719 46 1 6846 7563 155426137 155426855 0.000000e+00 1066.0
13 TraesCS3B01G184900 chr3A 90.453 618 45 12 6175 6791 155425502 155426106 0.000000e+00 802.0
14 TraesCS3B01G184900 chr3A 95.470 287 9 4 7559 7843 155427198 155427482 9.760000e-124 455.0
15 TraesCS3B01G184900 chr3A 88.281 384 18 14 4440 4814 155423776 155424141 1.270000e-117 435.0
16 TraesCS3B01G184900 chr3A 87.137 241 25 3 7997 8237 155427668 155427902 1.360000e-67 268.0
17 TraesCS3B01G184900 chr3A 88.732 71 1 1 7935 7998 155427484 155427554 6.860000e-11 80.5
18 TraesCS3B01G184900 chr5D 96.108 848 33 0 1 848 353958191 353959038 0.000000e+00 1384.0
19 TraesCS3B01G184900 chr4D 95.188 852 40 1 1 852 39368913 39368063 0.000000e+00 1345.0
20 TraesCS3B01G184900 chr4D 94.811 848 40 1 1 848 345355712 345356555 0.000000e+00 1319.0
21 TraesCS3B01G184900 chr4D 93.939 66 2 2 8099 8162 108302738 108302673 1.890000e-16 99.0
22 TraesCS3B01G184900 chr1D 95.165 848 39 2 1 848 445569032 445569877 0.000000e+00 1338.0
23 TraesCS3B01G184900 chr1D 95.154 846 41 0 3 848 481926440 481927285 0.000000e+00 1336.0
24 TraesCS3B01G184900 chr7D 95.159 847 38 3 1 847 474490581 474489738 0.000000e+00 1334.0
25 TraesCS3B01G184900 chr7D 94.817 849 42 2 1 848 505348164 505349011 0.000000e+00 1323.0
26 TraesCS3B01G184900 chr7D 94.811 848 43 1 1 848 621163186 621164032 0.000000e+00 1321.0
27 TraesCS3B01G184900 chr7D 92.481 133 7 3 7566 7697 164235803 164235673 3.930000e-43 187.0
28 TraesCS3B01G184900 chr7D 84.810 79 11 1 8169 8246 536485004 536485082 2.470000e-10 78.7
29 TraesCS3B01G184900 chr7D 86.364 66 8 1 8181 8245 205155862 205155797 4.130000e-08 71.3
30 TraesCS3B01G184900 chr7D 82.051 78 13 1 8169 8245 432496791 432496714 1.920000e-06 65.8
31 TraesCS3B01G184900 chr7B 86.261 575 37 18 5623 6167 727012070 727012632 3.320000e-163 586.0
32 TraesCS3B01G184900 chr7B 97.802 91 2 0 4811 4901 428966843 428966933 3.080000e-34 158.0
33 TraesCS3B01G184900 chr2B 93.750 128 6 2 7566 7692 357542469 357542343 3.040000e-44 191.0
34 TraesCS3B01G184900 chr2B 97.872 94 2 0 4811 4904 354879125 354879218 6.620000e-36 163.0
35 TraesCS3B01G184900 chr2B 93.939 66 4 0 8093 8158 404163601 404163536 5.270000e-17 100.0
36 TraesCS3B01G184900 chrUn 92.481 133 7 3 7566 7697 170991314 170991184 3.930000e-43 187.0
37 TraesCS3B01G184900 chrUn 92.481 133 7 3 7566 7697 369616844 369616974 3.930000e-43 187.0
38 TraesCS3B01G184900 chr6B 92.481 133 7 3 7566 7697 307010820 307010690 3.930000e-43 187.0
39 TraesCS3B01G184900 chr6B 96.667 90 3 0 4807 4896 654053514 654053425 5.160000e-32 150.0
40 TraesCS3B01G184900 chr1A 92.481 133 7 3 7566 7697 94563327 94563197 3.930000e-43 187.0
41 TraesCS3B01G184900 chr1A 92.481 133 7 3 7566 7697 94795077 94794947 3.930000e-43 187.0
42 TraesCS3B01G184900 chr1A 88.060 67 8 0 8180 8246 21676215 21676281 6.860000e-11 80.5
43 TraesCS3B01G184900 chr1A 85.075 67 10 0 8181 8247 513158210 513158144 1.490000e-07 69.4
44 TraesCS3B01G184900 chr1A 100.000 28 0 0 1697 1724 524904946 524904919 1.500000e-02 52.8
45 TraesCS3B01G184900 chr4A 95.918 98 2 1 4811 4906 616959239 616959142 3.080000e-34 158.0
46 TraesCS3B01G184900 chr4A 96.667 60 2 0 8101 8160 570916210 570916151 5.270000e-17 100.0
47 TraesCS3B01G184900 chr2A 96.809 94 3 0 4811 4904 361381703 361381610 3.080000e-34 158.0
48 TraesCS3B01G184900 chr2A 95.876 97 3 1 4810 4906 591749093 591748998 1.110000e-33 156.0
49 TraesCS3B01G184900 chr4B 96.774 93 2 1 4805 4897 37192995 37193086 3.990000e-33 154.0
50 TraesCS3B01G184900 chr4B 96.739 92 3 0 4808 4899 192792834 192792743 3.990000e-33 154.0
51 TraesCS3B01G184900 chr4B 92.537 67 5 0 8094 8160 116483370 116483436 6.810000e-16 97.1
52 TraesCS3B01G184900 chr6D 90.179 112 10 1 4793 4903 120647216 120647327 2.400000e-30 145.0
53 TraesCS3B01G184900 chr6A 92.647 68 4 1 8093 8159 74634080 74634147 6.810000e-16 97.1
54 TraesCS3B01G184900 chr6A 93.846 65 2 2 8095 8158 507116979 507116916 6.810000e-16 97.1
55 TraesCS3B01G184900 chr6A 86.364 66 8 1 8181 8245 223798235 223798170 4.130000e-08 71.3
56 TraesCS3B01G184900 chr6A 84.507 71 10 1 8165 8235 613743691 613743622 1.490000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G184900 chr3B 200855873 200864120 8247 False 15232.000000 15232 100.000000 1 8248 1 chr3B.!!$F2 8247
1 TraesCS3B01G184900 chr3B 200830964 200831827 863 False 1552.000000 1552 99.074000 1 864 1 chr3B.!!$F1 863
2 TraesCS3B01G184900 chr3D 137477264 137484505 7241 False 1376.285714 4693 90.650714 849 8246 7 chr3D.!!$F1 7397
3 TraesCS3B01G184900 chr3A 155420320 155427902 7582 False 1149.812500 4455 90.499750 849 8237 8 chr3A.!!$F1 7388
4 TraesCS3B01G184900 chr5D 353958191 353959038 847 False 1384.000000 1384 96.108000 1 848 1 chr5D.!!$F1 847
5 TraesCS3B01G184900 chr4D 39368063 39368913 850 True 1345.000000 1345 95.188000 1 852 1 chr4D.!!$R1 851
6 TraesCS3B01G184900 chr4D 345355712 345356555 843 False 1319.000000 1319 94.811000 1 848 1 chr4D.!!$F1 847
7 TraesCS3B01G184900 chr1D 445569032 445569877 845 False 1338.000000 1338 95.165000 1 848 1 chr1D.!!$F1 847
8 TraesCS3B01G184900 chr1D 481926440 481927285 845 False 1336.000000 1336 95.154000 3 848 1 chr1D.!!$F2 845
9 TraesCS3B01G184900 chr7D 474489738 474490581 843 True 1334.000000 1334 95.159000 1 847 1 chr7D.!!$R4 846
10 TraesCS3B01G184900 chr7D 505348164 505349011 847 False 1323.000000 1323 94.817000 1 848 1 chr7D.!!$F1 847
11 TraesCS3B01G184900 chr7D 621163186 621164032 846 False 1321.000000 1321 94.811000 1 848 1 chr7D.!!$F3 847
12 TraesCS3B01G184900 chr7B 727012070 727012632 562 False 586.000000 586 86.261000 5623 6167 1 chr7B.!!$F2 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.878416 GCTACATGGTGGCGTTCAAA 59.122 50.0 0.00 0.0 29.24 2.69 F
1779 1795 0.032217 AAGAGGAGGCAGAGGAGGAG 60.032 60.0 0.00 0.0 0.00 3.69 F
2601 2627 0.242017 GTGAGTGCCATTTGCCTGTC 59.758 55.0 0.00 0.0 40.16 3.51 F
4026 4103 1.017177 TCCTCGCCGAATTTCAACCG 61.017 55.0 0.00 0.0 0.00 4.44 F
4369 4447 0.107897 CGTATGCACCAGGCTACCAA 60.108 55.0 0.00 0.0 45.15 3.67 F
4421 4499 0.179018 ATTACCTGCAGATTCCCCGC 60.179 55.0 17.39 0.0 0.00 6.13 F
4429 4507 0.322456 CAGATTCCCCGCAGTTCCAA 60.322 55.0 0.00 0.0 0.00 3.53 F
5960 6075 0.392998 ATAACCCACTGCTTCGGCTG 60.393 55.0 0.00 0.0 43.97 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1906 0.324614 TCTTGCCTTGATTCGGAGCA 59.675 50.000 0.00 0.00 0.00 4.26 R
3244 3270 0.095935 CCTCTGCAAGCATTTCGACG 59.904 55.000 0.00 0.00 0.00 5.12 R
4350 4428 0.107897 TTGGTAGCCTGGTGCATACG 60.108 55.000 0.00 0.00 44.83 3.06 R
5985 6100 0.106819 GCTCCATGATGGCTCCACTT 60.107 55.000 6.59 0.00 37.47 3.16 R
5986 6101 1.530771 GCTCCATGATGGCTCCACT 59.469 57.895 6.59 0.00 37.47 4.00 R
5987 6102 1.890979 CGCTCCATGATGGCTCCAC 60.891 63.158 6.59 0.00 37.47 4.02 R
6392 6631 3.681593 ACCGCACACAAGTATAATTGGT 58.318 40.909 16.58 9.02 34.36 3.67 R
7888 8505 0.177141 CGGCGGAGGAGAATAAACCA 59.823 55.000 0.00 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
320 321 0.878416 GCTACATGGTGGCGTTCAAA 59.122 50.000 0.00 0.00 29.24 2.69
866 867 2.616842 CCCGTAATGATTTGGCACTACC 59.383 50.000 0.00 0.00 39.84 3.18
879 880 1.341531 GCACTACCAGTCTGTGTCACT 59.658 52.381 4.27 0.00 34.52 3.41
885 886 1.539065 CCAGTCTGTGTCACTCACCAC 60.539 57.143 4.27 0.00 45.61 4.16
971 977 5.765182 ACGTCAGACCAAATCTCATCTTTTT 59.235 36.000 0.00 0.00 34.41 1.94
1042 1048 4.728058 GACCAGATCGAGCTGCTC 57.272 61.111 24.94 17.28 34.56 4.26
1043 1049 2.114638 GACCAGATCGAGCTGCTCT 58.885 57.895 24.94 9.19 34.56 4.09
1134 1140 3.553922 CCTCTTTCTGACACACTGGAGAC 60.554 52.174 0.00 0.00 0.00 3.36
1157 1163 5.948742 TCATACAGTGAGAGAGAGAGAGA 57.051 43.478 0.00 0.00 31.80 3.10
1158 1164 5.917462 TCATACAGTGAGAGAGAGAGAGAG 58.083 45.833 0.00 0.00 31.80 3.20
1159 1165 5.660864 TCATACAGTGAGAGAGAGAGAGAGA 59.339 44.000 0.00 0.00 31.80 3.10
1160 1166 4.478206 ACAGTGAGAGAGAGAGAGAGAG 57.522 50.000 0.00 0.00 0.00 3.20
1161 1167 4.096681 ACAGTGAGAGAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
1162 1168 4.161189 ACAGTGAGAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
1221 1227 2.187424 GCAGAGCAGAGCAGAGGG 59.813 66.667 0.00 0.00 0.00 4.30
1223 1229 1.685077 CAGAGCAGAGCAGAGGGGA 60.685 63.158 0.00 0.00 0.00 4.81
1225 1231 1.381056 GAGCAGAGCAGAGGGGAGA 60.381 63.158 0.00 0.00 0.00 3.71
1437 1444 2.668550 GGCGGCGTCAAGGTCTTT 60.669 61.111 6.63 0.00 0.00 2.52
1729 1739 1.228154 GTGGTGGTGGAGGTGGAAC 60.228 63.158 0.00 0.00 0.00 3.62
1779 1795 0.032217 AAGAGGAGGCAGAGGAGGAG 60.032 60.000 0.00 0.00 0.00 3.69
1780 1796 1.457455 GAGGAGGCAGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
1781 1797 1.938596 AGGAGGCAGAGGAGGAGGA 60.939 63.158 0.00 0.00 0.00 3.71
1782 1798 1.457455 GGAGGCAGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
1783 1799 1.457455 GAGGCAGAGGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
1884 1906 0.603569 ACGAAACTGATCAGGCGACT 59.396 50.000 29.13 13.75 46.44 4.18
1990 2012 2.552585 ATTTGGCGTCATGCTGCAGC 62.553 55.000 31.89 31.89 45.43 5.25
2046 2068 3.182182 GAGAGCAAATTCGGATTTTGCC 58.818 45.455 31.11 24.98 33.25 4.52
2047 2069 2.827921 AGAGCAAATTCGGATTTTGCCT 59.172 40.909 31.11 26.13 33.25 4.75
2048 2070 3.259123 AGAGCAAATTCGGATTTTGCCTT 59.741 39.130 31.11 22.34 33.25 4.35
2049 2071 3.996363 GAGCAAATTCGGATTTTGCCTTT 59.004 39.130 31.11 20.67 33.25 3.11
2050 2072 3.747529 AGCAAATTCGGATTTTGCCTTTG 59.252 39.130 31.11 12.66 33.25 2.77
2051 2073 3.498018 GCAAATTCGGATTTTGCCTTTGT 59.502 39.130 27.52 0.00 33.25 2.83
2091 2117 5.046910 TCGATTTGGCAATTCTTCTTGTC 57.953 39.130 17.21 0.00 0.00 3.18
2168 2194 3.122297 CCGATTGAAGATGAGAGAGCAC 58.878 50.000 0.00 0.00 0.00 4.40
2169 2195 3.181477 CCGATTGAAGATGAGAGAGCACT 60.181 47.826 0.00 0.00 0.00 4.40
2183 2209 3.059982 CACTCAACCCAGAGCCGA 58.940 61.111 0.00 0.00 39.26 5.54
2184 2210 1.374758 CACTCAACCCAGAGCCGAC 60.375 63.158 0.00 0.00 39.26 4.79
2197 2223 2.556287 CCGACGAAACTTGCTGCC 59.444 61.111 0.00 0.00 0.00 4.85
2206 2232 2.063541 AACTTGCTGCCGCTGTCAAC 62.064 55.000 0.70 0.00 36.97 3.18
2240 2266 2.593978 CAGAGCCCATGACCCCTG 59.406 66.667 0.00 0.00 0.00 4.45
2285 2311 1.791555 GCAGAACGGTGCGAATTCATG 60.792 52.381 6.22 0.00 32.74 3.07
2411 2437 3.075148 GCAAGAACTTCTCCAGGTAACC 58.925 50.000 0.00 0.00 37.17 2.85
2470 2496 4.695217 TTGCATTTCCCGAGTTAATGTC 57.305 40.909 0.00 0.00 33.04 3.06
2494 2520 6.757010 TCAATCGGCTACTTCAAATAAGAGAC 59.243 38.462 0.00 0.00 0.00 3.36
2565 2591 1.743252 CCCGAAGCAAGAGCCTGTC 60.743 63.158 0.00 0.00 43.56 3.51
2601 2627 0.242017 GTGAGTGCCATTTGCCTGTC 59.758 55.000 0.00 0.00 40.16 3.51
2623 2649 1.673329 GGCCGTTCCTTCTCAGTTCTC 60.673 57.143 0.00 0.00 0.00 2.87
2626 2652 1.715993 GTTCCTTCTCAGTTCTCGGC 58.284 55.000 0.00 0.00 0.00 5.54
2651 2677 7.093945 GCCTTCTTCTTATTTGGTGGTTTATCA 60.094 37.037 0.00 0.00 0.00 2.15
2654 2680 8.208718 TCTTCTTATTTGGTGGTTTATCATCG 57.791 34.615 0.00 0.00 0.00 3.84
2655 2681 8.044309 TCTTCTTATTTGGTGGTTTATCATCGA 58.956 33.333 0.00 0.00 0.00 3.59
2685 2711 5.640158 TTGTTGGTTCTAAAGAGGAGGAA 57.360 39.130 0.00 0.00 0.00 3.36
2686 2712 5.228945 TGTTGGTTCTAAAGAGGAGGAAG 57.771 43.478 0.00 0.00 0.00 3.46
2687 2713 4.905456 TGTTGGTTCTAAAGAGGAGGAAGA 59.095 41.667 0.00 0.00 0.00 2.87
2772 2798 5.477607 ACATTGGTTAGTGCTGTACTACA 57.522 39.130 5.05 0.00 41.48 2.74
2779 2805 3.928727 AGTGCTGTACTACACGCTTTA 57.071 42.857 11.52 0.00 41.72 1.85
2780 2806 3.834610 AGTGCTGTACTACACGCTTTAG 58.165 45.455 11.52 0.00 41.72 1.85
2781 2807 3.504906 AGTGCTGTACTACACGCTTTAGA 59.495 43.478 11.52 0.00 41.72 2.10
2782 2808 4.158025 AGTGCTGTACTACACGCTTTAGAT 59.842 41.667 11.52 0.00 41.72 1.98
2783 2809 4.265556 GTGCTGTACTACACGCTTTAGATG 59.734 45.833 3.59 0.00 0.00 2.90
2854 2880 8.608185 AAAATAGATTGGATGGCTTTTCCTTA 57.392 30.769 3.92 0.00 34.17 2.69
2868 2894 6.708502 GGCTTTTCCTTAGTTTATTTTTGGCA 59.291 34.615 0.00 0.00 0.00 4.92
2998 3024 3.971032 ACTTCAAGTAAGTTGCTGCAC 57.029 42.857 0.00 0.00 46.61 4.57
3010 3036 5.215252 AGTTGCTGCACTCTTACTCTTAA 57.785 39.130 0.00 0.00 0.00 1.85
3011 3037 5.799213 AGTTGCTGCACTCTTACTCTTAAT 58.201 37.500 0.00 0.00 0.00 1.40
3012 3038 5.872070 AGTTGCTGCACTCTTACTCTTAATC 59.128 40.000 0.00 0.00 0.00 1.75
3013 3039 4.424626 TGCTGCACTCTTACTCTTAATCG 58.575 43.478 0.00 0.00 0.00 3.34
3016 3042 3.194755 TGCACTCTTACTCTTAATCGGCA 59.805 43.478 0.00 0.00 0.00 5.69
3017 3043 4.181578 GCACTCTTACTCTTAATCGGCAA 58.818 43.478 0.00 0.00 0.00 4.52
3018 3044 4.630069 GCACTCTTACTCTTAATCGGCAAA 59.370 41.667 0.00 0.00 0.00 3.68
3023 3049 7.390718 ACTCTTACTCTTAATCGGCAAACAAAT 59.609 33.333 0.00 0.00 0.00 2.32
3027 3053 9.615295 TTACTCTTAATCGGCAAACAAATAAAC 57.385 29.630 0.00 0.00 0.00 2.01
3028 3054 7.088272 ACTCTTAATCGGCAAACAAATAAACC 58.912 34.615 0.00 0.00 0.00 3.27
3033 3059 4.950050 TCGGCAAACAAATAAACCAACAT 58.050 34.783 0.00 0.00 0.00 2.71
3040 3066 8.125448 GCAAACAAATAAACCAACATTTTAGCA 58.875 29.630 0.00 0.00 0.00 3.49
3078 3104 6.721208 AGCATTCCTTTAAAACCTCTCAATCA 59.279 34.615 0.00 0.00 0.00 2.57
3096 3122 1.530720 TCACACAGCACAATAACAGCG 59.469 47.619 0.00 0.00 0.00 5.18
3164 3190 6.014070 TGCAAGTCCTTACTCAACAGGTAATA 60.014 38.462 0.00 0.00 33.75 0.98
3165 3191 6.877322 GCAAGTCCTTACTCAACAGGTAATAA 59.123 38.462 0.00 0.00 33.75 1.40
3166 3192 7.553044 GCAAGTCCTTACTCAACAGGTAATAAT 59.447 37.037 0.00 0.00 33.75 1.28
3226 3252 8.480133 AATCTTCCCCTGTGTACTATTAGTAG 57.520 38.462 3.75 0.00 30.12 2.57
3247 3273 5.813080 AGTAATTAATCCACCTTTGCGTC 57.187 39.130 0.00 0.00 0.00 5.19
3299 3325 5.987953 AGTGTGATGATGAGACGAATAATGG 59.012 40.000 0.00 0.00 0.00 3.16
3465 3502 3.570125 CAGCTAGCACAGGCATAGTAGTA 59.430 47.826 18.83 0.00 44.61 1.82
3503 3540 2.046283 TTTGTACTGACAGAGCGACG 57.954 50.000 10.08 0.00 36.76 5.12
3566 3603 3.284617 GTGTGGTAACTTTGTCACCCTT 58.715 45.455 0.00 0.00 37.61 3.95
3629 3687 7.453126 TCTGTCTAGTCTTCTCTTCCTCATTTT 59.547 37.037 0.00 0.00 0.00 1.82
3638 3696 8.772250 TCTTCTCTTCCTCATTTTACCATGTAT 58.228 33.333 0.00 0.00 0.00 2.29
3645 3703 8.657074 TCCTCATTTTACCATGTATCTAAACG 57.343 34.615 0.00 0.00 0.00 3.60
3653 3711 9.438228 TTTACCATGTATCTAAACGAATGTTCA 57.562 29.630 0.00 0.00 37.31 3.18
3654 3712 7.539712 ACCATGTATCTAAACGAATGTTCAG 57.460 36.000 0.00 0.00 37.31 3.02
3655 3713 7.327975 ACCATGTATCTAAACGAATGTTCAGA 58.672 34.615 0.00 0.00 36.79 3.27
3656 3714 7.822334 ACCATGTATCTAAACGAATGTTCAGAA 59.178 33.333 0.00 0.00 35.98 3.02
3657 3715 8.664798 CCATGTATCTAAACGAATGTTCAGAAA 58.335 33.333 0.00 0.00 35.98 2.52
3658 3716 9.478019 CATGTATCTAAACGAATGTTCAGAAAC 57.522 33.333 0.00 0.00 35.98 2.78
3659 3717 8.827177 TGTATCTAAACGAATGTTCAGAAACT 57.173 30.769 0.00 0.00 35.98 2.66
3660 3718 8.708742 TGTATCTAAACGAATGTTCAGAAACTG 58.291 33.333 0.00 0.00 35.98 3.16
3661 3719 7.962964 ATCTAAACGAATGTTCAGAAACTGA 57.037 32.000 0.00 0.00 35.98 3.41
3662 3720 7.780008 TCTAAACGAATGTTCAGAAACTGAA 57.220 32.000 9.67 9.67 46.50 3.02
3673 3731 6.975196 TTCAGAAACTGAATGGGAAATGAA 57.025 33.333 9.67 0.00 44.27 2.57
3674 3732 7.543359 TTCAGAAACTGAATGGGAAATGAAT 57.457 32.000 9.67 0.00 44.27 2.57
3675 3733 7.161773 TCAGAAACTGAATGGGAAATGAATC 57.838 36.000 0.00 0.00 37.57 2.52
3676 3734 6.720748 TCAGAAACTGAATGGGAAATGAATCA 59.279 34.615 0.00 0.00 37.57 2.57
3677 3735 7.398047 TCAGAAACTGAATGGGAAATGAATCAT 59.602 33.333 0.00 0.00 37.57 2.45
3678 3736 7.491372 CAGAAACTGAATGGGAAATGAATCATG 59.509 37.037 0.00 0.00 32.44 3.07
3747 3808 5.163447 ACAGCCTTGCTTTAGTCGTATATGA 60.163 40.000 0.00 0.00 36.40 2.15
3905 3966 2.681706 CAGCTCGCCAGATATGGTAAG 58.318 52.381 8.44 6.98 0.00 2.34
3906 3967 2.036475 CAGCTCGCCAGATATGGTAAGT 59.964 50.000 8.44 0.00 0.00 2.24
3910 3979 2.169561 TCGCCAGATATGGTAAGTGCAA 59.830 45.455 8.44 0.00 0.00 4.08
3973 4050 2.450960 TTCGACCAAAATGCCACGCG 62.451 55.000 3.53 3.53 0.00 6.01
3993 4070 4.579270 CGCAAAGCAACTTACCTACTAC 57.421 45.455 0.00 0.00 0.00 2.73
4000 4077 3.629398 GCAACTTACCTACTACCTCGCTA 59.371 47.826 0.00 0.00 0.00 4.26
4026 4103 1.017177 TCCTCGCCGAATTTCAACCG 61.017 55.000 0.00 0.00 0.00 4.44
4044 4121 9.857957 TTTCAACCGTTATTGGGATTAATTTAC 57.142 29.630 0.00 0.00 0.00 2.01
4079 4156 4.898861 GCCTTACATTTTTCCATGGGGATA 59.101 41.667 13.02 0.00 44.48 2.59
4099 4176 7.426606 GGATAGCCCCTTTGGTTTTTAATAA 57.573 36.000 0.00 0.00 36.04 1.40
4100 4177 8.029782 GGATAGCCCCTTTGGTTTTTAATAAT 57.970 34.615 0.00 0.00 36.04 1.28
4101 4178 9.150028 GGATAGCCCCTTTGGTTTTTAATAATA 57.850 33.333 0.00 0.00 36.04 0.98
4103 4180 9.945633 ATAGCCCCTTTGGTTTTTAATAATAGA 57.054 29.630 0.00 0.00 36.04 1.98
4131 4208 4.142049 TGGTTGTTGGATCCAAGTTTTGTC 60.142 41.667 27.73 14.08 36.52 3.18
4150 4227 1.749063 TCCACTGCGACATGGTAGTAG 59.251 52.381 0.00 0.00 37.27 2.57
4216 4293 7.126726 TGTGCATAGGTAAAGGACTAGGTAAAT 59.873 37.037 0.00 0.00 0.00 1.40
4218 4295 9.216148 TGCATAGGTAAAGGACTAGGTAAATTA 57.784 33.333 0.00 0.00 0.00 1.40
4226 4303 6.229936 AGGACTAGGTAAATTAATGTGCGA 57.770 37.500 0.00 0.00 0.00 5.10
4227 4304 6.827727 AGGACTAGGTAAATTAATGTGCGAT 58.172 36.000 0.00 0.00 0.00 4.58
4228 4305 6.706270 AGGACTAGGTAAATTAATGTGCGATG 59.294 38.462 0.00 0.00 0.00 3.84
4229 4306 6.073222 GGACTAGGTAAATTAATGTGCGATGG 60.073 42.308 0.00 0.00 0.00 3.51
4230 4307 6.588204 ACTAGGTAAATTAATGTGCGATGGA 58.412 36.000 0.00 0.00 0.00 3.41
4261 4338 5.470098 TGTGAGCAGGACAGAAGAATTTTAC 59.530 40.000 0.00 0.00 0.00 2.01
4262 4339 5.703130 GTGAGCAGGACAGAAGAATTTTACT 59.297 40.000 0.00 0.00 0.00 2.24
4264 4341 7.550906 GTGAGCAGGACAGAAGAATTTTACTAT 59.449 37.037 0.00 0.00 0.00 2.12
4265 4342 7.766278 TGAGCAGGACAGAAGAATTTTACTATC 59.234 37.037 0.00 0.00 0.00 2.08
4267 4344 8.103305 AGCAGGACAGAAGAATTTTACTATCAA 58.897 33.333 0.00 0.00 0.00 2.57
4288 4366 7.549147 TCAAAACAAGGTAGTACTCCACTAT 57.451 36.000 0.00 0.00 41.77 2.12
4290 4368 8.746530 TCAAAACAAGGTAGTACTCCACTATAG 58.253 37.037 0.00 0.00 41.77 1.31
4310 4388 9.019656 ACTATAGTGATTGTAAATTTGTTGGCA 57.980 29.630 4.10 0.00 0.00 4.92
4315 4393 7.714377 AGTGATTGTAAATTTGTTGGCATTTGA 59.286 29.630 0.00 0.00 0.00 2.69
4317 4395 5.921004 TGTAAATTTGTTGGCATTTGAGC 57.079 34.783 0.00 0.00 0.00 4.26
4318 4396 5.609423 TGTAAATTTGTTGGCATTTGAGCT 58.391 33.333 0.00 0.00 34.17 4.09
4319 4397 6.753180 TGTAAATTTGTTGGCATTTGAGCTA 58.247 32.000 0.00 0.00 34.17 3.32
4320 4398 6.644592 TGTAAATTTGTTGGCATTTGAGCTAC 59.355 34.615 0.00 0.00 34.17 3.58
4322 4400 6.588719 AATTTGTTGGCATTTGAGCTACTA 57.411 33.333 0.00 0.00 34.17 1.82
4323 4401 5.627499 TTTGTTGGCATTTGAGCTACTAG 57.373 39.130 0.00 0.00 34.17 2.57
4324 4402 4.286297 TGTTGGCATTTGAGCTACTAGT 57.714 40.909 0.00 0.00 34.17 2.57
4325 4403 5.414789 TGTTGGCATTTGAGCTACTAGTA 57.585 39.130 1.89 1.89 34.17 1.82
4326 4404 5.175859 TGTTGGCATTTGAGCTACTAGTAC 58.824 41.667 0.00 0.00 34.17 2.73
4327 4405 5.175859 GTTGGCATTTGAGCTACTAGTACA 58.824 41.667 0.00 0.00 34.17 2.90
4328 4406 5.614324 TGGCATTTGAGCTACTAGTACAT 57.386 39.130 0.00 0.00 34.17 2.29
4329 4407 6.724893 TGGCATTTGAGCTACTAGTACATA 57.275 37.500 0.00 0.00 34.17 2.29
4330 4408 7.303182 TGGCATTTGAGCTACTAGTACATAT 57.697 36.000 0.00 0.00 34.17 1.78
4331 4409 7.154656 TGGCATTTGAGCTACTAGTACATATG 58.845 38.462 13.46 13.46 34.17 1.78
4332 4410 6.091441 GGCATTTGAGCTACTAGTACATATGC 59.909 42.308 23.98 23.98 41.44 3.14
4333 4411 6.091441 GCATTTGAGCTACTAGTACATATGCC 59.909 42.308 22.78 13.10 38.73 4.40
4334 4412 5.723672 TTGAGCTACTAGTACATATGCCC 57.276 43.478 1.58 0.00 0.00 5.36
4335 4413 4.087182 TGAGCTACTAGTACATATGCCCC 58.913 47.826 1.58 0.00 0.00 5.80
4336 4414 3.442076 AGCTACTAGTACATATGCCCCC 58.558 50.000 1.58 0.00 0.00 5.40
4350 4428 4.792087 CCCCCGGTATACATGTGC 57.208 61.111 9.11 0.00 0.00 4.57
4351 4429 1.301401 CCCCCGGTATACATGTGCG 60.301 63.158 9.11 0.00 0.00 5.34
4352 4430 1.444250 CCCCGGTATACATGTGCGT 59.556 57.895 9.11 0.00 0.00 5.24
4353 4431 0.675083 CCCCGGTATACATGTGCGTA 59.325 55.000 9.11 0.00 0.00 4.42
4354 4432 1.274167 CCCCGGTATACATGTGCGTAT 59.726 52.381 9.11 0.00 36.13 3.06
4355 4433 2.333926 CCCGGTATACATGTGCGTATG 58.666 52.381 9.11 0.00 34.03 2.39
4356 4434 1.724623 CCGGTATACATGTGCGTATGC 59.275 52.381 9.11 0.00 43.20 3.14
4369 4447 0.107897 CGTATGCACCAGGCTACCAA 60.108 55.000 0.00 0.00 45.15 3.67
4371 4449 1.949525 GTATGCACCAGGCTACCAATG 59.050 52.381 0.00 0.00 45.15 2.82
4410 4488 5.462398 CACGAGTAGTGGATTAATTACCTGC 59.538 44.000 0.00 0.00 46.77 4.85
4411 4489 5.128171 ACGAGTAGTGGATTAATTACCTGCA 59.872 40.000 0.00 0.00 0.00 4.41
4412 4490 5.692204 CGAGTAGTGGATTAATTACCTGCAG 59.308 44.000 6.78 6.78 0.00 4.41
4413 4491 6.461092 CGAGTAGTGGATTAATTACCTGCAGA 60.461 42.308 17.39 0.00 0.00 4.26
4414 4492 7.380423 AGTAGTGGATTAATTACCTGCAGAT 57.620 36.000 17.39 0.00 0.00 2.90
4416 4494 7.934120 AGTAGTGGATTAATTACCTGCAGATTC 59.066 37.037 17.39 0.00 0.00 2.52
4417 4495 6.064717 AGTGGATTAATTACCTGCAGATTCC 58.935 40.000 17.39 9.76 0.00 3.01
4418 4496 5.241728 GTGGATTAATTACCTGCAGATTCCC 59.758 44.000 17.39 9.76 0.00 3.97
4419 4497 4.767409 GGATTAATTACCTGCAGATTCCCC 59.233 45.833 17.39 5.83 0.00 4.81
4420 4498 2.348411 AATTACCTGCAGATTCCCCG 57.652 50.000 17.39 0.00 0.00 5.73
4421 4499 0.179018 ATTACCTGCAGATTCCCCGC 60.179 55.000 17.39 0.00 0.00 6.13
4422 4500 1.558167 TTACCTGCAGATTCCCCGCA 61.558 55.000 17.39 0.00 0.00 5.69
4424 4502 2.270205 CTGCAGATTCCCCGCAGT 59.730 61.111 8.42 0.00 46.36 4.40
4425 4503 1.377725 CTGCAGATTCCCCGCAGTT 60.378 57.895 8.42 0.00 46.36 3.16
4426 4504 1.372087 CTGCAGATTCCCCGCAGTTC 61.372 60.000 8.42 0.00 46.36 3.01
4429 4507 0.322456 CAGATTCCCCGCAGTTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
4430 4508 0.625849 AGATTCCCCGCAGTTCCAAT 59.374 50.000 0.00 0.00 0.00 3.16
4431 4509 1.843851 AGATTCCCCGCAGTTCCAATA 59.156 47.619 0.00 0.00 0.00 1.90
4432 4510 2.443255 AGATTCCCCGCAGTTCCAATAT 59.557 45.455 0.00 0.00 0.00 1.28
4433 4511 2.818751 TTCCCCGCAGTTCCAATATT 57.181 45.000 0.00 0.00 0.00 1.28
4434 4512 2.341846 TCCCCGCAGTTCCAATATTC 57.658 50.000 0.00 0.00 0.00 1.75
4435 4513 0.944386 CCCCGCAGTTCCAATATTCG 59.056 55.000 0.00 0.00 0.00 3.34
4436 4514 1.663695 CCCGCAGTTCCAATATTCGT 58.336 50.000 0.00 0.00 0.00 3.85
4437 4515 1.330521 CCCGCAGTTCCAATATTCGTG 59.669 52.381 0.00 0.00 0.00 4.35
4447 4525 6.823689 AGTTCCAATATTCGTGCTTATTCTGT 59.176 34.615 0.00 0.00 0.00 3.41
4469 4547 3.054434 TCATATGGGTACTTGTGCTTGCT 60.054 43.478 2.13 0.00 0.00 3.91
4473 4551 3.761897 TGGGTACTTGTGCTTGCTTATT 58.238 40.909 0.00 0.00 0.00 1.40
4625 4708 1.803334 TTGGAGAAAATGTCCCGTCG 58.197 50.000 0.00 0.00 32.49 5.12
4694 4778 1.779092 AGAGGGAGCATGCATGGTTAT 59.221 47.619 30.40 19.47 38.85 1.89
4702 4786 4.675510 AGCATGCATGGTTATTTTTCTCG 58.324 39.130 25.20 0.00 34.35 4.04
4779 4864 4.034394 TGAAATTGCACGATAGATGCTGTC 59.966 41.667 0.00 0.00 41.53 3.51
4810 4895 2.438021 TCCAGGTAGCTCACACTTTGTT 59.562 45.455 0.00 0.00 0.00 2.83
4811 4896 3.644265 TCCAGGTAGCTCACACTTTGTTA 59.356 43.478 0.00 0.00 0.00 2.41
4812 4897 3.746492 CCAGGTAGCTCACACTTTGTTAC 59.254 47.826 0.00 0.00 0.00 2.50
4813 4898 4.503296 CCAGGTAGCTCACACTTTGTTACT 60.503 45.833 0.00 0.00 0.00 2.24
4814 4899 4.686554 CAGGTAGCTCACACTTTGTTACTC 59.313 45.833 0.00 0.00 0.00 2.59
4815 4900 3.995048 GGTAGCTCACACTTTGTTACTCC 59.005 47.826 0.00 0.00 0.00 3.85
4816 4901 3.127425 AGCTCACACTTTGTTACTCCC 57.873 47.619 0.00 0.00 0.00 4.30
4817 4902 2.706190 AGCTCACACTTTGTTACTCCCT 59.294 45.455 0.00 0.00 0.00 4.20
4818 4903 3.067833 GCTCACACTTTGTTACTCCCTC 58.932 50.000 0.00 0.00 0.00 4.30
4819 4904 3.244249 GCTCACACTTTGTTACTCCCTCT 60.244 47.826 0.00 0.00 0.00 3.69
4820 4905 4.310769 CTCACACTTTGTTACTCCCTCTG 58.689 47.826 0.00 0.00 0.00 3.35
4821 4906 3.709653 TCACACTTTGTTACTCCCTCTGT 59.290 43.478 0.00 0.00 0.00 3.41
4822 4907 4.897076 TCACACTTTGTTACTCCCTCTGTA 59.103 41.667 0.00 0.00 0.00 2.74
4823 4908 5.364446 TCACACTTTGTTACTCCCTCTGTAA 59.636 40.000 0.00 0.00 0.00 2.41
4824 4909 6.053005 CACACTTTGTTACTCCCTCTGTAAA 58.947 40.000 0.00 0.00 32.58 2.01
4825 4910 6.018180 CACACTTTGTTACTCCCTCTGTAAAC 60.018 42.308 0.00 0.00 32.58 2.01
4826 4911 6.053005 CACTTTGTTACTCCCTCTGTAAACA 58.947 40.000 0.00 0.00 32.58 2.83
4827 4912 6.540914 CACTTTGTTACTCCCTCTGTAAACAA 59.459 38.462 0.00 0.00 32.58 2.83
4828 4913 7.066525 CACTTTGTTACTCCCTCTGTAAACAAA 59.933 37.037 9.88 9.88 34.29 2.83
4829 4914 7.778382 ACTTTGTTACTCCCTCTGTAAACAAAT 59.222 33.333 10.51 1.63 34.56 2.32
4830 4915 9.280174 CTTTGTTACTCCCTCTGTAAACAAATA 57.720 33.333 10.51 0.00 34.56 1.40
4831 4916 9.802039 TTTGTTACTCCCTCTGTAAACAAATAT 57.198 29.630 6.99 0.00 32.72 1.28
4837 4922 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
4838 4923 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
4839 4924 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
4840 4925 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
4841 4926 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
4849 4934 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
4856 4941 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
4857 4942 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
4858 4943 7.828712 AGAGCGTTTAGATCACTACTTTAGTT 58.171 34.615 0.00 0.00 37.82 2.24
4859 4944 8.954350 AGAGCGTTTAGATCACTACTTTAGTTA 58.046 33.333 0.00 0.00 37.82 2.24
4860 4945 9.733219 GAGCGTTTAGATCACTACTTTAGTTAT 57.267 33.333 0.00 0.00 36.76 1.89
4861 4946 9.733219 AGCGTTTAGATCACTACTTTAGTTATC 57.267 33.333 0.00 0.95 38.88 1.75
4862 4947 9.733219 GCGTTTAGATCACTACTTTAGTTATCT 57.267 33.333 12.46 12.46 46.18 1.98
4868 4953 9.733219 AGATCACTACTTTAGTTATCTAAACGC 57.267 33.333 7.85 0.00 43.99 4.84
4869 4954 9.733219 GATCACTACTTTAGTTATCTAAACGCT 57.267 33.333 2.47 0.00 40.05 5.07
4870 4955 9.733219 ATCACTACTTTAGTTATCTAAACGCTC 57.267 33.333 2.47 0.00 40.05 5.03
4871 4956 8.954350 TCACTACTTTAGTTATCTAAACGCTCT 58.046 33.333 2.47 0.00 40.05 4.09
4872 4957 9.570488 CACTACTTTAGTTATCTAAACGCTCTT 57.430 33.333 2.47 0.00 40.05 2.85
4886 4971 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
4887 4972 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
4888 4973 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
4889 4974 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
4890 4975 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
4891 4976 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
4892 4977 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
4956 5041 5.222048 GGGGCATCAATATTCCAGTAGGTTA 60.222 44.000 0.00 0.00 35.89 2.85
4972 5057 3.595021 AGGTTAACCTGTGGTCTACCTT 58.405 45.455 26.57 0.00 46.55 3.50
5068 5153 3.081804 CCAGTTGAGGCGGTTTTTAGAT 58.918 45.455 0.00 0.00 0.00 1.98
5094 5179 6.702716 AACCGGTGAAAAACAAAGATAAGA 57.297 33.333 8.52 0.00 0.00 2.10
5180 5270 8.879342 ATAAATAGAGTTTGACGAAGGATGAG 57.121 34.615 0.00 0.00 0.00 2.90
5202 5292 9.793259 ATGAGAACAGAACCTTACATCTTTTTA 57.207 29.630 0.00 0.00 0.00 1.52
5283 5376 2.369860 AGAATCTCACCAACTGCTGACA 59.630 45.455 0.00 0.00 0.00 3.58
5288 5381 0.599558 CACCAACTGCTGACATTGGG 59.400 55.000 13.64 2.63 46.03 4.12
5303 5396 3.201290 CATTGGGCTCATCAGTAGTGTC 58.799 50.000 0.00 0.00 0.00 3.67
5339 5433 6.833839 TGGTGTCGTTATGTGTTAATTTAGC 58.166 36.000 0.00 0.00 0.00 3.09
5457 5554 4.037923 GTGGTTTGGATATATGCACCCTTG 59.962 45.833 17.70 0.00 0.00 3.61
5470 5567 1.339929 CACCCTTGGTTTAGTTGGTGC 59.660 52.381 0.00 0.00 37.10 5.01
5471 5568 1.063567 ACCCTTGGTTTAGTTGGTGCA 60.064 47.619 0.00 0.00 27.29 4.57
5496 5593 2.579400 AGGGCGGGGTAATAAAACTTCT 59.421 45.455 0.00 0.00 0.00 2.85
5525 5623 7.481275 TTTGAAAAAGCTTTGCCTTATCTTG 57.519 32.000 13.54 0.00 0.00 3.02
5532 5637 6.502136 AGCTTTGCCTTATCTTGTAAACTC 57.498 37.500 0.00 0.00 0.00 3.01
5554 5659 8.553459 ACTCCATTGAACATAAACTCACTAAG 57.447 34.615 0.00 0.00 0.00 2.18
5571 5676 3.646637 ACTAAGTGGCCACTAACTGAACT 59.353 43.478 37.89 21.94 41.58 3.01
5750 5863 3.162202 TGTCCTGTTTTTGCATGTGTG 57.838 42.857 0.00 0.00 0.00 3.82
5784 5897 3.255642 CAGATCCCATCCAAACAAACGTT 59.744 43.478 0.00 0.00 0.00 3.99
5823 5936 3.175710 ACCTTCCGTTGTGGCCCT 61.176 61.111 0.00 0.00 37.80 5.19
5838 5951 2.717958 CCCTTAGGGCCCCTGTTTA 58.282 57.895 21.43 0.00 35.35 2.01
5960 6075 0.392998 ATAACCCACTGCTTCGGCTG 60.393 55.000 0.00 0.00 43.97 4.85
5983 6098 2.890371 GGCATTGCCTGGAAGCTG 59.110 61.111 20.66 0.00 46.69 4.24
5984 6099 2.718073 GGCATTGCCTGGAAGCTGG 61.718 63.158 20.66 0.00 46.69 4.85
5985 6100 1.679977 GCATTGCCTGGAAGCTGGA 60.680 57.895 0.00 0.00 0.00 3.86
5986 6101 1.252904 GCATTGCCTGGAAGCTGGAA 61.253 55.000 0.00 0.00 0.00 3.53
5987 6102 0.815734 CATTGCCTGGAAGCTGGAAG 59.184 55.000 0.00 0.00 0.00 3.46
6146 6313 5.482526 TGTTAAGGTGGTAGATAGCTTGTCA 59.517 40.000 0.00 0.00 36.62 3.58
6218 6457 7.148018 CCATTCAGGCATATACAACAAAGAAGT 60.148 37.037 0.00 0.00 0.00 3.01
6222 6461 6.092122 CAGGCATATACAACAAAGAAGTTCGA 59.908 38.462 0.00 0.00 0.00 3.71
6252 6491 4.524714 GGCTAGATCTAGTAGTTGATGCCA 59.475 45.833 26.73 0.00 35.65 4.92
6289 6528 7.099120 CCATTGCATTAAGCCTAAGTTTTTCT 58.901 34.615 0.00 0.00 44.83 2.52
6389 6628 8.251721 AGTGACACCAACTACATTAGTTCTATC 58.748 37.037 0.84 0.00 45.38 2.08
6392 6631 7.833786 ACACCAACTACATTAGTTCTATCGAA 58.166 34.615 0.00 0.00 45.38 3.71
6449 6699 5.420725 ACCTATACTTGTGTGCTTCATCA 57.579 39.130 0.00 0.00 0.00 3.07
6460 6710 0.174162 GCTTCATCATGGTGGCCAAC 59.826 55.000 15.99 15.99 36.95 3.77
6466 6716 6.446909 TTCATCATGGTGGCCAACTATATA 57.553 37.500 24.13 0.00 36.95 0.86
6467 6717 6.641161 TCATCATGGTGGCCAACTATATAT 57.359 37.500 24.13 3.01 36.95 0.86
6520 6770 3.627237 CCATAAACCCATGGTGCCTAGTT 60.627 47.826 11.73 3.37 40.62 2.24
6527 6777 3.136443 CCCATGGTGCCTAGTTCATTCTA 59.864 47.826 11.73 0.00 0.00 2.10
6597 6847 9.508567 GACATGTTCTAGAAATTAATTTGCTCC 57.491 33.333 17.98 3.92 0.00 4.70
6613 6863 1.144969 CTCCTTCGTTGCTGCGTAAA 58.855 50.000 0.00 0.00 0.00 2.01
6623 6873 5.406175 TCGTTGCTGCGTAAATTTACTTACT 59.594 36.000 22.57 0.00 30.87 2.24
6624 6874 6.585702 TCGTTGCTGCGTAAATTTACTTACTA 59.414 34.615 22.57 6.97 30.87 1.82
6654 6905 2.050350 GCTGTCCATGCATGCAGGT 61.050 57.895 28.58 9.91 0.00 4.00
6675 6926 2.755952 AGTTTTGGCTGGAGAGGTTT 57.244 45.000 0.00 0.00 0.00 3.27
6714 6965 1.376037 CTCCCACAAGAAGGCGGTC 60.376 63.158 0.00 0.00 0.00 4.79
6816 7082 1.630223 TGGCATGGCATCTTTGACAA 58.370 45.000 19.43 0.00 46.21 3.18
6817 7083 1.546923 TGGCATGGCATCTTTGACAAG 59.453 47.619 19.43 0.00 46.21 3.16
6818 7084 1.820519 GGCATGGCATCTTTGACAAGA 59.179 47.619 15.47 0.00 46.21 3.02
6819 7085 2.231964 GGCATGGCATCTTTGACAAGAA 59.768 45.455 15.47 0.00 46.21 2.52
6820 7086 3.248266 GCATGGCATCTTTGACAAGAAC 58.752 45.455 0.00 0.00 46.21 3.01
6821 7087 3.495193 CATGGCATCTTTGACAAGAACG 58.505 45.455 0.00 0.00 46.21 3.95
6822 7088 2.571212 TGGCATCTTTGACAAGAACGT 58.429 42.857 0.00 0.00 42.53 3.99
6823 7089 2.948979 TGGCATCTTTGACAAGAACGTT 59.051 40.909 0.00 0.00 42.53 3.99
6824 7090 3.380004 TGGCATCTTTGACAAGAACGTTT 59.620 39.130 0.46 0.00 42.53 3.60
6825 7091 4.142271 TGGCATCTTTGACAAGAACGTTTT 60.142 37.500 0.46 0.00 42.53 2.43
6826 7092 4.803613 GGCATCTTTGACAAGAACGTTTTT 59.196 37.500 0.46 0.00 42.53 1.94
6851 7117 6.732181 TTTTCTTTTTGCGAGAAATCTTCG 57.268 33.333 0.70 0.00 41.33 3.79
6852 7118 5.666969 TTCTTTTTGCGAGAAATCTTCGA 57.333 34.783 0.00 0.00 30.60 3.71
6853 7119 5.018695 TCTTTTTGCGAGAAATCTTCGAC 57.981 39.130 0.00 0.00 34.02 4.20
6867 7133 3.044986 TCTTCGACAAGAACGTTAACCG 58.955 45.455 0.00 1.21 35.57 4.44
6883 7149 3.843632 CCGTGTGTGTTTGACATGG 57.156 52.632 0.00 0.00 42.63 3.66
6944 7210 2.042831 GCAGCGCCTGATGGAGTTT 61.043 57.895 2.29 0.00 35.46 2.66
7055 7321 0.107508 AGGCACATGATCAAGGGTCG 60.108 55.000 0.00 0.00 0.00 4.79
7164 7430 3.303526 GCCAAGGTGTTAGTTTGTGTACG 60.304 47.826 0.00 0.00 0.00 3.67
7193 7459 1.308998 GTTGTGTGGGTGTTCTCCTG 58.691 55.000 0.00 0.00 0.00 3.86
7206 7472 5.123027 GGTGTTCTCCTGATGTTGAAGAATC 59.877 44.000 0.00 0.00 0.00 2.52
7209 7475 3.515502 TCTCCTGATGTTGAAGAATCCGT 59.484 43.478 0.00 0.00 0.00 4.69
7362 7629 1.084370 GGCAAAGGAGTCCGATGTCG 61.084 60.000 15.82 0.00 39.44 4.35
7446 7714 4.983215 GGTTAAAAATGCCTTTTCACCG 57.017 40.909 10.71 0.00 40.01 4.94
7450 7718 6.144886 GGTTAAAAATGCCTTTTCACCGTTAG 59.855 38.462 10.71 0.00 40.01 2.34
7464 7732 5.401550 TCACCGTTAGATTAAATTCGTCGT 58.598 37.500 0.00 0.00 0.00 4.34
7536 7804 4.330944 TGGAACATACTAATGGTAGGCG 57.669 45.455 0.00 0.00 37.43 5.52
7580 8195 5.669477 GTTAGACTTCTGATGCATTCCTCT 58.331 41.667 0.00 0.00 0.00 3.69
7598 8213 6.814954 TCCTCTTAGCCTAGATTTTCACAT 57.185 37.500 0.00 0.00 0.00 3.21
7658 8274 9.565090 TGAAATATCTGTATCCCTTCTTCAATG 57.435 33.333 0.00 0.00 0.00 2.82
7710 8326 1.573829 CGCAAAAAGGCTAGGACGCA 61.574 55.000 0.00 0.00 0.00 5.24
7734 8350 1.076024 TCTTGCAGAGGAAAGCCCAAT 59.924 47.619 0.00 0.00 37.41 3.16
7743 8359 4.706962 AGAGGAAAGCCCAATTAATGTCAC 59.293 41.667 0.00 0.00 37.41 3.67
7779 8395 7.554118 CCCGCACCTTATTAAGATCATATTGAT 59.446 37.037 4.96 0.00 40.34 2.57
7833 8450 7.164122 TCTGAAAGTGTGAGCTGAAATTCTAT 58.836 34.615 0.00 0.00 33.76 1.98
7843 8460 3.182572 GCTGAAATTCTATGGTACTCGCG 59.817 47.826 0.00 0.00 0.00 5.87
7851 8468 2.467566 ATGGTACTCGCGGTTCTTTT 57.532 45.000 6.13 0.00 0.00 2.27
7877 8494 6.290294 ACTCGGTCTATAGCTTGGTTTTAA 57.710 37.500 0.00 0.00 0.00 1.52
7882 8499 7.825270 TCGGTCTATAGCTTGGTTTTAAAATCA 59.175 33.333 9.86 9.86 0.00 2.57
7883 8500 8.455682 CGGTCTATAGCTTGGTTTTAAAATCAA 58.544 33.333 22.08 22.08 36.71 2.57
7890 8507 8.831715 AGCTTGGTTTTAAAATCAAACTATGG 57.168 30.769 22.36 13.54 38.43 2.74
7891 8508 8.428852 AGCTTGGTTTTAAAATCAAACTATGGT 58.571 29.630 22.36 15.15 38.43 3.55
7903 8520 8.753497 AATCAAACTATGGTTTATTCTCCTCC 57.247 34.615 6.89 0.00 42.96 4.30
7926 8543 1.202510 CGCTTCCCATCTTCCTCTCAG 60.203 57.143 0.00 0.00 0.00 3.35
7929 8546 1.769026 TCCCATCTTCCTCTCAGTCG 58.231 55.000 0.00 0.00 0.00 4.18
8032 8771 0.034616 GCACAGCTCTCAACTCACCT 59.965 55.000 0.00 0.00 0.00 4.00
8110 8849 7.974482 AGGGACACTTATTACAACTTTGTAC 57.026 36.000 1.18 0.00 42.84 2.90
8111 8850 7.742767 AGGGACACTTATTACAACTTTGTACT 58.257 34.615 1.18 0.00 42.84 2.73
8112 8851 8.873144 AGGGACACTTATTACAACTTTGTACTA 58.127 33.333 1.18 0.00 42.84 1.82
8113 8852 9.492973 GGGACACTTATTACAACTTTGTACTAA 57.507 33.333 1.18 6.56 42.84 2.24
8148 8887 8.792633 CAAAGTTGAGTCACTTATTTTGGGATA 58.207 33.333 0.00 0.00 35.87 2.59
8179 8918 4.589908 ACATTGGAGGACATGGTTTAGAC 58.410 43.478 0.00 0.00 0.00 2.59
8183 8922 4.843728 TGGAGGACATGGTTTAGACAATC 58.156 43.478 0.00 0.00 0.00 2.67
8184 8923 4.288366 TGGAGGACATGGTTTAGACAATCA 59.712 41.667 0.00 0.00 0.00 2.57
8187 8926 6.349363 GGAGGACATGGTTTAGACAATCAAAC 60.349 42.308 0.00 0.00 34.57 2.93
8216 8955 2.031420 GCTGTCGGTTCAGGTTTTTACC 60.031 50.000 0.00 0.00 36.12 2.85
8228 8967 0.467384 TTTTTACCGGTCGGACCACA 59.533 50.000 25.80 8.01 38.47 4.17
8246 8985 4.202243 ACCACAGGTTCATTGGTTCATTTG 60.202 41.667 0.00 0.00 40.98 2.32
8247 8986 3.742369 CACAGGTTCATTGGTTCATTTGC 59.258 43.478 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
320 321 1.362932 AGGGTGTATGGAGTGAGGAGT 59.637 52.381 0.00 0.00 0.00 3.85
788 789 7.229306 GCATTGAATATACTTCTCCATCCAACA 59.771 37.037 0.00 0.00 0.00 3.33
879 880 0.465460 GTGAGCCTTTGGTGTGGTGA 60.465 55.000 0.00 0.00 0.00 4.02
971 977 1.066858 GTGAAGGGATCGAGCAGTTGA 60.067 52.381 1.84 0.00 0.00 3.18
1153 1159 2.840038 TGCACTCTCTCTCTCTCTCTCT 59.160 50.000 0.00 0.00 0.00 3.10
1154 1160 3.118629 TCTGCACTCTCTCTCTCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
1155 1161 2.840038 TCTGCACTCTCTCTCTCTCTCT 59.160 50.000 0.00 0.00 0.00 3.10
1156 1162 3.201290 CTCTGCACTCTCTCTCTCTCTC 58.799 54.545 0.00 0.00 0.00 3.20
1157 1163 2.681976 GCTCTGCACTCTCTCTCTCTCT 60.682 54.545 0.00 0.00 0.00 3.10
1158 1164 1.672881 GCTCTGCACTCTCTCTCTCTC 59.327 57.143 0.00 0.00 0.00 3.20
1159 1165 1.004628 TGCTCTGCACTCTCTCTCTCT 59.995 52.381 0.00 0.00 31.71 3.10
1160 1166 1.462616 TGCTCTGCACTCTCTCTCTC 58.537 55.000 0.00 0.00 31.71 3.20
1161 1167 1.820519 CTTGCTCTGCACTCTCTCTCT 59.179 52.381 0.00 0.00 38.71 3.10
1162 1168 1.135024 CCTTGCTCTGCACTCTCTCTC 60.135 57.143 0.00 0.00 38.71 3.20
1221 1227 3.265995 TCACTAACAATTCCCCCTTCTCC 59.734 47.826 0.00 0.00 0.00 3.71
1223 1229 3.307480 CGTCACTAACAATTCCCCCTTCT 60.307 47.826 0.00 0.00 0.00 2.85
1225 1231 2.640826 TCGTCACTAACAATTCCCCCTT 59.359 45.455 0.00 0.00 0.00 3.95
1283 1290 6.389830 TTCTTCTAGATTAGCAGCTCTGAG 57.610 41.667 0.00 0.00 0.00 3.35
1779 1795 0.689412 CTTCCCACTCCTCCTCCTCC 60.689 65.000 0.00 0.00 0.00 4.30
1780 1796 0.336737 TCTTCCCACTCCTCCTCCTC 59.663 60.000 0.00 0.00 0.00 3.71
1781 1797 0.793617 TTCTTCCCACTCCTCCTCCT 59.206 55.000 0.00 0.00 0.00 3.69
1782 1798 1.199615 CTTCTTCCCACTCCTCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
1783 1799 2.107366 CTCTTCTTCCCACTCCTCCTC 58.893 57.143 0.00 0.00 0.00 3.71
1884 1906 0.324614 TCTTGCCTTGATTCGGAGCA 59.675 50.000 0.00 0.00 0.00 4.26
1990 2012 0.366871 CGCAAGATCTTGTTCGTCCG 59.633 55.000 30.88 22.00 42.31 4.79
2091 2117 4.577693 CACAGATAATCCCACCATCACAAG 59.422 45.833 0.00 0.00 0.00 3.16
2151 2177 4.562347 GGTTGAGTGCTCTCTCATCTTCAA 60.562 45.833 16.23 0.00 42.84 2.69
2168 2194 2.125912 CGTCGGCTCTGGGTTGAG 60.126 66.667 0.00 0.00 37.16 3.02
2169 2195 1.750341 TTTCGTCGGCTCTGGGTTGA 61.750 55.000 0.00 0.00 0.00 3.18
2173 2199 1.004918 AAGTTTCGTCGGCTCTGGG 60.005 57.895 0.00 0.00 0.00 4.45
2240 2266 1.283321 AGGGAGGAGAAATTCACCTGC 59.717 52.381 19.40 19.40 42.96 4.85
2285 2311 7.169813 GTCAGGAAAAATGGACTGAAAATTCAC 59.830 37.037 0.00 0.00 41.17 3.18
2294 2320 3.571401 AGCAAGTCAGGAAAAATGGACTG 59.429 43.478 0.00 0.00 40.29 3.51
2411 2437 4.858935 TCTCTTGGAAAATTCGCAACAAG 58.141 39.130 0.00 0.00 37.31 3.16
2459 2485 4.360563 AGTAGCCGATTGACATTAACTCG 58.639 43.478 0.00 0.00 0.00 4.18
2470 2496 6.535150 TGTCTCTTATTTGAAGTAGCCGATTG 59.465 38.462 0.00 0.00 0.00 2.67
2494 2520 7.439157 TCTTCTCTGAACAACACCAATAATG 57.561 36.000 0.00 0.00 0.00 1.90
2541 2567 0.453390 GCTCTTGCTTCGGGAAATGG 59.547 55.000 0.00 0.00 36.03 3.16
2550 2576 1.347817 CGTCGACAGGCTCTTGCTTC 61.348 60.000 17.16 0.00 39.59 3.86
2565 2591 1.455217 ACCAGGGGGAGTATCGTCG 60.455 63.158 0.00 0.00 38.05 5.12
2601 2627 2.125512 CTGAGAAGGAACGGCCGG 60.126 66.667 31.76 11.88 43.43 6.13
2623 2649 2.423538 CCACCAAATAAGAAGAAGGCCG 59.576 50.000 0.00 0.00 0.00 6.13
2626 2652 8.348285 TGATAAACCACCAAATAAGAAGAAGG 57.652 34.615 0.00 0.00 0.00 3.46
2651 2677 5.138125 AGAACCAACAAAAATGCATCGAT 57.862 34.783 0.00 0.00 0.00 3.59
2653 2679 6.640499 TCTTTAGAACCAACAAAAATGCATCG 59.360 34.615 0.00 0.00 0.00 3.84
2654 2680 7.116805 CCTCTTTAGAACCAACAAAAATGCATC 59.883 37.037 0.00 0.00 0.00 3.91
2655 2681 6.930722 CCTCTTTAGAACCAACAAAAATGCAT 59.069 34.615 0.00 0.00 0.00 3.96
2685 2711 4.449081 CCCTGGATCTCCTCATACTCTTCT 60.449 50.000 0.00 0.00 36.82 2.85
2686 2712 3.831911 CCCTGGATCTCCTCATACTCTTC 59.168 52.174 0.00 0.00 36.82 2.87
2687 2713 3.855668 CCCTGGATCTCCTCATACTCTT 58.144 50.000 0.00 0.00 36.82 2.85
2728 2754 2.159476 TCTGCATTCTTCGATTGCTTGC 60.159 45.455 10.76 6.39 38.98 4.01
2772 2798 3.000727 GCTGGTACAACATCTAAAGCGT 58.999 45.455 0.00 0.00 38.70 5.07
2779 2805 1.826385 GGCAAGCTGGTACAACATCT 58.174 50.000 0.00 0.00 38.70 2.90
2780 2806 0.447801 CGGCAAGCTGGTACAACATC 59.552 55.000 0.00 0.00 38.70 3.06
2781 2807 1.586154 GCGGCAAGCTGGTACAACAT 61.586 55.000 2.69 0.00 44.04 2.71
2782 2808 2.258013 GCGGCAAGCTGGTACAACA 61.258 57.895 2.69 0.00 44.04 3.33
2783 2809 2.561373 GCGGCAAGCTGGTACAAC 59.439 61.111 2.69 0.00 44.04 3.32
2839 2865 8.935844 CAAAAATAAACTAAGGAAAAGCCATCC 58.064 33.333 0.00 0.00 40.02 3.51
2845 2871 8.764287 CAGTGCCAAAAATAAACTAAGGAAAAG 58.236 33.333 0.00 0.00 0.00 2.27
2854 2880 7.821846 TGAAAAAGACAGTGCCAAAAATAAACT 59.178 29.630 0.00 0.00 0.00 2.66
2992 3018 3.799420 CCGATTAAGAGTAAGAGTGCAGC 59.201 47.826 0.00 0.00 0.00 5.25
2998 3024 6.721571 TTGTTTGCCGATTAAGAGTAAGAG 57.278 37.500 0.00 0.00 0.00 2.85
3010 3036 4.950050 TGTTGGTTTATTTGTTTGCCGAT 58.050 34.783 0.00 0.00 0.00 4.18
3011 3037 4.386867 TGTTGGTTTATTTGTTTGCCGA 57.613 36.364 0.00 0.00 0.00 5.54
3012 3038 5.665381 AATGTTGGTTTATTTGTTTGCCG 57.335 34.783 0.00 0.00 0.00 5.69
3013 3039 7.589587 GCTAAAATGTTGGTTTATTTGTTTGCC 59.410 33.333 0.00 0.00 0.00 4.52
3016 3042 9.389755 ACTGCTAAAATGTTGGTTTATTTGTTT 57.610 25.926 0.00 0.00 0.00 2.83
3017 3043 8.956533 ACTGCTAAAATGTTGGTTTATTTGTT 57.043 26.923 0.00 0.00 0.00 2.83
3027 3053 9.906660 TTAGACAATTTACTGCTAAAATGTTGG 57.093 29.630 1.91 0.00 36.50 3.77
3033 3059 9.840427 GAATGCTTAGACAATTTACTGCTAAAA 57.160 29.630 0.00 0.00 0.00 1.52
3048 3074 7.390718 TGAGAGGTTTTAAAGGAATGCTTAGAC 59.609 37.037 0.00 0.00 0.00 2.59
3054 3080 6.808704 GTGATTGAGAGGTTTTAAAGGAATGC 59.191 38.462 0.00 0.00 0.00 3.56
3068 3094 2.174363 TGTGCTGTGTGATTGAGAGG 57.826 50.000 0.00 0.00 0.00 3.69
3078 3104 0.874390 CCGCTGTTATTGTGCTGTGT 59.126 50.000 0.00 0.00 0.00 3.72
3096 3122 0.318762 CCAGGCCTAGATACGAAGCC 59.681 60.000 3.98 0.00 44.20 4.35
3174 3200 7.406916 TGCAGGTAAACTAATCTGGGATTTTA 58.593 34.615 0.00 0.00 0.00 1.52
3226 3252 4.330620 TCGACGCAAAGGTGGATTAATTAC 59.669 41.667 0.00 0.00 0.00 1.89
3244 3270 0.095935 CCTCTGCAAGCATTTCGACG 59.904 55.000 0.00 0.00 0.00 5.12
3247 3273 1.129998 CTCACCTCTGCAAGCATTTCG 59.870 52.381 0.00 0.00 0.00 3.46
3441 3475 0.755079 CTATGCCTGTGCTAGCTGGA 59.245 55.000 17.23 3.60 38.71 3.86
3465 3502 3.465742 AATCTAGAGACGCATGCATGT 57.534 42.857 26.79 9.13 0.00 3.21
3566 3603 1.152567 CAGTTTGGCCAGGGTCCAA 60.153 57.895 5.11 9.28 41.47 3.53
3629 3687 8.471609 TCTGAACATTCGTTTAGATACATGGTA 58.528 33.333 0.00 0.00 41.40 3.25
3638 3696 7.780008 TTCAGTTTCTGAACATTCGTTTAGA 57.220 32.000 7.92 0.00 44.27 2.10
3651 3709 6.720748 TGATTCATTTCCCATTCAGTTTCTGA 59.279 34.615 0.00 0.00 38.87 3.27
3652 3710 6.927416 TGATTCATTTCCCATTCAGTTTCTG 58.073 36.000 0.00 0.00 0.00 3.02
3653 3711 7.179694 ACATGATTCATTTCCCATTCAGTTTCT 59.820 33.333 0.00 0.00 0.00 2.52
3654 3712 7.325694 ACATGATTCATTTCCCATTCAGTTTC 58.674 34.615 0.00 0.00 0.00 2.78
3655 3713 7.248743 ACATGATTCATTTCCCATTCAGTTT 57.751 32.000 0.00 0.00 0.00 2.66
3656 3714 6.862469 ACATGATTCATTTCCCATTCAGTT 57.138 33.333 0.00 0.00 0.00 3.16
3657 3715 7.014905 CCATACATGATTCATTTCCCATTCAGT 59.985 37.037 0.00 0.00 0.00 3.41
3658 3716 7.375834 CCATACATGATTCATTTCCCATTCAG 58.624 38.462 0.00 0.00 0.00 3.02
3659 3717 6.268158 CCCATACATGATTCATTTCCCATTCA 59.732 38.462 0.00 0.00 0.00 2.57
3660 3718 6.694447 CCCATACATGATTCATTTCCCATTC 58.306 40.000 0.00 0.00 0.00 2.67
3661 3719 5.012354 GCCCATACATGATTCATTTCCCATT 59.988 40.000 0.00 0.00 0.00 3.16
3662 3720 4.529377 GCCCATACATGATTCATTTCCCAT 59.471 41.667 0.00 0.00 0.00 4.00
3663 3721 3.896888 GCCCATACATGATTCATTTCCCA 59.103 43.478 0.00 0.00 0.00 4.37
3664 3722 3.896888 TGCCCATACATGATTCATTTCCC 59.103 43.478 0.00 0.00 0.00 3.97
3665 3723 5.733620 ATGCCCATACATGATTCATTTCC 57.266 39.130 0.00 0.00 0.00 3.13
3666 3724 7.929785 AGAAAATGCCCATACATGATTCATTTC 59.070 33.333 0.00 0.00 33.81 2.17
3667 3725 7.798071 AGAAAATGCCCATACATGATTCATTT 58.202 30.769 0.00 3.89 35.01 2.32
3668 3726 7.369551 AGAAAATGCCCATACATGATTCATT 57.630 32.000 0.00 0.00 32.87 2.57
3669 3727 6.989155 AGAAAATGCCCATACATGATTCAT 57.011 33.333 0.00 0.00 32.87 2.57
3670 3728 6.795144 AAGAAAATGCCCATACATGATTCA 57.205 33.333 0.00 0.00 32.87 2.57
3671 3729 8.169977 TCTAAGAAAATGCCCATACATGATTC 57.830 34.615 0.00 0.00 31.61 2.52
3672 3730 8.537728 TTCTAAGAAAATGCCCATACATGATT 57.462 30.769 0.00 0.00 0.00 2.57
3673 3731 8.537728 TTTCTAAGAAAATGCCCATACATGAT 57.462 30.769 0.00 0.00 0.00 2.45
3674 3732 7.953005 TTTCTAAGAAAATGCCCATACATGA 57.047 32.000 0.00 0.00 0.00 3.07
3675 3733 9.603921 ATTTTTCTAAGAAAATGCCCATACATG 57.396 29.630 5.08 0.00 37.71 3.21
3676 3734 9.603921 CATTTTTCTAAGAAAATGCCCATACAT 57.396 29.630 11.25 0.00 44.92 2.29
3709 3767 2.789917 CTGTGCGCCAGAGAATGC 59.210 61.111 17.75 0.00 44.49 3.56
3730 3788 7.283807 TCCTAACACTCATATACGACTAAAGCA 59.716 37.037 0.00 0.00 0.00 3.91
3747 3808 0.966920 CTGTGGTCCGTCCTAACACT 59.033 55.000 0.00 0.00 37.07 3.55
3803 3864 0.729116 CCAACGGATCACATCACAGC 59.271 55.000 0.00 0.00 0.00 4.40
3905 3966 1.230324 AAGGAGAGCTTTCGTTGCAC 58.770 50.000 11.02 0.00 0.00 4.57
3906 3967 1.967319 AAAGGAGAGCTTTCGTTGCA 58.033 45.000 12.36 0.00 0.00 4.08
3910 3979 9.614792 ATTAACATATAAAAGGAGAGCTTTCGT 57.385 29.630 0.00 0.00 0.00 3.85
3951 4028 2.464865 CGTGGCATTTTGGTCGAAAAA 58.535 42.857 0.00 0.00 37.10 1.94
3952 4029 1.866063 GCGTGGCATTTTGGTCGAAAA 60.866 47.619 0.00 0.00 37.93 2.29
3973 4050 4.576879 AGGTAGTAGGTAAGTTGCTTTGC 58.423 43.478 0.00 0.00 0.00 3.68
3991 4068 3.777478 CGAGGAACATTTTAGCGAGGTA 58.223 45.455 0.00 0.00 0.00 3.08
3992 4069 2.618053 CGAGGAACATTTTAGCGAGGT 58.382 47.619 0.00 0.00 0.00 3.85
3993 4070 1.327764 GCGAGGAACATTTTAGCGAGG 59.672 52.381 0.00 0.00 0.00 4.63
4000 4077 3.254657 TGAAATTCGGCGAGGAACATTTT 59.745 39.130 10.46 3.15 0.00 1.82
4079 4156 8.673456 TTCTATTATTAAAAACCAAAGGGGCT 57.327 30.769 0.00 0.00 42.05 5.19
4099 4176 5.579047 TGGATCCAACAACCACAATTCTAT 58.421 37.500 13.46 0.00 0.00 1.98
4100 4177 4.991776 TGGATCCAACAACCACAATTCTA 58.008 39.130 13.46 0.00 0.00 2.10
4101 4178 3.843422 TGGATCCAACAACCACAATTCT 58.157 40.909 13.46 0.00 0.00 2.40
4102 4179 4.039124 ACTTGGATCCAACAACCACAATTC 59.961 41.667 23.63 0.00 33.20 2.17
4103 4180 3.966665 ACTTGGATCCAACAACCACAATT 59.033 39.130 23.63 0.00 33.20 2.32
4131 4208 1.476891 ACTACTACCATGTCGCAGTGG 59.523 52.381 0.00 0.00 41.35 4.00
4216 4293 6.372937 TCACAATTTACTCCATCGCACATTAA 59.627 34.615 0.00 0.00 0.00 1.40
4218 4295 4.699735 TCACAATTTACTCCATCGCACATT 59.300 37.500 0.00 0.00 0.00 2.71
4220 4297 3.669536 TCACAATTTACTCCATCGCACA 58.330 40.909 0.00 0.00 0.00 4.57
4221 4298 3.485877 GCTCACAATTTACTCCATCGCAC 60.486 47.826 0.00 0.00 0.00 5.34
4226 4303 4.263462 TGTCCTGCTCACAATTTACTCCAT 60.263 41.667 0.00 0.00 0.00 3.41
4227 4304 3.072330 TGTCCTGCTCACAATTTACTCCA 59.928 43.478 0.00 0.00 0.00 3.86
4228 4305 3.674997 TGTCCTGCTCACAATTTACTCC 58.325 45.455 0.00 0.00 0.00 3.85
4229 4306 4.569943 TCTGTCCTGCTCACAATTTACTC 58.430 43.478 0.00 0.00 0.00 2.59
4230 4307 4.623932 TCTGTCCTGCTCACAATTTACT 57.376 40.909 0.00 0.00 0.00 2.24
4261 4338 7.612677 AGTGGAGTACTACCTTGTTTTGATAG 58.387 38.462 1.66 0.00 38.04 2.08
4262 4339 7.549147 AGTGGAGTACTACCTTGTTTTGATA 57.451 36.000 1.66 0.00 38.04 2.15
4264 4341 5.881923 AGTGGAGTACTACCTTGTTTTGA 57.118 39.130 1.66 0.00 38.04 2.69
4265 4342 8.529476 ACTATAGTGGAGTACTACCTTGTTTTG 58.471 37.037 4.10 0.00 44.30 2.44
4267 4344 7.892241 TCACTATAGTGGAGTACTACCTTGTTT 59.108 37.037 28.33 0.00 44.30 2.83
4269 4346 6.966751 TCACTATAGTGGAGTACTACCTTGT 58.033 40.000 28.33 0.00 44.30 3.16
4270 4347 8.353684 CAATCACTATAGTGGAGTACTACCTTG 58.646 40.741 28.33 13.86 44.30 3.61
4272 4349 7.584532 ACAATCACTATAGTGGAGTACTACCT 58.415 38.462 28.33 1.99 44.30 3.08
4273 4350 7.820578 ACAATCACTATAGTGGAGTACTACC 57.179 40.000 28.33 3.60 44.30 3.18
4282 4360 9.787532 CCAACAAATTTACAATCACTATAGTGG 57.212 33.333 28.33 17.04 45.65 4.00
4288 4366 8.986847 CAAATGCCAACAAATTTACAATCACTA 58.013 29.630 0.00 0.00 0.00 2.74
4290 4368 7.859598 TCAAATGCCAACAAATTTACAATCAC 58.140 30.769 0.00 0.00 0.00 3.06
4294 4372 6.054295 AGCTCAAATGCCAACAAATTTACAA 58.946 32.000 0.00 0.00 0.00 2.41
4304 4382 5.175859 TGTACTAGTAGCTCAAATGCCAAC 58.824 41.667 1.87 0.00 0.00 3.77
4305 4383 5.414789 TGTACTAGTAGCTCAAATGCCAA 57.585 39.130 1.87 0.00 0.00 4.52
4307 4385 6.091441 GCATATGTACTAGTAGCTCAAATGCC 59.909 42.308 1.87 0.00 31.09 4.40
4308 4386 6.091441 GGCATATGTACTAGTAGCTCAAATGC 59.909 42.308 1.87 11.97 35.33 3.56
4309 4387 6.591834 GGGCATATGTACTAGTAGCTCAAATG 59.408 42.308 1.87 3.58 0.00 2.32
4310 4388 6.295916 GGGGCATATGTACTAGTAGCTCAAAT 60.296 42.308 11.73 0.00 0.00 2.32
4311 4389 5.011738 GGGGCATATGTACTAGTAGCTCAAA 59.988 44.000 11.73 0.00 0.00 2.69
4312 4390 4.527038 GGGGCATATGTACTAGTAGCTCAA 59.473 45.833 11.73 0.00 0.00 3.02
4315 4393 3.442076 GGGGGCATATGTACTAGTAGCT 58.558 50.000 1.87 0.00 0.00 3.32
4333 4411 1.301401 CGCACATGTATACCGGGGG 60.301 63.158 6.32 0.00 0.00 5.40
4334 4412 0.675083 TACGCACATGTATACCGGGG 59.325 55.000 6.32 0.00 0.00 5.73
4335 4413 2.333926 CATACGCACATGTATACCGGG 58.666 52.381 6.32 0.00 33.37 5.73
4336 4414 1.724623 GCATACGCACATGTATACCGG 59.275 52.381 0.00 0.00 38.36 5.28
4337 4415 2.399448 TGCATACGCACATGTATACCG 58.601 47.619 0.00 1.87 45.36 4.02
4349 4427 1.887707 GGTAGCCTGGTGCATACGC 60.888 63.158 0.00 0.00 44.83 4.42
4350 4428 0.107897 TTGGTAGCCTGGTGCATACG 60.108 55.000 0.00 0.00 44.83 3.06
4351 4429 1.949525 CATTGGTAGCCTGGTGCATAC 59.050 52.381 0.00 0.00 44.83 2.39
4352 4430 1.133823 CCATTGGTAGCCTGGTGCATA 60.134 52.381 0.00 0.00 44.83 3.14
4353 4431 0.396139 CCATTGGTAGCCTGGTGCAT 60.396 55.000 0.00 0.00 44.83 3.96
4354 4432 1.001020 CCATTGGTAGCCTGGTGCA 60.001 57.895 0.00 0.00 44.83 4.57
4355 4433 0.254747 TACCATTGGTAGCCTGGTGC 59.745 55.000 20.62 0.00 43.05 5.01
4356 4434 1.559682 AGTACCATTGGTAGCCTGGTG 59.440 52.381 15.94 2.33 43.05 4.17
4357 4435 1.838077 GAGTACCATTGGTAGCCTGGT 59.162 52.381 15.94 17.31 45.11 4.00
4358 4436 1.141053 GGAGTACCATTGGTAGCCTGG 59.859 57.143 15.94 8.62 39.02 4.45
4359 4437 1.837439 TGGAGTACCATTGGTAGCCTG 59.163 52.381 24.49 0.00 39.02 4.85
4360 4438 2.263895 TGGAGTACCATTGGTAGCCT 57.736 50.000 24.49 16.69 39.02 4.58
4371 4449 3.212685 ACTCGTGCTATAGTGGAGTACC 58.787 50.000 16.02 0.00 36.28 3.34
4388 4466 5.597806 TGCAGGTAATTAATCCACTACTCG 58.402 41.667 0.00 0.00 0.00 4.18
4389 4467 6.817184 TCTGCAGGTAATTAATCCACTACTC 58.183 40.000 15.13 0.00 0.00 2.59
4397 4475 4.455877 CGGGGAATCTGCAGGTAATTAATC 59.544 45.833 15.13 0.00 0.00 1.75
4399 4477 3.815809 CGGGGAATCTGCAGGTAATTAA 58.184 45.455 15.13 0.00 0.00 1.40
4402 4480 0.179018 GCGGGGAATCTGCAGGTAAT 60.179 55.000 15.13 0.00 46.73 1.89
4403 4481 1.223487 GCGGGGAATCTGCAGGTAA 59.777 57.895 15.13 0.00 46.73 2.85
4410 4488 0.322456 TTGGAACTGCGGGGAATCTG 60.322 55.000 0.00 0.00 0.00 2.90
4411 4489 0.625849 ATTGGAACTGCGGGGAATCT 59.374 50.000 0.00 0.00 0.00 2.40
4412 4490 2.341846 TATTGGAACTGCGGGGAATC 57.658 50.000 0.00 0.00 0.00 2.52
4413 4491 3.222603 GAATATTGGAACTGCGGGGAAT 58.777 45.455 0.00 0.00 0.00 3.01
4414 4492 2.650322 GAATATTGGAACTGCGGGGAA 58.350 47.619 0.00 0.00 0.00 3.97
4416 4494 0.944386 CGAATATTGGAACTGCGGGG 59.056 55.000 0.00 0.00 0.00 5.73
4417 4495 1.330521 CACGAATATTGGAACTGCGGG 59.669 52.381 4.29 0.00 0.00 6.13
4418 4496 1.268032 GCACGAATATTGGAACTGCGG 60.268 52.381 4.29 0.00 0.00 5.69
4419 4497 1.665679 AGCACGAATATTGGAACTGCG 59.334 47.619 4.29 0.00 0.00 5.18
4420 4498 3.764885 AAGCACGAATATTGGAACTGC 57.235 42.857 4.29 4.19 0.00 4.40
4421 4499 7.128331 CAGAATAAGCACGAATATTGGAACTG 58.872 38.462 4.29 0.00 0.00 3.16
4422 4500 6.823689 ACAGAATAAGCACGAATATTGGAACT 59.176 34.615 4.29 0.00 0.00 3.01
4423 4501 7.016361 ACAGAATAAGCACGAATATTGGAAC 57.984 36.000 4.29 0.00 0.00 3.62
4424 4502 6.821160 TGACAGAATAAGCACGAATATTGGAA 59.179 34.615 4.29 0.00 0.00 3.53
4425 4503 6.345298 TGACAGAATAAGCACGAATATTGGA 58.655 36.000 4.29 0.00 0.00 3.53
4426 4504 6.603237 TGACAGAATAAGCACGAATATTGG 57.397 37.500 0.00 0.00 0.00 3.16
4429 4507 7.550551 CCCATATGACAGAATAAGCACGAATAT 59.449 37.037 3.65 0.00 0.00 1.28
4430 4508 6.873605 CCCATATGACAGAATAAGCACGAATA 59.126 38.462 3.65 0.00 0.00 1.75
4431 4509 5.702670 CCCATATGACAGAATAAGCACGAAT 59.297 40.000 3.65 0.00 0.00 3.34
4432 4510 5.056480 CCCATATGACAGAATAAGCACGAA 58.944 41.667 3.65 0.00 0.00 3.85
4433 4511 4.100963 ACCCATATGACAGAATAAGCACGA 59.899 41.667 3.65 0.00 0.00 4.35
4434 4512 4.380531 ACCCATATGACAGAATAAGCACG 58.619 43.478 3.65 0.00 0.00 5.34
4435 4513 6.525629 AGTACCCATATGACAGAATAAGCAC 58.474 40.000 3.65 0.00 0.00 4.40
4436 4514 6.747414 AGTACCCATATGACAGAATAAGCA 57.253 37.500 3.65 0.00 0.00 3.91
4437 4515 6.992715 ACAAGTACCCATATGACAGAATAAGC 59.007 38.462 3.65 0.00 0.00 3.09
4447 4525 3.054434 AGCAAGCACAAGTACCCATATGA 60.054 43.478 3.65 0.00 0.00 2.15
4480 4558 9.709495 TTGTGGTTGTTATAGTACGTATTTCTT 57.291 29.630 0.00 0.00 0.00 2.52
4484 4562 9.573133 GTAGTTGTGGTTGTTATAGTACGTATT 57.427 33.333 0.00 0.00 0.00 1.89
4486 4564 8.236586 CAGTAGTTGTGGTTGTTATAGTACGTA 58.763 37.037 0.00 0.00 0.00 3.57
4488 4566 6.529125 CCAGTAGTTGTGGTTGTTATAGTACG 59.471 42.308 0.00 0.00 0.00 3.67
4489 4567 7.381323 ACCAGTAGTTGTGGTTGTTATAGTAC 58.619 38.462 0.00 0.00 46.73 2.73
4490 4568 7.543359 ACCAGTAGTTGTGGTTGTTATAGTA 57.457 36.000 0.00 0.00 46.73 1.82
4492 4570 8.836268 TTTACCAGTAGTTGTGGTTGTTATAG 57.164 34.615 0.00 0.00 46.73 1.31
4636 4719 4.351111 CCTCTGGGCCTACATAATTTACCT 59.649 45.833 4.53 0.00 0.00 3.08
4694 4778 2.420722 ACGTGCAAAAGGTCGAGAAAAA 59.579 40.909 0.00 0.00 0.00 1.94
4702 4786 1.515521 CCTCCCACGTGCAAAAGGTC 61.516 60.000 10.91 0.00 0.00 3.85
4799 4884 3.709653 ACAGAGGGAGTAACAAAGTGTGA 59.290 43.478 0.00 0.00 0.00 3.58
4811 4896 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
4812 4897 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
4813 4898 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
4814 4899 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
4815 4900 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
4823 4908 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
4830 4915 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
4831 4916 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
4832 4917 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
4833 4918 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
4834 4919 9.733219 ATAACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.39 5.03
4835 4920 9.733219 GATAACTAAAGTAGTGATCTAAACGCT 57.267 33.333 5.75 0.00 41.55 5.07
4843 4928 9.733219 AGCGTTTAGATAACTAAAGTAGTGATC 57.267 33.333 5.51 5.03 45.42 2.92
4844 4929 9.733219 GAGCGTTTAGATAACTAAAGTAGTGAT 57.267 33.333 5.51 0.00 45.42 3.06
4845 4930 8.954350 AGAGCGTTTAGATAACTAAAGTAGTGA 58.046 33.333 5.51 0.00 45.42 3.41
4846 4931 9.570488 AAGAGCGTTTAGATAACTAAAGTAGTG 57.430 33.333 5.51 0.00 45.42 2.74
4860 4945 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
4861 4946 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
4862 4947 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
4863 4948 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
4864 4949 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
4865 4950 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
4866 4951 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4867 4952 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
4868 4953 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4869 4954 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4870 4955 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
4871 4956 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
4872 4957 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
4873 4958 7.672122 AAGTACTCCCTCCGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
4874 4959 7.486407 AAAGTACTCCCTCCGTAAAGAAATA 57.514 36.000 0.00 0.00 0.00 1.40
4875 4960 6.370186 AAAGTACTCCCTCCGTAAAGAAAT 57.630 37.500 0.00 0.00 0.00 2.17
4876 4961 5.813513 AAAGTACTCCCTCCGTAAAGAAA 57.186 39.130 0.00 0.00 0.00 2.52
4877 4962 5.541484 AGAAAAGTACTCCCTCCGTAAAGAA 59.459 40.000 0.00 0.00 0.00 2.52
4878 4963 5.082425 AGAAAAGTACTCCCTCCGTAAAGA 58.918 41.667 0.00 0.00 0.00 2.52
4879 4964 5.402997 AGAAAAGTACTCCCTCCGTAAAG 57.597 43.478 0.00 0.00 0.00 1.85
4880 4965 5.541484 AGAAGAAAAGTACTCCCTCCGTAAA 59.459 40.000 0.00 0.00 0.00 2.01
4881 4966 5.082425 AGAAGAAAAGTACTCCCTCCGTAA 58.918 41.667 0.00 0.00 0.00 3.18
4882 4967 4.670765 AGAAGAAAAGTACTCCCTCCGTA 58.329 43.478 0.00 0.00 0.00 4.02
4883 4968 3.508426 AGAAGAAAAGTACTCCCTCCGT 58.492 45.455 0.00 0.00 0.00 4.69
4884 4969 4.538746 AAGAAGAAAAGTACTCCCTCCG 57.461 45.455 0.00 0.00 0.00 4.63
4885 4970 5.013287 AGGAAAGAAGAAAAGTACTCCCTCC 59.987 44.000 0.00 0.00 0.00 4.30
4886 4971 5.935206 CAGGAAAGAAGAAAAGTACTCCCTC 59.065 44.000 0.00 0.00 0.00 4.30
4887 4972 5.221945 CCAGGAAAGAAGAAAAGTACTCCCT 60.222 44.000 0.00 0.00 0.00 4.20
4888 4973 5.004448 CCAGGAAAGAAGAAAAGTACTCCC 58.996 45.833 0.00 0.00 0.00 4.30
4889 4974 5.866207 TCCAGGAAAGAAGAAAAGTACTCC 58.134 41.667 0.00 0.00 0.00 3.85
4890 4975 9.674068 ATTATCCAGGAAAGAAGAAAAGTACTC 57.326 33.333 0.00 0.00 0.00 2.59
4956 5041 2.112279 TGGAAGGTAGACCACAGGTT 57.888 50.000 0.66 0.00 35.25 3.50
5023 5108 7.092354 TGGCCCATCTTTTACCAAATAGTAGTA 60.092 37.037 0.00 0.00 0.00 1.82
5024 5109 6.127101 GGCCCATCTTTTACCAAATAGTAGT 58.873 40.000 0.00 0.00 0.00 2.73
5025 5110 6.126409 TGGCCCATCTTTTACCAAATAGTAG 58.874 40.000 0.00 0.00 0.00 2.57
5026 5111 6.080969 TGGCCCATCTTTTACCAAATAGTA 57.919 37.500 0.00 0.00 0.00 1.82
5027 5112 4.941713 TGGCCCATCTTTTACCAAATAGT 58.058 39.130 0.00 0.00 0.00 2.12
5028 5113 4.956075 ACTGGCCCATCTTTTACCAAATAG 59.044 41.667 0.00 0.00 0.00 1.73
5039 5124 1.000396 GCCTCAACTGGCCCATCTT 60.000 57.895 0.00 0.00 46.82 2.40
5068 5153 8.684520 TCTTATCTTTGTTTTTCACCGGTTTTA 58.315 29.630 2.97 0.00 0.00 1.52
5104 5194 2.643304 GTTTCCCCTTACTCTCCCTGTT 59.357 50.000 0.00 0.00 0.00 3.16
5107 5197 2.735259 TGTTTCCCCTTACTCTCCCT 57.265 50.000 0.00 0.00 0.00 4.20
5116 5206 6.071320 GCATCTCCTATTTATGTTTCCCCTT 58.929 40.000 0.00 0.00 0.00 3.95
5162 5252 4.307432 TGTTCTCATCCTTCGTCAAACTC 58.693 43.478 0.00 0.00 0.00 3.01
5177 5267 9.621629 TTAAAAAGATGTAAGGTTCTGTTCTCA 57.378 29.630 0.00 0.00 0.00 3.27
5283 5376 2.159043 CGACACTACTGATGAGCCCAAT 60.159 50.000 0.00 0.00 0.00 3.16
5288 5381 2.162608 AGACACGACACTACTGATGAGC 59.837 50.000 0.00 0.00 0.00 4.26
5303 5396 1.271876 CGACACCATGATGAGACACG 58.728 55.000 0.00 0.00 0.00 4.49
5339 5433 3.143807 TGTGGCAAAGTTTTTCAGTCG 57.856 42.857 0.00 0.00 0.00 4.18
5416 5513 4.485163 ACCACTAGAAATTCAAATTGCGC 58.515 39.130 0.00 0.00 0.00 6.09
5457 5554 1.880027 CCTCTGTGCACCAACTAAACC 59.120 52.381 15.69 0.00 0.00 3.27
5470 5567 0.834612 TTATTACCCCGCCCTCTGTG 59.165 55.000 0.00 0.00 0.00 3.66
5471 5568 1.587066 TTTATTACCCCGCCCTCTGT 58.413 50.000 0.00 0.00 0.00 3.41
5496 5593 9.423061 GATAAGGCAAAGCTTTTTCAAAAGATA 57.577 29.630 9.53 0.00 46.39 1.98
5525 5623 8.784043 AGTGAGTTTATGTTCAATGGAGTTTAC 58.216 33.333 0.00 0.00 0.00 2.01
5532 5637 7.530010 CCACTTAGTGAGTTTATGTTCAATGG 58.470 38.462 14.66 0.00 36.10 3.16
5554 5659 5.731591 AGTAATAGTTCAGTTAGTGGCCAC 58.268 41.667 29.22 29.22 0.00 5.01
5571 5676 5.670792 AGACCCGTGTCATTTGAGTAATA 57.329 39.130 0.00 0.00 44.33 0.98
5698 5811 7.894364 AGGAGGAAACTTTCAGTACTGATAGTA 59.106 37.037 34.67 17.51 46.24 1.82
5784 5897 5.015391 GGTGGGGATTAGATCTAGAGAGGTA 59.985 48.000 2.02 0.00 0.00 3.08
5823 5936 2.024751 GGTGAATAAACAGGGGCCCTAA 60.025 50.000 28.28 11.84 29.64 2.69
5838 5951 3.576078 TGTTGGTCAGAGTTGGTGAAT 57.424 42.857 0.00 0.00 0.00 2.57
5970 6085 0.538057 CACTTCCAGCTTCCAGGCAA 60.538 55.000 0.00 0.00 34.17 4.52
5981 6096 1.676746 CATGATGGCTCCACTTCCAG 58.323 55.000 0.00 0.00 35.57 3.86
5982 6097 0.256752 CCATGATGGCTCCACTTCCA 59.743 55.000 0.00 0.00 36.70 3.53
5983 6098 0.548031 TCCATGATGGCTCCACTTCC 59.452 55.000 6.59 0.00 37.47 3.46
5984 6099 1.964552 CTCCATGATGGCTCCACTTC 58.035 55.000 6.59 0.00 37.47 3.01
5985 6100 0.106819 GCTCCATGATGGCTCCACTT 60.107 55.000 6.59 0.00 37.47 3.16
5986 6101 1.530771 GCTCCATGATGGCTCCACT 59.469 57.895 6.59 0.00 37.47 4.00
5987 6102 1.890979 CGCTCCATGATGGCTCCAC 60.891 63.158 6.59 0.00 37.47 4.02
6218 6457 8.760735 ACTACTAGATCTAGCCAGTATATCGAA 58.239 37.037 26.50 0.00 36.66 3.71
6252 6491 6.627953 GCTTAATGCAATGGTTGGTAGTCAAT 60.628 38.462 0.00 0.00 42.31 2.57
6289 6528 7.920160 ACTTTTTCTCATTTGGAAAGCAAAA 57.080 28.000 0.00 0.00 34.73 2.44
6389 6628 4.331137 CGCACACAAGTATAATTGGTTCG 58.669 43.478 16.58 12.87 34.36 3.95
6392 6631 3.681593 ACCGCACACAAGTATAATTGGT 58.318 40.909 16.58 9.02 34.36 3.67
6397 6636 7.959689 TTTAAACTACCGCACACAAGTATAA 57.040 32.000 0.00 0.00 0.00 0.98
6449 6699 7.276088 AGATTCATATATAGTTGGCCACCAT 57.724 36.000 3.88 0.80 31.53 3.55
6527 6777 9.434275 TTTCCCTCTTCCTTTATTTCTTTTCTT 57.566 29.630 0.00 0.00 0.00 2.52
6543 6793 7.401955 AATTTCATCTGATGTTTCCCTCTTC 57.598 36.000 16.66 0.00 0.00 2.87
6597 6847 4.708601 AGTAAATTTACGCAGCAACGAAG 58.291 39.130 19.92 0.00 38.65 3.79
6623 6873 5.105432 TGCATGGACAGCAAAGCAATTTATA 60.105 36.000 0.00 0.00 39.39 0.98
6624 6874 4.186159 GCATGGACAGCAAAGCAATTTAT 58.814 39.130 0.00 0.00 0.00 1.40
6654 6905 3.876309 AACCTCTCCAGCCAAAACTTA 57.124 42.857 0.00 0.00 0.00 2.24
6675 6926 1.770658 CAAGACTCCCATGCATCCCTA 59.229 52.381 0.00 0.00 0.00 3.53
6714 6965 3.470567 GTGAAGACGGCTGCGACG 61.471 66.667 0.00 2.24 41.40 5.12
6827 7093 6.970043 TCGAAGATTTCTCGCAAAAAGAAAAA 59.030 30.769 2.75 0.00 43.76 1.94
6828 7094 6.413818 GTCGAAGATTTCTCGCAAAAAGAAAA 59.586 34.615 2.75 0.00 43.76 2.29
6829 7095 5.907391 GTCGAAGATTTCTCGCAAAAAGAAA 59.093 36.000 1.22 1.22 44.43 2.52
6830 7096 5.007234 TGTCGAAGATTTCTCGCAAAAAGAA 59.993 36.000 0.00 0.00 40.67 2.52
6831 7097 4.509970 TGTCGAAGATTTCTCGCAAAAAGA 59.490 37.500 0.00 0.00 40.67 2.52
6832 7098 4.772434 TGTCGAAGATTTCTCGCAAAAAG 58.228 39.130 0.00 0.00 40.67 2.27
6833 7099 4.804608 TGTCGAAGATTTCTCGCAAAAA 57.195 36.364 0.00 0.00 40.67 1.94
6834 7100 4.509970 TCTTGTCGAAGATTTCTCGCAAAA 59.490 37.500 0.00 0.00 40.67 2.44
6835 7101 4.055360 TCTTGTCGAAGATTTCTCGCAAA 58.945 39.130 0.00 0.00 40.67 3.68
6836 7102 3.649073 TCTTGTCGAAGATTTCTCGCAA 58.351 40.909 0.00 0.00 40.67 4.85
6837 7103 3.297830 TCTTGTCGAAGATTTCTCGCA 57.702 42.857 0.00 0.00 40.67 5.10
6838 7104 3.480505 CGTTCTTGTCGAAGATTTCTCGC 60.481 47.826 0.00 0.00 40.67 5.03
6839 7105 3.669122 ACGTTCTTGTCGAAGATTTCTCG 59.331 43.478 0.00 0.00 40.67 4.04
6840 7106 5.577860 AACGTTCTTGTCGAAGATTTCTC 57.422 39.130 0.00 0.00 40.67 2.87
6841 7107 6.073927 GGTTAACGTTCTTGTCGAAGATTTCT 60.074 38.462 2.82 0.00 40.67 2.52
6842 7108 6.069563 GGTTAACGTTCTTGTCGAAGATTTC 58.930 40.000 2.82 0.00 40.67 2.17
6843 7109 5.332808 CGGTTAACGTTCTTGTCGAAGATTT 60.333 40.000 2.82 0.00 38.05 2.17
6844 7110 4.149396 CGGTTAACGTTCTTGTCGAAGATT 59.851 41.667 2.82 0.00 38.05 2.40
6845 7111 3.671928 CGGTTAACGTTCTTGTCGAAGAT 59.328 43.478 2.82 0.00 38.05 2.40
6846 7112 3.044986 CGGTTAACGTTCTTGTCGAAGA 58.955 45.455 2.82 0.00 36.36 2.87
6847 7113 3.413687 CGGTTAACGTTCTTGTCGAAG 57.586 47.619 2.82 0.00 37.93 3.79
6867 7133 3.178267 CACAACCATGTCAAACACACAC 58.822 45.455 0.00 0.00 38.04 3.82
6871 7137 2.159254 ACTGCACAACCATGTCAAACAC 60.159 45.455 0.00 0.00 37.82 3.32
6883 7149 1.601162 CCAGCATGAACACTGCACAAC 60.601 52.381 0.00 0.00 42.15 3.32
6933 7199 1.747709 CTCCAGCCAAACTCCATCAG 58.252 55.000 0.00 0.00 0.00 2.90
7100 7366 1.984570 CCTCTCCCTGGCGAACTCA 60.985 63.158 0.00 0.00 0.00 3.41
7164 7430 2.551912 CCACACAACAAGGTCCGGC 61.552 63.158 0.00 0.00 0.00 6.13
7193 7459 4.201822 GCCACTAACGGATTCTTCAACATC 60.202 45.833 0.00 0.00 0.00 3.06
7206 7472 2.723124 ATTGCTTTTGCCACTAACGG 57.277 45.000 0.00 0.00 46.87 4.44
7209 7475 8.128582 CGATCTTATTATTGCTTTTGCCACTAA 58.871 33.333 0.00 0.00 46.87 2.24
7286 7552 6.265876 TGTTTGGTGGTTCCCTAAAAATCTAC 59.734 38.462 0.00 0.00 34.77 2.59
7290 7557 6.328934 AGAATGTTTGGTGGTTCCCTAAAAAT 59.671 34.615 0.00 0.00 34.77 1.82
7319 7586 1.198867 AGCGCACGCATGAAACAAATA 59.801 42.857 18.24 0.00 44.88 1.40
7362 7629 6.920569 TCAAAACGAGAAATAATCTAGGCC 57.079 37.500 0.00 0.00 38.96 5.19
7420 7688 5.815222 GTGAAAAGGCATTTTTAACCACACT 59.185 36.000 10.81 0.00 39.06 3.55
7553 7821 5.220491 GGAATGCATCAGAAGTCTAACGTTC 60.220 44.000 2.82 0.00 0.00 3.95
7658 8274 2.413371 GCTCAAGCGAAACATTCCACTC 60.413 50.000 0.00 0.00 0.00 3.51
7734 8350 2.233431 GGGGCTTTGCATGTGACATTAA 59.767 45.455 0.00 0.00 0.00 1.40
7743 8359 4.440127 GGTGCGGGGCTTTGCATG 62.440 66.667 0.00 0.00 43.96 4.06
7810 8427 6.149973 CCATAGAATTTCAGCTCACACTTTCA 59.850 38.462 0.00 0.00 0.00 2.69
7833 8450 1.342174 AGAAAAGAACCGCGAGTACCA 59.658 47.619 8.23 0.00 0.00 3.25
7843 8460 6.039605 AGCTATAGACCGAGTAGAAAAGAACC 59.960 42.308 3.21 0.00 0.00 3.62
7851 8468 4.434545 ACCAAGCTATAGACCGAGTAGA 57.565 45.455 3.21 0.00 0.00 2.59
7877 8494 9.190317 GGAGGAGAATAAACCATAGTTTGATTT 57.810 33.333 0.00 0.00 45.77 2.17
7883 8500 4.444449 GGCGGAGGAGAATAAACCATAGTT 60.444 45.833 0.00 0.00 38.03 2.24
7884 8501 3.071167 GGCGGAGGAGAATAAACCATAGT 59.929 47.826 0.00 0.00 0.00 2.12
7885 8502 3.665190 GGCGGAGGAGAATAAACCATAG 58.335 50.000 0.00 0.00 0.00 2.23
7886 8503 2.036733 CGGCGGAGGAGAATAAACCATA 59.963 50.000 0.00 0.00 0.00 2.74
7887 8504 1.202651 CGGCGGAGGAGAATAAACCAT 60.203 52.381 0.00 0.00 0.00 3.55
7888 8505 0.177141 CGGCGGAGGAGAATAAACCA 59.823 55.000 0.00 0.00 0.00 3.67
7889 8506 1.158484 GCGGCGGAGGAGAATAAACC 61.158 60.000 9.78 0.00 0.00 3.27
7890 8507 0.179081 AGCGGCGGAGGAGAATAAAC 60.179 55.000 9.78 0.00 0.00 2.01
7891 8508 0.539986 AAGCGGCGGAGGAGAATAAA 59.460 50.000 9.78 0.00 0.00 1.40
7903 8520 2.897350 GGAAGATGGGAAGCGGCG 60.897 66.667 0.51 0.51 0.00 6.46
7926 8543 6.732531 AACCATACCTTAAAAGCTAACGAC 57.267 37.500 0.00 0.00 0.00 4.34
8065 8804 5.710099 CCCTTTTTGGTTAGATACTGCTTCA 59.290 40.000 0.00 0.00 0.00 3.02
8066 8805 5.944007 TCCCTTTTTGGTTAGATACTGCTTC 59.056 40.000 0.00 0.00 0.00 3.86
8067 8806 5.710567 GTCCCTTTTTGGTTAGATACTGCTT 59.289 40.000 0.00 0.00 0.00 3.91
8071 8810 6.449830 AGTGTCCCTTTTTGGTTAGATACT 57.550 37.500 0.00 0.00 0.00 2.12
8119 8858 8.576442 CCCAAAATAAGTGACTCAACTTTGTAT 58.424 33.333 0.00 0.00 40.77 2.29
8132 8871 5.970640 ACTCCCTCTATCCCAAAATAAGTGA 59.029 40.000 0.00 0.00 0.00 3.41
8148 8887 2.044492 TGTCCTCCAATGTACTCCCTCT 59.956 50.000 0.00 0.00 0.00 3.69
8179 8918 0.523072 CAGCCTCACCGGTTTGATTG 59.477 55.000 2.97 0.00 34.25 2.67
8183 8922 2.317609 CGACAGCCTCACCGGTTTG 61.318 63.158 2.97 0.00 34.25 2.93
8184 8923 2.030562 CGACAGCCTCACCGGTTT 59.969 61.111 2.97 0.00 34.25 3.27
8187 8926 3.934391 GAACCGACAGCCTCACCGG 62.934 68.421 0.00 0.00 46.65 5.28
8191 8930 1.407656 AACCTGAACCGACAGCCTCA 61.408 55.000 0.00 0.00 36.67 3.86
8216 8955 2.048503 GAACCTGTGGTCCGACCG 60.049 66.667 13.02 1.01 42.58 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.