Multiple sequence alignment - TraesCS3B01G183400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G183400 chr3B 100.000 5741 0 0 1 5741 194647879 194642139 0.000000e+00 10602.0
1 TraesCS3B01G183400 chr3A 91.514 5126 229 65 720 5741 153598945 153593922 0.000000e+00 6866.0
2 TraesCS3B01G183400 chr3A 98.498 333 4 1 354 685 464322229 464321897 2.300000e-163 586.0
3 TraesCS3B01G183400 chr3A 98.788 330 3 1 357 685 544971673 544971344 2.300000e-163 586.0
4 TraesCS3B01G183400 chr3A 78.448 348 56 14 18 357 153599278 153598942 5.830000e-50 209.0
5 TraesCS3B01G183400 chr3D 93.023 4515 169 65 720 5143 136267972 136263513 0.000000e+00 6458.0
6 TraesCS3B01G183400 chr3D 92.042 289 16 5 18 303 136268398 136268114 3.220000e-107 399.0
7 TraesCS3B01G183400 chr3D 81.941 443 37 21 5204 5635 136261722 136261312 9.220000e-88 335.0
8 TraesCS3B01G183400 chr3D 95.588 68 3 0 290 357 136268036 136267969 6.080000e-20 110.0
9 TraesCS3B01G183400 chr2B 98.516 337 4 1 350 685 98389880 98389544 1.380000e-165 593.0
10 TraesCS3B01G183400 chr2B 98.788 330 3 1 357 685 575378105 575378434 2.300000e-163 586.0
11 TraesCS3B01G183400 chr1A 97.135 349 8 2 338 685 153581943 153582290 6.410000e-164 588.0
12 TraesCS3B01G183400 chrUn 98.214 336 5 1 351 685 168683398 168683733 2.300000e-163 586.0
13 TraesCS3B01G183400 chr7A 98.788 330 3 1 357 685 317176313 317175984 2.300000e-163 586.0
14 TraesCS3B01G183400 chr2A 98.788 330 3 1 357 685 740400937 740400608 2.300000e-163 586.0
15 TraesCS3B01G183400 chr2A 97.085 343 9 1 344 685 411091530 411091872 1.390000e-160 577.0
16 TraesCS3B01G183400 chr2A 92.500 40 3 0 685 724 514718089 514718128 2.230000e-04 58.4
17 TraesCS3B01G183400 chr1D 79.598 348 51 14 18 357 293195458 293195793 1.240000e-56 231.0
18 TraesCS3B01G183400 chr4B 100.000 29 0 0 693 721 363006768 363006740 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G183400 chr3B 194642139 194647879 5740 True 10602.0 10602 100.0000 1 5741 1 chr3B.!!$R1 5740
1 TraesCS3B01G183400 chr3A 153593922 153599278 5356 True 3537.5 6866 84.9810 18 5741 2 chr3A.!!$R3 5723
2 TraesCS3B01G183400 chr3D 136261312 136268398 7086 True 1825.5 6458 90.6485 18 5635 4 chr3D.!!$R1 5617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 540 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.0 0.0 0.00 0.00 3.51 F
440 542 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.0 0.0 0.00 0.00 2.59 F
1457 1603 0.111253 AGTCCACTGCCCTTTTCCTG 59.889 55.0 0.0 0.00 0.00 3.86 F
1561 1709 0.104855 TGGTATCAGAGGACATGCGC 59.895 55.0 0.0 0.00 0.00 6.09 F
2626 2793 0.394080 GGAAGAAGGATGCTGCTGCT 60.394 55.0 17.0 2.26 40.48 4.24 F
3643 3819 0.037160 ACCGTTACCTTTCCGGCAAT 59.963 50.0 0.0 0.00 45.49 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1446 0.101399 CGATCTCAACCCCAGACGAG 59.899 60.000 0.00 0.00 0.00 4.18 R
1562 1710 0.168788 ACATGAGGCAACAAATCGCG 59.831 50.000 0.00 0.00 41.41 5.87 R
2524 2680 0.753262 ATAAGAGCACACGCCCTAGG 59.247 55.000 0.06 0.06 39.83 3.02 R
2760 2927 1.471684 CATTTGAAGGAGCAGGCTGAC 59.528 52.381 20.86 11.09 0.00 3.51 R
4435 4634 0.961019 TGCTTCCAGTTCACAATGGC 59.039 50.000 0.00 0.00 36.47 4.40 R
4820 5038 0.741326 TACTGTCTGCGAGGATCAGC 59.259 55.000 0.00 0.00 35.70 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 74 1.656594 CACGCGACATTTTCCGATGTA 59.343 47.619 15.93 0.00 40.21 2.29
76 78 3.670203 GCGACATTTTCCGATGTACAAG 58.330 45.455 0.00 0.00 40.21 3.16
170 174 7.542477 TCTCTTGCTAAAGTTAATCTCACTTCG 59.458 37.037 0.00 0.00 33.12 3.79
193 201 4.036144 GCGTCCCTAAGTAACTACCACTAG 59.964 50.000 0.00 0.00 0.00 2.57
200 208 7.281999 CCCTAAGTAACTACCACTAGAGTGTAC 59.718 44.444 8.78 4.53 44.21 2.90
234 242 1.686355 ACATTTTCTCCGTTGGCACA 58.314 45.000 0.00 0.00 0.00 4.57
261 269 4.765339 CCGAACAAACTTAAAATCCTCCCT 59.235 41.667 0.00 0.00 0.00 4.20
262 270 5.106277 CCGAACAAACTTAAAATCCTCCCTC 60.106 44.000 0.00 0.00 0.00 4.30
263 271 5.472137 CGAACAAACTTAAAATCCTCCCTCA 59.528 40.000 0.00 0.00 0.00 3.86
264 272 6.016610 CGAACAAACTTAAAATCCTCCCTCAA 60.017 38.462 0.00 0.00 0.00 3.02
354 456 4.770795 AGCGATTAGTTAATTGACAGCCT 58.229 39.130 2.93 0.00 30.22 4.58
355 457 5.914033 AGCGATTAGTTAATTGACAGCCTA 58.086 37.500 2.93 0.00 30.22 3.93
356 458 6.346096 AGCGATTAGTTAATTGACAGCCTAA 58.654 36.000 2.93 0.00 30.22 2.69
357 459 6.480320 AGCGATTAGTTAATTGACAGCCTAAG 59.520 38.462 2.93 0.00 30.22 2.18
358 460 6.479001 GCGATTAGTTAATTGACAGCCTAAGA 59.521 38.462 2.93 0.00 30.22 2.10
359 461 7.306866 GCGATTAGTTAATTGACAGCCTAAGAG 60.307 40.741 2.93 0.00 30.22 2.85
360 462 7.169982 CGATTAGTTAATTGACAGCCTAAGAGG 59.830 40.741 2.93 0.00 32.28 3.69
361 463 5.104259 AGTTAATTGACAGCCTAAGAGGG 57.896 43.478 2.93 0.00 35.37 4.30
368 470 1.994463 AGCCTAAGAGGGTGCTTGG 59.006 57.895 0.00 0.00 45.86 3.61
369 471 0.547712 AGCCTAAGAGGGTGCTTGGA 60.548 55.000 0.00 0.00 45.86 3.53
370 472 0.548510 GCCTAAGAGGGTGCTTGGAT 59.451 55.000 0.00 0.00 35.37 3.41
371 473 1.768870 GCCTAAGAGGGTGCTTGGATA 59.231 52.381 0.00 0.00 35.37 2.59
372 474 2.485657 GCCTAAGAGGGTGCTTGGATAC 60.486 54.545 0.00 0.00 35.37 2.24
373 475 5.017113 GCCTAAGAGGGTGCTTGGATACA 62.017 52.174 0.00 0.00 40.05 2.29
374 476 6.446953 GCCTAAGAGGGTGCTTGGATACAA 62.447 50.000 0.00 0.00 45.71 2.41
391 493 7.710766 GGATACAAGGGACTATTTTTAGTCG 57.289 40.000 6.98 0.00 45.51 4.18
392 494 7.495055 GGATACAAGGGACTATTTTTAGTCGA 58.505 38.462 6.98 0.00 45.51 4.20
393 495 7.437565 GGATACAAGGGACTATTTTTAGTCGAC 59.562 40.741 7.70 7.70 45.51 4.20
394 496 6.356186 ACAAGGGACTATTTTTAGTCGACT 57.644 37.500 23.66 23.66 45.51 4.18
395 497 7.472334 ACAAGGGACTATTTTTAGTCGACTA 57.528 36.000 21.25 21.25 45.51 2.59
396 498 7.899973 ACAAGGGACTATTTTTAGTCGACTAA 58.100 34.615 29.57 29.57 45.51 2.24
397 499 8.370182 ACAAGGGACTATTTTTAGTCGACTAAA 58.630 33.333 35.56 35.56 45.51 1.85
398 500 9.211485 CAAGGGACTATTTTTAGTCGACTAAAA 57.789 33.333 40.08 40.08 46.05 1.52
425 527 9.839817 ATAATCTCTTTTAGAGGCTAAAGTTCC 57.160 33.333 7.84 0.00 42.54 3.62
426 528 6.681729 TCTCTTTTAGAGGCTAAAGTTCCA 57.318 37.500 7.84 0.00 42.54 3.53
427 529 7.074653 TCTCTTTTAGAGGCTAAAGTTCCAA 57.925 36.000 7.84 0.00 42.54 3.53
428 530 7.162082 TCTCTTTTAGAGGCTAAAGTTCCAAG 58.838 38.462 7.84 0.00 42.54 3.61
429 531 5.705905 TCTTTTAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 33.97 4.01
430 532 4.634012 TTAGAGGCTAAAGTTCCAAGCA 57.366 40.909 0.00 0.00 38.01 3.91
431 533 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
432 534 1.813178 GAGGCTAAAGTTCCAAGCACC 59.187 52.381 0.00 0.00 38.01 5.01
433 535 0.888619 GGCTAAAGTTCCAAGCACCC 59.111 55.000 7.02 0.00 38.01 4.61
434 536 0.888619 GCTAAAGTTCCAAGCACCCC 59.111 55.000 0.00 0.00 36.26 4.95
435 537 1.547901 GCTAAAGTTCCAAGCACCCCT 60.548 52.381 0.00 0.00 36.26 4.79
436 538 2.162681 CTAAAGTTCCAAGCACCCCTG 58.837 52.381 0.00 0.00 0.00 4.45
437 539 0.555769 AAAGTTCCAAGCACCCCTGA 59.444 50.000 0.00 0.00 0.00 3.86
438 540 0.178990 AAGTTCCAAGCACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
439 541 1.062488 AGTTCCAAGCACCCCTGACT 61.062 55.000 0.00 0.00 0.00 3.41
440 542 0.690762 GTTCCAAGCACCCCTGACTA 59.309 55.000 0.00 0.00 0.00 2.59
441 543 1.073284 GTTCCAAGCACCCCTGACTAA 59.927 52.381 0.00 0.00 0.00 2.24
442 544 1.440618 TCCAAGCACCCCTGACTAAA 58.559 50.000 0.00 0.00 0.00 1.85
443 545 1.351017 TCCAAGCACCCCTGACTAAAG 59.649 52.381 0.00 0.00 0.00 1.85
444 546 1.351017 CCAAGCACCCCTGACTAAAGA 59.649 52.381 0.00 0.00 0.00 2.52
445 547 2.616510 CCAAGCACCCCTGACTAAAGAG 60.617 54.545 0.00 0.00 0.00 2.85
446 548 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
447 549 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
448 550 1.208293 GCACCCCTGACTAAAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
449 551 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
450 552 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
451 553 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
452 554 2.962421 CCCCTGACTAAAGAGAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
453 555 2.962421 CCCTGACTAAAGAGAGGCTAGG 59.038 54.545 0.00 0.00 0.00 3.02
454 556 3.373220 CCCTGACTAAAGAGAGGCTAGGA 60.373 52.174 0.00 0.00 29.08 2.94
455 557 3.634910 CCTGACTAAAGAGAGGCTAGGAC 59.365 52.174 0.00 0.00 29.08 3.85
456 558 4.532834 CTGACTAAAGAGAGGCTAGGACT 58.467 47.826 0.00 0.00 0.00 3.85
457 559 5.398126 CCTGACTAAAGAGAGGCTAGGACTA 60.398 48.000 0.00 0.00 29.08 2.59
458 560 5.686753 TGACTAAAGAGAGGCTAGGACTAG 58.313 45.833 1.98 1.98 36.29 2.57
459 561 5.192121 TGACTAAAGAGAGGCTAGGACTAGT 59.808 44.000 0.00 0.00 35.65 2.57
460 562 5.687780 ACTAAAGAGAGGCTAGGACTAGTC 58.312 45.833 14.87 14.87 38.03 2.59
466 568 3.306472 AGGCTAGGACTAGTCTTGAGG 57.694 52.381 21.88 10.56 45.03 3.86
467 569 1.684450 GGCTAGGACTAGTCTTGAGGC 59.316 57.143 21.88 21.38 35.06 4.70
468 570 2.661718 GCTAGGACTAGTCTTGAGGCT 58.338 52.381 21.88 11.79 35.65 4.58
469 571 3.435313 GGCTAGGACTAGTCTTGAGGCTA 60.435 52.174 24.87 16.06 35.06 3.93
470 572 4.208746 GCTAGGACTAGTCTTGAGGCTAA 58.791 47.826 21.88 0.00 35.65 3.09
471 573 4.645588 GCTAGGACTAGTCTTGAGGCTAAA 59.354 45.833 21.88 0.00 35.65 1.85
472 574 5.127356 GCTAGGACTAGTCTTGAGGCTAAAA 59.873 44.000 21.88 0.00 35.65 1.52
473 575 6.183360 GCTAGGACTAGTCTTGAGGCTAAAAT 60.183 42.308 21.88 0.00 35.65 1.82
474 576 6.228616 AGGACTAGTCTTGAGGCTAAAATC 57.771 41.667 21.88 0.73 0.00 2.17
475 577 5.961421 AGGACTAGTCTTGAGGCTAAAATCT 59.039 40.000 21.88 3.06 0.00 2.40
476 578 6.442244 AGGACTAGTCTTGAGGCTAAAATCTT 59.558 38.462 21.88 0.00 0.00 2.40
477 579 7.037945 AGGACTAGTCTTGAGGCTAAAATCTTT 60.038 37.037 21.88 0.00 0.00 2.52
478 580 7.608376 GGACTAGTCTTGAGGCTAAAATCTTTT 59.392 37.037 21.88 0.00 0.00 2.27
479 581 9.654663 GACTAGTCTTGAGGCTAAAATCTTTTA 57.345 33.333 15.91 0.00 0.00 1.52
493 595 9.025041 CTAAAATCTTTTAGTCATGGGAAACCT 57.975 33.333 12.31 0.00 45.91 3.50
523 625 9.600432 AAAATATGTATTAGCTCTCTCTCTCCT 57.400 33.333 0.00 0.00 0.00 3.69
524 626 8.807948 AATATGTATTAGCTCTCTCTCTCCTC 57.192 38.462 0.00 0.00 0.00 3.71
525 627 5.638530 TGTATTAGCTCTCTCTCTCCTCA 57.361 43.478 0.00 0.00 0.00 3.86
526 628 6.199557 TGTATTAGCTCTCTCTCTCCTCAT 57.800 41.667 0.00 0.00 0.00 2.90
527 629 6.609876 TGTATTAGCTCTCTCTCTCCTCATT 58.390 40.000 0.00 0.00 0.00 2.57
528 630 7.066142 TGTATTAGCTCTCTCTCTCCTCATTT 58.934 38.462 0.00 0.00 0.00 2.32
529 631 8.221251 TGTATTAGCTCTCTCTCTCCTCATTTA 58.779 37.037 0.00 0.00 0.00 1.40
530 632 9.073475 GTATTAGCTCTCTCTCTCCTCATTTAA 57.927 37.037 0.00 0.00 0.00 1.52
531 633 8.725606 ATTAGCTCTCTCTCTCCTCATTTAAT 57.274 34.615 0.00 0.00 0.00 1.40
532 634 8.546083 TTAGCTCTCTCTCTCCTCATTTAATT 57.454 34.615 0.00 0.00 0.00 1.40
533 635 7.054491 AGCTCTCTCTCTCCTCATTTAATTC 57.946 40.000 0.00 0.00 0.00 2.17
534 636 6.041979 AGCTCTCTCTCTCCTCATTTAATTCC 59.958 42.308 0.00 0.00 0.00 3.01
535 637 6.041979 GCTCTCTCTCTCCTCATTTAATTCCT 59.958 42.308 0.00 0.00 0.00 3.36
536 638 7.595819 TCTCTCTCTCCTCATTTAATTCCTC 57.404 40.000 0.00 0.00 0.00 3.71
537 639 7.361438 TCTCTCTCTCCTCATTTAATTCCTCT 58.639 38.462 0.00 0.00 0.00 3.69
538 640 7.505585 TCTCTCTCTCCTCATTTAATTCCTCTC 59.494 40.741 0.00 0.00 0.00 3.20
539 641 6.553100 TCTCTCTCCTCATTTAATTCCTCTCC 59.447 42.308 0.00 0.00 0.00 3.71
540 642 6.448202 TCTCTCCTCATTTAATTCCTCTCCT 58.552 40.000 0.00 0.00 0.00 3.69
541 643 6.905776 TCTCTCCTCATTTAATTCCTCTCCTT 59.094 38.462 0.00 0.00 0.00 3.36
542 644 8.068110 TCTCTCCTCATTTAATTCCTCTCCTTA 58.932 37.037 0.00 0.00 0.00 2.69
543 645 8.256356 TCTCCTCATTTAATTCCTCTCCTTAG 57.744 38.462 0.00 0.00 0.00 2.18
544 646 7.846823 TCTCCTCATTTAATTCCTCTCCTTAGT 59.153 37.037 0.00 0.00 0.00 2.24
545 647 8.393959 TCCTCATTTAATTCCTCTCCTTAGTT 57.606 34.615 0.00 0.00 0.00 2.24
546 648 8.487028 TCCTCATTTAATTCCTCTCCTTAGTTC 58.513 37.037 0.00 0.00 0.00 3.01
547 649 8.490311 CCTCATTTAATTCCTCTCCTTAGTTCT 58.510 37.037 0.00 0.00 0.00 3.01
548 650 9.323985 CTCATTTAATTCCTCTCCTTAGTTCTG 57.676 37.037 0.00 0.00 0.00 3.02
549 651 8.267894 TCATTTAATTCCTCTCCTTAGTTCTGG 58.732 37.037 0.00 0.00 0.00 3.86
550 652 7.808279 TTTAATTCCTCTCCTTAGTTCTGGA 57.192 36.000 0.00 0.00 0.00 3.86
551 653 7.996758 TTAATTCCTCTCCTTAGTTCTGGAT 57.003 36.000 0.00 0.00 0.00 3.41
552 654 6.899892 AATTCCTCTCCTTAGTTCTGGATT 57.100 37.500 0.00 0.00 0.00 3.01
553 655 5.683876 TTCCTCTCCTTAGTTCTGGATTG 57.316 43.478 0.00 0.00 0.00 2.67
554 656 4.033709 TCCTCTCCTTAGTTCTGGATTGG 58.966 47.826 0.00 0.00 0.00 3.16
555 657 4.033709 CCTCTCCTTAGTTCTGGATTGGA 58.966 47.826 0.00 0.00 31.05 3.53
556 658 4.100808 CCTCTCCTTAGTTCTGGATTGGAG 59.899 50.000 0.00 0.00 40.47 3.86
557 659 4.033709 TCTCCTTAGTTCTGGATTGGAGG 58.966 47.826 0.00 0.00 39.80 4.30
558 660 3.115390 TCCTTAGTTCTGGATTGGAGGG 58.885 50.000 0.00 0.00 0.00 4.30
559 661 2.846827 CCTTAGTTCTGGATTGGAGGGT 59.153 50.000 0.00 0.00 0.00 4.34
560 662 3.267031 CCTTAGTTCTGGATTGGAGGGTT 59.733 47.826 0.00 0.00 0.00 4.11
561 663 4.263949 CCTTAGTTCTGGATTGGAGGGTTT 60.264 45.833 0.00 0.00 0.00 3.27
562 664 3.160679 AGTTCTGGATTGGAGGGTTTG 57.839 47.619 0.00 0.00 0.00 2.93
563 665 2.171003 GTTCTGGATTGGAGGGTTTGG 58.829 52.381 0.00 0.00 0.00 3.28
564 666 1.753903 TCTGGATTGGAGGGTTTGGA 58.246 50.000 0.00 0.00 0.00 3.53
565 667 1.635487 TCTGGATTGGAGGGTTTGGAG 59.365 52.381 0.00 0.00 0.00 3.86
566 668 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
567 669 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
568 670 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
569 671 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
570 672 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
571 673 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
572 674 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
573 675 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
574 676 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
575 677 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
576 678 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
577 679 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
578 680 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
579 681 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
580 682 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
581 683 6.323739 GGGTTTGGAGGATAATAAATGCTCAA 59.676 38.462 8.48 0.00 38.10 3.02
582 684 7.015584 GGGTTTGGAGGATAATAAATGCTCAAT 59.984 37.037 8.48 0.00 38.10 2.57
583 685 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
586 688 9.866655 TTGGAGGATAATAAATGCTCAATAACT 57.133 29.630 8.48 0.00 38.10 2.24
616 718 8.660295 TTTAGTCTCTTTAGTACTTGGATCCA 57.340 34.615 11.44 11.44 0.00 3.41
617 719 8.660295 TTAGTCTCTTTAGTACTTGGATCCAA 57.340 34.615 25.53 25.53 0.00 3.53
633 735 2.322355 CCAAGCATGGGTGAGACTAG 57.678 55.000 0.00 0.00 43.51 2.57
634 736 1.661341 CAAGCATGGGTGAGACTAGC 58.339 55.000 0.00 0.00 0.00 3.42
635 737 1.065926 CAAGCATGGGTGAGACTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
636 738 1.279496 AGCATGGGTGAGACTAGCAA 58.721 50.000 0.00 0.00 0.00 3.91
637 739 1.630369 AGCATGGGTGAGACTAGCAAA 59.370 47.619 0.00 0.00 0.00 3.68
638 740 2.240667 AGCATGGGTGAGACTAGCAAAT 59.759 45.455 0.00 0.00 0.00 2.32
639 741 3.019564 GCATGGGTGAGACTAGCAAATT 58.980 45.455 0.00 0.00 0.00 1.82
640 742 3.445096 GCATGGGTGAGACTAGCAAATTT 59.555 43.478 0.00 0.00 0.00 1.82
641 743 4.082026 GCATGGGTGAGACTAGCAAATTTT 60.082 41.667 0.00 0.00 0.00 1.82
642 744 5.125417 GCATGGGTGAGACTAGCAAATTTTA 59.875 40.000 0.00 0.00 0.00 1.52
643 745 6.678900 GCATGGGTGAGACTAGCAAATTTTAG 60.679 42.308 0.00 0.00 0.00 1.85
644 746 5.876357 TGGGTGAGACTAGCAAATTTTAGT 58.124 37.500 2.80 2.80 33.00 2.24
645 747 5.938125 TGGGTGAGACTAGCAAATTTTAGTC 59.062 40.000 17.07 17.07 43.83 2.59
646 748 5.354513 GGGTGAGACTAGCAAATTTTAGTCC 59.645 44.000 19.58 14.10 44.32 3.85
647 749 5.354513 GGTGAGACTAGCAAATTTTAGTCCC 59.645 44.000 19.58 12.72 44.32 4.46
648 750 5.938125 GTGAGACTAGCAAATTTTAGTCCCA 59.062 40.000 19.58 14.56 44.32 4.37
649 751 5.938125 TGAGACTAGCAAATTTTAGTCCCAC 59.062 40.000 19.58 14.21 44.32 4.61
650 752 6.128138 AGACTAGCAAATTTTAGTCCCACT 57.872 37.500 19.58 5.54 44.32 4.00
651 753 7.038587 TGAGACTAGCAAATTTTAGTCCCACTA 60.039 37.037 19.58 6.11 44.32 2.74
652 754 7.104290 AGACTAGCAAATTTTAGTCCCACTAC 58.896 38.462 19.58 2.31 44.32 2.73
653 755 7.017319 ACTAGCAAATTTTAGTCCCACTACT 57.983 36.000 0.00 0.00 28.93 2.57
654 756 7.459234 ACTAGCAAATTTTAGTCCCACTACTT 58.541 34.615 0.00 0.00 28.93 2.24
655 757 7.942894 ACTAGCAAATTTTAGTCCCACTACTTT 59.057 33.333 0.00 0.00 28.93 2.66
656 758 7.597288 AGCAAATTTTAGTCCCACTACTTTT 57.403 32.000 0.00 0.00 28.93 2.27
657 759 8.700439 AGCAAATTTTAGTCCCACTACTTTTA 57.300 30.769 0.00 0.00 28.93 1.52
658 760 8.793592 AGCAAATTTTAGTCCCACTACTTTTAG 58.206 33.333 0.00 0.00 28.93 1.85
659 761 8.573885 GCAAATTTTAGTCCCACTACTTTTAGT 58.426 33.333 0.00 0.00 39.30 2.24
664 766 9.729281 TTTTAGTCCCACTACTTTTAGTTATGG 57.271 33.333 0.00 0.00 36.31 2.74
665 767 6.309389 AGTCCCACTACTTTTAGTTATGGG 57.691 41.667 16.41 16.41 46.05 4.00
668 770 6.309389 CCCACTACTTTTAGTTATGGGACT 57.691 41.667 17.13 0.00 46.91 3.85
669 771 7.427989 CCCACTACTTTTAGTTATGGGACTA 57.572 40.000 17.13 0.00 46.91 2.59
670 772 7.854337 CCCACTACTTTTAGTTATGGGACTAA 58.146 38.462 17.13 0.00 46.91 2.24
671 773 8.323567 CCCACTACTTTTAGTTATGGGACTAAA 58.676 37.037 17.13 6.21 46.91 1.85
679 781 8.947055 TTTAGTTATGGGACTAAAACGTATCC 57.053 34.615 7.53 0.00 44.67 2.59
680 782 6.549433 AGTTATGGGACTAAAACGTATCCA 57.451 37.500 0.00 0.00 32.45 3.41
681 783 6.949715 AGTTATGGGACTAAAACGTATCCAA 58.050 36.000 0.00 0.00 32.45 3.53
682 784 7.046033 AGTTATGGGACTAAAACGTATCCAAG 58.954 38.462 0.00 0.00 32.45 3.61
683 785 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
684 786 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
685 787 4.004982 GGGACTAAAACGTATCCAAGCAA 58.995 43.478 0.00 0.00 32.45 3.91
686 788 4.456566 GGGACTAAAACGTATCCAAGCAAA 59.543 41.667 0.00 0.00 32.45 3.68
687 789 5.048573 GGGACTAAAACGTATCCAAGCAAAA 60.049 40.000 0.00 0.00 32.45 2.44
688 790 6.084277 GGACTAAAACGTATCCAAGCAAAAG 58.916 40.000 0.00 0.00 0.00 2.27
689 791 6.293790 GGACTAAAACGTATCCAAGCAAAAGT 60.294 38.462 0.00 0.00 0.00 2.66
690 792 7.095102 GGACTAAAACGTATCCAAGCAAAAGTA 60.095 37.037 0.00 0.00 0.00 2.24
691 793 7.803724 ACTAAAACGTATCCAAGCAAAAGTAG 58.196 34.615 0.00 0.00 0.00 2.57
692 794 6.628919 AAAACGTATCCAAGCAAAAGTAGT 57.371 33.333 0.00 0.00 0.00 2.73
693 795 5.607119 AACGTATCCAAGCAAAAGTAGTG 57.393 39.130 0.00 0.00 0.00 2.74
694 796 4.000988 ACGTATCCAAGCAAAAGTAGTGG 58.999 43.478 0.00 0.00 0.00 4.00
695 797 3.374058 CGTATCCAAGCAAAAGTAGTGGG 59.626 47.826 0.00 0.00 0.00 4.61
696 798 3.806949 ATCCAAGCAAAAGTAGTGGGA 57.193 42.857 0.00 0.00 0.00 4.37
697 799 2.858745 TCCAAGCAAAAGTAGTGGGAC 58.141 47.619 0.00 0.00 0.00 4.46
698 800 2.441750 TCCAAGCAAAAGTAGTGGGACT 59.558 45.455 0.00 0.00 0.00 3.85
699 801 3.649023 TCCAAGCAAAAGTAGTGGGACTA 59.351 43.478 0.00 0.00 0.00 2.59
700 802 4.103469 TCCAAGCAAAAGTAGTGGGACTAA 59.897 41.667 0.00 0.00 31.62 2.24
701 803 4.825085 CCAAGCAAAAGTAGTGGGACTAAA 59.175 41.667 0.00 0.00 31.62 1.85
702 804 5.300792 CCAAGCAAAAGTAGTGGGACTAAAA 59.699 40.000 0.00 0.00 31.62 1.52
703 805 6.206498 CAAGCAAAAGTAGTGGGACTAAAAC 58.794 40.000 0.00 0.00 31.62 2.43
704 806 4.514066 AGCAAAAGTAGTGGGACTAAAACG 59.486 41.667 0.00 0.00 31.62 3.60
705 807 4.274214 GCAAAAGTAGTGGGACTAAAACGT 59.726 41.667 0.00 0.00 31.62 3.99
706 808 5.466393 GCAAAAGTAGTGGGACTAAAACGTA 59.534 40.000 0.00 0.00 31.62 3.57
707 809 6.148315 GCAAAAGTAGTGGGACTAAAACGTAT 59.852 38.462 0.00 0.00 31.62 3.06
708 810 7.622880 GCAAAAGTAGTGGGACTAAAACGTATC 60.623 40.741 0.00 0.00 31.62 2.24
709 811 5.588958 AGTAGTGGGACTAAAACGTATCC 57.411 43.478 0.00 0.00 31.62 2.59
710 812 5.018809 AGTAGTGGGACTAAAACGTATCCA 58.981 41.667 0.00 0.00 31.62 3.41
711 813 4.895668 AGTGGGACTAAAACGTATCCAA 57.104 40.909 0.00 0.00 32.45 3.53
712 814 4.828829 AGTGGGACTAAAACGTATCCAAG 58.171 43.478 0.00 0.00 32.45 3.61
713 815 3.373130 GTGGGACTAAAACGTATCCAAGC 59.627 47.826 0.00 0.00 32.45 4.01
714 816 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
715 817 4.196971 GGGACTAAAACGTATCCAAGCAT 58.803 43.478 0.00 0.00 32.45 3.79
716 818 5.104859 TGGGACTAAAACGTATCCAAGCATA 60.105 40.000 0.00 0.00 32.45 3.14
717 819 5.235831 GGGACTAAAACGTATCCAAGCATAC 59.764 44.000 0.00 0.00 32.45 2.39
718 820 6.047231 GGACTAAAACGTATCCAAGCATACT 58.953 40.000 0.00 0.00 0.00 2.12
719 821 6.200475 GGACTAAAACGTATCCAAGCATACTC 59.800 42.308 0.00 0.00 0.00 2.59
781 884 5.074746 AGGACAGGGTGTTTTTCCTAATT 57.925 39.130 0.00 0.00 0.00 1.40
847 951 3.590574 AGTCCCAAACCCCAGGGC 61.591 66.667 0.00 0.00 45.07 5.19
848 952 3.590574 GTCCCAAACCCCAGGGCT 61.591 66.667 0.00 0.00 45.07 5.19
866 970 4.363990 CTCTGTCTGCCGTGCCGT 62.364 66.667 0.00 0.00 0.00 5.68
867 971 4.662961 TCTGTCTGCCGTGCCGTG 62.663 66.667 0.00 0.00 0.00 4.94
894 999 2.577059 CAAACCCTCGCTCGCCTA 59.423 61.111 0.00 0.00 0.00 3.93
903 1008 2.524394 GCTCGCCTATCCCCTCCA 60.524 66.667 0.00 0.00 0.00 3.86
937 1042 0.823356 CTGCCCCCATACAAATCCCG 60.823 60.000 0.00 0.00 0.00 5.14
989 1119 4.760047 CTCCCCCGCCGTCAACAG 62.760 72.222 0.00 0.00 0.00 3.16
1256 1397 1.402896 CGAGCCTGAGGGATTGCCTA 61.403 60.000 0.00 0.00 33.58 3.93
1264 1405 4.098501 CCTGAGGGATTGCCTATTTTGTTC 59.901 45.833 0.00 0.00 33.58 3.18
1282 1427 3.181495 TGTTCGTTGTTGTGGGATGAAAC 60.181 43.478 0.00 0.00 0.00 2.78
1283 1428 2.925724 TCGTTGTTGTGGGATGAAACT 58.074 42.857 0.00 0.00 0.00 2.66
1285 1430 2.616376 CGTTGTTGTGGGATGAAACTGA 59.384 45.455 0.00 0.00 0.00 3.41
1286 1431 3.066064 CGTTGTTGTGGGATGAAACTGAA 59.934 43.478 0.00 0.00 0.00 3.02
1287 1432 4.439426 CGTTGTTGTGGGATGAAACTGAAA 60.439 41.667 0.00 0.00 0.00 2.69
1288 1433 5.600696 GTTGTTGTGGGATGAAACTGAAAT 58.399 37.500 0.00 0.00 0.00 2.17
1289 1434 5.199024 TGTTGTGGGATGAAACTGAAATG 57.801 39.130 0.00 0.00 0.00 2.32
1290 1435 4.039004 TGTTGTGGGATGAAACTGAAATGG 59.961 41.667 0.00 0.00 0.00 3.16
1291 1436 3.843422 TGTGGGATGAAACTGAAATGGT 58.157 40.909 0.00 0.00 0.00 3.55
1292 1437 4.222336 TGTGGGATGAAACTGAAATGGTT 58.778 39.130 0.00 0.00 0.00 3.67
1293 1438 4.039004 TGTGGGATGAAACTGAAATGGTTG 59.961 41.667 0.00 0.00 0.00 3.77
1294 1439 3.006752 TGGGATGAAACTGAAATGGTTGC 59.993 43.478 0.00 0.00 0.00 4.17
1295 1440 3.588955 GGATGAAACTGAAATGGTTGCC 58.411 45.455 0.00 0.00 0.00 4.52
1296 1441 2.791383 TGAAACTGAAATGGTTGCCG 57.209 45.000 0.00 0.00 0.00 5.69
1297 1442 2.028130 TGAAACTGAAATGGTTGCCGT 58.972 42.857 0.00 0.00 0.00 5.68
1298 1443 2.428890 TGAAACTGAAATGGTTGCCGTT 59.571 40.909 0.00 0.00 33.67 4.44
1299 1444 3.118956 TGAAACTGAAATGGTTGCCGTTT 60.119 39.130 5.16 5.16 44.37 3.60
1300 1445 3.535280 AACTGAAATGGTTGCCGTTTT 57.465 38.095 6.79 0.00 42.10 2.43
1301 1446 3.092334 ACTGAAATGGTTGCCGTTTTC 57.908 42.857 6.79 6.63 42.10 2.29
1302 1447 2.693074 ACTGAAATGGTTGCCGTTTTCT 59.307 40.909 6.79 0.00 42.10 2.52
1361 1506 5.603170 ATTTTGAATGGCTATGGTTGGAG 57.397 39.130 0.00 0.00 0.00 3.86
1413 1559 1.584380 GCTCCTGCTGTTGCTTCTGG 61.584 60.000 0.00 0.00 40.48 3.86
1415 1561 1.602888 CCTGCTGTTGCTTCTGGCT 60.603 57.895 0.00 0.00 42.39 4.75
1419 1565 1.271543 TGCTGTTGCTTCTGGCTATGT 60.272 47.619 0.00 0.00 42.39 2.29
1431 1577 1.479323 TGGCTATGTGGTTCTACGGAC 59.521 52.381 0.00 0.00 0.00 4.79
1441 1587 2.479219 GGTTCTACGGACGGATCAAGTC 60.479 54.545 10.92 10.92 37.86 3.01
1451 1597 0.329596 GGATCAAGTCCACTGCCCTT 59.670 55.000 0.00 0.00 46.96 3.95
1457 1603 0.111253 AGTCCACTGCCCTTTTCCTG 59.889 55.000 0.00 0.00 0.00 3.86
1458 1604 0.895559 GTCCACTGCCCTTTTCCTGG 60.896 60.000 0.00 0.00 0.00 4.45
1558 1706 3.570540 TCTCCTGGTATCAGAGGACATG 58.429 50.000 3.99 0.00 43.49 3.21
1560 1708 1.269988 CCTGGTATCAGAGGACATGCG 60.270 57.143 3.99 0.00 43.49 4.73
1561 1709 0.104855 TGGTATCAGAGGACATGCGC 59.895 55.000 0.00 0.00 0.00 6.09
1562 1710 0.601311 GGTATCAGAGGACATGCGCC 60.601 60.000 4.18 0.00 0.00 6.53
1570 1718 2.648724 GACATGCGCCGCGATTTG 60.649 61.111 18.91 12.31 0.00 2.32
1578 1726 2.976840 GCCGCGATTTGTTGCCTCA 61.977 57.895 8.23 0.00 0.00 3.86
1592 1740 1.915489 TGCCTCATGTACCCAATCAGT 59.085 47.619 0.00 0.00 0.00 3.41
1593 1741 2.292267 GCCTCATGTACCCAATCAGTG 58.708 52.381 0.00 0.00 0.00 3.66
1605 1753 2.481104 CCAATCAGTGGCGTGTTTTGTT 60.481 45.455 0.00 0.00 41.72 2.83
1613 1761 2.948979 TGGCGTGTTTTGTTCTCTTGAT 59.051 40.909 0.00 0.00 0.00 2.57
1615 1763 4.213270 TGGCGTGTTTTGTTCTCTTGATAG 59.787 41.667 0.00 0.00 0.00 2.08
1616 1764 4.213482 GGCGTGTTTTGTTCTCTTGATAGT 59.787 41.667 0.00 0.00 0.00 2.12
1617 1765 5.407387 GGCGTGTTTTGTTCTCTTGATAGTA 59.593 40.000 0.00 0.00 0.00 1.82
1618 1766 6.073440 GGCGTGTTTTGTTCTCTTGATAGTAA 60.073 38.462 0.00 0.00 0.00 2.24
1649 1797 3.838565 TCTGGGTTGATTTTGGCTTGTA 58.161 40.909 0.00 0.00 0.00 2.41
1690 1838 5.948758 GGATTTCTCATCTTCCACTTTTCCT 59.051 40.000 0.00 0.00 0.00 3.36
1691 1839 7.112779 GGATTTCTCATCTTCCACTTTTCCTA 58.887 38.462 0.00 0.00 0.00 2.94
1692 1840 7.611855 GGATTTCTCATCTTCCACTTTTCCTAA 59.388 37.037 0.00 0.00 0.00 2.69
1693 1841 8.940397 ATTTCTCATCTTCCACTTTTCCTAAA 57.060 30.769 0.00 0.00 0.00 1.85
1694 1842 8.760980 TTTCTCATCTTCCACTTTTCCTAAAA 57.239 30.769 0.00 0.00 0.00 1.52
1764 1919 5.332743 TGCTAATCTTCCACTTTTCCCAAT 58.667 37.500 0.00 0.00 0.00 3.16
1784 1939 5.445845 CAATTTTTGATGCCTCTTTTGTGC 58.554 37.500 0.00 0.00 0.00 4.57
1785 1940 3.815856 TTTTGATGCCTCTTTTGTGCA 57.184 38.095 0.00 0.00 39.68 4.57
1888 2044 6.662865 TTGGTTCATTTTCTGGCAAGAATA 57.337 33.333 3.86 0.00 42.04 1.75
1922 2078 8.789762 AGCGTTTATGGTTAAAATCTTACACTT 58.210 29.630 0.00 0.00 0.00 3.16
1927 2083 7.939784 ATGGTTAAAATCTTACACTTCCCTC 57.060 36.000 0.00 0.00 0.00 4.30
1928 2084 7.086685 TGGTTAAAATCTTACACTTCCCTCT 57.913 36.000 0.00 0.00 0.00 3.69
2057 2213 4.706527 CGTGAGAGCAAGAGATTTGAAAC 58.293 43.478 0.00 0.00 0.00 2.78
2113 2269 3.584848 AGGTTGAATTCAGCTACCTCAGT 59.415 43.478 20.15 3.69 30.92 3.41
2160 2316 0.890542 AAGTGCTCGGAATGCAAGCA 60.891 50.000 5.92 5.92 43.40 3.91
2317 2473 0.462759 ATACCCTTCAGCAGCTTCGC 60.463 55.000 0.00 0.00 0.00 4.70
2480 2636 2.483106 CCTGCGCATTTCAGATGATAGG 59.517 50.000 12.24 0.00 33.54 2.57
2493 2649 4.895889 CAGATGATAGGACTGTGGAAGGTA 59.104 45.833 0.00 0.00 0.00 3.08
2524 2680 6.072508 TCCTTTCTGAACATTGACAGTTATGC 60.073 38.462 12.40 0.00 35.84 3.14
2569 2736 8.514330 AGTGTATTTTGTTAGACCTTTTGTGA 57.486 30.769 0.00 0.00 0.00 3.58
2570 2737 9.131791 AGTGTATTTTGTTAGACCTTTTGTGAT 57.868 29.630 0.00 0.00 0.00 3.06
2571 2738 9.744468 GTGTATTTTGTTAGACCTTTTGTGATT 57.256 29.630 0.00 0.00 0.00 2.57
2582 2749 6.714810 AGACCTTTTGTGATTAATGTAGTGCA 59.285 34.615 0.00 0.00 0.00 4.57
2626 2793 0.394080 GGAAGAAGGATGCTGCTGCT 60.394 55.000 17.00 2.26 40.48 4.24
2717 2884 7.326454 TCTTGCTTCTGATATCTATATGCACC 58.674 38.462 3.98 0.00 0.00 5.01
2760 2927 6.020372 GCATTCTTTTCTTCGACATCTTCTG 58.980 40.000 0.00 0.00 0.00 3.02
2914 3081 2.971901 TGTGGTCTAGAGGTCTGTCA 57.028 50.000 0.00 0.00 0.00 3.58
2955 3122 5.703978 TTGTCAATTACCAGGAATGTGTG 57.296 39.130 0.00 0.00 0.00 3.82
2963 3130 3.490348 ACCAGGAATGTGTGGAAAGAAG 58.510 45.455 0.00 0.00 37.27 2.85
2998 3165 3.188492 CAAATGCTTGTTGTCAGTTGCA 58.812 40.909 0.00 0.00 32.75 4.08
3024 3191 9.376075 AGAAAACATCAATCATAGACACTACAG 57.624 33.333 0.00 0.00 0.00 2.74
3109 3277 3.802948 AGCTAGGGTCAGTACATTTCG 57.197 47.619 0.00 0.00 0.00 3.46
3112 3280 3.118884 GCTAGGGTCAGTACATTTCGGAA 60.119 47.826 0.00 0.00 0.00 4.30
3116 3284 3.556423 GGGTCAGTACATTTCGGAACACT 60.556 47.826 0.00 0.00 0.00 3.55
3247 3423 7.620094 AGTTGTAGTATGATACCCTTGAAGTCT 59.380 37.037 0.00 0.00 0.00 3.24
3328 3504 8.352201 TGAACTTGATCAACAAAAAGTAGATGG 58.648 33.333 3.38 0.00 38.08 3.51
3530 3706 4.288626 ACAGTTTATAAGCCTGGAGGTCAA 59.711 41.667 14.94 0.00 37.57 3.18
3562 3738 7.614908 TCATTGTATTAATGCGTTACTTCGTC 58.385 34.615 0.00 0.00 0.00 4.20
3643 3819 0.037160 ACCGTTACCTTTCCGGCAAT 59.963 50.000 0.00 0.00 45.49 3.56
3766 3949 7.669427 ACTCTTGATTGGCATTTCATTGTTAA 58.331 30.769 1.99 0.00 0.00 2.01
3893 4076 8.090831 TGAGGTTAGTGATATATTGCATCAGAC 58.909 37.037 0.00 0.00 33.18 3.51
3921 4104 4.946784 GTGTTTGTCACTTTGTCTCTGT 57.053 40.909 0.00 0.00 43.13 3.41
4082 4265 4.937620 GCTTCATACCAACTGAATCTCACA 59.062 41.667 0.00 0.00 32.50 3.58
4092 4275 7.768120 ACCAACTGAATCTCACATTCTCTATTC 59.232 37.037 0.00 0.00 0.00 1.75
4191 4374 1.851304 TTCTGCAATTCCATGGGTCC 58.149 50.000 13.02 0.00 0.00 4.46
4192 4375 0.703488 TCTGCAATTCCATGGGTCCA 59.297 50.000 13.02 1.83 0.00 4.02
4318 4517 0.886490 CTTCACTTGTTGCGGCCTCT 60.886 55.000 0.00 0.00 0.00 3.69
4387 4586 3.372060 GGTAAGTGCAGCTTTCACAAAC 58.628 45.455 15.79 12.57 38.57 2.93
4435 4634 5.869344 TGCTTGAGCTAACATGTACTACTTG 59.131 40.000 0.00 1.44 42.66 3.16
4700 4918 0.533951 GGGAAGAAGCAATGCCCAAG 59.466 55.000 0.00 0.00 38.68 3.61
4707 4925 1.251251 AGCAATGCCCAAGTTCAGTC 58.749 50.000 0.00 0.00 0.00 3.51
4820 5038 2.202518 CAAATTGGAGCTGCGCCG 60.203 61.111 17.58 0.00 0.00 6.46
4834 5052 4.212913 GCCGCTGATCCTCGCAGA 62.213 66.667 0.00 0.00 35.39 4.26
4956 5182 2.861462 TGTAGTGGTGTGCTTTTTGC 57.139 45.000 0.00 0.00 43.25 3.68
5062 5307 2.803133 GCATGTACATTGGAGAGCGCTA 60.803 50.000 11.50 0.00 0.00 4.26
5159 5406 2.255406 CCTCCCTCCCATGTATGAGAG 58.745 57.143 5.88 0.00 33.03 3.20
5160 5407 2.158249 CCTCCCTCCCATGTATGAGAGA 60.158 54.545 5.11 0.00 34.94 3.10
5161 5408 3.581101 CTCCCTCCCATGTATGAGAGAA 58.419 50.000 5.11 0.00 34.94 2.87
5164 5411 3.649981 CCCTCCCATGTATGAGAGAATGT 59.350 47.826 5.11 0.00 34.94 2.71
5171 5418 2.571202 TGTATGAGAGAATGTGGTGGCA 59.429 45.455 0.00 0.00 0.00 4.92
5172 5419 3.200605 TGTATGAGAGAATGTGGTGGCAT 59.799 43.478 0.00 0.00 0.00 4.40
5175 5422 2.224843 TGAGAGAATGTGGTGGCATTGT 60.225 45.455 0.00 0.00 38.98 2.71
5228 7205 7.113965 CACATTTTGACAGTGCTAATTCTGAAC 59.886 37.037 0.00 0.00 35.84 3.18
5251 7228 2.636403 AGCTCCTGCATGATGCTGTATA 59.364 45.455 19.19 5.22 45.31 1.47
5252 7229 3.263681 AGCTCCTGCATGATGCTGTATAT 59.736 43.478 19.19 1.70 45.31 0.86
5346 7335 0.250640 CTGCTTGAAGCCAGAGGTGT 60.251 55.000 15.43 0.00 41.51 4.16
5351 7340 0.904865 TGAAGCCAGAGGTGTCGGAT 60.905 55.000 0.00 0.00 0.00 4.18
5421 7410 6.037281 GTCCTCGACTCCCAGAAAATTTAATC 59.963 42.308 0.00 0.00 0.00 1.75
5424 7413 7.439655 CCTCGACTCCCAGAAAATTTAATCTAG 59.560 40.741 0.00 0.00 0.00 2.43
5428 7417 9.674068 GACTCCCAGAAAATTTAATCTAGTTCT 57.326 33.333 0.00 0.00 0.00 3.01
5475 7464 3.838565 TCCCCAGTGTGCAATAGAAAAA 58.161 40.909 0.00 0.00 0.00 1.94
5547 7536 2.948979 TGCTTGTGAAACGGTCATCTTT 59.051 40.909 0.00 0.00 42.39 2.52
5566 7555 3.667497 TTGTCTAGTGGCTGAAGACTG 57.333 47.619 12.55 0.00 40.25 3.51
5614 7603 2.943033 ACTATGGTAGCATTCCGTTTGC 59.057 45.455 13.49 0.00 40.45 3.68
5665 7655 8.340618 AGATGTAAAACAAGTCTGCAACATAT 57.659 30.769 0.00 0.00 0.00 1.78
5670 7660 9.490663 GTAAAACAAGTCTGCAACATATGATAC 57.509 33.333 10.38 0.00 0.00 2.24
5676 7666 9.433153 CAAGTCTGCAACATATGATACATATCT 57.567 33.333 10.38 0.00 33.88 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.036294 GTTAGAGAACCAAGGCCGCT 60.036 55.000 0.00 0.00 0.00 5.52
1 2 0.036294 AGTTAGAGAACCAAGGCCGC 60.036 55.000 0.00 0.00 36.08 6.53
2 3 1.550976 AGAGTTAGAGAACCAAGGCCG 59.449 52.381 0.00 0.00 36.08 6.13
3 4 2.937433 GCAGAGTTAGAGAACCAAGGCC 60.937 54.545 0.00 0.00 36.08 5.19
4 5 2.027653 AGCAGAGTTAGAGAACCAAGGC 60.028 50.000 0.00 0.00 36.08 4.35
5 6 3.007398 ACAGCAGAGTTAGAGAACCAAGG 59.993 47.826 0.00 0.00 36.08 3.61
6 7 3.993081 CACAGCAGAGTTAGAGAACCAAG 59.007 47.826 0.00 0.00 36.08 3.61
7 8 3.641436 TCACAGCAGAGTTAGAGAACCAA 59.359 43.478 0.00 0.00 36.08 3.67
8 9 3.005897 GTCACAGCAGAGTTAGAGAACCA 59.994 47.826 0.00 0.00 36.08 3.67
9 10 3.005897 TGTCACAGCAGAGTTAGAGAACC 59.994 47.826 0.00 0.00 36.08 3.62
10 11 3.984633 GTGTCACAGCAGAGTTAGAGAAC 59.015 47.826 0.00 0.00 35.64 3.01
11 12 3.636764 TGTGTCACAGCAGAGTTAGAGAA 59.363 43.478 0.18 0.00 0.00 2.87
12 13 3.222603 TGTGTCACAGCAGAGTTAGAGA 58.777 45.455 0.18 0.00 0.00 3.10
13 14 3.650070 TGTGTCACAGCAGAGTTAGAG 57.350 47.619 0.18 0.00 0.00 2.43
14 15 4.281941 AGATTGTGTCACAGCAGAGTTAGA 59.718 41.667 5.67 0.00 0.00 2.10
15 16 4.388165 CAGATTGTGTCACAGCAGAGTTAG 59.612 45.833 5.67 0.00 0.00 2.34
16 17 4.309933 CAGATTGTGTCACAGCAGAGTTA 58.690 43.478 5.67 0.00 0.00 2.24
170 174 2.757314 AGTGGTAGTTACTTAGGGACGC 59.243 50.000 0.00 0.00 0.00 5.19
193 201 3.858247 AGCCTGGATTAAACGTACACTC 58.142 45.455 0.00 0.00 0.00 3.51
200 208 6.436843 AGAAAATGTAGCCTGGATTAAACG 57.563 37.500 0.00 0.00 0.00 3.60
234 242 3.304861 GGATTTTAAGTTTGTTCGGCGGT 60.305 43.478 7.21 0.00 0.00 5.68
270 278 8.846211 TGGACTTCAGTAGGATTTTAAGTTTTG 58.154 33.333 0.00 0.00 0.00 2.44
287 295 1.625315 TGGACCTGACATGGACTTCAG 59.375 52.381 0.00 0.52 39.25 3.02
348 450 0.326264 CAAGCACCCTCTTAGGCTGT 59.674 55.000 0.00 0.00 36.58 4.40
354 456 3.199946 CCTTGTATCCAAGCACCCTCTTA 59.800 47.826 0.00 0.00 45.57 2.10
355 457 2.025887 CCTTGTATCCAAGCACCCTCTT 60.026 50.000 0.00 0.00 45.57 2.85
356 458 1.561542 CCTTGTATCCAAGCACCCTCT 59.438 52.381 0.00 0.00 45.57 3.69
357 459 1.408822 CCCTTGTATCCAAGCACCCTC 60.409 57.143 0.00 0.00 45.57 4.30
358 460 0.625849 CCCTTGTATCCAAGCACCCT 59.374 55.000 0.00 0.00 45.57 4.34
359 461 0.623723 TCCCTTGTATCCAAGCACCC 59.376 55.000 0.00 0.00 45.57 4.61
360 462 1.282157 AGTCCCTTGTATCCAAGCACC 59.718 52.381 0.00 0.00 45.57 5.01
361 463 2.789409 AGTCCCTTGTATCCAAGCAC 57.211 50.000 0.00 0.00 45.57 4.40
362 464 5.450818 AAATAGTCCCTTGTATCCAAGCA 57.549 39.130 0.00 0.00 45.57 3.91
363 465 6.775594 AAAAATAGTCCCTTGTATCCAAGC 57.224 37.500 0.00 0.00 45.57 4.01
364 466 9.110502 GACTAAAAATAGTCCCTTGTATCCAAG 57.889 37.037 4.96 0.00 40.86 3.61
365 467 7.767198 CGACTAAAAATAGTCCCTTGTATCCAA 59.233 37.037 9.70 0.00 42.52 3.53
366 468 7.124599 TCGACTAAAAATAGTCCCTTGTATCCA 59.875 37.037 9.70 0.00 42.52 3.41
367 469 7.437565 GTCGACTAAAAATAGTCCCTTGTATCC 59.562 40.741 8.70 0.00 42.52 2.59
368 470 8.196103 AGTCGACTAAAAATAGTCCCTTGTATC 58.804 37.037 18.46 0.00 42.52 2.24
369 471 8.075761 AGTCGACTAAAAATAGTCCCTTGTAT 57.924 34.615 18.46 0.00 42.52 2.29
370 472 7.472334 AGTCGACTAAAAATAGTCCCTTGTA 57.528 36.000 18.46 0.00 42.52 2.41
371 473 6.356186 AGTCGACTAAAAATAGTCCCTTGT 57.644 37.500 18.46 0.00 42.52 3.16
372 474 8.767478 TTTAGTCGACTAAAAATAGTCCCTTG 57.233 34.615 36.54 0.00 43.23 3.61
399 501 9.839817 GGAACTTTAGCCTCTAAAAGAGATTAT 57.160 33.333 5.50 0.00 45.07 1.28
400 502 8.822805 TGGAACTTTAGCCTCTAAAAGAGATTA 58.177 33.333 5.50 0.00 45.07 1.75
401 503 7.690256 TGGAACTTTAGCCTCTAAAAGAGATT 58.310 34.615 5.50 0.00 45.07 2.40
402 504 7.259088 TGGAACTTTAGCCTCTAAAAGAGAT 57.741 36.000 5.50 0.00 45.07 2.75
403 505 6.681729 TGGAACTTTAGCCTCTAAAAGAGA 57.318 37.500 5.50 0.00 45.07 3.10
404 506 6.128145 GCTTGGAACTTTAGCCTCTAAAAGAG 60.128 42.308 2.08 0.00 41.96 2.85
405 507 5.705905 GCTTGGAACTTTAGCCTCTAAAAGA 59.294 40.000 2.08 0.00 36.43 2.52
406 508 5.473504 TGCTTGGAACTTTAGCCTCTAAAAG 59.526 40.000 0.00 0.00 38.41 2.27
407 509 5.240844 GTGCTTGGAACTTTAGCCTCTAAAA 59.759 40.000 0.00 0.00 34.03 1.52
408 510 4.760204 GTGCTTGGAACTTTAGCCTCTAAA 59.240 41.667 0.00 0.00 34.03 1.85
409 511 4.324267 GTGCTTGGAACTTTAGCCTCTAA 58.676 43.478 0.00 0.00 34.03 2.10
410 512 3.307480 GGTGCTTGGAACTTTAGCCTCTA 60.307 47.826 0.00 0.00 34.03 2.43
411 513 2.553247 GGTGCTTGGAACTTTAGCCTCT 60.553 50.000 0.00 0.00 34.03 3.69
412 514 1.813178 GGTGCTTGGAACTTTAGCCTC 59.187 52.381 0.00 0.00 34.03 4.70
413 515 1.547901 GGGTGCTTGGAACTTTAGCCT 60.548 52.381 0.00 0.00 34.03 4.58
414 516 0.888619 GGGTGCTTGGAACTTTAGCC 59.111 55.000 0.00 0.00 34.03 3.93
415 517 0.888619 GGGGTGCTTGGAACTTTAGC 59.111 55.000 0.00 0.00 35.50 3.09
416 518 2.162681 CAGGGGTGCTTGGAACTTTAG 58.837 52.381 0.00 0.00 0.00 1.85
417 519 1.777878 TCAGGGGTGCTTGGAACTTTA 59.222 47.619 0.00 0.00 0.00 1.85
418 520 0.555769 TCAGGGGTGCTTGGAACTTT 59.444 50.000 0.00 0.00 0.00 2.66
419 521 0.178990 GTCAGGGGTGCTTGGAACTT 60.179 55.000 0.00 0.00 0.00 2.66
420 522 1.062488 AGTCAGGGGTGCTTGGAACT 61.062 55.000 0.00 0.00 0.00 3.01
421 523 0.690762 TAGTCAGGGGTGCTTGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
422 524 1.440618 TTAGTCAGGGGTGCTTGGAA 58.559 50.000 0.00 0.00 0.00 3.53
423 525 1.351017 CTTTAGTCAGGGGTGCTTGGA 59.649 52.381 0.00 0.00 0.00 3.53
424 526 1.351017 TCTTTAGTCAGGGGTGCTTGG 59.649 52.381 0.00 0.00 0.00 3.61
425 527 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
426 528 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
427 529 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
428 530 1.208293 CCTCTCTTTAGTCAGGGGTGC 59.792 57.143 0.00 0.00 0.00 5.01
429 531 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
430 532 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
431 533 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
432 534 2.962421 CCTAGCCTCTCTTTAGTCAGGG 59.038 54.545 0.00 0.00 0.00 4.45
433 535 3.634910 GTCCTAGCCTCTCTTTAGTCAGG 59.365 52.174 0.00 0.00 0.00 3.86
434 536 4.532834 AGTCCTAGCCTCTCTTTAGTCAG 58.467 47.826 0.00 0.00 0.00 3.51
435 537 4.594675 AGTCCTAGCCTCTCTTTAGTCA 57.405 45.455 0.00 0.00 0.00 3.41
436 538 5.687780 ACTAGTCCTAGCCTCTCTTTAGTC 58.312 45.833 1.22 0.00 36.66 2.59
437 539 5.430745 AGACTAGTCCTAGCCTCTCTTTAGT 59.569 44.000 19.38 0.00 36.66 2.24
438 540 5.937111 AGACTAGTCCTAGCCTCTCTTTAG 58.063 45.833 19.38 0.00 36.66 1.85
439 541 5.979656 AGACTAGTCCTAGCCTCTCTTTA 57.020 43.478 19.38 0.00 36.66 1.85
440 542 4.873724 AGACTAGTCCTAGCCTCTCTTT 57.126 45.455 19.38 0.00 36.66 2.52
441 543 4.228666 TCAAGACTAGTCCTAGCCTCTCTT 59.771 45.833 19.38 0.17 36.66 2.85
442 544 3.783642 TCAAGACTAGTCCTAGCCTCTCT 59.216 47.826 19.38 0.00 36.66 3.10
443 545 4.134563 CTCAAGACTAGTCCTAGCCTCTC 58.865 52.174 19.38 0.00 36.66 3.20
444 546 3.117663 CCTCAAGACTAGTCCTAGCCTCT 60.118 52.174 19.38 0.00 36.66 3.69
445 547 3.219281 CCTCAAGACTAGTCCTAGCCTC 58.781 54.545 19.38 0.00 36.66 4.70
446 548 2.688515 GCCTCAAGACTAGTCCTAGCCT 60.689 54.545 19.38 0.00 36.66 4.58
447 549 1.684450 GCCTCAAGACTAGTCCTAGCC 59.316 57.143 19.38 0.89 36.66 3.93
448 550 2.661718 AGCCTCAAGACTAGTCCTAGC 58.338 52.381 19.38 14.54 36.66 3.42
449 551 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
450 552 7.126733 AGATTTTAGCCTCAAGACTAGTCCTA 58.873 38.462 19.38 9.39 0.00 2.94
451 553 5.961421 AGATTTTAGCCTCAAGACTAGTCCT 59.039 40.000 19.38 10.36 0.00 3.85
452 554 6.228616 AGATTTTAGCCTCAAGACTAGTCC 57.771 41.667 19.38 2.89 0.00 3.85
453 555 8.554835 AAAAGATTTTAGCCTCAAGACTAGTC 57.445 34.615 15.41 15.41 0.00 2.59
454 556 9.660180 CTAAAAGATTTTAGCCTCAAGACTAGT 57.340 33.333 11.10 0.00 41.97 2.57
468 570 8.950007 AGGTTTCCCATGACTAAAAGATTTTA 57.050 30.769 0.00 0.00 0.00 1.52
469 571 7.855784 AGGTTTCCCATGACTAAAAGATTTT 57.144 32.000 0.00 0.00 0.00 1.82
470 572 8.170730 AGTAGGTTTCCCATGACTAAAAGATTT 58.829 33.333 0.00 0.00 0.00 2.17
471 573 7.699878 AGTAGGTTTCCCATGACTAAAAGATT 58.300 34.615 0.00 0.00 0.00 2.40
472 574 7.272144 AGTAGGTTTCCCATGACTAAAAGAT 57.728 36.000 0.00 0.00 0.00 2.40
473 575 6.697641 AGTAGGTTTCCCATGACTAAAAGA 57.302 37.500 0.00 0.00 0.00 2.52
474 576 8.857694 TTTAGTAGGTTTCCCATGACTAAAAG 57.142 34.615 8.74 0.00 38.44 2.27
475 577 9.816787 ATTTTAGTAGGTTTCCCATGACTAAAA 57.183 29.630 19.00 19.00 45.07 1.52
479 581 8.557450 ACATATTTTAGTAGGTTTCCCATGACT 58.443 33.333 0.00 0.00 0.00 3.41
480 582 8.747538 ACATATTTTAGTAGGTTTCCCATGAC 57.252 34.615 0.00 0.00 0.00 3.06
497 599 9.600432 AGGAGAGAGAGAGCTAATACATATTTT 57.400 33.333 0.00 0.00 0.00 1.82
498 600 9.243105 GAGGAGAGAGAGAGCTAATACATATTT 57.757 37.037 0.00 0.00 0.00 1.40
499 601 8.390143 TGAGGAGAGAGAGAGCTAATACATATT 58.610 37.037 0.00 0.00 0.00 1.28
500 602 7.927788 TGAGGAGAGAGAGAGCTAATACATAT 58.072 38.462 0.00 0.00 0.00 1.78
501 603 7.323052 TGAGGAGAGAGAGAGCTAATACATA 57.677 40.000 0.00 0.00 0.00 2.29
502 604 6.199557 TGAGGAGAGAGAGAGCTAATACAT 57.800 41.667 0.00 0.00 0.00 2.29
503 605 5.638530 TGAGGAGAGAGAGAGCTAATACA 57.361 43.478 0.00 0.00 0.00 2.29
504 606 7.524717 AAATGAGGAGAGAGAGAGCTAATAC 57.475 40.000 0.00 0.00 0.00 1.89
505 607 9.821240 ATTAAATGAGGAGAGAGAGAGCTAATA 57.179 33.333 0.00 0.00 0.00 0.98
506 608 8.725606 ATTAAATGAGGAGAGAGAGAGCTAAT 57.274 34.615 0.00 0.00 0.00 1.73
507 609 8.546083 AATTAAATGAGGAGAGAGAGAGCTAA 57.454 34.615 0.00 0.00 0.00 3.09
508 610 7.232534 GGAATTAAATGAGGAGAGAGAGAGCTA 59.767 40.741 0.00 0.00 0.00 3.32
509 611 6.041979 GGAATTAAATGAGGAGAGAGAGAGCT 59.958 42.308 0.00 0.00 0.00 4.09
510 612 6.041979 AGGAATTAAATGAGGAGAGAGAGAGC 59.958 42.308 0.00 0.00 0.00 4.09
511 613 7.506938 AGAGGAATTAAATGAGGAGAGAGAGAG 59.493 40.741 0.00 0.00 0.00 3.20
512 614 7.361438 AGAGGAATTAAATGAGGAGAGAGAGA 58.639 38.462 0.00 0.00 0.00 3.10
513 615 7.255942 GGAGAGGAATTAAATGAGGAGAGAGAG 60.256 44.444 0.00 0.00 0.00 3.20
514 616 6.553100 GGAGAGGAATTAAATGAGGAGAGAGA 59.447 42.308 0.00 0.00 0.00 3.10
515 617 6.554605 AGGAGAGGAATTAAATGAGGAGAGAG 59.445 42.308 0.00 0.00 0.00 3.20
516 618 6.448202 AGGAGAGGAATTAAATGAGGAGAGA 58.552 40.000 0.00 0.00 0.00 3.10
517 619 6.745794 AGGAGAGGAATTAAATGAGGAGAG 57.254 41.667 0.00 0.00 0.00 3.20
518 620 7.846823 ACTAAGGAGAGGAATTAAATGAGGAGA 59.153 37.037 0.00 0.00 0.00 3.71
519 621 8.028652 ACTAAGGAGAGGAATTAAATGAGGAG 57.971 38.462 0.00 0.00 0.00 3.69
520 622 7.996758 ACTAAGGAGAGGAATTAAATGAGGA 57.003 36.000 0.00 0.00 0.00 3.71
521 623 8.490311 AGAACTAAGGAGAGGAATTAAATGAGG 58.510 37.037 0.00 0.00 0.00 3.86
522 624 9.323985 CAGAACTAAGGAGAGGAATTAAATGAG 57.676 37.037 0.00 0.00 0.00 2.90
523 625 8.267894 CCAGAACTAAGGAGAGGAATTAAATGA 58.732 37.037 0.00 0.00 0.00 2.57
524 626 8.267894 TCCAGAACTAAGGAGAGGAATTAAATG 58.732 37.037 0.00 0.00 0.00 2.32
525 627 8.393959 TCCAGAACTAAGGAGAGGAATTAAAT 57.606 34.615 0.00 0.00 0.00 1.40
526 628 7.808279 TCCAGAACTAAGGAGAGGAATTAAA 57.192 36.000 0.00 0.00 0.00 1.52
527 629 7.996758 ATCCAGAACTAAGGAGAGGAATTAA 57.003 36.000 0.00 0.00 37.34 1.40
528 630 7.147479 CCAATCCAGAACTAAGGAGAGGAATTA 60.147 40.741 0.00 0.00 37.34 1.40
529 631 6.353429 CCAATCCAGAACTAAGGAGAGGAATT 60.353 42.308 0.00 0.00 37.34 2.17
530 632 5.131809 CCAATCCAGAACTAAGGAGAGGAAT 59.868 44.000 0.00 0.00 37.34 3.01
531 633 4.471386 CCAATCCAGAACTAAGGAGAGGAA 59.529 45.833 0.00 0.00 37.34 3.36
532 634 4.033709 CCAATCCAGAACTAAGGAGAGGA 58.966 47.826 0.00 0.00 37.34 3.71
533 635 4.033709 TCCAATCCAGAACTAAGGAGAGG 58.966 47.826 0.00 0.00 37.34 3.69
534 636 4.100808 CCTCCAATCCAGAACTAAGGAGAG 59.899 50.000 7.12 0.00 42.87 3.20
535 637 4.033709 CCTCCAATCCAGAACTAAGGAGA 58.966 47.826 7.12 0.00 42.87 3.71
536 638 3.135530 CCCTCCAATCCAGAACTAAGGAG 59.864 52.174 0.00 0.00 40.58 3.69
537 639 3.115390 CCCTCCAATCCAGAACTAAGGA 58.885 50.000 0.00 0.00 38.50 3.36
538 640 2.846827 ACCCTCCAATCCAGAACTAAGG 59.153 50.000 0.00 0.00 0.00 2.69
539 641 4.576330 AACCCTCCAATCCAGAACTAAG 57.424 45.455 0.00 0.00 0.00 2.18
540 642 4.508405 CCAAACCCTCCAATCCAGAACTAA 60.508 45.833 0.00 0.00 0.00 2.24
541 643 3.010138 CCAAACCCTCCAATCCAGAACTA 59.990 47.826 0.00 0.00 0.00 2.24
542 644 2.225117 CCAAACCCTCCAATCCAGAACT 60.225 50.000 0.00 0.00 0.00 3.01
543 645 2.171003 CCAAACCCTCCAATCCAGAAC 58.829 52.381 0.00 0.00 0.00 3.01
544 646 2.041620 CTCCAAACCCTCCAATCCAGAA 59.958 50.000 0.00 0.00 0.00 3.02
545 647 1.635487 CTCCAAACCCTCCAATCCAGA 59.365 52.381 0.00 0.00 0.00 3.86
546 648 1.341383 CCTCCAAACCCTCCAATCCAG 60.341 57.143 0.00 0.00 0.00 3.86
547 649 0.704076 CCTCCAAACCCTCCAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
548 650 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
549 651 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
550 652 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
551 653 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
552 654 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
553 655 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
554 656 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
555 657 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
556 658 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
557 659 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
560 662 9.866655 AGTTATTGAGCATTTATTATCCTCCAA 57.133 29.630 0.00 0.00 0.00 3.53
590 692 9.096823 TGGATCCAAGTACTAAAGAGACTAAAA 57.903 33.333 13.46 0.00 0.00 1.52
591 693 8.660295 TGGATCCAAGTACTAAAGAGACTAAA 57.340 34.615 13.46 0.00 0.00 1.85
592 694 8.660295 TTGGATCCAAGTACTAAAGAGACTAA 57.340 34.615 23.63 0.00 0.00 2.24
593 695 8.294954 CTTGGATCCAAGTACTAAAGAGACTA 57.705 38.462 36.68 8.30 45.91 2.59
594 696 7.176589 CTTGGATCCAAGTACTAAAGAGACT 57.823 40.000 36.68 0.00 45.91 3.24
608 710 0.703488 TCACCCATGCTTGGATCCAA 59.297 50.000 25.53 25.53 46.92 3.53
609 711 0.256752 CTCACCCATGCTTGGATCCA 59.743 55.000 19.85 11.44 46.92 3.41
610 712 0.548031 TCTCACCCATGCTTGGATCC 59.452 55.000 19.85 4.20 46.92 3.36
611 713 1.211457 AGTCTCACCCATGCTTGGATC 59.789 52.381 19.85 3.99 46.92 3.36
612 714 1.293062 AGTCTCACCCATGCTTGGAT 58.707 50.000 19.85 0.00 46.92 3.41
613 715 1.833630 CTAGTCTCACCCATGCTTGGA 59.166 52.381 19.85 0.00 46.92 3.53
614 716 1.745141 GCTAGTCTCACCCATGCTTGG 60.745 57.143 11.68 11.68 43.23 3.61
615 717 1.065926 TGCTAGTCTCACCCATGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
616 718 1.279496 TGCTAGTCTCACCCATGCTT 58.721 50.000 0.00 0.00 0.00 3.91
617 719 1.279496 TTGCTAGTCTCACCCATGCT 58.721 50.000 0.00 0.00 0.00 3.79
618 720 2.113860 TTTGCTAGTCTCACCCATGC 57.886 50.000 0.00 0.00 0.00 4.06
619 721 5.649782 AAAATTTGCTAGTCTCACCCATG 57.350 39.130 0.00 0.00 0.00 3.66
620 722 6.485171 ACTAAAATTTGCTAGTCTCACCCAT 58.515 36.000 0.00 0.00 0.00 4.00
621 723 5.876357 ACTAAAATTTGCTAGTCTCACCCA 58.124 37.500 0.00 0.00 0.00 4.51
622 724 5.354513 GGACTAAAATTTGCTAGTCTCACCC 59.645 44.000 21.23 8.53 42.42 4.61
623 725 5.354513 GGGACTAAAATTTGCTAGTCTCACC 59.645 44.000 21.23 14.27 42.76 4.02
624 726 5.938125 TGGGACTAAAATTTGCTAGTCTCAC 59.062 40.000 21.16 14.98 46.12 3.51
626 728 6.174049 AGTGGGACTAAAATTTGCTAGTCTC 58.826 40.000 21.23 19.50 43.29 3.36
627 729 6.128138 AGTGGGACTAAAATTTGCTAGTCT 57.872 37.500 21.23 6.77 42.42 3.24
628 730 7.104290 AGTAGTGGGACTAAAATTTGCTAGTC 58.896 38.462 16.72 16.72 42.17 2.59
629 731 7.017319 AGTAGTGGGACTAAAATTTGCTAGT 57.983 36.000 2.80 2.80 31.62 2.57
630 732 7.923414 AAGTAGTGGGACTAAAATTTGCTAG 57.077 36.000 0.00 0.00 31.62 3.42
631 733 8.700439 AAAAGTAGTGGGACTAAAATTTGCTA 57.300 30.769 0.00 0.00 31.62 3.49
632 734 7.597288 AAAAGTAGTGGGACTAAAATTTGCT 57.403 32.000 0.00 0.00 31.62 3.91
633 735 8.573885 ACTAAAAGTAGTGGGACTAAAATTTGC 58.426 33.333 0.00 0.00 39.20 3.68
638 740 9.729281 CCATAACTAAAAGTAGTGGGACTAAAA 57.271 33.333 0.00 0.00 39.79 1.52
645 747 6.309389 AGTCCCATAACTAAAAGTAGTGGG 57.691 41.667 17.41 17.41 46.33 4.61
654 756 8.538701 TGGATACGTTTTAGTCCCATAACTAAA 58.461 33.333 0.00 5.39 43.48 1.85
655 757 8.076910 TGGATACGTTTTAGTCCCATAACTAA 57.923 34.615 0.00 0.00 38.58 2.24
656 758 7.658525 TGGATACGTTTTAGTCCCATAACTA 57.341 36.000 0.00 0.00 42.51 2.24
657 759 6.549433 TGGATACGTTTTAGTCCCATAACT 57.451 37.500 0.00 0.00 42.51 2.24
658 760 6.238293 GCTTGGATACGTTTTAGTCCCATAAC 60.238 42.308 0.00 0.00 42.51 1.89
659 761 5.818857 GCTTGGATACGTTTTAGTCCCATAA 59.181 40.000 0.00 0.00 42.51 1.90
660 762 5.104859 TGCTTGGATACGTTTTAGTCCCATA 60.105 40.000 0.00 0.00 42.51 2.74
661 763 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
662 764 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
663 765 3.602483 TGCTTGGATACGTTTTAGTCCC 58.398 45.455 0.00 0.00 42.51 4.46
664 766 5.616488 TTTGCTTGGATACGTTTTAGTCC 57.384 39.130 0.00 0.00 42.51 3.85
665 767 6.665465 ACTTTTGCTTGGATACGTTTTAGTC 58.335 36.000 0.00 0.00 42.51 2.59
666 768 6.628919 ACTTTTGCTTGGATACGTTTTAGT 57.371 33.333 0.00 0.00 42.51 2.24
667 769 7.744715 CACTACTTTTGCTTGGATACGTTTTAG 59.255 37.037 0.00 0.00 42.51 1.85
668 770 7.308109 CCACTACTTTTGCTTGGATACGTTTTA 60.308 37.037 0.00 0.00 42.51 1.52
669 771 6.435428 CACTACTTTTGCTTGGATACGTTTT 58.565 36.000 0.00 0.00 42.51 2.43
670 772 5.048991 CCACTACTTTTGCTTGGATACGTTT 60.049 40.000 0.00 0.00 42.51 3.60
671 773 4.454504 CCACTACTTTTGCTTGGATACGTT 59.545 41.667 0.00 0.00 42.51 3.99
672 774 4.000988 CCACTACTTTTGCTTGGATACGT 58.999 43.478 0.00 0.00 42.51 3.57
673 775 3.374058 CCCACTACTTTTGCTTGGATACG 59.626 47.826 0.00 0.00 42.51 3.06
674 776 4.395231 GTCCCACTACTTTTGCTTGGATAC 59.605 45.833 0.00 0.00 0.00 2.24
675 777 4.288626 AGTCCCACTACTTTTGCTTGGATA 59.711 41.667 0.00 0.00 0.00 2.59
676 778 3.074538 AGTCCCACTACTTTTGCTTGGAT 59.925 43.478 0.00 0.00 0.00 3.41
677 779 2.441750 AGTCCCACTACTTTTGCTTGGA 59.558 45.455 0.00 0.00 0.00 3.53
678 780 2.863809 AGTCCCACTACTTTTGCTTGG 58.136 47.619 0.00 0.00 0.00 3.61
679 781 6.206498 GTTTTAGTCCCACTACTTTTGCTTG 58.794 40.000 0.00 0.00 28.93 4.01
680 782 5.008316 CGTTTTAGTCCCACTACTTTTGCTT 59.992 40.000 0.00 0.00 28.93 3.91
681 783 4.514066 CGTTTTAGTCCCACTACTTTTGCT 59.486 41.667 0.00 0.00 28.93 3.91
682 784 4.274214 ACGTTTTAGTCCCACTACTTTTGC 59.726 41.667 0.00 0.00 28.93 3.68
683 785 5.996669 ACGTTTTAGTCCCACTACTTTTG 57.003 39.130 0.00 0.00 28.93 2.44
684 786 6.875726 GGATACGTTTTAGTCCCACTACTTTT 59.124 38.462 0.00 0.00 28.93 2.27
685 787 6.014327 TGGATACGTTTTAGTCCCACTACTTT 60.014 38.462 0.00 0.00 42.51 2.66
686 788 5.481473 TGGATACGTTTTAGTCCCACTACTT 59.519 40.000 0.00 0.00 42.51 2.24
687 789 5.018809 TGGATACGTTTTAGTCCCACTACT 58.981 41.667 0.00 0.00 42.51 2.57
688 790 5.329035 TGGATACGTTTTAGTCCCACTAC 57.671 43.478 0.00 0.00 42.51 2.73
689 791 5.625197 GCTTGGATACGTTTTAGTCCCACTA 60.625 44.000 0.00 0.00 42.51 2.74
690 792 4.828829 CTTGGATACGTTTTAGTCCCACT 58.171 43.478 0.00 0.00 42.51 4.00
691 793 3.373130 GCTTGGATACGTTTTAGTCCCAC 59.627 47.826 0.00 0.00 42.51 4.61
692 794 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
693 795 3.602483 TGCTTGGATACGTTTTAGTCCC 58.398 45.455 0.00 0.00 42.51 4.46
694 796 6.047231 AGTATGCTTGGATACGTTTTAGTCC 58.953 40.000 0.00 0.00 42.51 3.85
695 797 6.979238 AGAGTATGCTTGGATACGTTTTAGTC 59.021 38.462 0.00 0.00 42.51 2.59
696 798 6.875076 AGAGTATGCTTGGATACGTTTTAGT 58.125 36.000 0.00 0.00 42.51 2.24
697 799 8.867112 TTAGAGTATGCTTGGATACGTTTTAG 57.133 34.615 0.00 0.00 42.51 1.85
698 800 9.826574 ATTTAGAGTATGCTTGGATACGTTTTA 57.173 29.630 0.00 0.00 42.51 1.52
699 801 8.732746 ATTTAGAGTATGCTTGGATACGTTTT 57.267 30.769 0.00 0.00 42.51 2.43
700 802 9.477484 CTATTTAGAGTATGCTTGGATACGTTT 57.523 33.333 0.00 0.00 42.51 3.60
701 803 8.088981 CCTATTTAGAGTATGCTTGGATACGTT 58.911 37.037 0.00 2.96 42.51 3.99
702 804 7.603651 CCTATTTAGAGTATGCTTGGATACGT 58.396 38.462 0.00 0.00 42.51 3.57
703 805 6.531948 GCCTATTTAGAGTATGCTTGGATACG 59.468 42.308 6.63 0.00 42.51 3.06
704 806 7.386851 TGCCTATTTAGAGTATGCTTGGATAC 58.613 38.462 4.45 4.45 0.00 2.24
705 807 7.553504 TGCCTATTTAGAGTATGCTTGGATA 57.446 36.000 0.00 0.00 0.00 2.59
706 808 6.439636 TGCCTATTTAGAGTATGCTTGGAT 57.560 37.500 0.00 0.00 0.00 3.41
707 809 5.887214 TGCCTATTTAGAGTATGCTTGGA 57.113 39.130 0.00 0.00 0.00 3.53
708 810 6.058183 ACTTGCCTATTTAGAGTATGCTTGG 58.942 40.000 0.00 0.00 0.00 3.61
709 811 7.095439 GCTACTTGCCTATTTAGAGTATGCTTG 60.095 40.741 0.00 0.00 35.15 4.01
710 812 6.931840 GCTACTTGCCTATTTAGAGTATGCTT 59.068 38.462 0.00 0.00 35.15 3.91
711 813 6.459923 GCTACTTGCCTATTTAGAGTATGCT 58.540 40.000 0.00 0.00 35.15 3.79
712 814 6.713792 GCTACTTGCCTATTTAGAGTATGC 57.286 41.667 0.00 0.00 35.15 3.14
739 841 7.523415 TGTCCTTTCAAAATAGTTTCCTACCT 58.477 34.615 0.00 0.00 0.00 3.08
740 842 7.094334 CCTGTCCTTTCAAAATAGTTTCCTACC 60.094 40.741 0.00 0.00 0.00 3.18
742 844 6.946009 CCCTGTCCTTTCAAAATAGTTTCCTA 59.054 38.462 0.00 0.00 0.00 2.94
781 884 4.771745 GGGGGAGGGGGTGGCTAA 62.772 72.222 0.00 0.00 0.00 3.09
823 927 1.850755 GGGTTTGGGACTGGGGAGA 60.851 63.158 0.00 0.00 0.00 3.71
828 932 2.440599 CCTGGGGTTTGGGACTGG 59.559 66.667 0.00 0.00 0.00 4.00
847 951 2.125753 GGCACGGCAGACAGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
866 970 4.589675 GGGTTTGGTGTCCCGGCA 62.590 66.667 0.00 0.00 33.97 5.69
870 974 2.671963 GCGAGGGTTTGGTGTCCC 60.672 66.667 0.00 0.00 43.71 4.46
871 975 1.671379 GAGCGAGGGTTTGGTGTCC 60.671 63.158 0.00 0.00 0.00 4.02
926 1031 1.342672 ACCTCGGGCGGGATTTGTAT 61.343 55.000 0.00 0.00 0.00 2.29
1227 1366 0.820074 CTCAGGCTCGGATCCGTACT 60.820 60.000 32.15 24.03 40.74 2.73
1256 1397 4.098654 TCATCCCACAACAACGAACAAAAT 59.901 37.500 0.00 0.00 0.00 1.82
1264 1405 2.616376 TCAGTTTCATCCCACAACAACG 59.384 45.455 0.00 0.00 0.00 4.10
1282 1427 3.308530 GAGAAAACGGCAACCATTTCAG 58.691 45.455 11.98 0.00 33.90 3.02
1283 1428 2.287308 CGAGAAAACGGCAACCATTTCA 60.287 45.455 11.98 0.00 33.90 2.69
1285 1430 1.679153 ACGAGAAAACGGCAACCATTT 59.321 42.857 0.00 0.00 37.61 2.32
1286 1431 1.265905 GACGAGAAAACGGCAACCATT 59.734 47.619 0.00 0.00 41.34 3.16
1287 1432 0.872388 GACGAGAAAACGGCAACCAT 59.128 50.000 0.00 0.00 41.34 3.55
1288 1433 0.179067 AGACGAGAAAACGGCAACCA 60.179 50.000 0.00 0.00 44.44 3.67
1289 1434 0.234884 CAGACGAGAAAACGGCAACC 59.765 55.000 0.00 0.00 44.44 3.77
1290 1435 0.234884 CCAGACGAGAAAACGGCAAC 59.765 55.000 0.00 0.00 44.44 4.17
1291 1436 0.882927 CCCAGACGAGAAAACGGCAA 60.883 55.000 0.00 0.00 44.44 4.52
1292 1437 1.301401 CCCAGACGAGAAAACGGCA 60.301 57.895 0.00 0.00 44.44 5.69
1293 1438 2.033194 CCCCAGACGAGAAAACGGC 61.033 63.158 0.00 0.00 42.10 5.68
1294 1439 0.250166 AACCCCAGACGAGAAAACGG 60.250 55.000 0.00 0.00 37.61 4.44
1295 1440 0.865769 CAACCCCAGACGAGAAAACG 59.134 55.000 0.00 0.00 39.31 3.60
1296 1441 2.143925 CTCAACCCCAGACGAGAAAAC 58.856 52.381 0.00 0.00 0.00 2.43
1297 1442 2.043992 TCTCAACCCCAGACGAGAAAA 58.956 47.619 0.00 0.00 31.73 2.29
1298 1443 1.712056 TCTCAACCCCAGACGAGAAA 58.288 50.000 0.00 0.00 31.73 2.52
1299 1444 1.825474 GATCTCAACCCCAGACGAGAA 59.175 52.381 0.00 0.00 37.99 2.87
1300 1445 1.475403 GATCTCAACCCCAGACGAGA 58.525 55.000 0.00 0.00 38.78 4.04
1301 1446 0.101399 CGATCTCAACCCCAGACGAG 59.899 60.000 0.00 0.00 0.00 4.18
1302 1447 0.611062 ACGATCTCAACCCCAGACGA 60.611 55.000 0.00 0.00 0.00 4.20
1413 1559 1.535437 CCGTCCGTAGAACCACATAGC 60.535 57.143 0.00 0.00 0.00 2.97
1415 1561 2.127271 TCCGTCCGTAGAACCACATA 57.873 50.000 0.00 0.00 0.00 2.29
1419 1565 1.475280 CTTGATCCGTCCGTAGAACCA 59.525 52.381 0.00 0.00 0.00 3.67
1441 1587 1.607467 CCCAGGAAAAGGGCAGTGG 60.607 63.158 0.00 0.00 39.96 4.00
1444 1590 2.355010 CTATCCCAGGAAAAGGGCAG 57.645 55.000 0.00 0.00 46.36 4.85
1457 1603 6.607004 TCGAGAATTTTCCTATCCTATCCC 57.393 41.667 0.00 0.00 0.00 3.85
1458 1604 6.536941 GCATCGAGAATTTTCCTATCCTATCC 59.463 42.308 0.00 0.00 0.00 2.59
1459 1605 6.254589 CGCATCGAGAATTTTCCTATCCTATC 59.745 42.308 0.00 0.00 0.00 2.08
1460 1606 6.102663 CGCATCGAGAATTTTCCTATCCTAT 58.897 40.000 0.00 0.00 0.00 2.57
1461 1607 5.470368 CGCATCGAGAATTTTCCTATCCTA 58.530 41.667 0.00 0.00 0.00 2.94
1462 1608 4.310769 CGCATCGAGAATTTTCCTATCCT 58.689 43.478 0.00 0.00 0.00 3.24
1538 1686 2.036992 GCATGTCCTCTGATACCAGGAG 59.963 54.545 0.00 0.00 39.61 3.69
1540 1688 1.269988 CGCATGTCCTCTGATACCAGG 60.270 57.143 0.00 0.00 40.76 4.45
1560 1708 2.202479 GAGGCAACAAATCGCGGC 60.202 61.111 6.13 0.00 41.41 6.53
1561 1709 0.523968 CATGAGGCAACAAATCGCGG 60.524 55.000 6.13 0.00 41.41 6.46
1562 1710 0.168788 ACATGAGGCAACAAATCGCG 59.831 50.000 0.00 0.00 41.41 5.87
1570 1718 2.684881 CTGATTGGGTACATGAGGCAAC 59.315 50.000 0.00 0.00 0.00 4.17
1592 1740 2.360844 TCAAGAGAACAAAACACGCCA 58.639 42.857 0.00 0.00 0.00 5.69
1593 1741 3.626028 ATCAAGAGAACAAAACACGCC 57.374 42.857 0.00 0.00 0.00 5.68
1613 1761 9.747898 AATCAACCCAGAAACATTGTATTACTA 57.252 29.630 0.00 0.00 0.00 1.82
1615 1763 9.705290 AAAATCAACCCAGAAACATTGTATTAC 57.295 29.630 0.00 0.00 0.00 1.89
1616 1764 9.703892 CAAAATCAACCCAGAAACATTGTATTA 57.296 29.630 0.00 0.00 0.00 0.98
1617 1765 7.661027 CCAAAATCAACCCAGAAACATTGTATT 59.339 33.333 0.00 0.00 0.00 1.89
1618 1766 7.160726 CCAAAATCAACCCAGAAACATTGTAT 58.839 34.615 0.00 0.00 0.00 2.29
1713 1861 7.766738 TCGCAGAGTATGTATGGAAAACAATAA 59.233 33.333 0.00 0.00 0.00 1.40
1764 1919 3.870419 GTGCACAAAAGAGGCATCAAAAA 59.130 39.130 13.17 0.00 40.05 1.94
1784 1939 3.058293 TGAAAATAGCAGCCAGAAACGTG 60.058 43.478 0.00 0.00 0.00 4.49
1785 1940 3.058224 GTGAAAATAGCAGCCAGAAACGT 60.058 43.478 0.00 0.00 0.00 3.99
1922 2078 7.253905 ACTTTATGCTAAACTGTTAGAGGGA 57.746 36.000 0.00 0.00 39.36 4.20
1928 2084 9.431887 CCAGAGTAACTTTATGCTAAACTGTTA 57.568 33.333 0.00 0.00 0.00 2.41
2007 2163 5.922544 GCATCAGTAAGCACAGTTTGAATTT 59.077 36.000 0.00 0.00 0.00 1.82
2113 2269 0.843309 TCCCTTCTTCACAGGTGCAA 59.157 50.000 0.00 0.00 0.00 4.08
2160 2316 2.034879 CAGCCGAGCCACGATTTGT 61.035 57.895 2.48 0.00 45.77 2.83
2342 2498 4.748892 ACATAGTCTCGTCAGTGGAAATG 58.251 43.478 0.00 0.00 0.00 2.32
2393 2549 6.980978 AGTCACCATTATCAATGTACTCGAAG 59.019 38.462 0.00 0.00 37.18 3.79
2450 2606 3.316283 TGAAATGCGCAGGTTTTCATTC 58.684 40.909 25.86 15.28 35.16 2.67
2480 2636 4.652822 AGGAAAACATACCTTCCACAGTC 58.347 43.478 3.83 0.00 43.12 3.51
2493 2649 7.111247 TGTCAATGTTCAGAAAGGAAAACAT 57.889 32.000 0.00 0.00 42.50 2.71
2524 2680 0.753262 ATAAGAGCACACGCCCTAGG 59.247 55.000 0.06 0.06 39.83 3.02
2582 2749 3.064900 AGCTCCTGCGAAAGAAGAAAT 57.935 42.857 0.00 0.00 40.08 2.17
2626 2793 4.927978 AACGTTGTCAATTTCCATTGGA 57.072 36.364 0.00 0.00 40.41 3.53
2656 2823 6.272822 TGTGGATCCTCATAGTTATCATCG 57.727 41.667 14.23 0.00 0.00 3.84
2717 2884 2.183811 CACCTCAGCCTCTCGCAG 59.816 66.667 0.00 0.00 41.38 5.18
2760 2927 1.471684 CATTTGAAGGAGCAGGCTGAC 59.528 52.381 20.86 11.09 0.00 3.51
2847 3014 3.648339 AACATGCGCAAACTGAAGAAT 57.352 38.095 17.11 0.00 0.00 2.40
2914 3081 7.423844 TGACAATAAGGTCTATGATGACACT 57.576 36.000 0.00 0.00 38.61 3.55
2955 3122 4.700213 TGGCATTTGCTACTACTTCTTTCC 59.300 41.667 2.12 0.00 41.70 3.13
2963 3130 4.376340 AGCATTTGGCATTTGCTACTAC 57.624 40.909 19.45 0.00 44.51 2.73
2998 3165 9.376075 CTGTAGTGTCTATGATTGATGTTTTCT 57.624 33.333 0.00 0.00 0.00 2.52
3094 3262 2.740447 GTGTTCCGAAATGTACTGACCC 59.260 50.000 0.00 0.00 0.00 4.46
3095 3263 3.660865 AGTGTTCCGAAATGTACTGACC 58.339 45.455 0.00 0.00 0.00 4.02
3284 3460 9.695526 TCAAGTTCACATCCATTTTTATTGAAG 57.304 29.630 0.00 0.00 0.00 3.02
3356 3532 9.214953 CGTCTGTTGAGAAATAAATAAAGCATC 57.785 33.333 0.00 0.00 0.00 3.91
3562 3738 3.535561 ACGATATTCTTCAGCAACCTGG 58.464 45.455 0.00 0.00 39.61 4.45
3643 3819 1.382522 GCCTTTGGCGATTGATCTCA 58.617 50.000 0.00 0.00 39.62 3.27
4082 4265 7.514127 TCCTATGGTAAGCAAGGAATAGAGAAT 59.486 37.037 0.00 0.00 35.20 2.40
4092 4275 5.440610 ACAAATCTCCTATGGTAAGCAAGG 58.559 41.667 0.00 0.00 0.00 3.61
4145 4328 2.553086 CAGAAGCTGATCAAGAGAGCC 58.447 52.381 0.00 0.00 32.44 4.70
4318 4517 5.242069 TGAACTTCGACAAGAAAATTGCA 57.758 34.783 0.00 0.00 38.57 4.08
4387 4586 5.232463 AGCAACATTTTGATACTGCAAAGG 58.768 37.500 0.00 0.00 38.80 3.11
4435 4634 0.961019 TGCTTCCAGTTCACAATGGC 59.039 50.000 0.00 0.00 36.47 4.40
4700 4918 1.087501 GAATTCTGCGGGGACTGAAC 58.912 55.000 0.00 0.00 36.31 3.18
4707 4925 3.813596 CGGAAGAATTCTGCGGGG 58.186 61.111 9.17 0.00 45.65 5.73
4744 4962 3.073274 ACTACTCCTGGGCATTTTCAC 57.927 47.619 0.00 0.00 0.00 3.18
4746 4964 2.164422 GCAACTACTCCTGGGCATTTTC 59.836 50.000 0.00 0.00 0.00 2.29
4820 5038 0.741326 TACTGTCTGCGAGGATCAGC 59.259 55.000 0.00 0.00 35.70 4.26
4832 5050 3.619900 TGGGATGGAGCTATACTGTCT 57.380 47.619 0.00 0.00 0.00 3.41
4834 5052 3.643792 GTCTTGGGATGGAGCTATACTGT 59.356 47.826 0.00 0.00 0.00 3.55
4871 5089 1.644786 CCGATCACCCGAAACAAGCC 61.645 60.000 0.00 0.00 0.00 4.35
4956 5182 3.326297 AGAGGAAGGACAAGTCAAGGAAG 59.674 47.826 2.29 0.00 0.00 3.46
5062 5307 4.763793 ACAAGATGTTTATGCTTCTGCTGT 59.236 37.500 0.00 0.00 40.48 4.40
5159 5406 4.218417 AGACTAAACAATGCCACCACATTC 59.782 41.667 0.00 0.00 38.19 2.67
5160 5407 4.022068 CAGACTAAACAATGCCACCACATT 60.022 41.667 0.00 0.00 40.90 2.71
5161 5408 3.507233 CAGACTAAACAATGCCACCACAT 59.493 43.478 0.00 0.00 0.00 3.21
5164 5411 3.500448 TCAGACTAAACAATGCCACCA 57.500 42.857 0.00 0.00 0.00 4.17
5251 7228 8.195617 ACGAAATGTTTTGTCATTTGTTCAAT 57.804 26.923 8.96 0.00 44.62 2.57
5252 7229 7.588143 ACGAAATGTTTTGTCATTTGTTCAA 57.412 28.000 8.96 0.00 44.62 2.69
5346 7335 2.310538 TCTGCTATTCTGCTGATCCGA 58.689 47.619 0.00 0.00 36.30 4.55
5351 7340 2.158856 CCACCATCTGCTATTCTGCTGA 60.159 50.000 0.00 0.00 43.15 4.26
5421 7410 8.366401 ACATCTCCATGACATATTCAGAACTAG 58.634 37.037 0.00 0.00 37.77 2.57
5424 7413 7.798596 AACATCTCCATGACATATTCAGAAC 57.201 36.000 0.00 0.00 37.77 3.01
5428 7417 7.567458 TGAGAAACATCTCCATGACATATTCA 58.433 34.615 0.00 0.00 35.82 2.57
5460 7449 5.576774 GCCCTACAATTTTTCTATTGCACAC 59.423 40.000 0.00 0.00 38.74 3.82
5475 7464 3.452627 CAGTACTCTGGAAGCCCTACAAT 59.547 47.826 0.00 0.00 37.97 2.71
5547 7536 2.598565 ACAGTCTTCAGCCACTAGACA 58.401 47.619 0.00 0.00 40.53 3.41
5566 7555 4.168760 GCCAAATGCTGAATGTCACTTAC 58.831 43.478 0.00 0.00 36.87 2.34
5647 7637 7.686438 TGTATCATATGTTGCAGACTTGTTT 57.314 32.000 1.90 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.