Multiple sequence alignment - TraesCS3B01G182900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G182900 chr3B 100.000 4773 0 0 1 4773 193629887 193625115 0.000000e+00 8815.0
1 TraesCS3B01G182900 chr3B 83.030 165 27 1 345 508 357774361 357774525 1.070000e-31 148.0
2 TraesCS3B01G182900 chr3B 80.625 160 30 1 345 503 547330061 547330220 6.490000e-24 122.0
3 TraesCS3B01G182900 chr3D 90.828 2573 129 33 680 3172 135642323 135639778 0.000000e+00 3345.0
4 TraesCS3B01G182900 chr3D 96.182 681 26 0 1070 1750 427301846 427302526 0.000000e+00 1114.0
5 TraesCS3B01G182900 chr3D 86.677 653 64 11 4 634 135642974 135642323 0.000000e+00 702.0
6 TraesCS3B01G182900 chr3D 90.930 441 19 3 3931 4365 135639055 135638630 1.490000e-159 573.0
7 TraesCS3B01G182900 chr3D 85.745 463 34 22 3207 3667 135639779 135639347 1.210000e-125 460.0
8 TraesCS3B01G182900 chr3D 90.763 249 21 2 3664 3912 135639287 135639041 9.900000e-87 331.0
9 TraesCS3B01G182900 chr3D 97.561 41 1 0 4567 4607 135638287 135638247 2.380000e-08 71.3
10 TraesCS3B01G182900 chr3A 88.906 1307 99 23 2 1275 151010893 151009600 0.000000e+00 1568.0
11 TraesCS3B01G182900 chr3A 93.573 389 20 2 3982 4365 151003391 151003003 4.140000e-160 575.0
12 TraesCS3B01G182900 chr3A 92.308 208 16 0 4398 4605 151003005 151002798 3.610000e-76 296.0
13 TraesCS3B01G182900 chr3A 82.178 101 18 0 1402 1502 164910670 164910770 2.370000e-13 87.9
14 TraesCS3B01G182900 chr2D 95.560 473 20 1 1073 1545 551836678 551836207 0.000000e+00 756.0
15 TraesCS3B01G182900 chrUn 98.684 152 2 0 4622 4773 77122013 77121862 2.190000e-68 270.0
16 TraesCS3B01G182900 chr7B 98.684 152 2 0 4622 4773 548369262 548369111 2.190000e-68 270.0
17 TraesCS3B01G182900 chr7A 98.684 152 2 0 4622 4773 74675101 74675252 2.190000e-68 270.0
18 TraesCS3B01G182900 chr7A 80.620 258 36 9 326 578 56259942 56260190 2.270000e-43 187.0
19 TraesCS3B01G182900 chr6B 98.684 152 2 0 4622 4773 98427377 98427528 2.190000e-68 270.0
20 TraesCS3B01G182900 chr6B 98.684 152 2 0 4622 4773 213482708 213482859 2.190000e-68 270.0
21 TraesCS3B01G182900 chr6B 98.684 152 2 0 4622 4773 714583240 714583391 2.190000e-68 270.0
22 TraesCS3B01G182900 chr6B 82.738 168 28 1 345 511 609926519 609926352 1.070000e-31 148.0
23 TraesCS3B01G182900 chr6A 98.684 152 2 0 4622 4773 51899456 51899305 2.190000e-68 270.0
24 TraesCS3B01G182900 chr5A 98.684 152 2 0 4622 4773 41084532 41084683 2.190000e-68 270.0
25 TraesCS3B01G182900 chr1A 98.684 152 2 0 4622 4773 61348298 61348147 2.190000e-68 270.0
26 TraesCS3B01G182900 chr2B 83.051 177 28 2 345 520 25261286 25261111 4.940000e-35 159.0
27 TraesCS3B01G182900 chr2B 83.929 168 26 1 345 511 142914003 142913836 4.940000e-35 159.0
28 TraesCS3B01G182900 chr4A 82.424 165 28 1 345 508 699942859 699943023 4.980000e-30 143.0
29 TraesCS3B01G182900 chr7D 77.604 192 28 10 326 511 53571406 53571588 8.450000e-18 102.0
30 TraesCS3B01G182900 chr5D 83.168 101 15 2 1956 2055 390512395 390512494 1.830000e-14 91.6
31 TraesCS3B01G182900 chr6D 86.154 65 8 1 397 461 439112026 439111963 8.570000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G182900 chr3B 193625115 193629887 4772 True 8815.000000 8815 100.000000 1 4773 1 chr3B.!!$R1 4772
1 TraesCS3B01G182900 chr3D 427301846 427302526 680 False 1114.000000 1114 96.182000 1070 1750 1 chr3D.!!$F1 680
2 TraesCS3B01G182900 chr3D 135638247 135642974 4727 True 913.716667 3345 90.417333 4 4607 6 chr3D.!!$R1 4603
3 TraesCS3B01G182900 chr3A 151009600 151010893 1293 True 1568.000000 1568 88.906000 2 1275 1 chr3A.!!$R1 1273
4 TraesCS3B01G182900 chr3A 151002798 151003391 593 True 435.500000 575 92.940500 3982 4605 2 chr3A.!!$R2 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 479 0.111639 TAAGCCCAAAGCCCGAAAGT 59.888 50.0 0.00 0.0 45.47 2.66 F
1947 2016 0.108585 TGGAGCACAGGGTGAACTTC 59.891 55.0 0.00 0.0 35.23 3.01 F
2718 2814 0.037697 TTTGGACCGATCGTCACCAG 60.038 55.0 15.09 0.0 43.95 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 2131 0.693049 AGGTTGATGCCGAAGAGGTT 59.307 50.0 0.0 0.0 43.70 3.50 R
2977 3089 0.179032 CAGTACCACTGCCACCAACA 60.179 55.0 0.0 0.0 39.62 3.33 R
4396 4587 0.036765 ACCGCACGATCAAAGGCTAA 60.037 50.0 0.0 0.0 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 6.878317 TGATATAACTTGTCCTGTTCAGAGG 58.122 40.000 1.00 0.00 0.00 3.69
75 77 8.550710 AGCTATTCAGAAATATCATCAGCTTC 57.449 34.615 0.00 0.00 0.00 3.86
114 116 0.603975 GCGAGAGGCCAATATGGTCC 60.604 60.000 5.01 0.00 45.08 4.46
115 117 0.758734 CGAGAGGCCAATATGGTCCA 59.241 55.000 5.01 0.00 45.08 4.02
127 129 5.397899 CCAATATGGTCCATCACCTAAGTGT 60.398 44.000 7.92 0.00 46.98 3.55
135 137 4.346709 TCCATCACCTAAGTGTCAAACAGA 59.653 41.667 0.00 0.00 44.83 3.41
210 212 1.724429 TGGTTGTATTACCCGCGAAC 58.276 50.000 8.23 0.17 37.39 3.95
283 287 3.433274 AGGCATTGCGATGTATATTGACG 59.567 43.478 15.45 0.00 35.63 4.35
305 309 1.007964 CAAACCGCGCATTCCACAA 60.008 52.632 8.75 0.00 0.00 3.33
306 310 0.388391 CAAACCGCGCATTCCACAAT 60.388 50.000 8.75 0.00 0.00 2.71
309 315 1.240641 ACCGCGCATTCCACAATCAA 61.241 50.000 8.75 0.00 0.00 2.57
334 340 1.068055 GTTGCTCGACTCTAAACCCGA 60.068 52.381 0.00 0.00 0.00 5.14
368 375 3.339547 GCTTGTAAAGGCCTGACCA 57.660 52.632 5.69 0.00 46.35 4.02
382 389 3.349927 CCTGACCATCATTTCTCAAGCA 58.650 45.455 0.00 0.00 0.00 3.91
383 390 3.952323 CCTGACCATCATTTCTCAAGCAT 59.048 43.478 0.00 0.00 0.00 3.79
414 432 4.441634 GCTCAAAGCCCGAAATACTCTCTA 60.442 45.833 0.00 0.00 34.48 2.43
428 446 8.650143 AAATACTCTCTATTTTCAAGCCCAAA 57.350 30.769 0.00 0.00 0.00 3.28
429 447 8.650143 AATACTCTCTATTTTCAAGCCCAAAA 57.350 30.769 0.00 0.00 0.00 2.44
430 448 6.976934 ACTCTCTATTTTCAAGCCCAAAAA 57.023 33.333 0.00 0.00 0.00 1.94
434 452 6.549364 TCTCTATTTTCAAGCCCAAAAACAGA 59.451 34.615 0.00 0.00 0.00 3.41
435 453 7.233348 TCTCTATTTTCAAGCCCAAAAACAGAT 59.767 33.333 0.00 0.00 0.00 2.90
461 479 0.111639 TAAGCCCAAAGCCCGAAAGT 59.888 50.000 0.00 0.00 45.47 2.66
462 480 1.463553 AAGCCCAAAGCCCGAAAGTG 61.464 55.000 0.00 0.00 45.47 3.16
468 486 2.983725 AAAGCCCGAAAGTGCAGCCT 62.984 55.000 0.00 0.00 0.00 4.58
516 536 1.889829 CAAGCCCGACCCAAAATACAA 59.110 47.619 0.00 0.00 0.00 2.41
518 538 2.599677 AGCCCGACCCAAAATACAAAA 58.400 42.857 0.00 0.00 0.00 2.44
519 539 2.560981 AGCCCGACCCAAAATACAAAAG 59.439 45.455 0.00 0.00 0.00 2.27
522 544 4.805219 CCCGACCCAAAATACAAAAGAAG 58.195 43.478 0.00 0.00 0.00 2.85
571 593 1.744014 CAGGCTGCAAAACAAGGCT 59.256 52.632 0.00 0.00 34.28 4.58
613 637 0.896940 TGCCCGGTTTACTCGACTCT 60.897 55.000 0.00 0.00 0.00 3.24
635 659 2.955881 GCGCACCTTGGGTAGACCT 61.956 63.158 0.30 0.00 41.11 3.85
667 692 5.091261 ACAAAGATACTCCTTGCGAGATT 57.909 39.130 1.22 0.00 41.63 2.40
757 795 2.480416 CCGTAGCTACTCTGCTTTCAGG 60.480 54.545 21.20 7.43 43.74 3.86
918 958 4.141251 TCCCTCTGGTTAAATTGATAGCCC 60.141 45.833 0.00 0.00 0.00 5.19
991 1060 4.974721 CACCCAAGCCAAGCCGGT 62.975 66.667 1.90 0.00 36.97 5.28
1009 1078 4.907034 CGGTCGAGATGGCGTCGG 62.907 72.222 0.13 0.00 38.02 4.79
1782 1851 4.020617 TTCCGCCTGGTGGAGCTG 62.021 66.667 26.64 1.62 43.44 4.24
1947 2016 0.108585 TGGAGCACAGGGTGAACTTC 59.891 55.000 0.00 0.00 35.23 3.01
1953 2022 1.079127 CAGGGTGAACTTCGCGGAT 60.079 57.895 6.13 0.00 0.00 4.18
1967 2036 2.796193 CGGATGTCTGGGCGGATGA 61.796 63.158 0.00 0.00 0.00 2.92
1987 2056 4.796495 GCTACAAGGCCACCGGGG 62.796 72.222 6.32 0.00 40.85 5.73
2062 2131 2.038557 GTGTACTTCTTCCTGGGCAAGA 59.961 50.000 0.00 0.00 0.00 3.02
2070 2139 0.693049 TCCTGGGCAAGAACCTCTTC 59.307 55.000 0.00 0.00 33.78 2.87
2074 2143 1.302511 GGCAAGAACCTCTTCGGCA 60.303 57.895 0.00 0.00 33.78 5.69
2158 2227 3.474570 ATGTCTCCTCCCGCTGCC 61.475 66.667 0.00 0.00 0.00 4.85
2164 2233 3.710722 CCTCCCGCTGCCTTCACT 61.711 66.667 0.00 0.00 0.00 3.41
2216 2285 7.123997 TGCAGGTAATCAACAATAATCCACATT 59.876 33.333 0.00 0.00 0.00 2.71
2254 2323 4.642445 TGCTTTGATGCTGTTGATATGG 57.358 40.909 0.00 0.00 0.00 2.74
2255 2324 4.018490 TGCTTTGATGCTGTTGATATGGT 58.982 39.130 0.00 0.00 0.00 3.55
2256 2325 4.463539 TGCTTTGATGCTGTTGATATGGTT 59.536 37.500 0.00 0.00 0.00 3.67
2257 2326 5.039333 GCTTTGATGCTGTTGATATGGTTC 58.961 41.667 0.00 0.00 0.00 3.62
2258 2327 5.393352 GCTTTGATGCTGTTGATATGGTTCA 60.393 40.000 0.00 0.00 0.00 3.18
2259 2328 5.823209 TTGATGCTGTTGATATGGTTCAG 57.177 39.130 0.00 0.00 0.00 3.02
2261 2330 5.499313 TGATGCTGTTGATATGGTTCAGAA 58.501 37.500 0.00 0.00 0.00 3.02
2262 2331 5.355071 TGATGCTGTTGATATGGTTCAGAAC 59.645 40.000 4.52 4.52 0.00 3.01
2303 2375 1.065102 TCACGCTGATACGCCTTCTAC 59.935 52.381 0.00 0.00 36.19 2.59
2308 2380 2.799917 GCTGATACGCCTTCTACTGTGG 60.800 54.545 0.00 0.00 0.00 4.17
2314 2386 1.471676 CGCCTTCTACTGTGGTGATCC 60.472 57.143 0.00 0.00 33.56 3.36
2324 2396 1.303309 GTGGTGATCCTGTATGCTGC 58.697 55.000 0.00 0.00 34.23 5.25
2335 2407 3.059393 CCTGTATGCTGCACGTGATTATG 60.059 47.826 22.23 4.57 0.00 1.90
2365 2439 4.650972 ATGTGGTTTTGGTAGCTAGGAA 57.349 40.909 0.00 0.00 0.00 3.36
2390 2464 8.676397 ACCTATAATGATCTGATCCTGATTCA 57.324 34.615 14.71 0.00 0.00 2.57
2401 2475 4.945543 TGATCCTGATTCATGTTTGGACTG 59.054 41.667 0.00 0.00 0.00 3.51
2413 2487 6.427853 TCATGTTTGGACTGTGAGATAGTTTG 59.572 38.462 0.00 0.00 0.00 2.93
2418 2492 5.016831 TGGACTGTGAGATAGTTTGCTCTA 58.983 41.667 0.00 0.00 32.44 2.43
2420 2494 5.982516 GGACTGTGAGATAGTTTGCTCTATG 59.017 44.000 0.00 0.00 31.71 2.23
2467 2541 5.993748 TCACACATATTACTGTCACCTGA 57.006 39.130 0.00 0.00 0.00 3.86
2468 2542 5.965922 TCACACATATTACTGTCACCTGAG 58.034 41.667 0.00 0.00 0.00 3.35
2481 2555 7.004086 ACTGTCACCTGAGAATTTTATTGGAA 58.996 34.615 0.00 0.00 0.00 3.53
2505 2581 7.969387 ATGAAAAATTCCGTTGTAATCGATG 57.031 32.000 0.00 0.00 0.00 3.84
2506 2582 6.318628 TGAAAAATTCCGTTGTAATCGATGG 58.681 36.000 0.00 0.00 35.87 3.51
2511 2587 5.783100 TTCCGTTGTAATCGATGGTTAAC 57.217 39.130 0.00 0.00 35.97 2.01
2512 2588 3.858812 TCCGTTGTAATCGATGGTTAACG 59.141 43.478 20.86 20.86 39.10 3.18
2524 2600 3.220507 TGGTTAACGTGTACATCCTCG 57.779 47.619 0.00 0.00 0.00 4.63
2548 2644 0.541863 AATGAGGCTGTAGTTCCCCG 59.458 55.000 0.00 0.00 0.00 5.73
2560 2656 1.913419 AGTTCCCCGGCAGAAAATAGA 59.087 47.619 6.72 0.00 0.00 1.98
2562 2658 3.714798 AGTTCCCCGGCAGAAAATAGATA 59.285 43.478 6.72 0.00 0.00 1.98
2565 2661 3.323979 TCCCCGGCAGAAAATAGATAGAC 59.676 47.826 0.00 0.00 0.00 2.59
2581 2677 4.513692 AGATAGACGCTGTAGAGTAAGCAG 59.486 45.833 0.00 0.00 39.47 4.24
2597 2693 6.568869 AGTAAGCAGCTACATTCTTCAGTAG 58.431 40.000 0.00 0.00 40.45 2.57
2613 2709 8.982091 TCTTCAGTAGATATACTTACACAGCT 57.018 34.615 0.00 0.00 0.00 4.24
2620 2716 0.902531 TACTTACACAGCTCCTGCCC 59.097 55.000 0.00 0.00 40.80 5.36
2639 2735 3.699038 GCCCATGCTAAGGTGTCAATTAA 59.301 43.478 0.00 0.00 33.53 1.40
2642 2738 5.184864 CCCATGCTAAGGTGTCAATTAACAA 59.815 40.000 0.00 0.00 0.00 2.83
2647 2743 6.040391 TGCTAAGGTGTCAATTAACAAAGCTT 59.960 34.615 0.00 0.00 30.46 3.74
2657 2753 4.749245 TTAACAAAGCTTCAGTGCTAGC 57.251 40.909 8.10 8.10 43.24 3.42
2662 2758 2.503895 AGCTTCAGTGCTAGCCATTT 57.496 45.000 13.29 0.00 42.10 2.32
2672 2768 3.375299 GTGCTAGCCATTTCGTCAGAATT 59.625 43.478 13.29 0.00 36.09 2.17
2703 2799 7.837202 AGCATGTGTTTCATTATCATTTTGG 57.163 32.000 0.00 0.00 34.09 3.28
2704 2800 7.613585 AGCATGTGTTTCATTATCATTTTGGA 58.386 30.769 0.00 0.00 34.09 3.53
2705 2801 7.546667 AGCATGTGTTTCATTATCATTTTGGAC 59.453 33.333 0.00 0.00 34.09 4.02
2706 2802 7.201548 GCATGTGTTTCATTATCATTTTGGACC 60.202 37.037 0.00 0.00 34.09 4.46
2707 2803 6.385843 TGTGTTTCATTATCATTTTGGACCG 58.614 36.000 0.00 0.00 0.00 4.79
2708 2804 6.207614 TGTGTTTCATTATCATTTTGGACCGA 59.792 34.615 0.00 0.00 0.00 4.69
2709 2805 7.093988 TGTGTTTCATTATCATTTTGGACCGAT 60.094 33.333 0.00 0.00 0.00 4.18
2710 2806 7.432252 GTGTTTCATTATCATTTTGGACCGATC 59.568 37.037 0.00 0.00 0.00 3.69
2711 2807 5.922739 TCATTATCATTTTGGACCGATCG 57.077 39.130 8.51 8.51 0.00 3.69
2712 2808 5.364778 TCATTATCATTTTGGACCGATCGT 58.635 37.500 15.09 1.83 0.00 3.73
2713 2809 5.465390 TCATTATCATTTTGGACCGATCGTC 59.535 40.000 15.09 11.29 41.15 4.20
2714 2810 2.753055 TCATTTTGGACCGATCGTCA 57.247 45.000 15.09 6.65 43.95 4.35
2715 2811 2.343101 TCATTTTGGACCGATCGTCAC 58.657 47.619 15.09 3.82 43.95 3.67
2716 2812 1.396996 CATTTTGGACCGATCGTCACC 59.603 52.381 15.09 13.91 43.95 4.02
2717 2813 0.393448 TTTTGGACCGATCGTCACCA 59.607 50.000 15.09 16.25 43.95 4.17
2718 2814 0.037697 TTTGGACCGATCGTCACCAG 60.038 55.000 15.09 0.00 43.95 4.00
2719 2815 1.183030 TTGGACCGATCGTCACCAGT 61.183 55.000 15.09 3.01 43.95 4.00
2730 2826 3.669536 TCGTCACCAGTAAATGCATTGA 58.330 40.909 13.82 1.45 0.00 2.57
2762 2867 7.490962 TTAGTTATTGGTTATCCTTGCATCG 57.509 36.000 0.00 0.00 34.23 3.84
2766 2871 1.217882 GGTTATCCTTGCATCGTCGG 58.782 55.000 0.00 0.00 0.00 4.79
2786 2891 7.864379 TCGTCGGTCCATCTTTTTATATCTAAC 59.136 37.037 0.00 0.00 0.00 2.34
2787 2892 7.866393 CGTCGGTCCATCTTTTTATATCTAACT 59.134 37.037 0.00 0.00 0.00 2.24
2813 2920 9.619316 TTATTTTAGATGTTCAATTCACCGTTG 57.381 29.630 0.00 0.00 0.00 4.10
2829 2936 4.154015 CACCGTTGATGCAGATTTTGTAGA 59.846 41.667 0.00 0.00 0.00 2.59
2861 2968 3.119849 AGACAACAACTTGTGTGCAGTTC 60.120 43.478 0.00 0.00 40.93 3.01
2864 2971 4.142687 ACAACAACTTGTGTGCAGTTCTAC 60.143 41.667 0.00 0.00 40.60 2.59
2869 2976 0.250295 TGTGTGCAGTTCTACCAGCC 60.250 55.000 0.00 0.00 0.00 4.85
2875 2982 1.270839 GCAGTTCTACCAGCCTGTTGA 60.271 52.381 0.00 0.00 0.00 3.18
2882 2989 4.832248 TCTACCAGCCTGTTGAAACTATG 58.168 43.478 0.00 0.00 0.00 2.23
2883 2990 3.788227 ACCAGCCTGTTGAAACTATGA 57.212 42.857 0.00 0.00 0.00 2.15
2928 3040 5.183904 AGAAAAGAATTCACCCATGCAGTAC 59.816 40.000 8.44 0.00 0.00 2.73
2933 3045 2.877097 TCACCCATGCAGTACAACAT 57.123 45.000 0.00 0.00 0.00 2.71
2934 3046 3.990959 TCACCCATGCAGTACAACATA 57.009 42.857 0.00 0.00 0.00 2.29
2935 3047 3.605634 TCACCCATGCAGTACAACATAC 58.394 45.455 0.00 0.00 0.00 2.39
2936 3048 3.263170 TCACCCATGCAGTACAACATACT 59.737 43.478 0.00 0.00 0.00 2.12
2937 3049 3.374988 CACCCATGCAGTACAACATACTG 59.625 47.826 9.29 9.29 45.62 2.74
2953 3065 9.851686 ACAACATACTGTAATATGGATGTGAAT 57.148 29.630 0.00 0.00 36.33 2.57
2960 3072 9.034800 ACTGTAATATGGATGTGAATTGGTTTT 57.965 29.630 0.00 0.00 0.00 2.43
2961 3073 9.304731 CTGTAATATGGATGTGAATTGGTTTTG 57.695 33.333 0.00 0.00 0.00 2.44
2977 3089 4.288626 TGGTTTTGCCTATTCCTGTAGTCT 59.711 41.667 0.00 0.00 38.35 3.24
2981 3093 4.471904 TGCCTATTCCTGTAGTCTGTTG 57.528 45.455 0.00 0.00 0.00 3.33
2989 3101 1.070758 CTGTAGTCTGTTGGTGGCAGT 59.929 52.381 0.00 0.00 35.60 4.40
3063 3180 8.873215 ACGAATGTTTATCTTCATCGTCTTAT 57.127 30.769 0.00 0.00 0.00 1.73
3112 3229 6.993308 TGAAGTGTTACAATTTAGGCTGTGTA 59.007 34.615 0.00 0.00 0.00 2.90
3113 3230 7.663905 TGAAGTGTTACAATTTAGGCTGTGTAT 59.336 33.333 0.00 0.00 0.00 2.29
3116 3233 9.162764 AGTGTTACAATTTAGGCTGTGTATAAG 57.837 33.333 0.00 0.00 0.00 1.73
3130 3247 8.507249 GGCTGTGTATAAGAAAATAGGCTAATG 58.493 37.037 0.00 0.00 0.00 1.90
3165 3282 6.758886 GGAGTTTCAACTGTATATGACCTCTG 59.241 42.308 0.00 0.00 39.88 3.35
3172 3289 8.491958 TCAACTGTATATGACCTCTGTAGACTA 58.508 37.037 0.00 0.00 0.00 2.59
3173 3290 8.779303 CAACTGTATATGACCTCTGTAGACTAG 58.221 40.741 0.00 0.00 0.00 2.57
3174 3291 8.036585 ACTGTATATGACCTCTGTAGACTAGT 57.963 38.462 0.00 0.00 0.00 2.57
3175 3292 9.156940 ACTGTATATGACCTCTGTAGACTAGTA 57.843 37.037 0.00 0.00 0.00 1.82
3182 3299 8.087303 TGACCTCTGTAGACTAGTATACTTCA 57.913 38.462 24.08 16.10 0.00 3.02
3183 3300 8.715842 TGACCTCTGTAGACTAGTATACTTCAT 58.284 37.037 24.08 9.56 0.00 2.57
3190 3307 9.848710 TGTAGACTAGTATACTTCATAGTTGCT 57.151 33.333 24.08 5.53 35.78 3.91
3197 3314 8.534954 AGTATACTTCATAGTTGCTACTTCCA 57.465 34.615 6.03 0.00 35.78 3.53
3198 3315 9.148879 AGTATACTTCATAGTTGCTACTTCCAT 57.851 33.333 6.03 0.00 35.78 3.41
3199 3316 9.197694 GTATACTTCATAGTTGCTACTTCCATG 57.802 37.037 6.03 4.75 35.78 3.66
3200 3317 6.299805 ACTTCATAGTTGCTACTTCCATGA 57.700 37.500 6.03 7.10 35.78 3.07
3201 3318 6.711277 ACTTCATAGTTGCTACTTCCATGAA 58.289 36.000 17.95 17.95 35.79 2.57
3202 3319 7.341805 ACTTCATAGTTGCTACTTCCATGAAT 58.658 34.615 18.78 10.70 36.77 2.57
3203 3320 7.831193 ACTTCATAGTTGCTACTTCCATGAATT 59.169 33.333 18.78 13.56 36.77 2.17
3204 3321 8.579850 TTCATAGTTGCTACTTCCATGAATTT 57.420 30.769 16.16 0.00 34.37 1.82
3205 3322 8.213518 TCATAGTTGCTACTTCCATGAATTTC 57.786 34.615 6.03 0.00 35.78 2.17
3206 3323 5.904362 AGTTGCTACTTCCATGAATTTCC 57.096 39.130 0.00 0.00 0.00 3.13
3207 3324 5.574188 AGTTGCTACTTCCATGAATTTCCT 58.426 37.500 0.00 0.00 0.00 3.36
3208 3325 6.012745 AGTTGCTACTTCCATGAATTTCCTT 58.987 36.000 0.00 0.00 0.00 3.36
3209 3326 7.175104 AGTTGCTACTTCCATGAATTTCCTTA 58.825 34.615 0.00 0.00 0.00 2.69
3210 3327 7.669722 AGTTGCTACTTCCATGAATTTCCTTAA 59.330 33.333 0.00 0.00 0.00 1.85
3211 3328 8.470002 GTTGCTACTTCCATGAATTTCCTTAAT 58.530 33.333 0.00 0.00 0.00 1.40
3236 3353 4.595986 AGTTCACCTAAAACAACCAGTGT 58.404 39.130 0.00 0.00 44.64 3.55
3238 3355 6.181908 AGTTCACCTAAAACAACCAGTGTAA 58.818 36.000 0.00 0.00 40.60 2.41
3245 3362 8.194769 ACCTAAAACAACCAGTGTAAGAATTTG 58.805 33.333 0.00 0.00 40.60 2.32
3326 3443 6.880484 TGCATATTTCAGAATTGGAAATGCT 58.120 32.000 18.30 8.17 42.99 3.79
3348 3465 2.742348 TCTCTGCATCCATGGCAAAAT 58.258 42.857 6.96 0.00 41.39 1.82
3356 3473 2.117865 TCCATGGCAAAATGGGATTCC 58.882 47.619 6.96 0.00 46.17 3.01
3372 3489 3.007398 GGATTCCGCTTCTCTGGACATAT 59.993 47.826 0.00 0.00 32.95 1.78
3373 3490 3.459232 TTCCGCTTCTCTGGACATATG 57.541 47.619 0.00 0.00 32.95 1.78
3374 3491 1.069204 TCCGCTTCTCTGGACATATGC 59.931 52.381 1.58 0.00 0.00 3.14
3376 3493 2.297315 CCGCTTCTCTGGACATATGCTA 59.703 50.000 1.58 0.00 0.00 3.49
3377 3494 3.056250 CCGCTTCTCTGGACATATGCTAT 60.056 47.826 1.58 0.00 0.00 2.97
3378 3495 4.158579 CCGCTTCTCTGGACATATGCTATA 59.841 45.833 1.58 0.00 0.00 1.31
3379 3496 5.163468 CCGCTTCTCTGGACATATGCTATAT 60.163 44.000 1.58 0.00 0.00 0.86
3382 3499 7.976175 CGCTTCTCTGGACATATGCTATATTTA 59.024 37.037 1.58 0.00 0.00 1.40
3384 3501 9.593134 CTTCTCTGGACATATGCTATATTTACC 57.407 37.037 1.58 0.00 0.00 2.85
3385 3502 8.901472 TCTCTGGACATATGCTATATTTACCT 57.099 34.615 1.58 0.00 0.00 3.08
3386 3503 8.972127 TCTCTGGACATATGCTATATTTACCTC 58.028 37.037 1.58 0.00 0.00 3.85
3387 3504 8.901472 TCTGGACATATGCTATATTTACCTCT 57.099 34.615 1.58 0.00 0.00 3.69
3389 3506 9.950496 CTGGACATATGCTATATTTACCTCTTT 57.050 33.333 1.58 0.00 0.00 2.52
3397 3514 9.924650 ATGCTATATTTACCTCTTTACGTTAGG 57.075 33.333 0.00 0.00 36.42 2.69
3398 3515 8.362639 TGCTATATTTACCTCTTTACGTTAGGG 58.637 37.037 0.00 0.00 34.52 3.53
3399 3516 7.816513 GCTATATTTACCTCTTTACGTTAGGGG 59.183 40.741 13.21 13.21 39.31 4.79
3400 3517 3.893326 TTACCTCTTTACGTTAGGGGC 57.107 47.619 14.39 0.00 36.69 5.80
3401 3518 1.948391 ACCTCTTTACGTTAGGGGCT 58.052 50.000 14.39 2.14 36.69 5.19
3402 3519 1.553704 ACCTCTTTACGTTAGGGGCTG 59.446 52.381 14.39 0.00 36.69 4.85
3403 3520 1.553704 CCTCTTTACGTTAGGGGCTGT 59.446 52.381 0.00 0.00 0.00 4.40
3404 3521 2.762327 CCTCTTTACGTTAGGGGCTGTA 59.238 50.000 0.00 0.00 0.00 2.74
3405 3522 3.196254 CCTCTTTACGTTAGGGGCTGTAA 59.804 47.826 0.00 0.00 0.00 2.41
3406 3523 4.141779 CCTCTTTACGTTAGGGGCTGTAAT 60.142 45.833 0.00 0.00 0.00 1.89
3407 3524 5.014808 TCTTTACGTTAGGGGCTGTAATC 57.985 43.478 0.00 0.00 0.00 1.75
3408 3525 4.467082 TCTTTACGTTAGGGGCTGTAATCA 59.533 41.667 0.00 0.00 0.00 2.57
3409 3526 2.981859 ACGTTAGGGGCTGTAATCAG 57.018 50.000 0.00 0.00 43.87 2.90
3410 3527 2.463752 ACGTTAGGGGCTGTAATCAGA 58.536 47.619 0.00 0.00 43.76 3.27
3413 3530 4.038883 ACGTTAGGGGCTGTAATCAGATAC 59.961 45.833 0.00 0.00 43.76 2.24
3419 3536 4.508662 GGGCTGTAATCAGATACCATAGC 58.491 47.826 0.00 0.00 43.76 2.97
3421 3538 4.177026 GCTGTAATCAGATACCATAGCGG 58.823 47.826 0.00 0.00 43.76 5.52
3436 3553 2.366640 AGCGGATCTACCTGCTTCTA 57.633 50.000 0.00 0.00 42.45 2.10
3482 3599 8.693120 TCGAATGACAAGAGTAAGGTAGATAT 57.307 34.615 0.00 0.00 0.00 1.63
3484 3601 9.186323 CGAATGACAAGAGTAAGGTAGATATTG 57.814 37.037 0.00 0.00 0.00 1.90
3528 3645 8.943925 CGTAGTATCTTTCAACAACAACAAAAG 58.056 33.333 0.00 0.00 0.00 2.27
3545 3662 5.329399 ACAAAAGAGGGTTTGCATGGTATA 58.671 37.500 0.00 0.00 41.33 1.47
3547 3664 6.096846 ACAAAAGAGGGTTTGCATGGTATATC 59.903 38.462 0.00 0.00 41.33 1.63
3548 3665 5.653255 AAGAGGGTTTGCATGGTATATCT 57.347 39.130 0.00 0.00 0.00 1.98
3549 3666 6.763715 AAGAGGGTTTGCATGGTATATCTA 57.236 37.500 0.00 0.00 0.00 1.98
3550 3667 6.365970 AGAGGGTTTGCATGGTATATCTAG 57.634 41.667 0.00 0.00 0.00 2.43
3551 3668 4.911390 AGGGTTTGCATGGTATATCTAGC 58.089 43.478 0.00 0.00 0.00 3.42
3554 3671 5.513094 GGGTTTGCATGGTATATCTAGCTGA 60.513 44.000 0.00 0.00 0.00 4.26
3555 3672 5.409826 GGTTTGCATGGTATATCTAGCTGAC 59.590 44.000 0.00 1.89 0.00 3.51
3556 3673 6.226787 GTTTGCATGGTATATCTAGCTGACT 58.773 40.000 0.00 0.00 0.00 3.41
3571 3688 3.771798 GCTGACTAGCTGTAGTGGTAAC 58.228 50.000 0.00 0.00 46.57 2.50
3572 3689 3.444388 GCTGACTAGCTGTAGTGGTAACT 59.556 47.826 0.00 0.00 46.57 2.24
3573 3690 4.675671 GCTGACTAGCTGTAGTGGTAACTG 60.676 50.000 0.00 0.00 46.57 3.16
3574 3691 3.762288 TGACTAGCTGTAGTGGTAACTGG 59.238 47.826 0.00 0.00 39.78 4.00
3575 3692 3.762823 GACTAGCTGTAGTGGTAACTGGT 59.237 47.826 0.00 0.00 39.78 4.00
3576 3693 4.927049 ACTAGCTGTAGTGGTAACTGGTA 58.073 43.478 0.00 0.00 38.14 3.25
3577 3694 5.327732 ACTAGCTGTAGTGGTAACTGGTAA 58.672 41.667 0.00 0.00 38.14 2.85
3578 3695 4.803098 AGCTGTAGTGGTAACTGGTAAG 57.197 45.455 0.00 0.00 37.19 2.34
3579 3696 3.514309 AGCTGTAGTGGTAACTGGTAAGG 59.486 47.826 0.00 0.00 37.19 2.69
3580 3697 3.369157 GCTGTAGTGGTAACTGGTAAGGG 60.369 52.174 0.00 0.00 37.19 3.95
3581 3698 3.836562 CTGTAGTGGTAACTGGTAAGGGT 59.163 47.826 0.00 0.00 37.19 4.34
3593 3710 6.216801 ACTGGTAAGGGTTGTTTTCTTTTC 57.783 37.500 0.00 0.00 0.00 2.29
3623 3740 3.004315 ACCAAAGTTAATTCTGCACCACG 59.996 43.478 0.00 0.00 0.00 4.94
3627 3744 5.607119 AAGTTAATTCTGCACCACGTTAG 57.393 39.130 0.00 0.00 0.00 2.34
3642 3759 7.022384 CACCACGTTAGTTTTTGTTTCACTTA 58.978 34.615 0.00 0.00 0.00 2.24
3644 3761 7.538334 ACCACGTTAGTTTTTGTTTCACTTAAC 59.462 33.333 0.00 0.00 0.00 2.01
3698 3878 7.540055 GCTATTCTTCTTTCAACATTGAAGGTG 59.460 37.037 14.06 9.69 46.68 4.00
3704 3884 4.916983 TTCAACATTGAAGGTGTTCCTG 57.083 40.909 2.89 0.00 44.35 3.86
3707 3887 2.863809 ACATTGAAGGTGTTCCTGGTC 58.136 47.619 0.00 0.00 44.35 4.02
3714 3894 1.469335 GGTGTTCCTGGTCAGACCGA 61.469 60.000 15.24 4.08 42.58 4.69
3727 3907 2.354305 ACCGACAGTCGCGTGAAC 60.354 61.111 18.02 0.00 38.82 3.18
3730 3910 2.007114 CGACAGTCGCGTGAACGAA 61.007 57.895 10.66 0.00 44.93 3.85
3735 3915 2.430244 TCGCGTGAACGAAGGCTC 60.430 61.111 5.77 0.00 43.02 4.70
3753 3933 2.419851 GCTCTGCTTCTGTGGCTTCTAT 60.420 50.000 0.00 0.00 0.00 1.98
3808 3988 3.294493 TGGCCTTTTCGCAGGTGC 61.294 61.111 3.32 0.00 36.15 5.01
3844 4024 3.675228 GCCTCTGCATTCCATCTTGTTTG 60.675 47.826 0.00 0.00 37.47 2.93
3847 4027 3.760151 TCTGCATTCCATCTTGTTTGGAG 59.240 43.478 0.00 0.00 43.87 3.86
3884 4064 0.951558 TTTTTCTTGAGCCGCTGTCC 59.048 50.000 0.00 0.00 0.00 4.02
3886 4066 0.108585 TTTCTTGAGCCGCTGTCCTT 59.891 50.000 0.00 0.00 0.00 3.36
3891 4071 0.391661 TGAGCCGCTGTCCTTCATTC 60.392 55.000 0.00 0.00 0.00 2.67
3894 4074 0.178068 GCCGCTGTCCTTCATTCCTA 59.822 55.000 0.00 0.00 0.00 2.94
3908 4088 7.125811 TCCTTCATTCCTACTACAGCTTGTAAT 59.874 37.037 0.00 0.00 31.67 1.89
3909 4089 8.421784 CCTTCATTCCTACTACAGCTTGTAATA 58.578 37.037 0.00 0.00 31.67 0.98
3910 4090 9.469807 CTTCATTCCTACTACAGCTTGTAATAG 57.530 37.037 0.00 0.00 33.75 1.73
3911 4091 8.534954 TCATTCCTACTACAGCTTGTAATAGT 57.465 34.615 9.42 4.71 32.51 2.12
3912 4092 8.414003 TCATTCCTACTACAGCTTGTAATAGTG 58.586 37.037 9.42 4.29 32.51 2.74
3913 4093 7.713734 TTCCTACTACAGCTTGTAATAGTGT 57.286 36.000 9.42 0.00 32.51 3.55
3914 4094 7.713734 TCCTACTACAGCTTGTAATAGTGTT 57.286 36.000 9.42 0.00 32.51 3.32
3915 4095 8.130671 TCCTACTACAGCTTGTAATAGTGTTT 57.869 34.615 9.42 0.00 32.51 2.83
3916 4096 8.591072 TCCTACTACAGCTTGTAATAGTGTTTT 58.409 33.333 9.42 0.00 32.51 2.43
3917 4097 9.216117 CCTACTACAGCTTGTAATAGTGTTTTT 57.784 33.333 9.42 0.00 32.51 1.94
3946 4126 6.706270 AGAATCTACACACCTTGTAACAGTTG 59.294 38.462 0.00 0.00 40.33 3.16
3953 4133 3.560068 CACCTTGTAACAGTTGTGTCCTC 59.440 47.826 0.00 0.00 35.08 3.71
4028 4214 4.333926 GCAAGGTGGCTAGAATTAAGACAG 59.666 45.833 0.00 0.00 30.93 3.51
4279 4465 6.115446 TGATCAAATGGAAGTGAGGATACAC 58.885 40.000 0.00 0.00 40.60 2.90
4325 4516 5.187687 AGTTACAAACTTTCTCCAACGGAA 58.812 37.500 0.00 0.00 39.04 4.30
4329 4520 2.545537 ACTTTCTCCAACGGAACCTC 57.454 50.000 0.00 0.00 0.00 3.85
4336 4527 0.685097 CCAACGGAACCTCTTCCTCA 59.315 55.000 0.00 0.00 43.73 3.86
4352 4543 5.934043 TCTTCCTCACACATTGATGTAACTG 59.066 40.000 0.00 0.00 39.39 3.16
4354 4545 4.041567 TCCTCACACATTGATGTAACTGGT 59.958 41.667 0.00 0.00 39.39 4.00
4362 4553 7.665559 ACACATTGATGTAACTGGTTGATAACT 59.334 33.333 0.00 0.00 39.39 2.24
4363 4554 9.161629 CACATTGATGTAACTGGTTGATAACTA 57.838 33.333 0.00 0.00 39.39 2.24
4364 4555 9.383519 ACATTGATGTAACTGGTTGATAACTAG 57.616 33.333 3.89 3.89 41.31 2.57
4366 4557 6.346096 TGATGTAACTGGTTGATAACTAGGC 58.654 40.000 9.38 1.55 43.50 3.93
4367 4558 4.751060 TGTAACTGGTTGATAACTAGGCG 58.249 43.478 9.38 0.00 43.50 5.52
4368 4559 2.311124 ACTGGTTGATAACTAGGCGC 57.689 50.000 0.00 0.00 43.50 6.53
4369 4560 1.209128 CTGGTTGATAACTAGGCGCG 58.791 55.000 0.00 0.00 36.46 6.86
4371 4562 1.558383 GTTGATAACTAGGCGCGCG 59.442 57.895 28.44 28.44 0.00 6.86
4372 4563 2.235016 TTGATAACTAGGCGCGCGC 61.235 57.895 44.40 44.40 41.06 6.86
4395 4586 4.467084 GCCTCCGCGACCATCCAA 62.467 66.667 8.23 0.00 0.00 3.53
4396 4587 2.505982 CCTCCGCGACCATCCAAT 59.494 61.111 8.23 0.00 0.00 3.16
4408 4599 4.023707 CGACCATCCAATTAGCCTTTGATC 60.024 45.833 0.00 0.00 0.00 2.92
4443 4634 2.203337 CCCCCACCACACACACAG 60.203 66.667 0.00 0.00 0.00 3.66
4475 4666 0.110056 GTGAGCCATGTTGCAAGACG 60.110 55.000 0.00 0.00 0.00 4.18
4476 4667 1.236616 TGAGCCATGTTGCAAGACGG 61.237 55.000 4.00 4.00 0.00 4.79
4526 4717 1.227497 GCCAGATTGAGGGAGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
4528 4719 1.333636 CCAGATTGAGGGAGAGCGGT 61.334 60.000 0.00 0.00 0.00 5.68
4529 4720 0.179089 CAGATTGAGGGAGAGCGGTG 60.179 60.000 0.00 0.00 0.00 4.94
4560 4751 1.995484 CTCGCATCGAAGACAACACAT 59.005 47.619 0.00 0.00 42.51 3.21
4561 4752 1.726248 TCGCATCGAAGACAACACATG 59.274 47.619 0.00 0.00 42.51 3.21
4563 4754 1.787989 GCATCGAAGACAACACATGCG 60.788 52.381 0.00 0.00 42.51 4.73
4573 4903 1.464219 CAACACATGCGTGATGCTACA 59.536 47.619 14.17 0.00 46.80 2.74
4607 4937 2.839098 CAAGGCTGGTCACCTGGT 59.161 61.111 2.42 0.00 37.67 4.00
4608 4938 1.601759 CAAGGCTGGTCACCTGGTG 60.602 63.158 20.86 20.86 37.67 4.17
4609 4939 3.497884 AAGGCTGGTCACCTGGTGC 62.498 63.158 22.02 15.97 37.67 5.01
4610 4940 3.958860 GGCTGGTCACCTGGTGCT 61.959 66.667 22.02 0.00 32.98 4.40
4611 4941 2.670934 GCTGGTCACCTGGTGCTG 60.671 66.667 22.02 13.28 32.98 4.41
4612 4942 2.670934 CTGGTCACCTGGTGCTGC 60.671 66.667 22.02 13.47 32.98 5.25
4613 4943 3.480679 CTGGTCACCTGGTGCTGCA 62.481 63.158 22.02 0.00 32.98 4.41
4614 4944 2.203337 GGTCACCTGGTGCTGCAA 60.203 61.111 22.02 1.12 32.98 4.08
4615 4945 1.604593 GGTCACCTGGTGCTGCAAT 60.605 57.895 22.02 0.00 32.98 3.56
4616 4946 1.589716 GGTCACCTGGTGCTGCAATC 61.590 60.000 22.02 0.68 32.98 2.67
4617 4947 1.303561 TCACCTGGTGCTGCAATCC 60.304 57.895 22.02 2.62 32.98 3.01
4618 4948 1.604308 CACCTGGTGCTGCAATCCA 60.604 57.895 14.87 7.94 0.00 3.41
4619 4949 1.303888 ACCTGGTGCTGCAATCCAG 60.304 57.895 24.80 24.80 45.67 3.86
4622 4952 3.675995 TGGTGCTGCAATCCAGATT 57.324 47.368 2.77 0.00 44.64 2.40
4623 4953 1.927487 TGGTGCTGCAATCCAGATTT 58.073 45.000 2.77 0.00 44.64 2.17
4624 4954 2.250031 TGGTGCTGCAATCCAGATTTT 58.750 42.857 2.77 0.00 44.64 1.82
4625 4955 2.633967 TGGTGCTGCAATCCAGATTTTT 59.366 40.909 2.77 0.00 44.64 1.94
4652 4982 4.297207 GAGGAATACTCCCGGCCT 57.703 61.111 0.00 0.00 43.64 5.19
4653 4983 2.051105 GAGGAATACTCCCGGCCTC 58.949 63.158 0.00 6.31 43.64 4.70
4654 4984 0.470268 GAGGAATACTCCCGGCCTCT 60.470 60.000 13.12 0.00 43.64 3.69
4655 4985 0.760945 AGGAATACTCCCGGCCTCTG 60.761 60.000 0.00 0.00 43.64 3.35
4656 4986 1.069935 GAATACTCCCGGCCTCTGC 59.930 63.158 0.00 0.00 0.00 4.26
4657 4987 1.686325 GAATACTCCCGGCCTCTGCA 61.686 60.000 0.00 0.00 40.13 4.41
4658 4988 1.056700 AATACTCCCGGCCTCTGCAT 61.057 55.000 0.00 0.00 40.13 3.96
4659 4989 1.476007 ATACTCCCGGCCTCTGCATC 61.476 60.000 0.00 0.00 40.13 3.91
4660 4990 2.589610 TACTCCCGGCCTCTGCATCT 62.590 60.000 0.00 0.00 40.13 2.90
4661 4991 3.457625 CTCCCGGCCTCTGCATCTG 62.458 68.421 0.00 0.00 40.13 2.90
4662 4992 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
4663 4993 3.790437 CCGGCCTCTGCATCTGGT 61.790 66.667 0.00 0.00 40.13 4.00
4664 4994 2.202987 CGGCCTCTGCATCTGGTC 60.203 66.667 0.00 0.00 40.13 4.02
4665 4995 2.202987 GGCCTCTGCATCTGGTCG 60.203 66.667 0.00 0.00 40.13 4.79
4666 4996 2.725312 GGCCTCTGCATCTGGTCGA 61.725 63.158 0.00 0.00 40.13 4.20
4667 4997 1.445095 GCCTCTGCATCTGGTCGAT 59.555 57.895 0.00 0.00 37.47 3.59
4675 5005 1.422388 CATCTGGTCGATGCATACGG 58.578 55.000 15.33 5.89 42.75 4.02
4676 5006 0.319900 ATCTGGTCGATGCATACGGC 60.320 55.000 15.33 14.05 45.13 5.68
4679 5009 3.319904 GTCGATGCATACGGCCAC 58.680 61.111 2.24 6.11 43.89 5.01
4680 5010 1.227263 GTCGATGCATACGGCCACT 60.227 57.895 2.24 0.00 43.89 4.00
4681 5011 0.810031 GTCGATGCATACGGCCACTT 60.810 55.000 2.24 0.00 43.89 3.16
4682 5012 0.107897 TCGATGCATACGGCCACTTT 60.108 50.000 2.24 0.00 43.89 2.66
4683 5013 1.137282 TCGATGCATACGGCCACTTTA 59.863 47.619 2.24 0.00 43.89 1.85
4684 5014 2.143122 CGATGCATACGGCCACTTTAT 58.857 47.619 2.24 0.00 43.89 1.40
4685 5015 2.548057 CGATGCATACGGCCACTTTATT 59.452 45.455 2.24 0.00 43.89 1.40
4686 5016 3.743911 CGATGCATACGGCCACTTTATTA 59.256 43.478 2.24 0.00 43.89 0.98
4687 5017 4.212425 CGATGCATACGGCCACTTTATTAA 59.788 41.667 2.24 0.00 43.89 1.40
4688 5018 5.106712 CGATGCATACGGCCACTTTATTAAT 60.107 40.000 2.24 0.00 43.89 1.40
4689 5019 6.567701 CGATGCATACGGCCACTTTATTAATT 60.568 38.462 2.24 0.00 43.89 1.40
4690 5020 7.360522 CGATGCATACGGCCACTTTATTAATTA 60.361 37.037 2.24 0.00 43.89 1.40
4691 5021 7.753309 TGCATACGGCCACTTTATTAATTAT 57.247 32.000 2.24 0.00 43.89 1.28
4692 5022 8.172352 TGCATACGGCCACTTTATTAATTATT 57.828 30.769 2.24 0.00 43.89 1.40
4693 5023 9.286170 TGCATACGGCCACTTTATTAATTATTA 57.714 29.630 2.24 0.00 43.89 0.98
4694 5024 9.769093 GCATACGGCCACTTTATTAATTATTAG 57.231 33.333 2.24 0.00 36.11 1.73
4695 5025 9.769093 CATACGGCCACTTTATTAATTATTAGC 57.231 33.333 2.24 0.00 0.00 3.09
4696 5026 6.894828 ACGGCCACTTTATTAATTATTAGCG 58.105 36.000 2.24 0.00 0.00 4.26
4697 5027 5.793457 CGGCCACTTTATTAATTATTAGCGC 59.207 40.000 2.24 0.00 0.00 5.92
4698 5028 6.566942 CGGCCACTTTATTAATTATTAGCGCA 60.567 38.462 11.47 0.00 0.00 6.09
4699 5029 7.142680 GGCCACTTTATTAATTATTAGCGCAA 58.857 34.615 11.47 1.85 0.00 4.85
4700 5030 7.650104 GGCCACTTTATTAATTATTAGCGCAAA 59.350 33.333 11.47 0.00 0.00 3.68
4701 5031 9.026074 GCCACTTTATTAATTATTAGCGCAAAA 57.974 29.630 11.47 3.42 0.00 2.44
4710 5040 9.909644 TTAATTATTAGCGCAAAACCTTACAAA 57.090 25.926 11.47 0.00 0.00 2.83
4711 5041 8.460831 AATTATTAGCGCAAAACCTTACAAAG 57.539 30.769 11.47 0.00 0.00 2.77
4712 5042 4.904253 TTAGCGCAAAACCTTACAAAGT 57.096 36.364 11.47 0.00 0.00 2.66
4713 5043 3.349488 AGCGCAAAACCTTACAAAGTC 57.651 42.857 11.47 0.00 0.00 3.01
4714 5044 2.041244 GCGCAAAACCTTACAAAGTCG 58.959 47.619 0.30 0.00 0.00 4.18
4715 5045 2.540157 GCGCAAAACCTTACAAAGTCGT 60.540 45.455 0.30 0.00 0.00 4.34
4716 5046 3.303263 GCGCAAAACCTTACAAAGTCGTA 60.303 43.478 0.30 0.00 0.00 3.43
4717 5047 4.206088 CGCAAAACCTTACAAAGTCGTAC 58.794 43.478 0.00 0.00 0.00 3.67
4718 5048 4.260294 CGCAAAACCTTACAAAGTCGTACA 60.260 41.667 0.00 0.00 0.00 2.90
4719 5049 5.571277 GCAAAACCTTACAAAGTCGTACAA 58.429 37.500 0.00 0.00 0.00 2.41
4720 5050 5.453266 GCAAAACCTTACAAAGTCGTACAAC 59.547 40.000 0.00 0.00 0.00 3.32
4721 5051 6.544622 CAAAACCTTACAAAGTCGTACAACA 58.455 36.000 0.00 0.00 0.00 3.33
4722 5052 5.978934 AACCTTACAAAGTCGTACAACAG 57.021 39.130 0.00 0.00 0.00 3.16
4723 5053 5.014808 ACCTTACAAAGTCGTACAACAGT 57.985 39.130 0.00 0.00 0.00 3.55
4724 5054 6.147864 ACCTTACAAAGTCGTACAACAGTA 57.852 37.500 0.00 0.00 0.00 2.74
4725 5055 6.572519 ACCTTACAAAGTCGTACAACAGTAA 58.427 36.000 0.00 0.00 0.00 2.24
4726 5056 6.698766 ACCTTACAAAGTCGTACAACAGTAAG 59.301 38.462 12.97 12.97 37.80 2.34
4727 5057 6.919662 CCTTACAAAGTCGTACAACAGTAAGA 59.080 38.462 17.98 0.00 39.45 2.10
4728 5058 7.096312 CCTTACAAAGTCGTACAACAGTAAGAC 60.096 40.741 17.98 11.88 43.23 3.01
4729 5059 5.045872 ACAAAGTCGTACAACAGTAAGACC 58.954 41.667 14.87 2.34 43.63 3.85
4730 5060 4.924305 AAGTCGTACAACAGTAAGACCA 57.076 40.909 14.87 0.00 43.63 4.02
4731 5061 4.924305 AGTCGTACAACAGTAAGACCAA 57.076 40.909 14.87 0.00 43.63 3.67
4732 5062 5.266733 AGTCGTACAACAGTAAGACCAAA 57.733 39.130 14.87 0.00 43.63 3.28
4733 5063 5.287226 AGTCGTACAACAGTAAGACCAAAG 58.713 41.667 14.87 0.00 43.63 2.77
4734 5064 4.053295 TCGTACAACAGTAAGACCAAAGC 58.947 43.478 0.00 0.00 0.00 3.51
4735 5065 3.185797 CGTACAACAGTAAGACCAAAGCC 59.814 47.826 0.00 0.00 0.00 4.35
4736 5066 3.290948 ACAACAGTAAGACCAAAGCCA 57.709 42.857 0.00 0.00 0.00 4.75
4737 5067 2.949644 ACAACAGTAAGACCAAAGCCAC 59.050 45.455 0.00 0.00 0.00 5.01
4738 5068 2.271944 ACAGTAAGACCAAAGCCACC 57.728 50.000 0.00 0.00 0.00 4.61
4739 5069 1.493022 ACAGTAAGACCAAAGCCACCA 59.507 47.619 0.00 0.00 0.00 4.17
4740 5070 2.108250 ACAGTAAGACCAAAGCCACCAT 59.892 45.455 0.00 0.00 0.00 3.55
4741 5071 2.749621 CAGTAAGACCAAAGCCACCATC 59.250 50.000 0.00 0.00 0.00 3.51
4742 5072 2.644798 AGTAAGACCAAAGCCACCATCT 59.355 45.455 0.00 0.00 0.00 2.90
4743 5073 2.683211 AAGACCAAAGCCACCATCTT 57.317 45.000 0.00 0.00 0.00 2.40
4744 5074 2.206576 AGACCAAAGCCACCATCTTC 57.793 50.000 0.00 0.00 0.00 2.87
4745 5075 0.804989 GACCAAAGCCACCATCTTCG 59.195 55.000 0.00 0.00 0.00 3.79
4746 5076 1.244019 ACCAAAGCCACCATCTTCGC 61.244 55.000 0.00 0.00 0.00 4.70
4747 5077 1.243342 CCAAAGCCACCATCTTCGCA 61.243 55.000 0.00 0.00 0.00 5.10
4748 5078 0.597568 CAAAGCCACCATCTTCGCAA 59.402 50.000 0.00 0.00 0.00 4.85
4749 5079 0.598065 AAAGCCACCATCTTCGCAAC 59.402 50.000 0.00 0.00 0.00 4.17
4750 5080 1.244019 AAGCCACCATCTTCGCAACC 61.244 55.000 0.00 0.00 0.00 3.77
4751 5081 1.675641 GCCACCATCTTCGCAACCT 60.676 57.895 0.00 0.00 0.00 3.50
4752 5082 1.648467 GCCACCATCTTCGCAACCTC 61.648 60.000 0.00 0.00 0.00 3.85
4753 5083 0.036010 CCACCATCTTCGCAACCTCT 60.036 55.000 0.00 0.00 0.00 3.69
4754 5084 1.081892 CACCATCTTCGCAACCTCTG 58.918 55.000 0.00 0.00 0.00 3.35
4755 5085 0.687354 ACCATCTTCGCAACCTCTGT 59.313 50.000 0.00 0.00 0.00 3.41
4756 5086 1.338200 ACCATCTTCGCAACCTCTGTC 60.338 52.381 0.00 0.00 0.00 3.51
4757 5087 0.994995 CATCTTCGCAACCTCTGTCG 59.005 55.000 0.00 0.00 0.00 4.35
4758 5088 0.737715 ATCTTCGCAACCTCTGTCGC 60.738 55.000 0.00 0.00 0.00 5.19
4759 5089 1.373497 CTTCGCAACCTCTGTCGCT 60.373 57.895 0.00 0.00 0.00 4.93
4760 5090 0.109272 CTTCGCAACCTCTGTCGCTA 60.109 55.000 0.00 0.00 0.00 4.26
4761 5091 0.388134 TTCGCAACCTCTGTCGCTAC 60.388 55.000 0.00 0.00 0.00 3.58
4762 5092 1.213013 CGCAACCTCTGTCGCTACT 59.787 57.895 0.00 0.00 0.00 2.57
4763 5093 0.798771 CGCAACCTCTGTCGCTACTC 60.799 60.000 0.00 0.00 0.00 2.59
4764 5094 0.458716 GCAACCTCTGTCGCTACTCC 60.459 60.000 0.00 0.00 0.00 3.85
4765 5095 1.178276 CAACCTCTGTCGCTACTCCT 58.822 55.000 0.00 0.00 0.00 3.69
4766 5096 2.366533 CAACCTCTGTCGCTACTCCTA 58.633 52.381 0.00 0.00 0.00 2.94
4767 5097 2.952978 CAACCTCTGTCGCTACTCCTAT 59.047 50.000 0.00 0.00 0.00 2.57
4768 5098 2.853705 ACCTCTGTCGCTACTCCTATC 58.146 52.381 0.00 0.00 0.00 2.08
4769 5099 2.440253 ACCTCTGTCGCTACTCCTATCT 59.560 50.000 0.00 0.00 0.00 1.98
4770 5100 3.647113 ACCTCTGTCGCTACTCCTATCTA 59.353 47.826 0.00 0.00 0.00 1.98
4771 5101 4.102838 ACCTCTGTCGCTACTCCTATCTAA 59.897 45.833 0.00 0.00 0.00 2.10
4772 5102 4.453136 CCTCTGTCGCTACTCCTATCTAAC 59.547 50.000 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.885502 GCTTTTGCAAACACCCGAG 58.114 52.632 12.39 6.66 46.58 4.63
69 71 8.169268 CCTAACAAAAGAAATACTACGAAGCTG 58.831 37.037 0.00 0.00 0.00 4.24
75 77 6.529125 TCTCGCCTAACAAAAGAAATACTACG 59.471 38.462 0.00 0.00 0.00 3.51
114 116 5.597813 GTCTGTTTGACACTTAGGTGATG 57.402 43.478 12.54 0.00 45.61 3.07
147 149 4.639078 TCATCCAGAGACACATCCAAAA 57.361 40.909 0.00 0.00 0.00 2.44
148 150 4.042062 AGTTCATCCAGAGACACATCCAAA 59.958 41.667 0.00 0.00 0.00 3.28
154 156 5.745312 AACATAGTTCATCCAGAGACACA 57.255 39.130 0.00 0.00 0.00 3.72
283 287 2.804931 GAATGCGCGGTTTGGCAC 60.805 61.111 8.83 0.00 42.76 5.01
297 301 5.406175 CGAGCAACAAATTTGATTGTGGAAT 59.594 36.000 24.64 9.73 42.49 3.01
305 309 6.801539 TTAGAGTCGAGCAACAAATTTGAT 57.198 33.333 24.64 10.35 0.00 2.57
306 310 6.427150 GTTTAGAGTCGAGCAACAAATTTGA 58.573 36.000 24.64 0.00 0.00 2.69
309 315 4.215613 GGGTTTAGAGTCGAGCAACAAATT 59.784 41.667 0.00 0.00 0.00 1.82
359 366 2.425143 TGAGAAATGATGGTCAGGCC 57.575 50.000 0.00 0.00 37.90 5.19
390 397 2.237392 AGAGTATTTCGGGCTTTGAGCT 59.763 45.455 0.00 0.00 41.99 4.09
395 413 7.110155 TGAAAATAGAGAGTATTTCGGGCTTT 58.890 34.615 0.00 0.00 35.15 3.51
414 432 4.990426 CGATCTGTTTTTGGGCTTGAAAAT 59.010 37.500 0.00 0.00 0.00 1.82
428 446 5.975693 TTGGGCTTAATTTCGATCTGTTT 57.024 34.783 0.00 0.00 0.00 2.83
429 447 5.622233 GCTTTGGGCTTAATTTCGATCTGTT 60.622 40.000 0.00 0.00 38.06 3.16
430 448 4.142381 GCTTTGGGCTTAATTTCGATCTGT 60.142 41.667 0.00 0.00 38.06 3.41
434 452 2.430694 GGGCTTTGGGCTTAATTTCGAT 59.569 45.455 0.00 0.00 41.46 3.59
435 453 1.822371 GGGCTTTGGGCTTAATTTCGA 59.178 47.619 0.00 0.00 41.46 3.71
461 479 0.814457 AAAACAACGTTCAGGCTGCA 59.186 45.000 10.34 0.00 0.00 4.41
462 480 1.921243 AAAAACAACGTTCAGGCTGC 58.079 45.000 10.34 0.00 0.00 5.25
468 486 4.092529 TGCGTACACTAAAAACAACGTTCA 59.907 37.500 0.00 0.00 33.16 3.18
504 524 6.239317 GGCTTCTCTTCTTTTGTATTTTGGGT 60.239 38.462 0.00 0.00 0.00 4.51
507 527 5.858581 CGGGCTTCTCTTCTTTTGTATTTTG 59.141 40.000 0.00 0.00 0.00 2.44
508 528 5.768164 TCGGGCTTCTCTTCTTTTGTATTTT 59.232 36.000 0.00 0.00 0.00 1.82
516 536 0.035915 GGCTCGGGCTTCTCTTCTTT 60.036 55.000 7.48 0.00 38.73 2.52
518 538 2.363172 GGGCTCGGGCTTCTCTTCT 61.363 63.158 7.48 0.00 38.73 2.85
519 539 2.188207 GGGCTCGGGCTTCTCTTC 59.812 66.667 7.48 0.00 38.73 2.87
578 600 4.358841 CATGGACAACCCGGGCCA 62.359 66.667 24.08 20.89 37.93 5.36
613 637 2.925706 TACCCAAGGTGCGCTCCA 60.926 61.111 28.68 5.56 36.19 3.86
675 700 1.165907 TGCTTTTGTCCACGAGCCAG 61.166 55.000 0.00 0.00 34.30 4.85
702 727 0.908198 ACTGGCAGATGACTCCTTCC 59.092 55.000 23.66 0.00 0.00 3.46
703 728 2.235898 AGAACTGGCAGATGACTCCTTC 59.764 50.000 23.66 11.57 0.00 3.46
704 729 2.264455 AGAACTGGCAGATGACTCCTT 58.736 47.619 23.66 1.37 0.00 3.36
757 795 2.262915 CCTGACGACCAGCCTGAC 59.737 66.667 0.00 0.00 41.57 3.51
918 958 4.958897 TGGGCGACGGGGGTTTTG 62.959 66.667 0.00 0.00 0.00 2.44
991 1060 3.872728 CGACGCCATCTCGACCGA 61.873 66.667 0.00 0.00 32.65 4.69
1367 1436 4.699522 GGAAGCCGAAGCCGTGGT 62.700 66.667 0.00 0.00 41.25 4.16
1369 1438 2.815647 GAGGAAGCCGAAGCCGTG 60.816 66.667 0.00 0.00 41.25 4.94
1374 1443 2.881352 GCGTCGAGGAAGCCGAAG 60.881 66.667 9.75 0.00 37.81 3.79
1375 1444 4.430765 GGCGTCGAGGAAGCCGAA 62.431 66.667 9.75 0.00 45.79 4.30
1510 1579 1.215647 CGTCCTTCTCCTTCCACCG 59.784 63.158 0.00 0.00 0.00 4.94
1910 1979 1.611556 ACCTTCCACTCCCCGGTAC 60.612 63.158 0.00 0.00 0.00 3.34
1911 1980 1.611261 CACCTTCCACTCCCCGGTA 60.611 63.158 0.00 0.00 0.00 4.02
1953 2022 2.725312 GCTCTCATCCGCCCAGACA 61.725 63.158 0.00 0.00 0.00 3.41
1967 2036 2.660064 CCGGTGGCCTTGTAGCTCT 61.660 63.158 3.32 0.00 0.00 4.09
1987 2056 1.111277 ACAGGTGTTTTCTTGGGCAC 58.889 50.000 0.00 0.00 0.00 5.01
2062 2131 0.693049 AGGTTGATGCCGAAGAGGTT 59.307 50.000 0.00 0.00 43.70 3.50
2070 2139 4.465512 GTGCGCAGGTTGATGCCG 62.466 66.667 12.22 0.00 43.49 5.69
2074 2143 2.434884 CCTCGTGCGCAGGTTGAT 60.435 61.111 27.39 0.00 0.00 2.57
2158 2227 0.747283 GGCAGCTCCCATGAGTGAAG 60.747 60.000 0.00 0.00 40.95 3.02
2192 2261 8.469200 ACAATGTGGATTATTGTTGATTACCTG 58.531 33.333 0.00 0.00 44.04 4.00
2216 2285 1.071228 AGCAACAGCACAGATGAGACA 59.929 47.619 0.00 0.00 0.00 3.41
2303 2375 2.558378 CAGCATACAGGATCACCACAG 58.442 52.381 0.00 0.00 38.94 3.66
2308 2380 0.933097 CGTGCAGCATACAGGATCAC 59.067 55.000 0.00 0.00 0.00 3.06
2314 2386 3.605461 GCATAATCACGTGCAGCATACAG 60.605 47.826 11.67 0.00 40.94 2.74
2324 2396 6.138088 CACATATTTGAGGCATAATCACGTG 58.862 40.000 9.94 9.94 0.00 4.49
2335 2407 4.535526 ACCAAAACCACATATTTGAGGC 57.464 40.909 0.00 0.00 38.50 4.70
2365 2439 8.676397 TGAATCAGGATCAGATCATTATAGGT 57.324 34.615 12.66 0.00 0.00 3.08
2390 2464 5.182001 GCAAACTATCTCACAGTCCAAACAT 59.818 40.000 0.00 0.00 0.00 2.71
2413 2487 3.710209 ACCAGGGAATATGCATAGAGC 57.290 47.619 12.79 3.86 45.96 4.09
2418 2492 4.889409 CAGTTACAACCAGGGAATATGCAT 59.111 41.667 3.79 3.79 0.00 3.96
2420 2494 4.096382 CACAGTTACAACCAGGGAATATGC 59.904 45.833 0.00 0.00 0.00 3.14
2427 2501 3.074412 GTGATCACAGTTACAACCAGGG 58.926 50.000 21.07 0.00 0.00 4.45
2428 2502 3.498397 GTGTGATCACAGTTACAACCAGG 59.502 47.826 28.54 0.00 42.74 4.45
2458 2532 7.669304 TCATTCCAATAAAATTCTCAGGTGACA 59.331 33.333 0.00 0.00 0.00 3.58
2477 2551 6.804295 CGATTACAACGGAATTTTTCATTCCA 59.196 34.615 12.91 0.00 45.97 3.53
2481 2555 6.972328 CCATCGATTACAACGGAATTTTTCAT 59.028 34.615 0.00 0.00 0.00 2.57
2492 2568 4.090354 ACACGTTAACCATCGATTACAACG 59.910 41.667 20.76 20.76 42.04 4.10
2495 2571 5.707931 TGTACACGTTAACCATCGATTACA 58.292 37.500 0.00 0.00 0.00 2.41
2496 2572 6.074676 GGATGTACACGTTAACCATCGATTAC 60.075 42.308 0.00 0.00 34.20 1.89
2505 2581 3.221964 ACGAGGATGTACACGTTAACC 57.778 47.619 0.00 0.00 35.47 2.85
2506 2582 7.969387 TTTATACGAGGATGTACACGTTAAC 57.031 36.000 13.50 0.00 39.59 2.01
2511 2587 6.913121 CTCATTTATACGAGGATGTACACG 57.087 41.667 0.00 0.00 0.00 4.49
2524 2600 5.306394 GGGGAACTACAGCCTCATTTATAC 58.694 45.833 0.00 0.00 0.00 1.47
2535 2631 2.125106 CTGCCGGGGAACTACAGC 60.125 66.667 2.18 0.00 0.00 4.40
2548 2644 4.372656 ACAGCGTCTATCTATTTTCTGCC 58.627 43.478 0.00 0.00 0.00 4.85
2560 2656 3.003897 GCTGCTTACTCTACAGCGTCTAT 59.996 47.826 0.00 0.00 46.38 1.98
2562 2658 1.133407 GCTGCTTACTCTACAGCGTCT 59.867 52.381 0.00 0.00 46.38 4.18
2597 2693 4.561105 GGCAGGAGCTGTGTAAGTATATC 58.439 47.826 0.00 0.00 41.70 1.63
2606 2702 2.353958 CATGGGCAGGAGCTGTGT 59.646 61.111 0.00 0.00 41.70 3.72
2611 2707 1.527844 CCTTAGCATGGGCAGGAGC 60.528 63.158 0.00 0.00 44.61 4.70
2612 2708 0.465097 CACCTTAGCATGGGCAGGAG 60.465 60.000 0.00 0.00 44.61 3.69
2613 2709 1.207488 ACACCTTAGCATGGGCAGGA 61.207 55.000 0.00 0.00 44.61 3.86
2620 2716 6.308766 GCTTTGTTAATTGACACCTTAGCATG 59.691 38.462 1.97 0.00 0.00 4.06
2639 2735 1.202806 TGGCTAGCACTGAAGCTTTGT 60.203 47.619 18.24 0.00 43.70 2.83
2642 2738 2.503895 AATGGCTAGCACTGAAGCTT 57.496 45.000 18.24 0.00 43.70 3.74
2647 2743 1.275010 TGACGAAATGGCTAGCACTGA 59.725 47.619 18.24 0.00 0.00 3.41
2657 2753 3.201726 ACGCAAATTCTGACGAAATGG 57.798 42.857 0.00 0.00 31.91 3.16
2662 2758 2.409012 TGCTTACGCAAATTCTGACGA 58.591 42.857 0.00 0.00 44.62 4.20
2686 2782 6.632834 CGATCGGTCCAAAATGATAATGAAAC 59.367 38.462 7.38 0.00 0.00 2.78
2703 2799 2.642139 TTTACTGGTGACGATCGGTC 57.358 50.000 20.98 14.44 46.27 4.79
2704 2800 2.888594 CATTTACTGGTGACGATCGGT 58.111 47.619 20.98 8.82 0.00 4.69
2705 2801 1.593006 GCATTTACTGGTGACGATCGG 59.407 52.381 20.98 2.40 0.00 4.18
2706 2802 2.267426 TGCATTTACTGGTGACGATCG 58.733 47.619 14.88 14.88 0.00 3.69
2707 2803 4.332543 TCAATGCATTTACTGGTGACGATC 59.667 41.667 9.83 0.00 0.00 3.69
2708 2804 4.260985 TCAATGCATTTACTGGTGACGAT 58.739 39.130 9.83 0.00 0.00 3.73
2709 2805 3.669536 TCAATGCATTTACTGGTGACGA 58.330 40.909 9.83 0.00 0.00 4.20
2710 2806 4.418013 TTCAATGCATTTACTGGTGACG 57.582 40.909 9.83 0.00 0.00 4.35
2711 2807 6.867816 TCATTTTCAATGCATTTACTGGTGAC 59.132 34.615 9.83 0.00 0.00 3.67
2712 2808 6.990798 TCATTTTCAATGCATTTACTGGTGA 58.009 32.000 9.83 7.53 0.00 4.02
2713 2809 7.837202 ATCATTTTCAATGCATTTACTGGTG 57.163 32.000 9.83 5.29 0.00 4.17
2714 2810 8.851541 AAATCATTTTCAATGCATTTACTGGT 57.148 26.923 9.83 0.00 0.00 4.00
2745 2841 2.276201 CGACGATGCAAGGATAACCAA 58.724 47.619 0.00 0.00 38.94 3.67
2746 2842 1.472552 CCGACGATGCAAGGATAACCA 60.473 52.381 0.00 0.00 38.94 3.67
2762 2867 9.543783 AAGTTAGATATAAAAAGATGGACCGAC 57.456 33.333 0.00 0.00 0.00 4.79
2786 2891 9.840427 AACGGTGAATTGAACATCTAAAATAAG 57.160 29.630 0.00 0.00 0.00 1.73
2787 2892 9.619316 CAACGGTGAATTGAACATCTAAAATAA 57.381 29.630 0.00 0.00 0.00 1.40
2789 2894 7.881142 TCAACGGTGAATTGAACATCTAAAAT 58.119 30.769 0.00 0.00 33.16 1.82
2807 2914 4.323417 TCTACAAAATCTGCATCAACGGT 58.677 39.130 0.00 0.00 0.00 4.83
2813 2920 8.922058 ACAATGAATTCTACAAAATCTGCATC 57.078 30.769 7.05 0.00 0.00 3.91
2861 2968 4.832248 TCATAGTTTCAACAGGCTGGTAG 58.168 43.478 20.34 7.54 0.00 3.18
2864 2971 3.942829 TCTCATAGTTTCAACAGGCTGG 58.057 45.455 20.34 1.44 0.00 4.85
2900 3007 7.615365 ACTGCATGGGTGAATTCTTTTCTATAA 59.385 33.333 7.05 0.00 0.00 0.98
2909 3021 3.719268 TGTACTGCATGGGTGAATTCT 57.281 42.857 7.05 0.00 0.00 2.40
2910 3022 3.505680 TGTTGTACTGCATGGGTGAATTC 59.494 43.478 0.00 0.00 0.00 2.17
2933 3045 9.693739 AAACCAATTCACATCCATATTACAGTA 57.306 29.630 0.00 0.00 0.00 2.74
2934 3046 8.593945 AAACCAATTCACATCCATATTACAGT 57.406 30.769 0.00 0.00 0.00 3.55
2935 3047 9.304731 CAAAACCAATTCACATCCATATTACAG 57.695 33.333 0.00 0.00 0.00 2.74
2936 3048 7.763528 GCAAAACCAATTCACATCCATATTACA 59.236 33.333 0.00 0.00 0.00 2.41
2937 3049 7.224557 GGCAAAACCAATTCACATCCATATTAC 59.775 37.037 0.00 0.00 38.86 1.89
2953 3065 4.993028 ACTACAGGAATAGGCAAAACCAA 58.007 39.130 0.00 0.00 43.14 3.67
2960 3072 3.197766 CCAACAGACTACAGGAATAGGCA 59.802 47.826 0.00 0.00 31.94 4.75
2961 3073 3.197983 ACCAACAGACTACAGGAATAGGC 59.802 47.826 0.00 0.00 0.00 3.93
2977 3089 0.179032 CAGTACCACTGCCACCAACA 60.179 55.000 0.00 0.00 39.62 3.33
2989 3101 7.067129 CAGTAGTTCTTGTCTATAGCAGTACCA 59.933 40.741 0.00 0.00 0.00 3.25
3005 3117 9.708092 GTAAACTGGAATACTTCAGTAGTTCTT 57.292 33.333 0.00 0.00 42.67 2.52
3006 3118 8.027771 CGTAAACTGGAATACTTCAGTAGTTCT 58.972 37.037 0.00 0.00 42.67 3.01
3080 3197 8.915654 GCCTAAATTGTAACACTTCAGAAATTG 58.084 33.333 0.00 0.00 0.00 2.32
3099 3216 9.067986 GCCTATTTTCTTATACACAGCCTAAAT 57.932 33.333 0.00 0.00 0.00 1.40
3112 3229 9.853177 AGCTGTAACATTAGCCTATTTTCTTAT 57.147 29.630 0.00 0.00 40.76 1.73
3116 3233 7.931948 TCCTAGCTGTAACATTAGCCTATTTTC 59.068 37.037 0.00 0.00 40.76 2.29
3130 3247 5.298347 ACAGTTGAAACTCCTAGCTGTAAC 58.702 41.667 0.00 0.00 37.08 2.50
3134 3251 7.436673 GTCATATACAGTTGAAACTCCTAGCTG 59.563 40.741 0.00 0.00 37.08 4.24
3172 3289 8.534954 TGGAAGTAGCAACTATGAAGTATACT 57.465 34.615 0.00 0.00 33.75 2.12
3173 3290 9.197694 CATGGAAGTAGCAACTATGAAGTATAC 57.802 37.037 0.00 0.00 33.75 1.47
3174 3291 9.143155 TCATGGAAGTAGCAACTATGAAGTATA 57.857 33.333 0.00 0.00 33.75 1.47
3175 3292 8.023021 TCATGGAAGTAGCAACTATGAAGTAT 57.977 34.615 0.00 0.00 33.75 2.12
3176 3293 7.418337 TCATGGAAGTAGCAACTATGAAGTA 57.582 36.000 0.00 0.00 33.75 2.24
3177 3294 6.299805 TCATGGAAGTAGCAACTATGAAGT 57.700 37.500 0.00 0.00 33.75 3.01
3178 3295 7.798596 ATTCATGGAAGTAGCAACTATGAAG 57.201 36.000 0.00 0.00 39.67 3.02
3179 3296 8.579850 AAATTCATGGAAGTAGCAACTATGAA 57.420 30.769 0.00 0.00 40.18 2.57
3180 3297 7.283127 GGAAATTCATGGAAGTAGCAACTATGA 59.717 37.037 0.00 0.00 33.75 2.15
3181 3298 7.284034 AGGAAATTCATGGAAGTAGCAACTATG 59.716 37.037 0.00 0.00 33.75 2.23
3182 3299 7.349598 AGGAAATTCATGGAAGTAGCAACTAT 58.650 34.615 0.00 0.00 33.75 2.12
3183 3300 6.721318 AGGAAATTCATGGAAGTAGCAACTA 58.279 36.000 0.00 0.00 33.75 2.24
3184 3301 5.574188 AGGAAATTCATGGAAGTAGCAACT 58.426 37.500 0.00 0.00 37.65 3.16
3185 3302 5.904362 AGGAAATTCATGGAAGTAGCAAC 57.096 39.130 0.00 0.00 0.00 4.17
3186 3303 8.593945 ATTAAGGAAATTCATGGAAGTAGCAA 57.406 30.769 0.00 0.00 0.00 3.91
3187 3304 9.693739 TTATTAAGGAAATTCATGGAAGTAGCA 57.306 29.630 0.00 0.00 0.00 3.49
3195 3312 9.586435 GGTGAACTTTATTAAGGAAATTCATGG 57.414 33.333 0.00 0.00 35.61 3.66
3205 3322 9.687210 GGTTGTTTTAGGTGAACTTTATTAAGG 57.313 33.333 0.00 0.00 35.61 2.69
3208 3325 9.411189 ACTGGTTGTTTTAGGTGAACTTTATTA 57.589 29.630 0.00 0.00 0.00 0.98
3209 3326 8.194769 CACTGGTTGTTTTAGGTGAACTTTATT 58.805 33.333 0.00 0.00 0.00 1.40
3210 3327 7.340999 ACACTGGTTGTTTTAGGTGAACTTTAT 59.659 33.333 0.00 0.00 33.09 1.40
3211 3328 6.660094 ACACTGGTTGTTTTAGGTGAACTTTA 59.340 34.615 0.00 0.00 33.09 1.85
3218 3335 6.687081 TTCTTACACTGGTTGTTTTAGGTG 57.313 37.500 0.00 0.00 39.91 4.00
3219 3336 7.891498 AATTCTTACACTGGTTGTTTTAGGT 57.109 32.000 0.00 0.00 39.91 3.08
3236 3353 9.453572 AGCAAGTTCAGTCATATCAAATTCTTA 57.546 29.630 0.00 0.00 0.00 2.10
3238 3355 7.066766 GGAGCAAGTTCAGTCATATCAAATTCT 59.933 37.037 0.00 0.00 0.00 2.40
3245 3362 5.121811 ACATGGAGCAAGTTCAGTCATATC 58.878 41.667 0.00 0.00 0.00 1.63
3248 3365 3.430042 ACATGGAGCAAGTTCAGTCAT 57.570 42.857 0.00 0.00 0.00 3.06
3292 3409 9.961265 CAATTCTGAAATATGCATACAGTGAAT 57.039 29.630 8.99 11.94 0.00 2.57
3326 3443 3.581265 TTTGCCATGGATGCAGAGATA 57.419 42.857 18.40 0.00 40.35 1.98
3337 3454 1.202557 CGGAATCCCATTTTGCCATGG 60.203 52.381 7.63 7.63 43.26 3.66
3348 3465 0.617535 TCCAGAGAAGCGGAATCCCA 60.618 55.000 0.00 0.00 0.00 4.37
3356 3473 2.522836 AGCATATGTCCAGAGAAGCG 57.477 50.000 4.29 0.00 0.00 4.68
3372 3489 8.362639 CCCTAACGTAAAGAGGTAAATATAGCA 58.637 37.037 0.00 0.00 31.82 3.49
3373 3490 7.816513 CCCCTAACGTAAAGAGGTAAATATAGC 59.183 40.741 0.00 0.00 0.00 2.97
3374 3491 7.816513 GCCCCTAACGTAAAGAGGTAAATATAG 59.183 40.741 0.00 0.00 0.00 1.31
3376 3493 6.328410 AGCCCCTAACGTAAAGAGGTAAATAT 59.672 38.462 0.00 0.00 0.00 1.28
3377 3494 5.662657 AGCCCCTAACGTAAAGAGGTAAATA 59.337 40.000 0.00 0.00 0.00 1.40
3378 3495 4.472470 AGCCCCTAACGTAAAGAGGTAAAT 59.528 41.667 0.00 0.00 0.00 1.40
3379 3496 3.840078 AGCCCCTAACGTAAAGAGGTAAA 59.160 43.478 0.00 0.00 0.00 2.01
3382 3499 1.553704 CAGCCCCTAACGTAAAGAGGT 59.446 52.381 0.00 0.00 0.00 3.85
3384 3501 4.460948 TTACAGCCCCTAACGTAAAGAG 57.539 45.455 0.00 0.00 0.00 2.85
3385 3502 4.467082 TGATTACAGCCCCTAACGTAAAGA 59.533 41.667 0.00 0.00 0.00 2.52
3386 3503 4.761975 TGATTACAGCCCCTAACGTAAAG 58.238 43.478 0.00 0.00 0.00 1.85
3387 3504 4.467082 TCTGATTACAGCCCCTAACGTAAA 59.533 41.667 0.00 0.00 43.17 2.01
3389 3506 3.634504 TCTGATTACAGCCCCTAACGTA 58.365 45.455 0.00 0.00 43.17 3.57
3390 3507 2.463752 TCTGATTACAGCCCCTAACGT 58.536 47.619 0.00 0.00 43.17 3.99
3391 3508 3.753294 ATCTGATTACAGCCCCTAACG 57.247 47.619 0.00 0.00 43.17 3.18
3392 3509 4.347000 TGGTATCTGATTACAGCCCCTAAC 59.653 45.833 0.00 0.00 43.17 2.34
3393 3510 4.562767 TGGTATCTGATTACAGCCCCTAA 58.437 43.478 0.00 0.00 43.17 2.69
3394 3511 4.207698 TGGTATCTGATTACAGCCCCTA 57.792 45.455 0.00 0.00 43.17 3.53
3395 3512 3.060479 TGGTATCTGATTACAGCCCCT 57.940 47.619 0.00 0.00 43.17 4.79
3397 3514 4.508662 GCTATGGTATCTGATTACAGCCC 58.491 47.826 0.00 0.00 43.17 5.19
3398 3515 4.177026 CGCTATGGTATCTGATTACAGCC 58.823 47.826 0.00 0.00 43.17 4.85
3399 3516 4.082190 TCCGCTATGGTATCTGATTACAGC 60.082 45.833 0.00 0.00 40.36 4.40
3400 3517 5.644977 TCCGCTATGGTATCTGATTACAG 57.355 43.478 0.00 0.00 41.18 2.74
3401 3518 5.952347 AGATCCGCTATGGTATCTGATTACA 59.048 40.000 0.00 0.00 39.52 2.41
3402 3519 6.458232 AGATCCGCTATGGTATCTGATTAC 57.542 41.667 0.00 0.00 39.52 1.89
3403 3520 6.546403 GGTAGATCCGCTATGGTATCTGATTA 59.454 42.308 0.00 0.00 36.17 1.75
3404 3521 5.361285 GGTAGATCCGCTATGGTATCTGATT 59.639 44.000 0.00 0.00 36.17 2.57
3405 3522 4.890581 GGTAGATCCGCTATGGTATCTGAT 59.109 45.833 0.00 0.00 36.17 2.90
3406 3523 4.018324 AGGTAGATCCGCTATGGTATCTGA 60.018 45.833 0.00 0.00 41.99 3.27
3407 3524 4.097135 CAGGTAGATCCGCTATGGTATCTG 59.903 50.000 0.00 0.00 41.99 2.90
3408 3525 4.274147 CAGGTAGATCCGCTATGGTATCT 58.726 47.826 0.00 0.00 41.99 1.98
3409 3526 3.181485 GCAGGTAGATCCGCTATGGTATC 60.181 52.174 0.00 0.00 41.99 2.24
3410 3527 2.761208 GCAGGTAGATCCGCTATGGTAT 59.239 50.000 0.00 0.00 41.99 2.73
3413 3530 1.261480 AGCAGGTAGATCCGCTATGG 58.739 55.000 0.00 0.00 41.52 2.74
3419 3536 4.592485 AACATAGAAGCAGGTAGATCCG 57.408 45.455 0.00 0.00 41.99 4.18
3421 3538 7.928706 ACAACATAACATAGAAGCAGGTAGATC 59.071 37.037 0.00 0.00 0.00 2.75
3499 3616 8.064447 TGTTGTTGTTGAAAGATACTACGTAC 57.936 34.615 0.00 0.00 0.00 3.67
3500 3617 8.645730 TTGTTGTTGTTGAAAGATACTACGTA 57.354 30.769 0.00 0.00 0.00 3.57
3501 3618 7.542534 TTGTTGTTGTTGAAAGATACTACGT 57.457 32.000 0.00 0.00 0.00 3.57
3502 3619 8.829514 TTTTGTTGTTGTTGAAAGATACTACG 57.170 30.769 0.00 0.00 0.00 3.51
3519 3636 3.432046 CCATGCAAACCCTCTTTTGTTGT 60.432 43.478 0.00 0.00 38.51 3.32
3523 3640 4.806640 ATACCATGCAAACCCTCTTTTG 57.193 40.909 0.00 0.00 39.15 2.44
3528 3645 4.938226 GCTAGATATACCATGCAAACCCTC 59.062 45.833 0.00 0.00 0.00 4.30
3551 3668 4.142359 CCAGTTACCACTACAGCTAGTCAG 60.142 50.000 0.00 0.00 30.03 3.51
3554 3671 3.775910 ACCAGTTACCACTACAGCTAGT 58.224 45.455 0.00 0.00 33.01 2.57
3555 3672 5.163540 CCTTACCAGTTACCACTACAGCTAG 60.164 48.000 0.00 0.00 0.00 3.42
3556 3673 4.708421 CCTTACCAGTTACCACTACAGCTA 59.292 45.833 0.00 0.00 0.00 3.32
3559 3676 3.836562 ACCCTTACCAGTTACCACTACAG 59.163 47.826 0.00 0.00 0.00 2.74
3561 3678 4.040829 ACAACCCTTACCAGTTACCACTAC 59.959 45.833 0.00 0.00 0.00 2.73
3562 3679 4.233729 ACAACCCTTACCAGTTACCACTA 58.766 43.478 0.00 0.00 0.00 2.74
3563 3680 3.050835 ACAACCCTTACCAGTTACCACT 58.949 45.455 0.00 0.00 0.00 4.00
3564 3681 3.497103 ACAACCCTTACCAGTTACCAC 57.503 47.619 0.00 0.00 0.00 4.16
3565 3682 4.523168 AAACAACCCTTACCAGTTACCA 57.477 40.909 0.00 0.00 0.00 3.25
3566 3683 5.135383 AGAAAACAACCCTTACCAGTTACC 58.865 41.667 0.00 0.00 0.00 2.85
3567 3684 6.704289 AAGAAAACAACCCTTACCAGTTAC 57.296 37.500 0.00 0.00 0.00 2.50
3568 3685 7.415429 CGAAAAGAAAACAACCCTTACCAGTTA 60.415 37.037 0.00 0.00 0.00 2.24
3569 3686 6.614694 AAAAGAAAACAACCCTTACCAGTT 57.385 33.333 0.00 0.00 0.00 3.16
3570 3687 5.163591 CGAAAAGAAAACAACCCTTACCAGT 60.164 40.000 0.00 0.00 0.00 4.00
3571 3688 5.278604 CGAAAAGAAAACAACCCTTACCAG 58.721 41.667 0.00 0.00 0.00 4.00
3572 3689 4.098196 CCGAAAAGAAAACAACCCTTACCA 59.902 41.667 0.00 0.00 0.00 3.25
3573 3690 4.338964 TCCGAAAAGAAAACAACCCTTACC 59.661 41.667 0.00 0.00 0.00 2.85
3574 3691 5.503662 TCCGAAAAGAAAACAACCCTTAC 57.496 39.130 0.00 0.00 0.00 2.34
3575 3692 5.450826 GCTTCCGAAAAGAAAACAACCCTTA 60.451 40.000 2.15 0.00 0.00 2.69
3576 3693 4.679639 GCTTCCGAAAAGAAAACAACCCTT 60.680 41.667 2.15 0.00 0.00 3.95
3577 3694 3.181479 GCTTCCGAAAAGAAAACAACCCT 60.181 43.478 2.15 0.00 0.00 4.34
3578 3695 3.120792 GCTTCCGAAAAGAAAACAACCC 58.879 45.455 2.15 0.00 0.00 4.11
3579 3696 3.776340 TGCTTCCGAAAAGAAAACAACC 58.224 40.909 2.15 0.00 0.00 3.77
3580 3697 4.032445 GGTTGCTTCCGAAAAGAAAACAAC 59.968 41.667 2.38 9.60 39.66 3.32
3581 3698 4.177783 GGTTGCTTCCGAAAAGAAAACAA 58.822 39.130 2.38 0.00 0.00 2.83
3593 3710 4.917415 CAGAATTAACTTTGGTTGCTTCCG 59.083 41.667 0.00 0.00 36.92 4.30
3669 3849 8.975410 TTCAATGTTGAAAGAAGAATAGCATG 57.025 30.769 5.75 0.00 43.62 4.06
3681 3861 5.284079 CAGGAACACCTTCAATGTTGAAAG 58.716 41.667 9.24 6.17 45.61 2.62
3698 3878 4.990288 GTCGGTCTGACCAGGAAC 57.010 61.111 25.42 13.71 42.04 3.62
3707 3887 2.726850 TTCACGCGACTGTCGGTCTG 62.727 60.000 28.92 14.80 42.44 3.51
3714 3894 1.660575 CCTTCGTTCACGCGACTGT 60.661 57.895 15.93 0.00 40.85 3.55
3719 3899 2.430921 AGAGCCTTCGTTCACGCG 60.431 61.111 3.53 3.53 39.60 6.01
3721 3901 0.946221 AAGCAGAGCCTTCGTTCACG 60.946 55.000 0.00 0.00 41.45 4.35
3727 3907 1.018226 CCACAGAAGCAGAGCCTTCG 61.018 60.000 0.00 0.00 44.56 3.79
3730 3910 1.776975 AAGCCACAGAAGCAGAGCCT 61.777 55.000 0.00 0.00 0.00 4.58
3735 3915 3.603532 TCAATAGAAGCCACAGAAGCAG 58.396 45.455 0.00 0.00 0.00 4.24
3753 3933 0.617535 TCAATCTCGGCCCCTCTCAA 60.618 55.000 0.00 0.00 0.00 3.02
3808 3988 1.942657 CAGAGGCAATGTGGATAACCG 59.057 52.381 0.00 0.00 39.42 4.44
3844 4024 4.751767 AATGGAAGACAGACTCATCTCC 57.248 45.455 0.00 0.00 30.42 3.71
3870 4050 0.392193 ATGAAGGACAGCGGCTCAAG 60.392 55.000 0.00 0.00 0.00 3.02
3884 4064 9.469807 CTATTACAAGCTGTAGTAGGAATGAAG 57.530 37.037 13.33 0.00 38.63 3.02
3886 4066 8.414003 CACTATTACAAGCTGTAGTAGGAATGA 58.586 37.037 19.81 0.17 43.32 2.57
3891 4071 8.773404 AAAACACTATTACAAGCTGTAGTAGG 57.227 34.615 19.81 14.49 43.32 3.18
3916 4096 9.616156 TGTTACAAGGTGTGTAGATTCTAAAAA 57.384 29.630 0.00 0.00 43.61 1.94
3917 4097 9.268268 CTGTTACAAGGTGTGTAGATTCTAAAA 57.732 33.333 0.00 0.00 43.61 1.52
3918 4098 8.426489 ACTGTTACAAGGTGTGTAGATTCTAAA 58.574 33.333 0.00 0.00 43.61 1.85
3919 4099 7.959175 ACTGTTACAAGGTGTGTAGATTCTAA 58.041 34.615 0.00 0.00 43.61 2.10
3920 4100 7.534723 ACTGTTACAAGGTGTGTAGATTCTA 57.465 36.000 0.00 0.00 43.61 2.10
3921 4101 6.420913 ACTGTTACAAGGTGTGTAGATTCT 57.579 37.500 0.00 0.00 43.61 2.40
3922 4102 6.482308 ACAACTGTTACAAGGTGTGTAGATTC 59.518 38.462 5.07 0.00 46.36 2.52
3923 4103 6.354130 ACAACTGTTACAAGGTGTGTAGATT 58.646 36.000 5.07 0.00 46.36 2.40
3924 4104 5.925509 ACAACTGTTACAAGGTGTGTAGAT 58.074 37.500 5.07 0.00 46.36 1.98
3925 4105 5.347620 ACAACTGTTACAAGGTGTGTAGA 57.652 39.130 5.07 0.00 46.36 2.59
3931 4111 3.541632 AGGACACAACTGTTACAAGGTG 58.458 45.455 8.48 8.48 40.91 4.00
3932 4112 3.433173 GGAGGACACAACTGTTACAAGGT 60.433 47.826 0.00 0.00 0.00 3.50
3933 4113 3.139077 GGAGGACACAACTGTTACAAGG 58.861 50.000 0.00 0.00 0.00 3.61
3934 4114 4.073293 AGGAGGACACAACTGTTACAAG 57.927 45.455 0.00 0.00 0.00 3.16
3935 4115 4.448210 GAAGGAGGACACAACTGTTACAA 58.552 43.478 0.00 0.00 0.00 2.41
3936 4116 3.181458 GGAAGGAGGACACAACTGTTACA 60.181 47.826 0.00 0.00 0.00 2.41
3937 4117 3.181458 TGGAAGGAGGACACAACTGTTAC 60.181 47.826 0.00 0.00 0.00 2.50
3938 4118 3.042682 TGGAAGGAGGACACAACTGTTA 58.957 45.455 0.00 0.00 0.00 2.41
3939 4119 1.843851 TGGAAGGAGGACACAACTGTT 59.156 47.619 0.00 0.00 0.00 3.16
3940 4120 1.141053 GTGGAAGGAGGACACAACTGT 59.859 52.381 0.00 0.00 35.30 3.55
3946 4126 2.222027 CAAACTGTGGAAGGAGGACAC 58.778 52.381 0.00 0.00 35.75 3.67
4028 4214 0.176910 GCTGGTCTTCACCTAGGAGC 59.823 60.000 17.98 7.48 44.17 4.70
4127 4313 0.947244 CCTGAAGTGCCAACAGACAC 59.053 55.000 0.00 0.00 37.05 3.67
4279 4465 5.381174 TTGGAATCTGATGAAGCACAAAG 57.619 39.130 0.00 0.00 0.00 2.77
4322 4513 8.925233 ACATCAATGTGTGAGGAAGAGGTTCC 62.925 46.154 0.00 0.00 45.20 3.62
4325 4516 3.328931 ACATCAATGTGTGAGGAAGAGGT 59.671 43.478 0.00 0.00 40.61 3.85
4329 4520 5.122869 CCAGTTACATCAATGTGTGAGGAAG 59.877 44.000 5.89 0.00 40.61 3.46
4336 4527 7.665559 AGTTATCAACCAGTTACATCAATGTGT 59.334 33.333 5.89 0.00 41.89 3.72
4352 4543 1.818221 CGCGCGCCTAGTTATCAACC 61.818 60.000 27.72 0.00 0.00 3.77
4354 4545 2.235016 GCGCGCGCCTAGTTATCAA 61.235 57.895 42.83 0.00 34.56 2.57
4378 4569 3.757248 ATTGGATGGTCGCGGAGGC 62.757 63.158 6.13 0.00 0.00 4.70
4379 4570 0.105964 TAATTGGATGGTCGCGGAGG 59.894 55.000 6.13 0.00 0.00 4.30
4380 4571 1.502231 CTAATTGGATGGTCGCGGAG 58.498 55.000 6.13 0.00 0.00 4.63
4381 4572 0.531974 GCTAATTGGATGGTCGCGGA 60.532 55.000 6.13 0.00 0.00 5.54
4382 4573 1.507141 GGCTAATTGGATGGTCGCGG 61.507 60.000 6.13 0.00 0.00 6.46
4383 4574 0.532862 AGGCTAATTGGATGGTCGCG 60.533 55.000 0.00 0.00 0.00 5.87
4384 4575 1.680338 AAGGCTAATTGGATGGTCGC 58.320 50.000 0.00 0.00 0.00 5.19
4385 4576 3.278574 TCAAAGGCTAATTGGATGGTCG 58.721 45.455 0.00 0.00 0.00 4.79
4386 4577 4.023707 CGATCAAAGGCTAATTGGATGGTC 60.024 45.833 0.00 0.00 0.00 4.02
4387 4578 3.885297 CGATCAAAGGCTAATTGGATGGT 59.115 43.478 0.00 0.00 0.00 3.55
4388 4579 3.885297 ACGATCAAAGGCTAATTGGATGG 59.115 43.478 0.00 0.00 0.00 3.51
4389 4580 4.790766 GCACGATCAAAGGCTAATTGGATG 60.791 45.833 0.00 0.00 0.00 3.51
4390 4581 3.316308 GCACGATCAAAGGCTAATTGGAT 59.684 43.478 0.00 0.00 0.00 3.41
4391 4582 2.682856 GCACGATCAAAGGCTAATTGGA 59.317 45.455 0.00 0.00 0.00 3.53
4392 4583 2.539547 CGCACGATCAAAGGCTAATTGG 60.540 50.000 0.00 0.00 0.00 3.16
4393 4584 2.539547 CCGCACGATCAAAGGCTAATTG 60.540 50.000 0.00 0.00 0.00 2.32
4394 4585 1.670811 CCGCACGATCAAAGGCTAATT 59.329 47.619 0.00 0.00 0.00 1.40
4395 4586 1.299541 CCGCACGATCAAAGGCTAAT 58.700 50.000 0.00 0.00 0.00 1.73
4396 4587 0.036765 ACCGCACGATCAAAGGCTAA 60.037 50.000 0.00 0.00 0.00 3.09
4408 4599 1.423845 GGTTATTGAGCACCGCACG 59.576 57.895 0.00 0.00 0.00 5.34
4431 4622 0.323360 AAAGTGCCTGTGTGTGTGGT 60.323 50.000 0.00 0.00 0.00 4.16
4443 4634 1.658409 GCTCACGTTGCAAAGTGCC 60.658 57.895 32.39 23.44 44.23 5.01
4456 4647 0.110056 CGTCTTGCAACATGGCTCAC 60.110 55.000 0.00 0.00 34.04 3.51
4475 4666 2.404789 CATGTGTTGCGATCGGCC 59.595 61.111 18.30 0.98 42.61 6.13
4476 4667 2.277501 GCATGTGTTGCGATCGGC 60.278 61.111 18.30 9.85 42.54 5.54
4526 4717 3.866582 CGAGATCCAGCCCCCACC 61.867 72.222 0.00 0.00 0.00 4.61
4529 4720 3.543536 GATGCGAGATCCAGCCCCC 62.544 68.421 7.44 0.00 0.00 5.40
4560 4751 0.735978 CGACCTTGTAGCATCACGCA 60.736 55.000 0.00 0.00 46.13 5.24
4561 4752 0.457853 TCGACCTTGTAGCATCACGC 60.458 55.000 0.00 0.00 42.91 5.34
4563 4754 2.094700 TCAGTCGACCTTGTAGCATCAC 60.095 50.000 13.01 0.00 0.00 3.06
4573 4903 0.464036 TTGCAGTGTCAGTCGACCTT 59.536 50.000 13.01 0.00 41.85 3.50
4635 4965 0.470268 AGAGGCCGGGAGTATTCCTC 60.470 60.000 12.64 12.64 43.49 3.71
4636 4966 0.760945 CAGAGGCCGGGAGTATTCCT 60.761 60.000 2.18 0.00 43.49 3.36
4637 4967 1.749033 CAGAGGCCGGGAGTATTCC 59.251 63.158 2.18 0.00 43.23 3.01
4638 4968 1.069935 GCAGAGGCCGGGAGTATTC 59.930 63.158 2.18 0.00 0.00 1.75
4639 4969 1.056700 ATGCAGAGGCCGGGAGTATT 61.057 55.000 2.18 0.00 40.13 1.89
4640 4970 1.460305 ATGCAGAGGCCGGGAGTAT 60.460 57.895 2.18 0.00 40.13 2.12
4641 4971 2.041922 ATGCAGAGGCCGGGAGTA 60.042 61.111 2.18 0.00 40.13 2.59
4642 4972 3.474570 GATGCAGAGGCCGGGAGT 61.475 66.667 2.18 0.00 40.13 3.85
4643 4973 3.160047 AGATGCAGAGGCCGGGAG 61.160 66.667 2.18 0.00 40.13 4.30
4644 4974 3.473647 CAGATGCAGAGGCCGGGA 61.474 66.667 2.18 0.00 40.13 5.14
4645 4975 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
4646 4976 3.746949 GACCAGATGCAGAGGCCGG 62.747 68.421 0.00 0.00 40.13 6.13
4647 4977 2.202987 GACCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
4648 4978 2.037620 ATCGACCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
4649 4979 1.445095 ATCGACCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
4657 4987 0.319900 GCCGTATGCATCGACCAGAT 60.320 55.000 16.69 0.00 41.01 2.90
4658 4988 1.067416 GCCGTATGCATCGACCAGA 59.933 57.895 16.69 0.00 40.77 3.86
4659 4989 1.956170 GGCCGTATGCATCGACCAG 60.956 63.158 16.69 1.29 43.89 4.00
4660 4990 2.108157 GGCCGTATGCATCGACCA 59.892 61.111 16.69 0.00 43.89 4.02
4661 4991 2.108157 TGGCCGTATGCATCGACC 59.892 61.111 16.69 15.28 43.89 4.79
4662 4992 0.810031 AAGTGGCCGTATGCATCGAC 60.810 55.000 16.69 5.03 43.89 4.20
4663 4993 0.107897 AAAGTGGCCGTATGCATCGA 60.108 50.000 16.69 0.00 43.89 3.59
4664 4994 1.577468 TAAAGTGGCCGTATGCATCG 58.423 50.000 0.19 7.03 43.89 3.84
4665 4995 5.682943 TTAATAAAGTGGCCGTATGCATC 57.317 39.130 0.19 0.00 43.89 3.91
4666 4996 6.648879 AATTAATAAAGTGGCCGTATGCAT 57.351 33.333 3.79 3.79 43.89 3.96
4667 4997 7.753309 ATAATTAATAAAGTGGCCGTATGCA 57.247 32.000 0.00 0.00 43.89 3.96
4668 4998 9.769093 CTAATAATTAATAAAGTGGCCGTATGC 57.231 33.333 0.00 0.00 40.16 3.14
4669 4999 9.769093 GCTAATAATTAATAAAGTGGCCGTATG 57.231 33.333 0.00 0.00 0.00 2.39
4670 5000 8.662141 CGCTAATAATTAATAAAGTGGCCGTAT 58.338 33.333 0.00 0.00 0.00 3.06
4671 5001 7.360269 GCGCTAATAATTAATAAAGTGGCCGTA 60.360 37.037 0.00 0.00 0.00 4.02
4672 5002 6.567132 GCGCTAATAATTAATAAAGTGGCCGT 60.567 38.462 0.00 0.00 0.00 5.68
4673 5003 5.793457 GCGCTAATAATTAATAAAGTGGCCG 59.207 40.000 0.00 0.00 0.00 6.13
4674 5004 6.674066 TGCGCTAATAATTAATAAAGTGGCC 58.326 36.000 9.73 0.00 0.00 5.36
4675 5005 8.568732 TTTGCGCTAATAATTAATAAAGTGGC 57.431 30.769 9.73 0.00 0.00 5.01
4684 5014 9.909644 TTTGTAAGGTTTTGCGCTAATAATTAA 57.090 25.926 9.73 0.00 0.00 1.40
4685 5015 9.562583 CTTTGTAAGGTTTTGCGCTAATAATTA 57.437 29.630 9.73 4.07 0.00 1.40
4686 5016 8.085909 ACTTTGTAAGGTTTTGCGCTAATAATT 58.914 29.630 9.73 5.04 0.00 1.40
4687 5017 7.599171 ACTTTGTAAGGTTTTGCGCTAATAAT 58.401 30.769 9.73 0.00 0.00 1.28
4688 5018 6.972722 ACTTTGTAAGGTTTTGCGCTAATAA 58.027 32.000 9.73 0.00 0.00 1.40
4689 5019 6.563222 ACTTTGTAAGGTTTTGCGCTAATA 57.437 33.333 9.73 0.00 0.00 0.98
4690 5020 5.447624 ACTTTGTAAGGTTTTGCGCTAAT 57.552 34.783 9.73 0.00 0.00 1.73
4691 5021 4.553156 CGACTTTGTAAGGTTTTGCGCTAA 60.553 41.667 9.73 3.97 0.00 3.09
4692 5022 3.059461 CGACTTTGTAAGGTTTTGCGCTA 60.059 43.478 9.73 0.00 0.00 4.26
4693 5023 2.286772 CGACTTTGTAAGGTTTTGCGCT 60.287 45.455 9.73 0.00 0.00 5.92
4694 5024 2.041244 CGACTTTGTAAGGTTTTGCGC 58.959 47.619 0.00 0.00 0.00 6.09
4695 5025 3.328237 ACGACTTTGTAAGGTTTTGCG 57.672 42.857 0.00 0.00 0.00 4.85
4696 5026 5.159399 TGTACGACTTTGTAAGGTTTTGC 57.841 39.130 0.00 0.00 0.00 3.68
4697 5027 6.544622 TGTTGTACGACTTTGTAAGGTTTTG 58.455 36.000 14.38 0.00 0.00 2.44
4698 5028 6.372381 ACTGTTGTACGACTTTGTAAGGTTTT 59.628 34.615 14.38 0.00 0.00 2.43
4699 5029 5.876460 ACTGTTGTACGACTTTGTAAGGTTT 59.124 36.000 14.38 0.00 0.00 3.27
4700 5030 5.422145 ACTGTTGTACGACTTTGTAAGGTT 58.578 37.500 14.38 0.00 0.00 3.50
4701 5031 5.014808 ACTGTTGTACGACTTTGTAAGGT 57.985 39.130 14.38 0.00 0.00 3.50
4702 5032 6.919662 TCTTACTGTTGTACGACTTTGTAAGG 59.080 38.462 28.76 20.15 37.36 2.69
4703 5033 7.096312 GGTCTTACTGTTGTACGACTTTGTAAG 60.096 40.741 26.64 26.64 43.31 2.34
4704 5034 6.697019 GGTCTTACTGTTGTACGACTTTGTAA 59.303 38.462 14.38 16.43 43.31 2.41
4705 5035 6.183360 TGGTCTTACTGTTGTACGACTTTGTA 60.183 38.462 14.38 11.16 43.31 2.41
4706 5036 5.045872 GGTCTTACTGTTGTACGACTTTGT 58.954 41.667 14.38 12.01 43.31 2.83
4707 5037 5.045215 TGGTCTTACTGTTGTACGACTTTG 58.955 41.667 14.38 7.24 43.31 2.77
4708 5038 5.266733 TGGTCTTACTGTTGTACGACTTT 57.733 39.130 14.38 3.93 43.31 2.66
4709 5039 4.924305 TGGTCTTACTGTTGTACGACTT 57.076 40.909 14.38 4.26 43.31 3.01
4710 5040 4.924305 TTGGTCTTACTGTTGTACGACT 57.076 40.909 14.38 0.00 43.31 4.18
4711 5041 4.084693 GCTTTGGTCTTACTGTTGTACGAC 60.085 45.833 6.27 6.27 43.16 4.34
4712 5042 4.053295 GCTTTGGTCTTACTGTTGTACGA 58.947 43.478 0.00 0.00 0.00 3.43
4713 5043 3.185797 GGCTTTGGTCTTACTGTTGTACG 59.814 47.826 0.00 0.00 0.00 3.67
4714 5044 4.024302 GTGGCTTTGGTCTTACTGTTGTAC 60.024 45.833 0.00 0.00 0.00 2.90
4715 5045 4.131596 GTGGCTTTGGTCTTACTGTTGTA 58.868 43.478 0.00 0.00 0.00 2.41
4716 5046 2.949644 GTGGCTTTGGTCTTACTGTTGT 59.050 45.455 0.00 0.00 0.00 3.32
4717 5047 2.293399 GGTGGCTTTGGTCTTACTGTTG 59.707 50.000 0.00 0.00 0.00 3.33
4718 5048 2.092103 TGGTGGCTTTGGTCTTACTGTT 60.092 45.455 0.00 0.00 0.00 3.16
4719 5049 1.493022 TGGTGGCTTTGGTCTTACTGT 59.507 47.619 0.00 0.00 0.00 3.55
4720 5050 2.270352 TGGTGGCTTTGGTCTTACTG 57.730 50.000 0.00 0.00 0.00 2.74
4721 5051 2.644798 AGATGGTGGCTTTGGTCTTACT 59.355 45.455 0.00 0.00 0.00 2.24
4722 5052 3.073274 AGATGGTGGCTTTGGTCTTAC 57.927 47.619 0.00 0.00 0.00 2.34
4723 5053 3.686016 GAAGATGGTGGCTTTGGTCTTA 58.314 45.455 0.00 0.00 0.00 2.10
4724 5054 2.519013 GAAGATGGTGGCTTTGGTCTT 58.481 47.619 0.00 0.00 0.00 3.01
4725 5055 1.611673 CGAAGATGGTGGCTTTGGTCT 60.612 52.381 0.00 0.00 0.00 3.85
4726 5056 0.804989 CGAAGATGGTGGCTTTGGTC 59.195 55.000 0.00 0.00 0.00 4.02
4727 5057 1.244019 GCGAAGATGGTGGCTTTGGT 61.244 55.000 0.00 0.00 0.00 3.67
4728 5058 1.243342 TGCGAAGATGGTGGCTTTGG 61.243 55.000 0.00 0.00 0.00 3.28
4729 5059 0.597568 TTGCGAAGATGGTGGCTTTG 59.402 50.000 0.00 0.00 0.00 2.77
4730 5060 0.598065 GTTGCGAAGATGGTGGCTTT 59.402 50.000 0.00 0.00 0.00 3.51
4731 5061 1.244019 GGTTGCGAAGATGGTGGCTT 61.244 55.000 0.00 0.00 0.00 4.35
4732 5062 1.675641 GGTTGCGAAGATGGTGGCT 60.676 57.895 0.00 0.00 0.00 4.75
4733 5063 1.648467 GAGGTTGCGAAGATGGTGGC 61.648 60.000 0.00 0.00 0.00 5.01
4734 5064 0.036010 AGAGGTTGCGAAGATGGTGG 60.036 55.000 0.00 0.00 0.00 4.61
4735 5065 1.081892 CAGAGGTTGCGAAGATGGTG 58.918 55.000 0.00 0.00 0.00 4.17
4736 5066 0.687354 ACAGAGGTTGCGAAGATGGT 59.313 50.000 0.00 0.00 0.00 3.55
4737 5067 1.363744 GACAGAGGTTGCGAAGATGG 58.636 55.000 0.00 0.00 0.00 3.51
4738 5068 0.994995 CGACAGAGGTTGCGAAGATG 59.005 55.000 0.00 0.00 0.00 2.90
4739 5069 0.737715 GCGACAGAGGTTGCGAAGAT 60.738 55.000 0.00 0.00 44.12 2.40
4740 5070 1.372997 GCGACAGAGGTTGCGAAGA 60.373 57.895 0.00 0.00 44.12 2.87
4741 5071 3.159984 GCGACAGAGGTTGCGAAG 58.840 61.111 0.00 0.00 44.12 3.79
4746 5076 1.178276 AGGAGTAGCGACAGAGGTTG 58.822 55.000 0.00 0.00 0.00 3.77
4747 5077 2.803030 TAGGAGTAGCGACAGAGGTT 57.197 50.000 0.00 0.00 0.00 3.50
4748 5078 2.440253 AGATAGGAGTAGCGACAGAGGT 59.560 50.000 0.00 0.00 0.00 3.85
4749 5079 3.134574 AGATAGGAGTAGCGACAGAGG 57.865 52.381 0.00 0.00 0.00 3.69
4750 5080 5.600908 GTTAGATAGGAGTAGCGACAGAG 57.399 47.826 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.