Multiple sequence alignment - TraesCS3B01G182200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G182200 chr3B 100.000 2851 0 0 1 2851 190925081 190927931 0.000000e+00 5265.0
1 TraesCS3B01G182200 chr3A 90.562 1674 91 28 537 2181 676767433 676769068 0.000000e+00 2154.0
2 TraesCS3B01G182200 chr3A 91.197 284 23 2 1 283 676764876 676765158 4.460000e-103 385.0
3 TraesCS3B01G182200 chr3A 87.097 155 11 5 304 458 676767119 676767264 1.760000e-37 167.0
4 TraesCS3B01G182200 chr3D 90.773 1604 86 17 601 2180 134657938 134659503 0.000000e+00 2085.0
5 TraesCS3B01G182200 chr3D 89.434 530 28 12 1 530 134657297 134657798 0.000000e+00 643.0
6 TraesCS3B01G182200 chr7B 96.875 32 1 0 1322 1353 1482601 1482632 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G182200 chr3B 190925081 190927931 2850 False 5265 5265 100.000000 1 2851 1 chr3B.!!$F1 2850
1 TraesCS3B01G182200 chr3A 676764876 676769068 4192 False 902 2154 89.618667 1 2181 3 chr3A.!!$F1 2180
2 TraesCS3B01G182200 chr3D 134657297 134659503 2206 False 1364 2085 90.103500 1 2180 2 chr3D.!!$F1 2179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 253 0.108424 GGCTGCGTGAGTCTCTTGAT 60.108 55.0 0.65 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 4200 0.106719 CCAACCCACACCTCACTGTT 60.107 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.203625 TTGCTTGCCACCTTCCCC 60.204 61.111 0.00 0.00 0.00 4.81
88 89 1.205893 CCTAGTGACCACAGAGCTTCC 59.794 57.143 2.78 0.00 0.00 3.46
92 93 1.876156 GTGACCACAGAGCTTCCTTTG 59.124 52.381 0.00 0.00 0.00 2.77
107 108 5.432885 TTCCTTTGTCTCAATCCGTTTTC 57.567 39.130 0.00 0.00 0.00 2.29
133 134 3.368323 CCTTGTGTTGGTCTTGTGCTTTT 60.368 43.478 0.00 0.00 0.00 2.27
144 145 1.662517 TGTGCTTTTCTGTCTCGCAA 58.337 45.000 0.00 0.00 31.77 4.85
251 253 0.108424 GGCTGCGTGAGTCTCTTGAT 60.108 55.000 0.65 0.00 0.00 2.57
343 2288 2.483877 GTGAGTCGGATTGTTCATTGCA 59.516 45.455 0.00 0.00 0.00 4.08
344 2289 3.127548 GTGAGTCGGATTGTTCATTGCAT 59.872 43.478 0.00 0.00 0.00 3.96
345 2290 3.758023 TGAGTCGGATTGTTCATTGCATT 59.242 39.130 0.00 0.00 0.00 3.56
346 2291 4.940654 TGAGTCGGATTGTTCATTGCATTA 59.059 37.500 0.00 0.00 0.00 1.90
347 2292 5.414144 TGAGTCGGATTGTTCATTGCATTAA 59.586 36.000 0.00 0.00 0.00 1.40
348 2293 6.095300 TGAGTCGGATTGTTCATTGCATTAAT 59.905 34.615 0.00 0.00 0.00 1.40
349 2294 6.866480 AGTCGGATTGTTCATTGCATTAATT 58.134 32.000 0.00 0.00 0.00 1.40
350 2295 6.753279 AGTCGGATTGTTCATTGCATTAATTG 59.247 34.615 0.00 0.00 0.00 2.32
385 2330 1.085091 CACCTAGAGCTTGCTTGCTG 58.915 55.000 8.64 0.00 44.17 4.41
432 2377 2.726691 CGACCACACCGAATGTCGC 61.727 63.158 0.00 0.00 43.20 5.19
434 2379 1.352156 GACCACACCGAATGTCGCTC 61.352 60.000 0.00 0.00 40.64 5.03
466 2420 5.412594 CAGTTATGTCATGTTAGGTGCTGTT 59.587 40.000 0.00 0.00 0.00 3.16
479 2433 3.776969 AGGTGCTGTTATGGAGATCAAGA 59.223 43.478 0.00 0.00 0.00 3.02
480 2434 4.125703 GGTGCTGTTATGGAGATCAAGAG 58.874 47.826 0.00 0.00 0.00 2.85
481 2435 4.383552 GGTGCTGTTATGGAGATCAAGAGT 60.384 45.833 0.00 0.00 0.00 3.24
482 2436 4.808364 GTGCTGTTATGGAGATCAAGAGTC 59.192 45.833 0.00 0.00 0.00 3.36
484 2438 4.141846 GCTGTTATGGAGATCAAGAGTCCA 60.142 45.833 3.32 3.32 44.48 4.02
485 2439 5.344743 TGTTATGGAGATCAAGAGTCCAC 57.655 43.478 2.92 0.00 43.18 4.02
486 2440 5.026121 TGTTATGGAGATCAAGAGTCCACT 58.974 41.667 2.92 0.00 43.18 4.00
487 2441 5.485353 TGTTATGGAGATCAAGAGTCCACTT 59.515 40.000 2.92 0.00 43.18 3.16
488 2442 6.013379 TGTTATGGAGATCAAGAGTCCACTTT 60.013 38.462 2.92 0.00 43.18 2.66
489 2443 4.277515 TGGAGATCAAGAGTCCACTTTG 57.722 45.455 0.00 0.00 35.36 2.77
490 2444 3.006247 GGAGATCAAGAGTCCACTTTGC 58.994 50.000 0.00 0.00 0.00 3.68
491 2445 3.557898 GGAGATCAAGAGTCCACTTTGCA 60.558 47.826 0.00 0.00 0.00 4.08
505 2459 2.276201 CTTTGCATTGCATGGTGATGG 58.724 47.619 12.95 0.00 38.76 3.51
511 2465 1.879737 TTGCATGGTGATGGTGCTGC 61.880 55.000 0.00 0.00 39.52 5.25
512 2466 2.344981 GCATGGTGATGGTGCTGCA 61.345 57.895 0.00 0.00 36.02 4.41
513 2467 1.509463 CATGGTGATGGTGCTGCAC 59.491 57.895 24.02 24.02 0.00 4.57
532 2487 1.298602 CCGCGAAATGTCCATCATCA 58.701 50.000 8.23 0.00 35.48 3.07
534 2489 2.096069 CCGCGAAATGTCCATCATCATC 60.096 50.000 8.23 0.00 35.48 2.92
568 2614 4.187694 TCCCCGCAAAATAAAAATGATGC 58.812 39.130 0.00 0.00 0.00 3.91
582 2632 7.975866 AAAAATGATGCTGTATTCATCGAAC 57.024 32.000 0.00 0.00 42.32 3.95
583 2633 5.679734 AATGATGCTGTATTCATCGAACC 57.320 39.130 0.00 0.00 42.32 3.62
585 2635 1.934589 TGCTGTATTCATCGAACCCG 58.065 50.000 0.00 0.00 37.07 5.28
586 2636 0.582005 GCTGTATTCATCGAACCCGC 59.418 55.000 0.00 0.00 35.37 6.13
587 2637 1.806623 GCTGTATTCATCGAACCCGCT 60.807 52.381 0.00 0.00 35.37 5.52
588 2638 2.550978 CTGTATTCATCGAACCCGCTT 58.449 47.619 0.00 0.00 35.37 4.68
589 2639 2.936498 CTGTATTCATCGAACCCGCTTT 59.064 45.455 0.00 0.00 35.37 3.51
590 2640 2.675844 TGTATTCATCGAACCCGCTTTG 59.324 45.455 0.00 0.00 35.37 2.77
591 2641 0.451783 ATTCATCGAACCCGCTTTGC 59.548 50.000 0.00 0.00 35.37 3.68
592 2642 0.886938 TTCATCGAACCCGCTTTGCA 60.887 50.000 0.00 0.00 35.37 4.08
593 2643 0.886938 TCATCGAACCCGCTTTGCAA 60.887 50.000 0.00 0.00 35.37 4.08
594 2644 0.729140 CATCGAACCCGCTTTGCAAC 60.729 55.000 0.00 0.00 35.37 4.17
595 2645 1.862602 ATCGAACCCGCTTTGCAACC 61.863 55.000 0.00 0.00 35.37 3.77
596 2646 2.338620 GAACCCGCTTTGCAACCC 59.661 61.111 0.00 0.00 0.00 4.11
597 2647 3.551887 GAACCCGCTTTGCAACCCG 62.552 63.158 0.00 4.65 0.00 5.28
598 2648 4.887190 ACCCGCTTTGCAACCCGT 62.887 61.111 14.51 0.00 0.00 5.28
599 2649 2.670251 CCCGCTTTGCAACCCGTA 60.670 61.111 14.51 0.00 0.00 4.02
641 2691 4.314740 AAGCTTTAATTTTGCGTGTCCA 57.685 36.364 0.00 0.00 0.00 4.02
649 2699 2.270352 TTTGCGTGTCCAGGAGAAAT 57.730 45.000 0.00 0.00 0.00 2.17
662 2712 4.706476 CCAGGAGAAATACATTGCTTCCAA 59.294 41.667 0.00 0.00 35.01 3.53
675 2725 2.699846 TGCTTCCAATTTTCAGCTTGGT 59.300 40.909 0.00 0.00 42.13 3.67
676 2726 3.062042 GCTTCCAATTTTCAGCTTGGTG 58.938 45.455 0.00 0.00 42.13 4.17
677 2727 2.818130 TCCAATTTTCAGCTTGGTGC 57.182 45.000 0.00 0.00 42.13 5.01
678 2728 1.344114 TCCAATTTTCAGCTTGGTGCC 59.656 47.619 0.00 0.00 42.13 5.01
679 2729 1.345415 CCAATTTTCAGCTTGGTGCCT 59.655 47.619 0.00 0.00 44.23 4.75
680 2730 2.562298 CCAATTTTCAGCTTGGTGCCTA 59.438 45.455 0.00 0.00 44.23 3.93
681 2731 3.578688 CAATTTTCAGCTTGGTGCCTAC 58.421 45.455 0.00 0.00 44.23 3.18
700 2750 5.163602 GCCTACTGCCTAGCATGTATAGTAG 60.164 48.000 0.00 0.00 38.13 2.57
812 2879 0.373370 TTACGCACGCATCAGCAATC 59.627 50.000 0.00 0.00 42.27 2.67
861 2928 3.952675 CGCACACGCACTGCCTTT 61.953 61.111 0.00 0.00 38.40 3.11
862 2929 2.353839 GCACACGCACTGCCTTTG 60.354 61.111 0.00 0.00 38.36 2.77
871 2941 3.875134 ACGCACTGCCTTTGTATATAACC 59.125 43.478 0.00 0.00 0.00 2.85
874 2944 4.260620 GCACTGCCTTTGTATATAACCGTG 60.261 45.833 0.00 0.00 0.00 4.94
1017 3087 2.076100 CACATGGCGAAGTTTGCTCTA 58.924 47.619 14.76 2.81 0.00 2.43
1101 3171 2.823154 CACCTTCCTCTTCGTCTTCTCT 59.177 50.000 0.00 0.00 0.00 3.10
1150 3220 4.303086 ACGTATGTAGTACAGTGATGGC 57.697 45.455 9.25 0.00 32.61 4.40
1192 3262 2.281539 TGTGTACCGAGAGTCTGGAA 57.718 50.000 13.56 0.00 0.00 3.53
1198 3273 2.872732 ACCGAGAGTCTGGAACTACAA 58.127 47.619 13.56 0.00 38.74 2.41
1216 3291 7.652300 ACTACAAGTACATGTGTTATGTGTG 57.348 36.000 13.80 8.35 34.75 3.82
1758 3837 0.823356 CTATTGGGTTGGGCCGATGG 60.823 60.000 0.00 0.00 38.44 3.51
1760 3839 2.854300 ATTGGGTTGGGCCGATGGTC 62.854 60.000 0.00 0.00 38.44 4.02
1831 3910 2.674380 CCACCAGCAGCTTCCCAC 60.674 66.667 0.00 0.00 0.00 4.61
1858 3937 2.475487 GCACCGACTTCTAGTTGAACAC 59.525 50.000 0.00 0.00 31.05 3.32
1876 3958 8.778358 GTTGAACACTGATATTCACTTTTCTCT 58.222 33.333 0.00 0.00 34.61 3.10
1887 3969 3.006430 TCACTTTTCTCTACGCATGGACA 59.994 43.478 0.00 0.00 0.00 4.02
1895 3977 2.693074 TCTACGCATGGACAGCTTGATA 59.307 45.455 0.00 0.00 0.00 2.15
1905 3987 4.767409 TGGACAGCTTGATACGCTATATCT 59.233 41.667 6.45 0.00 35.63 1.98
1936 4018 0.598562 TCCAGAACTCGTCAGCTGTC 59.401 55.000 14.67 7.33 0.00 3.51
1977 4059 4.100653 TGTTTGATTTGCCCAAGAACATCA 59.899 37.500 0.00 0.00 0.00 3.07
2024 4107 6.672147 AGAAAATAAGAGTCATGTTGTGTGC 58.328 36.000 0.00 0.00 0.00 4.57
2025 4108 6.488006 AGAAAATAAGAGTCATGTTGTGTGCT 59.512 34.615 0.00 0.00 0.00 4.40
2031 4115 4.512944 AGAGTCATGTTGTGTGCTAGTTTG 59.487 41.667 0.00 0.00 0.00 2.93
2032 4116 3.565482 AGTCATGTTGTGTGCTAGTTTGG 59.435 43.478 0.00 0.00 0.00 3.28
2039 4123 6.039616 TGTTGTGTGCTAGTTTGGAAAATTC 58.960 36.000 0.00 0.00 0.00 2.17
2040 4124 6.127479 TGTTGTGTGCTAGTTTGGAAAATTCT 60.127 34.615 0.00 0.00 0.00 2.40
2092 4176 5.759506 TGTAGTAGCTCATGAACTAGCTC 57.240 43.478 10.19 3.96 45.92 4.09
2113 4197 3.959478 CGTAGCGCTCAATTAGGGA 57.041 52.632 16.34 0.00 40.56 4.20
2115 4199 1.859080 CGTAGCGCTCAATTAGGGAAC 59.141 52.381 16.34 0.34 40.56 3.62
2116 4200 2.737359 CGTAGCGCTCAATTAGGGAACA 60.737 50.000 16.34 0.00 40.56 3.18
2119 4203 1.810151 GCGCTCAATTAGGGAACAACA 59.190 47.619 0.00 0.00 40.56 3.33
2135 4222 0.106719 AACAGTGAGGTGTGGGTTGG 60.107 55.000 0.00 0.00 0.00 3.77
2136 4223 0.986019 ACAGTGAGGTGTGGGTTGGA 60.986 55.000 0.00 0.00 0.00 3.53
2181 4268 6.875948 AACATTTGTGCTAGTGACATGTTA 57.124 33.333 0.00 0.00 29.10 2.41
2182 4269 6.875948 ACATTTGTGCTAGTGACATGTTAA 57.124 33.333 0.00 0.00 0.00 2.01
2183 4270 7.270757 ACATTTGTGCTAGTGACATGTTAAA 57.729 32.000 0.00 0.00 0.00 1.52
2184 4271 7.711846 ACATTTGTGCTAGTGACATGTTAAAA 58.288 30.769 0.00 0.00 0.00 1.52
2185 4272 8.194104 ACATTTGTGCTAGTGACATGTTAAAAA 58.806 29.630 0.00 0.00 0.00 1.94
2211 4298 6.668541 AAAGAACATCATGTTATCTGACCG 57.331 37.500 2.04 0.00 41.28 4.79
2212 4299 4.697514 AGAACATCATGTTATCTGACCGG 58.302 43.478 2.04 0.00 41.28 5.28
2213 4300 4.405680 AGAACATCATGTTATCTGACCGGA 59.594 41.667 9.46 0.00 41.28 5.14
2214 4301 4.753516 ACATCATGTTATCTGACCGGAA 57.246 40.909 9.46 0.00 0.00 4.30
2215 4302 4.697514 ACATCATGTTATCTGACCGGAAG 58.302 43.478 9.46 5.35 0.00 3.46
2216 4303 4.162320 ACATCATGTTATCTGACCGGAAGT 59.838 41.667 9.46 0.00 0.00 3.01
2217 4304 4.386867 TCATGTTATCTGACCGGAAGTC 57.613 45.455 9.46 0.00 46.51 3.01
2226 4313 4.124351 CCGGAAGTCGCACCGCTA 62.124 66.667 0.00 0.00 46.59 4.26
2227 4314 2.879462 CGGAAGTCGCACCGCTAC 60.879 66.667 0.00 0.00 42.55 3.58
2228 4315 2.260434 GGAAGTCGCACCGCTACA 59.740 61.111 0.00 0.00 0.00 2.74
2229 4316 1.805945 GGAAGTCGCACCGCTACAG 60.806 63.158 0.00 0.00 0.00 2.74
2230 4317 2.432628 AAGTCGCACCGCTACAGC 60.433 61.111 0.00 0.00 37.78 4.40
2231 4318 2.820767 GAAGTCGCACCGCTACAGCT 62.821 60.000 0.00 0.00 39.32 4.24
2232 4319 1.592400 AAGTCGCACCGCTACAGCTA 61.592 55.000 0.00 0.00 39.32 3.32
2233 4320 1.065928 GTCGCACCGCTACAGCTAT 59.934 57.895 0.00 0.00 39.32 2.97
2234 4321 0.527817 GTCGCACCGCTACAGCTATT 60.528 55.000 0.00 0.00 39.32 1.73
2235 4322 0.248907 TCGCACCGCTACAGCTATTC 60.249 55.000 0.00 0.00 39.32 1.75
2236 4323 0.249073 CGCACCGCTACAGCTATTCT 60.249 55.000 0.00 0.00 39.32 2.40
2237 4324 1.802880 CGCACCGCTACAGCTATTCTT 60.803 52.381 0.00 0.00 39.32 2.52
2238 4325 2.280628 GCACCGCTACAGCTATTCTTT 58.719 47.619 0.00 0.00 39.32 2.52
2239 4326 2.030946 GCACCGCTACAGCTATTCTTTG 59.969 50.000 0.00 0.00 39.32 2.77
2240 4327 2.030946 CACCGCTACAGCTATTCTTTGC 59.969 50.000 0.00 0.00 39.32 3.68
2241 4328 1.599542 CCGCTACAGCTATTCTTTGCC 59.400 52.381 0.00 0.00 39.32 4.52
2242 4329 2.555199 CGCTACAGCTATTCTTTGCCT 58.445 47.619 0.00 0.00 39.32 4.75
2243 4330 3.492656 CCGCTACAGCTATTCTTTGCCTA 60.493 47.826 0.00 0.00 39.32 3.93
2244 4331 4.310769 CGCTACAGCTATTCTTTGCCTAT 58.689 43.478 0.00 0.00 39.32 2.57
2245 4332 4.752101 CGCTACAGCTATTCTTTGCCTATT 59.248 41.667 0.00 0.00 39.32 1.73
2246 4333 5.333645 CGCTACAGCTATTCTTTGCCTATTG 60.334 44.000 0.00 0.00 39.32 1.90
2247 4334 4.907879 ACAGCTATTCTTTGCCTATTGC 57.092 40.909 0.00 0.00 41.77 3.56
2248 4335 3.633986 ACAGCTATTCTTTGCCTATTGCC 59.366 43.478 0.00 0.00 40.16 4.52
2249 4336 3.633525 CAGCTATTCTTTGCCTATTGCCA 59.366 43.478 0.00 0.00 40.16 4.92
2250 4337 3.887716 AGCTATTCTTTGCCTATTGCCAG 59.112 43.478 0.00 0.00 40.16 4.85
2251 4338 3.885297 GCTATTCTTTGCCTATTGCCAGA 59.115 43.478 0.00 0.00 40.16 3.86
2252 4339 4.023365 GCTATTCTTTGCCTATTGCCAGAG 60.023 45.833 0.00 0.00 40.16 3.35
2253 4340 1.755179 TCTTTGCCTATTGCCAGAGC 58.245 50.000 0.00 0.00 40.16 4.09
2266 4353 3.641437 GCCAGAGCAACAATACAAACA 57.359 42.857 0.00 0.00 39.53 2.83
2267 4354 4.178545 GCCAGAGCAACAATACAAACAT 57.821 40.909 0.00 0.00 39.53 2.71
2268 4355 4.168760 GCCAGAGCAACAATACAAACATC 58.831 43.478 0.00 0.00 39.53 3.06
2269 4356 4.082571 GCCAGAGCAACAATACAAACATCT 60.083 41.667 0.00 0.00 39.53 2.90
2270 4357 5.123820 GCCAGAGCAACAATACAAACATCTA 59.876 40.000 0.00 0.00 39.53 1.98
2271 4358 6.349280 GCCAGAGCAACAATACAAACATCTAA 60.349 38.462 0.00 0.00 39.53 2.10
2272 4359 7.023575 CCAGAGCAACAATACAAACATCTAAC 58.976 38.462 0.00 0.00 0.00 2.34
2273 4360 6.738200 CAGAGCAACAATACAAACATCTAACG 59.262 38.462 0.00 0.00 0.00 3.18
2274 4361 5.390613 AGCAACAATACAAACATCTAACGC 58.609 37.500 0.00 0.00 0.00 4.84
2275 4362 5.049060 AGCAACAATACAAACATCTAACGCA 60.049 36.000 0.00 0.00 0.00 5.24
2276 4363 5.627367 GCAACAATACAAACATCTAACGCAA 59.373 36.000 0.00 0.00 0.00 4.85
2278 4365 5.938322 ACAATACAAACATCTAACGCAAGG 58.062 37.500 0.00 0.00 46.39 3.61
2279 4366 5.106317 ACAATACAAACATCTAACGCAAGGG 60.106 40.000 0.00 0.00 46.39 3.95
2280 4367 1.539827 ACAAACATCTAACGCAAGGGC 59.460 47.619 0.00 0.00 46.39 5.19
2281 4368 1.812571 CAAACATCTAACGCAAGGGCT 59.187 47.619 0.00 0.00 46.39 5.19
2282 4369 2.200373 AACATCTAACGCAAGGGCTT 57.800 45.000 0.00 0.00 46.39 4.35
2283 4370 1.739067 ACATCTAACGCAAGGGCTTC 58.261 50.000 0.00 0.00 46.39 3.86
2284 4371 0.652592 CATCTAACGCAAGGGCTTCG 59.347 55.000 0.00 0.00 46.39 3.79
2285 4372 0.249398 ATCTAACGCAAGGGCTTCGT 59.751 50.000 0.00 0.00 46.39 3.85
2286 4373 0.034337 TCTAACGCAAGGGCTTCGTT 59.966 50.000 4.69 4.69 46.38 3.85
2287 4374 0.442699 CTAACGCAAGGGCTTCGTTC 59.557 55.000 2.45 0.00 44.05 3.95
2288 4375 0.034337 TAACGCAAGGGCTTCGTTCT 59.966 50.000 2.45 0.00 44.05 3.01
2289 4376 0.034337 AACGCAAGGGCTTCGTTCTA 59.966 50.000 0.00 0.00 41.86 2.10
2290 4377 0.249398 ACGCAAGGGCTTCGTTCTAT 59.751 50.000 0.00 0.00 46.39 1.98
2291 4378 1.338769 ACGCAAGGGCTTCGTTCTATT 60.339 47.619 0.00 0.00 46.39 1.73
2292 4379 1.737793 CGCAAGGGCTTCGTTCTATTT 59.262 47.619 0.00 0.00 38.10 1.40
2293 4380 2.476185 CGCAAGGGCTTCGTTCTATTTG 60.476 50.000 0.00 0.00 38.10 2.32
2294 4381 2.747446 GCAAGGGCTTCGTTCTATTTGA 59.253 45.455 0.00 0.00 36.96 2.69
2295 4382 3.181506 GCAAGGGCTTCGTTCTATTTGAG 60.182 47.826 0.00 0.00 36.96 3.02
2296 4383 3.983044 AGGGCTTCGTTCTATTTGAGT 57.017 42.857 0.00 0.00 0.00 3.41
2297 4384 4.287766 AGGGCTTCGTTCTATTTGAGTT 57.712 40.909 0.00 0.00 0.00 3.01
2298 4385 4.003648 AGGGCTTCGTTCTATTTGAGTTG 58.996 43.478 0.00 0.00 0.00 3.16
2299 4386 3.127030 GGGCTTCGTTCTATTTGAGTTGG 59.873 47.826 0.00 0.00 0.00 3.77
2300 4387 3.751698 GGCTTCGTTCTATTTGAGTTGGT 59.248 43.478 0.00 0.00 0.00 3.67
2301 4388 4.215613 GGCTTCGTTCTATTTGAGTTGGTT 59.784 41.667 0.00 0.00 0.00 3.67
2302 4389 5.147162 GCTTCGTTCTATTTGAGTTGGTTG 58.853 41.667 0.00 0.00 0.00 3.77
2303 4390 5.277828 GCTTCGTTCTATTTGAGTTGGTTGT 60.278 40.000 0.00 0.00 0.00 3.32
2304 4391 5.917541 TCGTTCTATTTGAGTTGGTTGTC 57.082 39.130 0.00 0.00 0.00 3.18
2305 4392 4.753107 TCGTTCTATTTGAGTTGGTTGTCC 59.247 41.667 0.00 0.00 0.00 4.02
2306 4393 4.083484 CGTTCTATTTGAGTTGGTTGTCCC 60.083 45.833 0.00 0.00 0.00 4.46
2307 4394 3.670625 TCTATTTGAGTTGGTTGTCCCG 58.329 45.455 0.00 0.00 35.15 5.14
2308 4395 2.358322 ATTTGAGTTGGTTGTCCCGT 57.642 45.000 0.00 0.00 35.15 5.28
2309 4396 2.131776 TTTGAGTTGGTTGTCCCGTT 57.868 45.000 0.00 0.00 35.15 4.44
2310 4397 3.278668 TTTGAGTTGGTTGTCCCGTTA 57.721 42.857 0.00 0.00 35.15 3.18
2311 4398 3.278668 TTGAGTTGGTTGTCCCGTTAA 57.721 42.857 0.00 0.00 35.15 2.01
2312 4399 3.278668 TGAGTTGGTTGTCCCGTTAAA 57.721 42.857 0.00 0.00 35.15 1.52
2313 4400 3.207778 TGAGTTGGTTGTCCCGTTAAAG 58.792 45.455 0.00 0.00 35.15 1.85
2314 4401 2.551032 GAGTTGGTTGTCCCGTTAAAGG 59.449 50.000 0.00 0.00 35.15 3.11
2326 4413 3.760151 CCCGTTAAAGGGTTTTAGGAAGG 59.240 47.826 17.64 0.00 46.38 3.46
2327 4414 4.401022 CCGTTAAAGGGTTTTAGGAAGGT 58.599 43.478 0.00 0.00 30.84 3.50
2328 4415 4.828939 CCGTTAAAGGGTTTTAGGAAGGTT 59.171 41.667 0.00 0.00 30.84 3.50
2329 4416 5.048504 CCGTTAAAGGGTTTTAGGAAGGTTC 60.049 44.000 0.00 0.00 30.84 3.62
2330 4417 5.766670 CGTTAAAGGGTTTTAGGAAGGTTCT 59.233 40.000 0.00 0.00 30.84 3.01
2331 4418 6.936335 CGTTAAAGGGTTTTAGGAAGGTTCTA 59.064 38.462 0.00 0.00 30.84 2.10
2332 4419 7.609146 CGTTAAAGGGTTTTAGGAAGGTTCTAT 59.391 37.037 0.00 0.00 30.84 1.98
2333 4420 9.964354 GTTAAAGGGTTTTAGGAAGGTTCTATA 57.036 33.333 0.00 0.00 30.84 1.31
2335 4422 8.458951 AAAGGGTTTTAGGAAGGTTCTATAGA 57.541 34.615 0.00 0.00 0.00 1.98
2336 4423 7.434927 AGGGTTTTAGGAAGGTTCTATAGAC 57.565 40.000 0.67 0.00 0.00 2.59
2337 4424 7.197616 AGGGTTTTAGGAAGGTTCTATAGACT 58.802 38.462 0.67 0.00 0.00 3.24
2338 4425 7.125963 AGGGTTTTAGGAAGGTTCTATAGACTG 59.874 40.741 0.67 0.00 0.00 3.51
2339 4426 6.762187 GGTTTTAGGAAGGTTCTATAGACTGC 59.238 42.308 0.67 0.00 0.00 4.40
2340 4427 7.364851 GGTTTTAGGAAGGTTCTATAGACTGCT 60.365 40.741 0.67 1.31 0.00 4.24
2341 4428 7.735326 TTTAGGAAGGTTCTATAGACTGCTT 57.265 36.000 0.67 0.00 0.00 3.91
2342 4429 5.862678 AGGAAGGTTCTATAGACTGCTTC 57.137 43.478 0.67 7.18 0.00 3.86
2343 4430 5.273208 AGGAAGGTTCTATAGACTGCTTCA 58.727 41.667 0.67 0.00 0.00 3.02
2344 4431 5.721960 AGGAAGGTTCTATAGACTGCTTCAA 59.278 40.000 0.67 0.00 0.00 2.69
2345 4432 6.045955 GGAAGGTTCTATAGACTGCTTCAAG 58.954 44.000 0.67 0.00 0.00 3.02
2346 4433 5.017294 AGGTTCTATAGACTGCTTCAAGC 57.983 43.478 1.04 1.04 42.82 4.01
2347 4434 4.123506 GGTTCTATAGACTGCTTCAAGCC 58.876 47.826 7.01 0.00 41.51 4.35
2348 4435 3.717400 TCTATAGACTGCTTCAAGCCG 57.283 47.619 7.01 2.43 41.51 5.52
2349 4436 3.288092 TCTATAGACTGCTTCAAGCCGA 58.712 45.455 7.01 0.00 41.51 5.54
2350 4437 3.891977 TCTATAGACTGCTTCAAGCCGAT 59.108 43.478 7.01 0.00 41.51 4.18
2351 4438 3.550437 ATAGACTGCTTCAAGCCGATT 57.450 42.857 7.01 0.00 41.51 3.34
2352 4439 2.191128 AGACTGCTTCAAGCCGATTT 57.809 45.000 7.01 0.00 41.51 2.17
2353 4440 2.508526 AGACTGCTTCAAGCCGATTTT 58.491 42.857 7.01 0.00 41.51 1.82
2354 4441 2.227388 AGACTGCTTCAAGCCGATTTTG 59.773 45.455 7.01 0.00 41.51 2.44
2355 4442 2.226437 GACTGCTTCAAGCCGATTTTGA 59.774 45.455 7.01 0.00 41.51 2.69
2356 4443 2.622942 ACTGCTTCAAGCCGATTTTGAA 59.377 40.909 7.01 8.11 41.51 2.69
2357 4444 3.068024 ACTGCTTCAAGCCGATTTTGAAA 59.932 39.130 7.01 0.00 42.21 2.69
2358 4445 3.641648 TGCTTCAAGCCGATTTTGAAAG 58.358 40.909 7.01 6.15 42.21 2.62
2359 4446 3.068024 TGCTTCAAGCCGATTTTGAAAGT 59.932 39.130 7.01 0.00 42.21 2.66
2360 4447 4.051237 GCTTCAAGCCGATTTTGAAAGTT 58.949 39.130 0.00 0.00 42.21 2.66
2361 4448 4.507756 GCTTCAAGCCGATTTTGAAAGTTT 59.492 37.500 0.00 0.00 42.21 2.66
2362 4449 5.332581 GCTTCAAGCCGATTTTGAAAGTTTC 60.333 40.000 8.75 8.75 42.21 2.78
2363 4450 5.514274 TCAAGCCGATTTTGAAAGTTTCT 57.486 34.783 16.33 0.00 31.98 2.52
2364 4451 5.901552 TCAAGCCGATTTTGAAAGTTTCTT 58.098 33.333 16.33 0.00 31.98 2.52
2365 4452 6.337356 TCAAGCCGATTTTGAAAGTTTCTTT 58.663 32.000 16.33 0.00 31.98 2.52
2366 4453 6.816140 TCAAGCCGATTTTGAAAGTTTCTTTT 59.184 30.769 16.33 0.00 31.98 2.27
2367 4454 6.588348 AGCCGATTTTGAAAGTTTCTTTTG 57.412 33.333 16.33 3.39 0.00 2.44
2368 4455 6.106003 AGCCGATTTTGAAAGTTTCTTTTGT 58.894 32.000 16.33 0.00 0.00 2.83
2369 4456 6.255670 AGCCGATTTTGAAAGTTTCTTTTGTC 59.744 34.615 16.33 7.56 0.00 3.18
2370 4457 6.035542 GCCGATTTTGAAAGTTTCTTTTGTCA 59.964 34.615 16.33 0.00 0.00 3.58
2371 4458 7.612266 CCGATTTTGAAAGTTTCTTTTGTCAG 58.388 34.615 16.33 2.38 0.00 3.51
2372 4459 7.254084 CCGATTTTGAAAGTTTCTTTTGTCAGG 60.254 37.037 16.33 7.05 0.00 3.86
2373 4460 7.275560 CGATTTTGAAAGTTTCTTTTGTCAGGT 59.724 33.333 16.33 0.00 0.00 4.00
2374 4461 8.846943 ATTTTGAAAGTTTCTTTTGTCAGGTT 57.153 26.923 16.33 0.00 0.00 3.50
2375 4462 8.669946 TTTTGAAAGTTTCTTTTGTCAGGTTT 57.330 26.923 16.33 0.00 0.00 3.27
2376 4463 8.669946 TTTGAAAGTTTCTTTTGTCAGGTTTT 57.330 26.923 16.33 0.00 0.00 2.43
2377 4464 7.883229 TGAAAGTTTCTTTTGTCAGGTTTTC 57.117 32.000 16.33 0.00 0.00 2.29
2378 4465 7.666623 TGAAAGTTTCTTTTGTCAGGTTTTCT 58.333 30.769 16.33 0.00 0.00 2.52
2379 4466 8.147704 TGAAAGTTTCTTTTGTCAGGTTTTCTT 58.852 29.630 16.33 0.00 0.00 2.52
2380 4467 7.889589 AAGTTTCTTTTGTCAGGTTTTCTTG 57.110 32.000 0.00 0.00 0.00 3.02
2381 4468 6.398095 AGTTTCTTTTGTCAGGTTTTCTTGG 58.602 36.000 0.00 0.00 0.00 3.61
2382 4469 5.993748 TTCTTTTGTCAGGTTTTCTTGGT 57.006 34.783 0.00 0.00 0.00 3.67
2383 4470 5.993748 TCTTTTGTCAGGTTTTCTTGGTT 57.006 34.783 0.00 0.00 0.00 3.67
2384 4471 6.353404 TCTTTTGTCAGGTTTTCTTGGTTT 57.647 33.333 0.00 0.00 0.00 3.27
2385 4472 6.764379 TCTTTTGTCAGGTTTTCTTGGTTTT 58.236 32.000 0.00 0.00 0.00 2.43
2386 4473 6.871492 TCTTTTGTCAGGTTTTCTTGGTTTTC 59.129 34.615 0.00 0.00 0.00 2.29
2387 4474 5.993748 TTGTCAGGTTTTCTTGGTTTTCT 57.006 34.783 0.00 0.00 0.00 2.52
2388 4475 5.993748 TGTCAGGTTTTCTTGGTTTTCTT 57.006 34.783 0.00 0.00 0.00 2.52
2389 4476 5.961272 TGTCAGGTTTTCTTGGTTTTCTTC 58.039 37.500 0.00 0.00 0.00 2.87
2390 4477 5.714806 TGTCAGGTTTTCTTGGTTTTCTTCT 59.285 36.000 0.00 0.00 0.00 2.85
2391 4478 6.887545 TGTCAGGTTTTCTTGGTTTTCTTCTA 59.112 34.615 0.00 0.00 0.00 2.10
2392 4479 7.559897 TGTCAGGTTTTCTTGGTTTTCTTCTAT 59.440 33.333 0.00 0.00 0.00 1.98
2393 4480 8.414003 GTCAGGTTTTCTTGGTTTTCTTCTATT 58.586 33.333 0.00 0.00 0.00 1.73
2394 4481 8.977412 TCAGGTTTTCTTGGTTTTCTTCTATTT 58.023 29.630 0.00 0.00 0.00 1.40
2395 4482 9.599866 CAGGTTTTCTTGGTTTTCTTCTATTTT 57.400 29.630 0.00 0.00 0.00 1.82
2438 4525 6.783708 TTTTTGATGTAGGTTTTGGACAGT 57.216 33.333 0.00 0.00 0.00 3.55
2439 4526 6.385649 TTTTGATGTAGGTTTTGGACAGTC 57.614 37.500 0.00 0.00 0.00 3.51
2440 4527 4.974645 TGATGTAGGTTTTGGACAGTCT 57.025 40.909 0.00 0.00 0.00 3.24
2441 4528 5.304686 TGATGTAGGTTTTGGACAGTCTT 57.695 39.130 0.00 0.00 0.00 3.01
2442 4529 5.305585 TGATGTAGGTTTTGGACAGTCTTC 58.694 41.667 0.00 0.00 0.00 2.87
2443 4530 5.071788 TGATGTAGGTTTTGGACAGTCTTCT 59.928 40.000 0.00 0.00 0.00 2.85
2444 4531 6.269077 TGATGTAGGTTTTGGACAGTCTTCTA 59.731 38.462 0.00 0.00 0.00 2.10
2445 4532 5.850614 TGTAGGTTTTGGACAGTCTTCTAC 58.149 41.667 0.00 5.00 0.00 2.59
2446 4533 3.991367 AGGTTTTGGACAGTCTTCTACG 58.009 45.455 0.00 0.00 0.00 3.51
2447 4534 3.387050 AGGTTTTGGACAGTCTTCTACGT 59.613 43.478 0.00 0.00 0.00 3.57
2448 4535 3.739810 GGTTTTGGACAGTCTTCTACGTC 59.260 47.826 0.00 0.00 33.58 4.34
2449 4536 4.501058 GGTTTTGGACAGTCTTCTACGTCT 60.501 45.833 0.00 0.00 34.29 4.18
2450 4537 3.917329 TTGGACAGTCTTCTACGTCTG 57.083 47.619 0.00 0.00 34.29 3.51
2451 4538 2.860009 TGGACAGTCTTCTACGTCTGT 58.140 47.619 5.13 5.13 42.66 3.41
2452 4539 3.220110 TGGACAGTCTTCTACGTCTGTT 58.780 45.455 6.76 0.00 40.53 3.16
2453 4540 3.635373 TGGACAGTCTTCTACGTCTGTTT 59.365 43.478 6.76 0.00 40.53 2.83
2454 4541 4.098960 TGGACAGTCTTCTACGTCTGTTTT 59.901 41.667 6.76 0.00 40.53 2.43
2455 4542 4.444720 GGACAGTCTTCTACGTCTGTTTTG 59.555 45.833 6.76 0.00 40.53 2.44
2456 4543 5.007385 ACAGTCTTCTACGTCTGTTTTGT 57.993 39.130 0.00 0.00 37.81 2.83
2457 4544 4.804139 ACAGTCTTCTACGTCTGTTTTGTG 59.196 41.667 0.00 0.00 37.81 3.33
2458 4545 4.209288 CAGTCTTCTACGTCTGTTTTGTGG 59.791 45.833 0.00 0.00 0.00 4.17
2459 4546 3.059800 GTCTTCTACGTCTGTTTTGTGGC 60.060 47.826 0.00 0.00 0.00 5.01
2460 4547 2.902705 TCTACGTCTGTTTTGTGGCT 57.097 45.000 0.00 0.00 0.00 4.75
2461 4548 2.479837 TCTACGTCTGTTTTGTGGCTG 58.520 47.619 0.00 0.00 0.00 4.85
2462 4549 1.531149 CTACGTCTGTTTTGTGGCTGG 59.469 52.381 0.00 0.00 0.00 4.85
2463 4550 0.107410 ACGTCTGTTTTGTGGCTGGA 60.107 50.000 0.00 0.00 0.00 3.86
2464 4551 1.238439 CGTCTGTTTTGTGGCTGGAT 58.762 50.000 0.00 0.00 0.00 3.41
2465 4552 1.608590 CGTCTGTTTTGTGGCTGGATT 59.391 47.619 0.00 0.00 0.00 3.01
2466 4553 2.034558 CGTCTGTTTTGTGGCTGGATTT 59.965 45.455 0.00 0.00 0.00 2.17
2467 4554 3.642705 GTCTGTTTTGTGGCTGGATTTC 58.357 45.455 0.00 0.00 0.00 2.17
2468 4555 3.319122 GTCTGTTTTGTGGCTGGATTTCT 59.681 43.478 0.00 0.00 0.00 2.52
2469 4556 3.569701 TCTGTTTTGTGGCTGGATTTCTC 59.430 43.478 0.00 0.00 0.00 2.87
2470 4557 3.565307 TGTTTTGTGGCTGGATTTCTCT 58.435 40.909 0.00 0.00 0.00 3.10
2471 4558 3.960102 TGTTTTGTGGCTGGATTTCTCTT 59.040 39.130 0.00 0.00 0.00 2.85
2472 4559 4.405358 TGTTTTGTGGCTGGATTTCTCTTT 59.595 37.500 0.00 0.00 0.00 2.52
2473 4560 5.104982 TGTTTTGTGGCTGGATTTCTCTTTT 60.105 36.000 0.00 0.00 0.00 2.27
2474 4561 5.612725 TTTGTGGCTGGATTTCTCTTTTT 57.387 34.783 0.00 0.00 0.00 1.94
2506 4593 9.549078 TTTATTTACTGGTTGTTTGGATTTTCC 57.451 29.630 0.00 0.00 36.96 3.13
2507 4594 6.546428 TTTACTGGTTGTTTGGATTTTCCA 57.454 33.333 0.00 0.00 46.61 3.53
2559 4646 9.995003 AATTGTACCTTTTTGAATGCATAAAGA 57.005 25.926 15.97 3.77 42.21 2.52
2560 4647 9.995003 ATTGTACCTTTTTGAATGCATAAAGAA 57.005 25.926 15.97 8.79 42.21 2.52
2561 4648 9.995003 TTGTACCTTTTTGAATGCATAAAGAAT 57.005 25.926 15.97 7.93 42.21 2.40
2589 4676 8.873215 TTTAAAACATGGTTAGCATTTTTCGA 57.127 26.923 8.64 0.00 0.00 3.71
2590 4677 8.873215 TTAAAACATGGTTAGCATTTTTCGAA 57.127 26.923 8.64 0.00 0.00 3.71
2591 4678 7.961325 AAAACATGGTTAGCATTTTTCGAAT 57.039 28.000 8.64 0.00 0.00 3.34
2593 4680 8.460831 AAACATGGTTAGCATTTTTCGAATAC 57.539 30.769 0.00 0.00 0.00 1.89
2594 4681 7.151999 ACATGGTTAGCATTTTTCGAATACA 57.848 32.000 0.00 0.00 0.00 2.29
2595 4682 7.771183 ACATGGTTAGCATTTTTCGAATACAT 58.229 30.769 0.00 0.00 0.00 2.29
2596 4683 7.701924 ACATGGTTAGCATTTTTCGAATACATG 59.298 33.333 0.00 4.60 36.48 3.21
2597 4684 7.384439 TGGTTAGCATTTTTCGAATACATGA 57.616 32.000 13.26 0.00 0.00 3.07
2598 4685 7.995289 TGGTTAGCATTTTTCGAATACATGAT 58.005 30.769 13.26 10.34 0.00 2.45
2599 4686 8.465999 TGGTTAGCATTTTTCGAATACATGATT 58.534 29.630 13.26 0.00 0.00 2.57
2600 4687 9.944663 GGTTAGCATTTTTCGAATACATGATTA 57.055 29.630 13.26 1.82 0.00 1.75
2634 4721 9.952030 TTTCAAATACATACTTGGATGTCTACA 57.048 29.630 1.22 0.00 40.54 2.74
2642 4729 9.113838 ACATACTTGGATGTCTACATTTCATTC 57.886 33.333 0.00 0.00 34.97 2.67
2643 4730 9.112725 CATACTTGGATGTCTACATTTCATTCA 57.887 33.333 0.00 0.00 36.57 2.57
2644 4731 9.857656 ATACTTGGATGTCTACATTTCATTCAT 57.142 29.630 0.00 0.00 36.57 2.57
2646 4733 9.334947 ACTTGGATGTCTACATTTCATTCATAG 57.665 33.333 0.00 0.00 36.57 2.23
2647 4734 9.551734 CTTGGATGTCTACATTTCATTCATAGA 57.448 33.333 0.00 0.00 36.57 1.98
2648 4735 8.893219 TGGATGTCTACATTTCATTCATAGAC 57.107 34.615 0.00 0.00 41.33 2.59
2653 4740 9.671279 TGTCTACATTTCATTCATAGACATTGT 57.329 29.630 8.04 0.00 44.15 2.71
2742 4829 9.888878 ATGCTTTTCAACATCTTCGAATATATG 57.111 29.630 0.00 6.05 0.00 1.78
2743 4830 8.892723 TGCTTTTCAACATCTTCGAATATATGT 58.107 29.630 12.58 12.58 34.11 2.29
2744 4831 9.722056 GCTTTTCAACATCTTCGAATATATGTT 57.278 29.630 19.74 19.74 41.87 2.71
2749 4836 9.377312 TCAACATCTTCGAATATATGTTCAACA 57.623 29.630 21.40 0.00 39.80 3.33
2778 4865 9.897744 TTTTCAGATACATGTTGAACATTTCTC 57.102 29.630 8.30 5.00 36.53 2.87
2779 4866 8.853077 TTCAGATACATGTTGAACATTTCTCT 57.147 30.769 8.30 7.26 36.53 3.10
2780 4867 8.260270 TCAGATACATGTTGAACATTTCTCTG 57.740 34.615 23.08 23.08 36.53 3.35
2781 4868 8.096414 TCAGATACATGTTGAACATTTCTCTGA 58.904 33.333 25.61 25.61 39.10 3.27
2782 4869 8.173775 CAGATACATGTTGAACATTTCTCTGAC 58.826 37.037 24.02 7.55 36.53 3.51
2783 4870 8.099537 AGATACATGTTGAACATTTCTCTGACT 58.900 33.333 8.30 0.00 36.53 3.41
2784 4871 6.309712 ACATGTTGAACATTTCTCTGACTG 57.690 37.500 8.30 0.00 36.53 3.51
2785 4872 6.057533 ACATGTTGAACATTTCTCTGACTGA 58.942 36.000 8.30 0.00 36.53 3.41
2786 4873 6.713903 ACATGTTGAACATTTCTCTGACTGAT 59.286 34.615 8.30 0.00 36.53 2.90
2787 4874 7.879677 ACATGTTGAACATTTCTCTGACTGATA 59.120 33.333 8.30 0.00 36.53 2.15
2788 4875 8.724229 CATGTTGAACATTTCTCTGACTGATAA 58.276 33.333 8.30 0.00 36.53 1.75
2789 4876 8.675705 TGTTGAACATTTCTCTGACTGATAAA 57.324 30.769 0.00 0.00 0.00 1.40
2790 4877 8.559536 TGTTGAACATTTCTCTGACTGATAAAC 58.440 33.333 0.00 0.00 0.00 2.01
2791 4878 8.559536 GTTGAACATTTCTCTGACTGATAAACA 58.440 33.333 0.00 0.00 0.00 2.83
2792 4879 8.675705 TGAACATTTCTCTGACTGATAAACAA 57.324 30.769 0.00 0.00 0.00 2.83
2793 4880 9.288576 TGAACATTTCTCTGACTGATAAACAAT 57.711 29.630 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.299089 GTGGCAAGCAACGGTTCAC 60.299 57.895 0.00 0.00 0.00 3.18
11 12 2.644992 GGAAGGTGGCAAGCAACG 59.355 61.111 0.00 0.00 0.00 4.10
30 31 5.583495 TCTTTTGTGATTTAACCCAACGTG 58.417 37.500 0.00 0.00 0.00 4.49
79 80 3.688673 GGATTGAGACAAAGGAAGCTCTG 59.311 47.826 0.00 0.00 0.00 3.35
88 89 5.452777 GGAAGAAAACGGATTGAGACAAAG 58.547 41.667 0.00 0.00 0.00 2.77
92 93 3.676093 AGGGAAGAAAACGGATTGAGAC 58.324 45.455 0.00 0.00 0.00 3.36
107 108 2.358898 CACAAGACCAACACAAGGGAAG 59.641 50.000 0.00 0.00 0.00 3.46
133 134 0.250684 TTGGCCATTTGCGAGACAGA 60.251 50.000 6.09 0.00 42.61 3.41
144 145 2.332654 GGCGTCTCGTTTGGCCATT 61.333 57.895 6.09 0.00 44.91 3.16
240 242 3.122613 CACGCTGTTCAATCAAGAGACTC 59.877 47.826 0.00 0.00 0.00 3.36
251 253 0.537143 AGGATTGGCACGCTGTTCAA 60.537 50.000 0.00 0.00 0.00 2.69
293 295 8.205512 TGAGTTTACACTTGGTATTTCAGTGTA 58.794 33.333 7.20 7.20 42.68 2.90
343 2288 5.899299 GCAGGAGCACTTCATTCAATTAAT 58.101 37.500 0.00 0.00 41.58 1.40
344 2289 5.314923 GCAGGAGCACTTCATTCAATTAA 57.685 39.130 0.00 0.00 41.58 1.40
345 2290 4.970662 GCAGGAGCACTTCATTCAATTA 57.029 40.909 0.00 0.00 41.58 1.40
346 2291 3.863142 GCAGGAGCACTTCATTCAATT 57.137 42.857 0.00 0.00 41.58 2.32
432 2377 7.664082 AACATGACATAACTGAGAACAAGAG 57.336 36.000 0.00 0.00 0.00 2.85
434 2379 7.604164 ACCTAACATGACATAACTGAGAACAAG 59.396 37.037 0.00 0.00 0.00 3.16
466 2420 5.627735 GCAAAGTGGACTCTTGATCTCCATA 60.628 44.000 4.12 0.00 36.47 2.74
479 2433 1.274167 CCATGCAATGCAAAGTGGACT 59.726 47.619 18.66 0.00 44.97 3.85
480 2434 1.001181 ACCATGCAATGCAAAGTGGAC 59.999 47.619 27.21 0.00 44.97 4.02
481 2435 1.001068 CACCATGCAATGCAAAGTGGA 59.999 47.619 27.21 0.00 44.97 4.02
482 2436 1.001068 TCACCATGCAATGCAAAGTGG 59.999 47.619 28.53 25.17 44.97 4.00
484 2438 2.354303 CCATCACCATGCAATGCAAAGT 60.354 45.455 13.45 9.98 44.97 2.66
485 2439 2.276201 CCATCACCATGCAATGCAAAG 58.724 47.619 13.45 9.25 44.97 2.77
486 2440 1.624312 ACCATCACCATGCAATGCAAA 59.376 42.857 13.45 0.00 44.97 3.68
487 2441 1.066787 CACCATCACCATGCAATGCAA 60.067 47.619 13.45 0.00 44.97 4.08
488 2442 0.533032 CACCATCACCATGCAATGCA 59.467 50.000 11.44 11.44 44.97 3.96
489 2443 0.808453 GCACCATCACCATGCAATGC 60.808 55.000 0.00 0.00 44.97 3.56
490 2444 0.821517 AGCACCATCACCATGCAATG 59.178 50.000 0.00 0.00 46.21 2.82
491 2445 0.821517 CAGCACCATCACCATGCAAT 59.178 50.000 0.00 0.00 41.97 3.56
505 2459 2.502510 CATTTCGCGGTGCAGCAC 60.503 61.111 17.97 17.97 36.85 4.40
511 2465 1.003545 GATGATGGACATTTCGCGGTG 60.004 52.381 6.13 5.86 39.56 4.94
512 2466 1.299541 GATGATGGACATTTCGCGGT 58.700 50.000 6.13 0.00 39.56 5.68
513 2467 1.298602 TGATGATGGACATTTCGCGG 58.701 50.000 6.13 0.00 39.56 6.46
514 2468 2.545106 TGATGATGATGGACATTTCGCG 59.455 45.455 0.00 0.00 39.56 5.87
568 2614 2.225068 AGCGGGTTCGATGAATACAG 57.775 50.000 0.00 0.00 39.00 2.74
585 2635 1.404035 CCCTAATACGGGTTGCAAAGC 59.596 52.381 0.00 0.00 45.23 3.51
586 2636 1.404035 GCCCTAATACGGGTTGCAAAG 59.596 52.381 0.00 0.00 46.47 2.77
587 2637 1.465794 GCCCTAATACGGGTTGCAAA 58.534 50.000 0.00 0.00 46.47 3.68
588 2638 0.745128 CGCCCTAATACGGGTTGCAA 60.745 55.000 0.00 0.00 46.47 4.08
589 2639 1.153329 CGCCCTAATACGGGTTGCA 60.153 57.895 0.00 0.00 46.47 4.08
590 2640 0.745486 AACGCCCTAATACGGGTTGC 60.745 55.000 0.00 0.00 46.47 4.17
591 2641 1.292992 GAACGCCCTAATACGGGTTG 58.707 55.000 0.00 0.00 46.47 3.77
592 2642 0.179103 CGAACGCCCTAATACGGGTT 60.179 55.000 0.00 0.00 46.47 4.11
593 2643 1.438814 CGAACGCCCTAATACGGGT 59.561 57.895 0.00 0.00 46.47 5.28
595 2645 3.621520 GCGAACGCCCTAATACGG 58.378 61.111 8.03 0.00 34.56 4.02
641 2691 7.486407 AAATTGGAAGCAATGTATTTCTCCT 57.514 32.000 0.00 0.00 0.00 3.69
649 2699 5.726980 AGCTGAAAATTGGAAGCAATGTA 57.273 34.783 8.66 0.00 38.14 2.29
662 2712 2.821969 CAGTAGGCACCAAGCTGAAAAT 59.178 45.455 0.00 0.00 44.79 1.82
676 2726 3.511934 ACTATACATGCTAGGCAGTAGGC 59.488 47.826 0.00 0.00 43.65 3.93
677 2727 5.358442 CCTACTATACATGCTAGGCAGTAGG 59.642 48.000 15.97 15.97 43.65 3.18
678 2728 5.946972 ACCTACTATACATGCTAGGCAGTAG 59.053 44.000 0.00 2.04 43.65 2.57
679 2729 5.710567 CACCTACTATACATGCTAGGCAGTA 59.289 44.000 0.00 2.23 43.65 2.74
680 2730 4.524714 CACCTACTATACATGCTAGGCAGT 59.475 45.833 0.00 0.18 43.65 4.40
681 2731 4.081972 CCACCTACTATACATGCTAGGCAG 60.082 50.000 0.00 0.00 43.65 4.85
700 2750 3.118992 GGATGGAAAAGCAAATCTCCACC 60.119 47.826 0.00 0.00 40.69 4.61
812 2879 2.440247 GAGGCGGGAAATGGTGGG 60.440 66.667 0.00 0.00 0.00 4.61
861 2928 3.319972 GCAGGAGGTCACGGTTATATACA 59.680 47.826 0.00 0.00 0.00 2.29
862 2929 3.319972 TGCAGGAGGTCACGGTTATATAC 59.680 47.826 0.00 0.00 0.00 1.47
871 2941 2.262915 GGAGTGCAGGAGGTCACG 59.737 66.667 0.00 0.00 38.19 4.35
874 2944 1.835927 AAGCTGGAGTGCAGGAGGTC 61.836 60.000 14.04 0.00 34.99 3.85
1192 3262 7.170828 CACACACATAACACATGTACTTGTAGT 59.829 37.037 13.51 11.20 0.00 2.73
1198 3273 4.384940 TGCACACACATAACACATGTACT 58.615 39.130 0.00 0.00 0.00 2.73
1661 3740 1.007271 CATAGACGCGCCGGAGAAT 60.007 57.895 10.31 0.00 0.00 2.40
1768 3847 0.611062 ATATACTAGCCCCGCGAGCA 60.611 55.000 20.69 8.04 34.73 4.26
1831 3910 0.249073 CTAGAAGTCGGTGCCATCGG 60.249 60.000 0.00 0.00 0.00 4.18
1858 3937 7.307042 CCATGCGTAGAGAAAAGTGAATATCAG 60.307 40.741 0.00 0.00 0.00 2.90
1876 3958 2.798145 CGTATCAAGCTGTCCATGCGTA 60.798 50.000 0.00 0.00 35.28 4.42
1895 3977 5.462398 GGACGATTTTCACAAGATATAGCGT 59.538 40.000 0.00 0.00 0.00 5.07
1905 3987 3.493129 CGAGTTCTGGACGATTTTCACAA 59.507 43.478 0.00 0.00 0.00 3.33
1936 4018 3.609103 ACAACAAAAGAACGCTGCTAG 57.391 42.857 0.00 0.00 0.00 3.42
1943 4025 5.254842 GGCAAATCAAACAACAAAAGAACG 58.745 37.500 0.00 0.00 0.00 3.95
2105 4189 4.141251 ACACCTCACTGTTGTTCCCTAATT 60.141 41.667 0.00 0.00 0.00 1.40
2106 4190 3.394606 ACACCTCACTGTTGTTCCCTAAT 59.605 43.478 0.00 0.00 0.00 1.73
2113 4197 0.623723 ACCCACACCTCACTGTTGTT 59.376 50.000 0.00 0.00 0.00 2.83
2115 4199 1.024271 CAACCCACACCTCACTGTTG 58.976 55.000 0.00 0.00 0.00 3.33
2116 4200 0.106719 CCAACCCACACCTCACTGTT 60.107 55.000 0.00 0.00 0.00 3.16
2119 4203 0.986019 TGTCCAACCCACACCTCACT 60.986 55.000 0.00 0.00 0.00 3.41
2130 4217 3.418684 AACTGTGGTAGATGTCCAACC 57.581 47.619 0.00 0.00 36.68 3.77
2135 4222 9.865321 TGTTTAGTATAAACTGTGGTAGATGTC 57.135 33.333 12.25 0.00 36.36 3.06
2186 4273 7.362056 CCGGTCAGATAACATGATGTTCTTTTT 60.362 37.037 14.91 0.00 40.22 1.94
2187 4274 6.094048 CCGGTCAGATAACATGATGTTCTTTT 59.906 38.462 14.91 0.00 40.22 2.27
2188 4275 5.586243 CCGGTCAGATAACATGATGTTCTTT 59.414 40.000 14.91 1.06 40.22 2.52
2189 4276 5.104941 TCCGGTCAGATAACATGATGTTCTT 60.105 40.000 14.91 3.71 40.22 2.52
2190 4277 4.405680 TCCGGTCAGATAACATGATGTTCT 59.594 41.667 14.91 4.84 40.22 3.01
2191 4278 4.693283 TCCGGTCAGATAACATGATGTTC 58.307 43.478 14.91 1.27 40.22 3.18
2192 4279 4.753516 TCCGGTCAGATAACATGATGTT 57.246 40.909 15.80 15.80 43.88 2.71
2193 4280 4.162320 ACTTCCGGTCAGATAACATGATGT 59.838 41.667 0.00 0.00 0.00 3.06
2194 4281 4.697514 ACTTCCGGTCAGATAACATGATG 58.302 43.478 0.00 0.00 0.00 3.07
2195 4282 4.499865 CGACTTCCGGTCAGATAACATGAT 60.500 45.833 0.00 0.00 44.70 2.45
2196 4283 3.181490 CGACTTCCGGTCAGATAACATGA 60.181 47.826 0.00 0.00 44.70 3.07
2197 4284 3.116300 CGACTTCCGGTCAGATAACATG 58.884 50.000 0.00 0.00 44.70 3.21
2198 4285 2.481449 GCGACTTCCGGTCAGATAACAT 60.481 50.000 0.00 0.00 44.70 2.71
2199 4286 1.135199 GCGACTTCCGGTCAGATAACA 60.135 52.381 0.00 0.00 44.70 2.41
2200 4287 1.135199 TGCGACTTCCGGTCAGATAAC 60.135 52.381 0.00 0.00 44.70 1.89
2201 4288 1.135199 GTGCGACTTCCGGTCAGATAA 60.135 52.381 0.00 0.00 44.70 1.75
2202 4289 0.454600 GTGCGACTTCCGGTCAGATA 59.545 55.000 0.00 0.00 44.70 1.98
2203 4290 1.215647 GTGCGACTTCCGGTCAGAT 59.784 57.895 0.00 0.00 44.70 2.90
2204 4291 2.649034 GTGCGACTTCCGGTCAGA 59.351 61.111 0.00 0.00 44.70 3.27
2205 4292 2.432628 GGTGCGACTTCCGGTCAG 60.433 66.667 0.00 0.93 44.70 3.51
2206 4293 4.351938 CGGTGCGACTTCCGGTCA 62.352 66.667 0.00 0.00 44.70 4.02
2209 4296 4.124351 TAGCGGTGCGACTTCCGG 62.124 66.667 0.00 0.00 45.85 5.14
2211 4298 1.805945 CTGTAGCGGTGCGACTTCC 60.806 63.158 0.00 0.00 35.31 3.46
2212 4299 2.445438 GCTGTAGCGGTGCGACTTC 61.445 63.158 0.00 0.00 35.31 3.01
2213 4300 2.432628 GCTGTAGCGGTGCGACTT 60.433 61.111 0.00 0.00 35.31 3.01
2222 4309 8.679426 GCAATAGGCAAAGAATAGCTGTAGCG 62.679 46.154 0.00 0.00 44.29 4.26
2223 4310 5.561725 GCAATAGGCAAAGAATAGCTGTAGC 60.562 44.000 0.00 0.00 43.97 3.58
2224 4311 5.995055 GCAATAGGCAAAGAATAGCTGTAG 58.005 41.667 0.00 0.00 43.97 2.74
2226 4313 4.907879 GCAATAGGCAAAGAATAGCTGT 57.092 40.909 0.00 0.00 43.97 4.40
2246 4333 3.641437 TGTTTGTATTGTTGCTCTGGC 57.359 42.857 0.00 0.00 39.26 4.85
2247 4334 5.633830 AGATGTTTGTATTGTTGCTCTGG 57.366 39.130 0.00 0.00 0.00 3.86
2248 4335 6.738200 CGTTAGATGTTTGTATTGTTGCTCTG 59.262 38.462 0.00 0.00 0.00 3.35
2249 4336 6.620733 GCGTTAGATGTTTGTATTGTTGCTCT 60.621 38.462 0.00 0.00 0.00 4.09
2250 4337 5.508224 GCGTTAGATGTTTGTATTGTTGCTC 59.492 40.000 0.00 0.00 0.00 4.26
2251 4338 5.049060 TGCGTTAGATGTTTGTATTGTTGCT 60.049 36.000 0.00 0.00 0.00 3.91
2252 4339 5.150683 TGCGTTAGATGTTTGTATTGTTGC 58.849 37.500 0.00 0.00 0.00 4.17
2253 4340 6.305399 CCTTGCGTTAGATGTTTGTATTGTTG 59.695 38.462 0.00 0.00 0.00 3.33
2254 4341 6.378582 CCTTGCGTTAGATGTTTGTATTGTT 58.621 36.000 0.00 0.00 0.00 2.83
2255 4342 5.106317 CCCTTGCGTTAGATGTTTGTATTGT 60.106 40.000 0.00 0.00 0.00 2.71
2256 4343 5.331902 CCCTTGCGTTAGATGTTTGTATTG 58.668 41.667 0.00 0.00 0.00 1.90
2257 4344 4.142469 GCCCTTGCGTTAGATGTTTGTATT 60.142 41.667 0.00 0.00 0.00 1.89
2258 4345 3.377172 GCCCTTGCGTTAGATGTTTGTAT 59.623 43.478 0.00 0.00 0.00 2.29
2259 4346 2.745281 GCCCTTGCGTTAGATGTTTGTA 59.255 45.455 0.00 0.00 0.00 2.41
2260 4347 1.539827 GCCCTTGCGTTAGATGTTTGT 59.460 47.619 0.00 0.00 0.00 2.83
2261 4348 1.812571 AGCCCTTGCGTTAGATGTTTG 59.187 47.619 0.00 0.00 44.33 2.93
2262 4349 2.200373 AGCCCTTGCGTTAGATGTTT 57.800 45.000 0.00 0.00 44.33 2.83
2263 4350 2.084546 GAAGCCCTTGCGTTAGATGTT 58.915 47.619 0.00 0.00 44.33 2.71
2264 4351 1.739067 GAAGCCCTTGCGTTAGATGT 58.261 50.000 0.00 0.00 44.33 3.06
2265 4352 0.652592 CGAAGCCCTTGCGTTAGATG 59.347 55.000 0.00 0.00 44.33 2.90
2266 4353 0.249398 ACGAAGCCCTTGCGTTAGAT 59.751 50.000 0.00 0.00 44.33 1.98
2267 4354 0.034337 AACGAAGCCCTTGCGTTAGA 59.966 50.000 12.88 0.00 45.19 2.10
2268 4355 0.442699 GAACGAAGCCCTTGCGTTAG 59.557 55.000 13.85 0.00 46.73 2.34
2269 4356 0.034337 AGAACGAAGCCCTTGCGTTA 59.966 50.000 13.85 0.00 46.73 3.18
2271 4358 0.249398 ATAGAACGAAGCCCTTGCGT 59.751 50.000 0.00 0.00 44.33 5.24
2272 4359 1.369625 AATAGAACGAAGCCCTTGCG 58.630 50.000 0.00 0.00 44.33 4.85
2273 4360 2.747446 TCAAATAGAACGAAGCCCTTGC 59.253 45.455 0.00 0.00 37.95 4.01
2274 4361 4.003648 ACTCAAATAGAACGAAGCCCTTG 58.996 43.478 0.00 0.00 0.00 3.61
2275 4362 4.287766 ACTCAAATAGAACGAAGCCCTT 57.712 40.909 0.00 0.00 0.00 3.95
2276 4363 3.983044 ACTCAAATAGAACGAAGCCCT 57.017 42.857 0.00 0.00 0.00 5.19
2277 4364 3.127030 CCAACTCAAATAGAACGAAGCCC 59.873 47.826 0.00 0.00 0.00 5.19
2278 4365 3.751698 ACCAACTCAAATAGAACGAAGCC 59.248 43.478 0.00 0.00 0.00 4.35
2279 4366 5.147162 CAACCAACTCAAATAGAACGAAGC 58.853 41.667 0.00 0.00 0.00 3.86
2280 4367 6.300354 ACAACCAACTCAAATAGAACGAAG 57.700 37.500 0.00 0.00 0.00 3.79
2281 4368 5.237779 GGACAACCAACTCAAATAGAACGAA 59.762 40.000 0.00 0.00 35.97 3.85
2282 4369 4.753107 GGACAACCAACTCAAATAGAACGA 59.247 41.667 0.00 0.00 35.97 3.85
2283 4370 4.083484 GGGACAACCAACTCAAATAGAACG 60.083 45.833 0.00 0.00 39.85 3.95
2284 4371 4.083484 CGGGACAACCAACTCAAATAGAAC 60.083 45.833 0.00 0.00 40.22 3.01
2285 4372 4.069304 CGGGACAACCAACTCAAATAGAA 58.931 43.478 0.00 0.00 40.22 2.10
2286 4373 3.071892 ACGGGACAACCAACTCAAATAGA 59.928 43.478 0.00 0.00 40.22 1.98
2287 4374 3.408634 ACGGGACAACCAACTCAAATAG 58.591 45.455 0.00 0.00 40.22 1.73
2288 4375 3.495434 ACGGGACAACCAACTCAAATA 57.505 42.857 0.00 0.00 40.22 1.40
2289 4376 2.358322 ACGGGACAACCAACTCAAAT 57.642 45.000 0.00 0.00 40.22 2.32
2290 4377 2.131776 AACGGGACAACCAACTCAAA 57.868 45.000 0.00 0.00 40.22 2.69
2291 4378 3.278668 TTAACGGGACAACCAACTCAA 57.721 42.857 0.00 0.00 40.22 3.02
2292 4379 3.207778 CTTTAACGGGACAACCAACTCA 58.792 45.455 0.00 0.00 40.22 3.41
2293 4380 2.551032 CCTTTAACGGGACAACCAACTC 59.449 50.000 0.00 0.00 40.22 3.01
2294 4381 2.578786 CCTTTAACGGGACAACCAACT 58.421 47.619 0.00 0.00 40.22 3.16
2305 4392 4.401022 ACCTTCCTAAAACCCTTTAACGG 58.599 43.478 0.00 0.00 0.00 4.44
2306 4393 5.766670 AGAACCTTCCTAAAACCCTTTAACG 59.233 40.000 0.00 0.00 0.00 3.18
2307 4394 8.874744 ATAGAACCTTCCTAAAACCCTTTAAC 57.125 34.615 0.00 0.00 0.00 2.01
2309 4396 9.564961 TCTATAGAACCTTCCTAAAACCCTTTA 57.435 33.333 0.00 0.00 0.00 1.85
2310 4397 8.327271 GTCTATAGAACCTTCCTAAAACCCTTT 58.673 37.037 3.40 0.00 0.00 3.11
2311 4398 7.683322 AGTCTATAGAACCTTCCTAAAACCCTT 59.317 37.037 3.40 0.00 0.00 3.95
2312 4399 7.125963 CAGTCTATAGAACCTTCCTAAAACCCT 59.874 40.741 3.40 0.00 0.00 4.34
2313 4400 7.273712 CAGTCTATAGAACCTTCCTAAAACCC 58.726 42.308 3.40 0.00 0.00 4.11
2314 4401 6.762187 GCAGTCTATAGAACCTTCCTAAAACC 59.238 42.308 3.40 0.00 0.00 3.27
2315 4402 7.557724 AGCAGTCTATAGAACCTTCCTAAAAC 58.442 38.462 3.40 0.00 0.00 2.43
2316 4403 7.735326 AGCAGTCTATAGAACCTTCCTAAAA 57.265 36.000 3.40 0.00 0.00 1.52
2317 4404 7.399191 TGAAGCAGTCTATAGAACCTTCCTAAA 59.601 37.037 22.57 10.82 30.40 1.85
2318 4405 6.895756 TGAAGCAGTCTATAGAACCTTCCTAA 59.104 38.462 22.57 11.05 30.40 2.69
2319 4406 6.432581 TGAAGCAGTCTATAGAACCTTCCTA 58.567 40.000 22.57 11.49 30.40 2.94
2320 4407 5.273208 TGAAGCAGTCTATAGAACCTTCCT 58.727 41.667 22.57 8.41 30.40 3.36
2321 4408 5.599999 TGAAGCAGTCTATAGAACCTTCC 57.400 43.478 22.57 12.92 30.40 3.46
2322 4409 5.522097 GCTTGAAGCAGTCTATAGAACCTTC 59.478 44.000 13.09 20.60 41.89 3.46
2323 4410 5.423886 GCTTGAAGCAGTCTATAGAACCTT 58.576 41.667 13.09 7.20 41.89 3.50
2324 4411 4.141824 GGCTTGAAGCAGTCTATAGAACCT 60.142 45.833 19.89 0.00 44.75 3.50
2325 4412 4.123506 GGCTTGAAGCAGTCTATAGAACC 58.876 47.826 19.89 0.00 44.75 3.62
2326 4413 3.799420 CGGCTTGAAGCAGTCTATAGAAC 59.201 47.826 19.89 0.00 44.75 3.01
2327 4414 3.699538 TCGGCTTGAAGCAGTCTATAGAA 59.300 43.478 19.89 0.00 44.75 2.10
2328 4415 3.288092 TCGGCTTGAAGCAGTCTATAGA 58.712 45.455 19.89 0.00 44.75 1.98
2329 4416 3.717400 TCGGCTTGAAGCAGTCTATAG 57.283 47.619 19.89 0.00 44.75 1.31
2330 4417 4.672587 AATCGGCTTGAAGCAGTCTATA 57.327 40.909 19.89 0.00 44.75 1.31
2331 4418 3.550437 AATCGGCTTGAAGCAGTCTAT 57.450 42.857 19.89 1.84 44.75 1.98
2332 4419 3.334583 AAATCGGCTTGAAGCAGTCTA 57.665 42.857 19.89 0.00 44.75 2.59
2333 4420 2.191128 AAATCGGCTTGAAGCAGTCT 57.809 45.000 19.89 4.55 44.75 3.24
2334 4421 2.226437 TCAAAATCGGCTTGAAGCAGTC 59.774 45.455 19.89 0.37 44.75 3.51
2335 4422 2.229792 TCAAAATCGGCTTGAAGCAGT 58.770 42.857 19.89 3.21 44.75 4.40
2336 4423 2.995466 TCAAAATCGGCTTGAAGCAG 57.005 45.000 19.89 15.51 44.75 4.24
2337 4424 3.068024 ACTTTCAAAATCGGCTTGAAGCA 59.932 39.130 19.89 0.00 44.75 3.91
2338 4425 3.642705 ACTTTCAAAATCGGCTTGAAGC 58.357 40.909 9.04 9.04 42.21 3.86
2339 4426 5.979517 AGAAACTTTCAAAATCGGCTTGAAG 59.020 36.000 4.34 0.00 42.21 3.02
2340 4427 5.901552 AGAAACTTTCAAAATCGGCTTGAA 58.098 33.333 4.34 4.14 40.21 2.69
2341 4428 5.514274 AGAAACTTTCAAAATCGGCTTGA 57.486 34.783 4.34 0.00 0.00 3.02
2342 4429 6.588348 AAAGAAACTTTCAAAATCGGCTTG 57.412 33.333 4.34 0.00 0.00 4.01
2343 4430 6.593770 ACAAAAGAAACTTTCAAAATCGGCTT 59.406 30.769 4.34 0.00 0.00 4.35
2344 4431 6.106003 ACAAAAGAAACTTTCAAAATCGGCT 58.894 32.000 4.34 0.00 0.00 5.52
2345 4432 6.035542 TGACAAAAGAAACTTTCAAAATCGGC 59.964 34.615 4.34 0.00 0.00 5.54
2346 4433 7.254084 CCTGACAAAAGAAACTTTCAAAATCGG 60.254 37.037 4.34 1.05 0.00 4.18
2347 4434 7.275560 ACCTGACAAAAGAAACTTTCAAAATCG 59.724 33.333 4.34 0.00 0.00 3.34
2348 4435 8.479313 ACCTGACAAAAGAAACTTTCAAAATC 57.521 30.769 4.34 0.00 0.00 2.17
2349 4436 8.846943 AACCTGACAAAAGAAACTTTCAAAAT 57.153 26.923 4.34 0.00 0.00 1.82
2350 4437 8.669946 AAACCTGACAAAAGAAACTTTCAAAA 57.330 26.923 4.34 0.00 0.00 2.44
2351 4438 8.669946 AAAACCTGACAAAAGAAACTTTCAAA 57.330 26.923 4.34 0.00 0.00 2.69
2352 4439 8.147704 AGAAAACCTGACAAAAGAAACTTTCAA 58.852 29.630 4.34 0.00 0.00 2.69
2353 4440 7.666623 AGAAAACCTGACAAAAGAAACTTTCA 58.333 30.769 4.34 0.00 0.00 2.69
2354 4441 8.435430 CAAGAAAACCTGACAAAAGAAACTTTC 58.565 33.333 0.00 0.00 0.00 2.62
2355 4442 7.387673 CCAAGAAAACCTGACAAAAGAAACTTT 59.612 33.333 0.00 0.00 0.00 2.66
2356 4443 6.873605 CCAAGAAAACCTGACAAAAGAAACTT 59.126 34.615 0.00 0.00 0.00 2.66
2357 4444 6.014584 ACCAAGAAAACCTGACAAAAGAAACT 60.015 34.615 0.00 0.00 0.00 2.66
2358 4445 6.163476 ACCAAGAAAACCTGACAAAAGAAAC 58.837 36.000 0.00 0.00 0.00 2.78
2359 4446 6.353404 ACCAAGAAAACCTGACAAAAGAAA 57.647 33.333 0.00 0.00 0.00 2.52
2360 4447 5.993748 ACCAAGAAAACCTGACAAAAGAA 57.006 34.783 0.00 0.00 0.00 2.52
2361 4448 5.993748 AACCAAGAAAACCTGACAAAAGA 57.006 34.783 0.00 0.00 0.00 2.52
2362 4449 6.873605 AGAAAACCAAGAAAACCTGACAAAAG 59.126 34.615 0.00 0.00 0.00 2.27
2363 4450 6.764379 AGAAAACCAAGAAAACCTGACAAAA 58.236 32.000 0.00 0.00 0.00 2.44
2364 4451 6.353404 AGAAAACCAAGAAAACCTGACAAA 57.647 33.333 0.00 0.00 0.00 2.83
2365 4452 5.993748 AGAAAACCAAGAAAACCTGACAA 57.006 34.783 0.00 0.00 0.00 3.18
2366 4453 5.714806 AGAAGAAAACCAAGAAAACCTGACA 59.285 36.000 0.00 0.00 0.00 3.58
2367 4454 6.208988 AGAAGAAAACCAAGAAAACCTGAC 57.791 37.500 0.00 0.00 0.00 3.51
2368 4455 8.533569 AATAGAAGAAAACCAAGAAAACCTGA 57.466 30.769 0.00 0.00 0.00 3.86
2369 4456 9.599866 AAAATAGAAGAAAACCAAGAAAACCTG 57.400 29.630 0.00 0.00 0.00 4.00
2415 4502 6.605594 AGACTGTCCAAAACCTACATCAAAAA 59.394 34.615 3.76 0.00 0.00 1.94
2416 4503 6.126409 AGACTGTCCAAAACCTACATCAAAA 58.874 36.000 3.76 0.00 0.00 2.44
2417 4504 5.690865 AGACTGTCCAAAACCTACATCAAA 58.309 37.500 3.76 0.00 0.00 2.69
2418 4505 5.304686 AGACTGTCCAAAACCTACATCAA 57.695 39.130 3.76 0.00 0.00 2.57
2419 4506 4.974645 AGACTGTCCAAAACCTACATCA 57.025 40.909 3.76 0.00 0.00 3.07
2420 4507 5.552178 AGAAGACTGTCCAAAACCTACATC 58.448 41.667 3.76 0.00 0.00 3.06
2421 4508 5.568620 AGAAGACTGTCCAAAACCTACAT 57.431 39.130 3.76 0.00 0.00 2.29
2422 4509 5.508489 CGTAGAAGACTGTCCAAAACCTACA 60.508 44.000 3.76 0.00 0.00 2.74
2423 4510 4.922103 CGTAGAAGACTGTCCAAAACCTAC 59.078 45.833 3.76 6.51 0.00 3.18
2424 4511 4.586001 ACGTAGAAGACTGTCCAAAACCTA 59.414 41.667 3.76 0.00 0.00 3.08
2425 4512 3.387050 ACGTAGAAGACTGTCCAAAACCT 59.613 43.478 3.76 0.00 0.00 3.50
2426 4513 3.725490 ACGTAGAAGACTGTCCAAAACC 58.275 45.455 3.76 0.00 0.00 3.27
2427 4514 4.444720 CAGACGTAGAAGACTGTCCAAAAC 59.555 45.833 3.76 0.00 34.27 2.43
2428 4515 4.098960 ACAGACGTAGAAGACTGTCCAAAA 59.901 41.667 3.76 0.00 38.95 2.44
2429 4516 3.635373 ACAGACGTAGAAGACTGTCCAAA 59.365 43.478 3.76 0.00 38.95 3.28
2430 4517 3.220110 ACAGACGTAGAAGACTGTCCAA 58.780 45.455 3.76 0.00 38.95 3.53
2431 4518 2.860009 ACAGACGTAGAAGACTGTCCA 58.140 47.619 3.76 0.00 38.95 4.02
2432 4519 3.919223 AACAGACGTAGAAGACTGTCC 57.081 47.619 3.76 0.00 41.73 4.02
2433 4520 5.041940 ACAAAACAGACGTAGAAGACTGTC 58.958 41.667 5.87 0.00 41.73 3.51
2434 4521 4.804139 CACAAAACAGACGTAGAAGACTGT 59.196 41.667 0.00 0.00 43.92 3.55
2435 4522 4.209288 CCACAAAACAGACGTAGAAGACTG 59.791 45.833 0.00 0.00 36.58 3.51
2436 4523 4.369182 CCACAAAACAGACGTAGAAGACT 58.631 43.478 0.00 0.00 0.00 3.24
2437 4524 3.059800 GCCACAAAACAGACGTAGAAGAC 60.060 47.826 0.00 0.00 0.00 3.01
2438 4525 3.128349 GCCACAAAACAGACGTAGAAGA 58.872 45.455 0.00 0.00 0.00 2.87
2439 4526 3.059597 CAGCCACAAAACAGACGTAGAAG 60.060 47.826 0.00 0.00 0.00 2.85
2440 4527 2.869801 CAGCCACAAAACAGACGTAGAA 59.130 45.455 0.00 0.00 0.00 2.10
2441 4528 2.479837 CAGCCACAAAACAGACGTAGA 58.520 47.619 0.00 0.00 0.00 2.59
2442 4529 1.531149 CCAGCCACAAAACAGACGTAG 59.469 52.381 0.00 0.00 0.00 3.51
2443 4530 1.139256 TCCAGCCACAAAACAGACGTA 59.861 47.619 0.00 0.00 0.00 3.57
2444 4531 0.107410 TCCAGCCACAAAACAGACGT 60.107 50.000 0.00 0.00 0.00 4.34
2445 4532 1.238439 ATCCAGCCACAAAACAGACG 58.762 50.000 0.00 0.00 0.00 4.18
2446 4533 3.319122 AGAAATCCAGCCACAAAACAGAC 59.681 43.478 0.00 0.00 0.00 3.51
2447 4534 3.565307 AGAAATCCAGCCACAAAACAGA 58.435 40.909 0.00 0.00 0.00 3.41
2448 4535 3.571401 AGAGAAATCCAGCCACAAAACAG 59.429 43.478 0.00 0.00 0.00 3.16
2449 4536 3.565307 AGAGAAATCCAGCCACAAAACA 58.435 40.909 0.00 0.00 0.00 2.83
2450 4537 4.590850 AAGAGAAATCCAGCCACAAAAC 57.409 40.909 0.00 0.00 0.00 2.43
2451 4538 5.612725 AAAAGAGAAATCCAGCCACAAAA 57.387 34.783 0.00 0.00 0.00 2.44
2452 4539 5.612725 AAAAAGAGAAATCCAGCCACAAA 57.387 34.783 0.00 0.00 0.00 2.83
2480 4567 9.549078 GGAAAATCCAAACAACCAGTAAATAAA 57.451 29.630 0.00 0.00 36.28 1.40
2481 4568 8.705594 TGGAAAATCCAAACAACCAGTAAATAA 58.294 29.630 0.00 0.00 45.00 1.40
2482 4569 8.251383 TGGAAAATCCAAACAACCAGTAAATA 57.749 30.769 0.00 0.00 45.00 1.40
2483 4570 7.130681 TGGAAAATCCAAACAACCAGTAAAT 57.869 32.000 0.00 0.00 45.00 1.40
2484 4571 6.546428 TGGAAAATCCAAACAACCAGTAAA 57.454 33.333 0.00 0.00 45.00 2.01
2533 4620 9.995003 TCTTTATGCATTCAAAAAGGTACAATT 57.005 25.926 16.09 0.00 31.37 2.32
2534 4621 9.995003 TTCTTTATGCATTCAAAAAGGTACAAT 57.005 25.926 16.09 0.00 31.37 2.71
2535 4622 9.995003 ATTCTTTATGCATTCAAAAAGGTACAA 57.005 25.926 16.09 6.82 31.37 2.41
2563 4650 9.314321 TCGAAAAATGCTAACCATGTTTTAAAA 57.686 25.926 0.00 0.00 40.62 1.52
2564 4651 8.873215 TCGAAAAATGCTAACCATGTTTTAAA 57.127 26.923 0.00 0.00 40.62 1.52
2565 4652 8.873215 TTCGAAAAATGCTAACCATGTTTTAA 57.127 26.923 0.00 0.00 40.62 1.52
2567 4654 7.961325 ATTCGAAAAATGCTAACCATGTTTT 57.039 28.000 0.00 0.00 40.62 2.43
2568 4655 8.085296 TGTATTCGAAAAATGCTAACCATGTTT 58.915 29.630 0.00 0.00 42.68 2.83
2569 4656 7.598278 TGTATTCGAAAAATGCTAACCATGTT 58.402 30.769 0.00 0.00 32.63 2.71
2570 4657 7.151999 TGTATTCGAAAAATGCTAACCATGT 57.848 32.000 0.00 0.00 33.49 3.21
2571 4658 7.914871 TCATGTATTCGAAAAATGCTAACCATG 59.085 33.333 0.00 0.90 33.49 3.66
2572 4659 7.995289 TCATGTATTCGAAAAATGCTAACCAT 58.005 30.769 0.00 0.00 35.06 3.55
2573 4660 7.384439 TCATGTATTCGAAAAATGCTAACCA 57.616 32.000 0.00 0.00 0.00 3.67
2574 4661 8.856490 AATCATGTATTCGAAAAATGCTAACC 57.144 30.769 0.00 0.00 0.00 2.85
2608 4695 9.952030 TGTAGACATCCAAGTATGTATTTGAAA 57.048 29.630 0.00 0.00 40.17 2.69
2616 4703 9.113838 GAATGAAATGTAGACATCCAAGTATGT 57.886 33.333 0.00 0.00 42.75 2.29
2617 4704 9.112725 TGAATGAAATGTAGACATCCAAGTATG 57.887 33.333 0.00 0.00 35.10 2.39
2618 4705 9.857656 ATGAATGAAATGTAGACATCCAAGTAT 57.142 29.630 0.00 0.00 35.10 2.12
2620 4707 9.334947 CTATGAATGAAATGTAGACATCCAAGT 57.665 33.333 0.00 0.00 35.10 3.16
2621 4708 9.551734 TCTATGAATGAAATGTAGACATCCAAG 57.448 33.333 0.00 0.00 35.10 3.61
2622 4709 9.330063 GTCTATGAATGAAATGTAGACATCCAA 57.670 33.333 0.00 0.00 40.42 3.53
2623 4710 8.485392 TGTCTATGAATGAAATGTAGACATCCA 58.515 33.333 8.89 0.00 43.56 3.41
2624 4711 8.893219 TGTCTATGAATGAAATGTAGACATCC 57.107 34.615 8.89 0.00 43.56 3.51
2716 4803 9.888878 CATATATTCGAAGATGTTGAAAAGCAT 57.111 29.630 15.34 0.00 35.04 3.79
2717 4804 8.892723 ACATATATTCGAAGATGTTGAAAAGCA 58.107 29.630 15.34 0.00 35.04 3.91
2718 4805 9.722056 AACATATATTCGAAGATGTTGAAAAGC 57.278 29.630 24.06 0.00 40.19 3.51
2723 4810 9.377312 TGTTGAACATATATTCGAAGATGTTGA 57.623 29.630 27.28 20.97 41.40 3.18
2752 4839 9.897744 GAGAAATGTTCAACATGTATCTGAAAA 57.102 29.630 15.05 8.24 37.97 2.29
2753 4840 9.288576 AGAGAAATGTTCAACATGTATCTGAAA 57.711 29.630 15.78 5.10 41.44 2.69
2754 4841 8.853077 AGAGAAATGTTCAACATGTATCTGAA 57.147 30.769 15.78 7.25 41.44 3.02
2757 4844 8.099537 AGTCAGAGAAATGTTCAACATGTATCT 58.900 33.333 11.49 11.49 43.18 1.98
2758 4845 8.173775 CAGTCAGAGAAATGTTCAACATGTATC 58.826 37.037 7.18 7.18 37.97 2.24
2759 4846 7.879677 TCAGTCAGAGAAATGTTCAACATGTAT 59.120 33.333 3.07 0.00 37.97 2.29
2760 4847 7.216494 TCAGTCAGAGAAATGTTCAACATGTA 58.784 34.615 3.07 0.00 37.97 2.29
2761 4848 6.057533 TCAGTCAGAGAAATGTTCAACATGT 58.942 36.000 3.07 0.00 37.97 3.21
2762 4849 6.549912 TCAGTCAGAGAAATGTTCAACATG 57.450 37.500 3.07 0.00 37.97 3.21
2763 4850 8.853077 TTATCAGTCAGAGAAATGTTCAACAT 57.147 30.769 0.00 0.00 41.31 2.71
2764 4851 8.559536 GTTTATCAGTCAGAGAAATGTTCAACA 58.440 33.333 0.00 0.00 39.41 3.33
2765 4852 8.559536 TGTTTATCAGTCAGAGAAATGTTCAAC 58.440 33.333 0.00 0.00 39.41 3.18
2766 4853 8.675705 TGTTTATCAGTCAGAGAAATGTTCAA 57.324 30.769 0.00 0.00 39.41 2.69
2767 4854 8.675705 TTGTTTATCAGTCAGAGAAATGTTCA 57.324 30.769 0.00 0.00 39.41 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.