Multiple sequence alignment - TraesCS3B01G181500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G181500 chr3B 100.000 4078 0 0 2183 6260 190469628 190473705 0.000000e+00 7531.0
1 TraesCS3B01G181500 chr3B 100.000 1705 0 0 1 1705 190467446 190469150 0.000000e+00 3149.0
2 TraesCS3B01G181500 chr3A 94.710 2590 85 22 2183 4751 147790237 147792795 0.000000e+00 3976.0
3 TraesCS3B01G181500 chr3A 92.950 1234 45 22 5055 6258 147792813 147794034 0.000000e+00 1759.0
4 TraesCS3B01G181500 chr3A 93.756 977 39 15 741 1702 147789221 147790190 0.000000e+00 1447.0
5 TraesCS3B01G181500 chr3A 100.000 31 0 0 4665 4695 147792793 147792823 2.440000e-04 58.4
6 TraesCS3B01G181500 chr3D 94.879 2187 68 19 3983 6139 134085687 134087859 0.000000e+00 3378.0
7 TraesCS3B01G181500 chr3D 93.923 1481 40 6 2183 3662 134082339 134083770 0.000000e+00 2191.0
8 TraesCS3B01G181500 chr3D 93.148 1153 54 12 556 1702 134081153 134082286 0.000000e+00 1668.0
9 TraesCS3B01G181500 chr3D 97.436 351 7 2 3642 3991 134083947 134084296 1.160000e-166 597.0
10 TraesCS3B01G181500 chr3D 93.966 116 2 3 6148 6258 134093168 134093283 3.000000e-38 171.0
11 TraesCS3B01G181500 chr3D 78.862 123 15 6 5666 5787 19326753 19326641 8.700000e-09 73.1
12 TraesCS3B01G181500 chr2B 97.802 91 2 0 469 559 672746756 672746666 2.340000e-34 158.0
13 TraesCS3B01G181500 chr2B 98.864 88 1 0 472 559 774106647 774106560 2.340000e-34 158.0
14 TraesCS3B01G181500 chr2D 95.745 94 4 0 466 559 384255179 384255272 1.090000e-32 152.0
15 TraesCS3B01G181500 chr1A 93.069 101 7 0 461 561 28616315 28616415 1.410000e-31 148.0
16 TraesCS3B01G181500 chr1A 79.675 123 15 8 5665 5787 348691886 348691774 5.200000e-11 80.5
17 TraesCS3B01G181500 chr1A 93.750 48 2 1 5665 5711 482792471 482792518 3.130000e-08 71.3
18 TraesCS3B01G181500 chr1A 94.444 36 2 0 412 447 443137394 443137429 8.770000e-04 56.5
19 TraesCS3B01G181500 chr4B 93.137 102 4 2 460 560 438223740 438223839 5.060000e-31 147.0
20 TraesCS3B01G181500 chr5D 92.308 104 5 3 474 576 7421459 7421560 1.820000e-30 145.0
21 TraesCS3B01G181500 chr5D 94.915 59 3 0 3516 3574 460394256 460394198 6.680000e-15 93.5
22 TraesCS3B01G181500 chr2A 92.308 104 5 3 474 576 767024077 767023976 1.820000e-30 145.0
23 TraesCS3B01G181500 chr7A 90.090 111 8 3 472 581 699348324 699348432 2.350000e-29 141.0
24 TraesCS3B01G181500 chr7A 91.250 80 4 2 2831 2907 353917951 353917872 8.580000e-19 106.0
25 TraesCS3B01G181500 chr7A 89.157 83 6 2 2830 2909 353917867 353917949 3.990000e-17 100.0
26 TraesCS3B01G181500 chr7A 81.651 109 13 2 5662 5770 215185192 215185293 4.020000e-12 84.2
27 TraesCS3B01G181500 chr7A 100.000 34 0 0 411 444 707690240 707690273 5.240000e-06 63.9
28 TraesCS3B01G181500 chr7A 100.000 34 0 0 411 444 710614462 710614429 5.240000e-06 63.9
29 TraesCS3B01G181500 chr1D 91.919 99 7 1 462 559 320727883 320727785 3.040000e-28 137.0
30 TraesCS3B01G181500 chr7D 92.593 81 2 3 2830 2907 305134827 305134748 5.130000e-21 113.0
31 TraesCS3B01G181500 chr7D 86.420 81 6 3 2830 2907 378496466 378496544 4.020000e-12 84.2
32 TraesCS3B01G181500 chr5A 90.698 86 5 2 2830 2912 315267778 315267693 1.840000e-20 111.0
33 TraesCS3B01G181500 chr5A 96.429 56 2 0 3516 3571 580465650 580465595 6.680000e-15 93.5
34 TraesCS3B01G181500 chr5A 80.488 123 15 7 5592 5711 599452174 599452290 1.120000e-12 86.1
35 TraesCS3B01G181500 chr7B 91.358 81 4 2 2830 2907 290078017 290078097 2.390000e-19 108.0
36 TraesCS3B01G181500 chr7B 88.372 86 7 2 2830 2912 290078102 290078017 3.990000e-17 100.0
37 TraesCS3B01G181500 chr5B 79.042 167 28 7 5623 5787 382897246 382897407 2.390000e-19 108.0
38 TraesCS3B01G181500 chr5B 94.915 59 3 0 3516 3574 565929584 565929526 6.680000e-15 93.5
39 TraesCS3B01G181500 chr6A 77.108 166 26 7 5623 5787 106983888 106984042 1.120000e-12 86.1
40 TraesCS3B01G181500 chr6B 82.609 92 14 2 2829 2919 68850726 68850636 5.200000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G181500 chr3B 190467446 190473705 6259 False 5340.0 7531 100.0000 1 6260 2 chr3B.!!$F1 6259
1 TraesCS3B01G181500 chr3A 147789221 147794034 4813 False 1810.1 3976 95.3540 741 6258 4 chr3A.!!$F1 5517
2 TraesCS3B01G181500 chr3D 134081153 134087859 6706 False 1958.5 3378 94.8465 556 6139 4 chr3D.!!$F2 5583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.035152 TCGCTGGGAGCATGTTGAAT 60.035 50.000 0.00 0.0 42.58 2.57 F
191 192 0.035739 TTAGTTGGGTTGGTCGCTCC 59.964 55.000 0.00 0.0 0.00 4.70 F
232 233 0.103937 CTAGCAAAGGAGCGAGGGAG 59.896 60.000 0.00 0.0 40.15 4.30 F
235 236 0.249398 GCAAAGGAGCGAGGGAGTTA 59.751 55.000 0.00 0.0 0.00 2.24 F
388 389 0.397564 AAAAACTCCGCCGTCCCTAA 59.602 50.000 0.00 0.0 0.00 2.69 F
389 390 0.397564 AAAACTCCGCCGTCCCTAAA 59.602 50.000 0.00 0.0 0.00 1.85 F
1657 1686 0.609406 GTTCAGGAGTTTGGAGGGGC 60.609 60.000 0.00 0.0 0.00 5.80 F
1661 1690 0.772124 AGGAGTTTGGAGGGGCAGAA 60.772 55.000 0.00 0.0 0.00 3.02 F
2227 2256 1.451449 TTGGGAAACTAAGGAGGGCA 58.549 50.000 0.00 0.0 0.00 5.36 F
2888 2917 1.130561 CACTTTACTAAAGCTGCGGCC 59.869 52.381 15.55 0.0 42.27 6.13 F
4268 5901 0.321564 TTGCAGGATGTTCACCGAGG 60.322 55.000 0.00 0.0 39.31 4.63 F
4486 6128 3.127533 CTTGAGCGGGAAAGCGGG 61.128 66.667 0.00 0.0 43.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1632 0.238289 ATCAAGCCGAGTGCAAAACG 59.762 50.000 0.00 0.0 44.83 3.60 R
1612 1633 1.537202 AGATCAAGCCGAGTGCAAAAC 59.463 47.619 0.00 0.0 44.83 2.43 R
1613 1634 1.896220 AGATCAAGCCGAGTGCAAAA 58.104 45.000 0.00 0.0 44.83 2.44 R
1614 1635 2.760634 TAGATCAAGCCGAGTGCAAA 57.239 45.000 0.00 0.0 44.83 3.68 R
2357 2386 1.301423 ACGCGAGTTAAAAGCAACCA 58.699 45.000 15.93 0.0 46.40 3.67 R
2374 2403 7.042992 TCGTTTGGCTATATGAAGTTATGAACG 60.043 37.037 0.00 0.0 36.10 3.95 R
2642 2671 0.958382 GCGCCACAACCATGTCCTTA 60.958 55.000 0.00 0.0 37.82 2.69 R
2886 2915 2.558359 CCCTCCGATCCAAATTAATGGC 59.442 50.000 0.00 0.0 40.46 4.40 R
3724 3951 3.941483 CGAGTTCATTTTATCTGGGTGCT 59.059 43.478 0.00 0.0 0.00 4.40 R
4306 5939 1.072266 TGGACATACCAAGCCCAACT 58.928 50.000 0.00 0.0 46.75 3.16 R
5127 6775 1.076995 GGATGGTGCAGGTTACCCC 60.077 63.158 0.00 0.0 37.40 4.95 R
6221 7897 1.103398 AACCAGCGGATATGCAAGGC 61.103 55.000 0.00 0.0 36.21 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.268280 CCTCAGCAGGCAGTCCAG 59.732 66.667 0.00 0.00 30.98 3.86
19 20 2.436292 CTCAGCAGGCAGTCCAGC 60.436 66.667 0.00 0.00 44.38 4.85
26 27 4.643387 GGCAGTCCAGCCGGTTGT 62.643 66.667 17.69 0.00 46.12 3.32
27 28 3.357079 GCAGTCCAGCCGGTTGTG 61.357 66.667 17.69 10.10 0.00 3.33
28 29 2.111043 CAGTCCAGCCGGTTGTGT 59.889 61.111 17.69 0.00 0.00 3.72
29 30 1.369692 CAGTCCAGCCGGTTGTGTA 59.630 57.895 17.69 0.00 0.00 2.90
30 31 0.670546 CAGTCCAGCCGGTTGTGTAG 60.671 60.000 17.69 1.60 0.00 2.74
31 32 0.830444 AGTCCAGCCGGTTGTGTAGA 60.830 55.000 17.69 4.20 0.00 2.59
32 33 0.669625 GTCCAGCCGGTTGTGTAGAC 60.670 60.000 17.69 12.86 0.00 2.59
33 34 1.736645 CCAGCCGGTTGTGTAGACG 60.737 63.158 17.69 0.00 0.00 4.18
34 35 1.287815 CAGCCGGTTGTGTAGACGA 59.712 57.895 10.61 0.00 0.00 4.20
35 36 0.319211 CAGCCGGTTGTGTAGACGAA 60.319 55.000 10.61 0.00 0.00 3.85
36 37 0.390124 AGCCGGTTGTGTAGACGAAA 59.610 50.000 1.90 0.00 0.00 3.46
37 38 0.788391 GCCGGTTGTGTAGACGAAAG 59.212 55.000 1.90 0.00 0.00 2.62
62 63 5.013861 CAAAATTGCACATTGAGCTTGAC 57.986 39.130 7.58 0.00 0.00 3.18
63 64 4.595762 AAATTGCACATTGAGCTTGACT 57.404 36.364 7.58 0.00 0.00 3.41
64 65 3.570926 ATTGCACATTGAGCTTGACTG 57.429 42.857 7.58 0.00 0.00 3.51
65 66 0.594602 TGCACATTGAGCTTGACTGC 59.405 50.000 7.58 0.00 0.00 4.40
66 67 0.594602 GCACATTGAGCTTGACTGCA 59.405 50.000 0.00 0.00 34.99 4.41
67 68 1.001048 GCACATTGAGCTTGACTGCAA 60.001 47.619 0.00 0.00 34.99 4.08
74 75 4.368391 CTTGACTGCAAGGTCGCT 57.632 55.556 2.07 0.00 46.13 4.93
75 76 1.864862 CTTGACTGCAAGGTCGCTG 59.135 57.895 2.07 0.00 46.13 5.18
76 77 1.572085 CTTGACTGCAAGGTCGCTGG 61.572 60.000 2.07 0.00 46.13 4.85
77 78 2.743928 GACTGCAAGGTCGCTGGG 60.744 66.667 0.00 0.00 39.30 4.45
78 79 3.240134 GACTGCAAGGTCGCTGGGA 62.240 63.158 0.00 0.00 39.30 4.37
79 80 2.435586 CTGCAAGGTCGCTGGGAG 60.436 66.667 0.00 0.00 0.00 4.30
80 81 4.704833 TGCAAGGTCGCTGGGAGC 62.705 66.667 15.11 15.11 43.56 4.70
81 82 4.704833 GCAAGGTCGCTGGGAGCA 62.705 66.667 23.05 0.00 45.66 4.26
82 83 2.270205 CAAGGTCGCTGGGAGCAT 59.730 61.111 23.05 10.86 45.66 3.79
83 84 2.110967 CAAGGTCGCTGGGAGCATG 61.111 63.158 23.05 18.16 45.66 4.06
84 85 2.596851 AAGGTCGCTGGGAGCATGT 61.597 57.895 23.05 7.62 45.66 3.21
85 86 2.045926 GGTCGCTGGGAGCATGTT 60.046 61.111 17.55 0.00 42.58 2.71
86 87 2.401766 GGTCGCTGGGAGCATGTTG 61.402 63.158 17.55 0.00 42.58 3.33
87 88 1.375908 GTCGCTGGGAGCATGTTGA 60.376 57.895 0.00 0.00 42.58 3.18
88 89 0.955428 GTCGCTGGGAGCATGTTGAA 60.955 55.000 0.00 0.00 42.58 2.69
89 90 0.035152 TCGCTGGGAGCATGTTGAAT 60.035 50.000 0.00 0.00 42.58 2.57
90 91 0.099968 CGCTGGGAGCATGTTGAATG 59.900 55.000 0.00 0.00 42.58 2.67
91 92 1.466856 GCTGGGAGCATGTTGAATGA 58.533 50.000 0.00 0.00 41.89 2.57
92 93 2.029623 GCTGGGAGCATGTTGAATGAT 58.970 47.619 0.00 0.00 41.89 2.45
93 94 3.216800 GCTGGGAGCATGTTGAATGATA 58.783 45.455 0.00 0.00 41.89 2.15
94 95 3.004106 GCTGGGAGCATGTTGAATGATAC 59.996 47.826 0.00 0.00 41.89 2.24
95 96 3.554934 TGGGAGCATGTTGAATGATACC 58.445 45.455 0.00 0.00 38.85 2.73
96 97 2.549754 GGGAGCATGTTGAATGATACCG 59.450 50.000 0.00 0.00 27.67 4.02
97 98 2.549754 GGAGCATGTTGAATGATACCGG 59.450 50.000 0.00 0.00 0.00 5.28
98 99 3.466836 GAGCATGTTGAATGATACCGGA 58.533 45.455 9.46 0.00 0.00 5.14
99 100 3.876914 GAGCATGTTGAATGATACCGGAA 59.123 43.478 9.46 0.00 0.00 4.30
100 101 4.269183 AGCATGTTGAATGATACCGGAAA 58.731 39.130 9.46 0.00 0.00 3.13
101 102 4.336433 AGCATGTTGAATGATACCGGAAAG 59.664 41.667 9.46 0.00 0.00 2.62
102 103 4.335315 GCATGTTGAATGATACCGGAAAGA 59.665 41.667 9.46 0.00 0.00 2.52
103 104 5.163663 GCATGTTGAATGATACCGGAAAGAA 60.164 40.000 9.46 0.00 0.00 2.52
104 105 6.460123 GCATGTTGAATGATACCGGAAAGAAT 60.460 38.462 9.46 0.00 0.00 2.40
105 106 7.483307 CATGTTGAATGATACCGGAAAGAATT 58.517 34.615 9.46 0.65 0.00 2.17
106 107 7.461182 TGTTGAATGATACCGGAAAGAATTT 57.539 32.000 9.46 0.00 43.98 1.82
107 108 8.568676 TGTTGAATGATACCGGAAAGAATTTA 57.431 30.769 9.46 0.00 39.27 1.40
108 109 9.184523 TGTTGAATGATACCGGAAAGAATTTAT 57.815 29.630 9.46 0.00 39.27 1.40
112 113 8.871686 AATGATACCGGAAAGAATTTATTTGC 57.128 30.769 9.46 0.00 39.27 3.68
113 114 7.639113 TGATACCGGAAAGAATTTATTTGCT 57.361 32.000 9.46 0.00 39.27 3.91
114 115 7.479980 TGATACCGGAAAGAATTTATTTGCTG 58.520 34.615 9.46 2.95 39.27 4.41
115 116 5.722021 ACCGGAAAGAATTTATTTGCTGT 57.278 34.783 9.46 3.50 39.27 4.40
116 117 6.827586 ACCGGAAAGAATTTATTTGCTGTA 57.172 33.333 9.46 0.00 39.27 2.74
117 118 6.852664 ACCGGAAAGAATTTATTTGCTGTAG 58.147 36.000 9.46 0.00 39.27 2.74
118 119 6.127730 ACCGGAAAGAATTTATTTGCTGTAGG 60.128 38.462 9.46 3.28 39.27 3.18
119 120 6.265577 CGGAAAGAATTTATTTGCTGTAGGG 58.734 40.000 6.47 0.00 39.27 3.53
120 121 6.042777 GGAAAGAATTTATTTGCTGTAGGGC 58.957 40.000 1.33 0.00 39.27 5.19
121 122 5.598416 AAGAATTTATTTGCTGTAGGGCC 57.402 39.130 0.00 0.00 0.00 5.80
122 123 3.632145 AGAATTTATTTGCTGTAGGGCCG 59.368 43.478 0.00 0.00 0.00 6.13
123 124 1.757682 TTTATTTGCTGTAGGGCCGG 58.242 50.000 0.00 0.00 0.00 6.13
124 125 0.621609 TTATTTGCTGTAGGGCCGGT 59.378 50.000 1.90 0.00 0.00 5.28
125 126 0.107410 TATTTGCTGTAGGGCCGGTG 60.107 55.000 1.90 0.00 0.00 4.94
126 127 1.847798 ATTTGCTGTAGGGCCGGTGA 61.848 55.000 1.90 0.00 0.00 4.02
127 128 1.847798 TTTGCTGTAGGGCCGGTGAT 61.848 55.000 1.90 0.00 0.00 3.06
128 129 0.978667 TTGCTGTAGGGCCGGTGATA 60.979 55.000 1.90 0.00 0.00 2.15
129 130 1.367840 GCTGTAGGGCCGGTGATAG 59.632 63.158 1.90 0.00 0.00 2.08
130 131 1.113517 GCTGTAGGGCCGGTGATAGA 61.114 60.000 1.90 0.00 0.00 1.98
131 132 1.410004 CTGTAGGGCCGGTGATAGAA 58.590 55.000 1.90 0.00 0.00 2.10
132 133 1.341531 CTGTAGGGCCGGTGATAGAAG 59.658 57.143 1.90 0.00 0.00 2.85
133 134 1.063492 TGTAGGGCCGGTGATAGAAGA 60.063 52.381 1.90 0.00 0.00 2.87
134 135 2.037144 GTAGGGCCGGTGATAGAAGAA 58.963 52.381 1.90 0.00 0.00 2.52
135 136 1.580059 AGGGCCGGTGATAGAAGAAA 58.420 50.000 1.90 0.00 0.00 2.52
136 137 2.127708 AGGGCCGGTGATAGAAGAAAT 58.872 47.619 1.90 0.00 0.00 2.17
137 138 2.104963 AGGGCCGGTGATAGAAGAAATC 59.895 50.000 1.90 0.00 0.00 2.17
138 139 2.158813 GGGCCGGTGATAGAAGAAATCA 60.159 50.000 1.90 0.00 0.00 2.57
139 140 3.541632 GGCCGGTGATAGAAGAAATCAA 58.458 45.455 1.90 0.00 35.23 2.57
140 141 4.137543 GGCCGGTGATAGAAGAAATCAAT 58.862 43.478 1.90 0.00 35.23 2.57
141 142 4.023707 GGCCGGTGATAGAAGAAATCAATG 60.024 45.833 1.90 0.00 35.23 2.82
142 143 4.555511 GCCGGTGATAGAAGAAATCAATGC 60.556 45.833 1.90 0.00 35.23 3.56
143 144 4.576053 CCGGTGATAGAAGAAATCAATGCA 59.424 41.667 0.00 0.00 35.23 3.96
144 145 5.504665 CCGGTGATAGAAGAAATCAATGCAC 60.505 44.000 0.00 0.00 35.23 4.57
145 146 5.295292 CGGTGATAGAAGAAATCAATGCACT 59.705 40.000 0.00 0.00 35.23 4.40
146 147 6.493116 GGTGATAGAAGAAATCAATGCACTG 58.507 40.000 0.00 0.00 35.23 3.66
147 148 6.459298 GGTGATAGAAGAAATCAATGCACTGG 60.459 42.308 0.00 0.00 35.23 4.00
148 149 6.094603 GTGATAGAAGAAATCAATGCACTGGT 59.905 38.462 0.00 0.00 35.23 4.00
149 150 7.280876 GTGATAGAAGAAATCAATGCACTGGTA 59.719 37.037 0.00 0.00 35.23 3.25
150 151 5.886960 AGAAGAAATCAATGCACTGGTAC 57.113 39.130 0.00 0.00 0.00 3.34
151 152 4.393062 AGAAGAAATCAATGCACTGGTACG 59.607 41.667 0.00 0.00 0.00 3.67
152 153 3.937814 AGAAATCAATGCACTGGTACGA 58.062 40.909 0.00 0.00 0.00 3.43
153 154 3.935203 AGAAATCAATGCACTGGTACGAG 59.065 43.478 2.98 2.98 0.00 4.18
154 155 1.656652 ATCAATGCACTGGTACGAGC 58.343 50.000 4.60 0.00 0.00 5.03
155 156 0.608130 TCAATGCACTGGTACGAGCT 59.392 50.000 4.60 0.00 0.00 4.09
156 157 1.002366 CAATGCACTGGTACGAGCTC 58.998 55.000 2.73 2.73 0.00 4.09
157 158 0.458543 AATGCACTGGTACGAGCTCG 60.459 55.000 33.45 33.45 46.33 5.03
170 171 3.479505 CGAGCTCGTCTGGATTATAGG 57.520 52.381 27.79 0.00 34.11 2.57
171 172 2.162608 CGAGCTCGTCTGGATTATAGGG 59.837 54.545 27.79 0.00 34.11 3.53
172 173 3.158676 GAGCTCGTCTGGATTATAGGGT 58.841 50.000 0.00 0.00 0.00 4.34
173 174 3.574826 GAGCTCGTCTGGATTATAGGGTT 59.425 47.826 0.00 0.00 0.00 4.11
174 175 4.737578 AGCTCGTCTGGATTATAGGGTTA 58.262 43.478 0.00 0.00 0.00 2.85
175 176 4.767928 AGCTCGTCTGGATTATAGGGTTAG 59.232 45.833 0.00 0.00 0.00 2.34
176 177 4.523558 GCTCGTCTGGATTATAGGGTTAGT 59.476 45.833 0.00 0.00 0.00 2.24
177 178 5.010820 GCTCGTCTGGATTATAGGGTTAGTT 59.989 44.000 0.00 0.00 0.00 2.24
178 179 6.401047 TCGTCTGGATTATAGGGTTAGTTG 57.599 41.667 0.00 0.00 0.00 3.16
179 180 5.303589 TCGTCTGGATTATAGGGTTAGTTGG 59.696 44.000 0.00 0.00 0.00 3.77
180 181 5.510861 CGTCTGGATTATAGGGTTAGTTGGG 60.511 48.000 0.00 0.00 0.00 4.12
181 182 5.368816 GTCTGGATTATAGGGTTAGTTGGGT 59.631 44.000 0.00 0.00 0.00 4.51
182 183 5.974370 TCTGGATTATAGGGTTAGTTGGGTT 59.026 40.000 0.00 0.00 0.00 4.11
183 184 6.008696 TGGATTATAGGGTTAGTTGGGTTG 57.991 41.667 0.00 0.00 0.00 3.77
184 185 5.103855 TGGATTATAGGGTTAGTTGGGTTGG 60.104 44.000 0.00 0.00 0.00 3.77
185 186 5.103813 GGATTATAGGGTTAGTTGGGTTGGT 60.104 44.000 0.00 0.00 0.00 3.67
186 187 5.440207 TTATAGGGTTAGTTGGGTTGGTC 57.560 43.478 0.00 0.00 0.00 4.02
187 188 0.399075 AGGGTTAGTTGGGTTGGTCG 59.601 55.000 0.00 0.00 0.00 4.79
188 189 1.239296 GGGTTAGTTGGGTTGGTCGC 61.239 60.000 0.00 0.00 0.00 5.19
189 190 0.250597 GGTTAGTTGGGTTGGTCGCT 60.251 55.000 0.00 0.00 0.00 4.93
190 191 1.154197 GTTAGTTGGGTTGGTCGCTC 58.846 55.000 0.00 0.00 0.00 5.03
191 192 0.035739 TTAGTTGGGTTGGTCGCTCC 59.964 55.000 0.00 0.00 0.00 4.70
192 193 2.162338 TAGTTGGGTTGGTCGCTCCG 62.162 60.000 0.00 0.00 39.52 4.63
197 198 2.746277 GTTGGTCGCTCCGCCAAT 60.746 61.111 13.51 0.00 41.74 3.16
198 199 2.745884 TTGGTCGCTCCGCCAATG 60.746 61.111 8.62 0.00 37.80 2.82
201 202 3.869272 GTCGCTCCGCCAATGCTG 61.869 66.667 0.00 0.00 34.43 4.41
209 210 3.524606 GCCAATGCTGCGCCTCAT 61.525 61.111 4.18 5.16 33.53 2.90
210 211 2.411701 CCAATGCTGCGCCTCATG 59.588 61.111 4.18 0.00 0.00 3.07
211 212 2.278596 CAATGCTGCGCCTCATGC 60.279 61.111 4.18 1.97 0.00 4.06
229 230 4.116878 GCTAGCAAAGGAGCGAGG 57.883 61.111 10.63 0.00 37.66 4.63
230 231 1.522580 GCTAGCAAAGGAGCGAGGG 60.523 63.158 10.63 0.00 37.66 4.30
231 232 1.961180 GCTAGCAAAGGAGCGAGGGA 61.961 60.000 10.63 0.00 37.66 4.20
232 233 0.103937 CTAGCAAAGGAGCGAGGGAG 59.896 60.000 0.00 0.00 40.15 4.30
233 234 0.614979 TAGCAAAGGAGCGAGGGAGT 60.615 55.000 0.00 0.00 40.15 3.85
234 235 1.003233 GCAAAGGAGCGAGGGAGTT 60.003 57.895 0.00 0.00 0.00 3.01
235 236 0.249398 GCAAAGGAGCGAGGGAGTTA 59.751 55.000 0.00 0.00 0.00 2.24
236 237 1.338769 GCAAAGGAGCGAGGGAGTTAA 60.339 52.381 0.00 0.00 0.00 2.01
237 238 2.681097 GCAAAGGAGCGAGGGAGTTAAT 60.681 50.000 0.00 0.00 0.00 1.40
238 239 3.431766 GCAAAGGAGCGAGGGAGTTAATA 60.432 47.826 0.00 0.00 0.00 0.98
239 240 4.766375 CAAAGGAGCGAGGGAGTTAATAA 58.234 43.478 0.00 0.00 0.00 1.40
240 241 5.368989 CAAAGGAGCGAGGGAGTTAATAAT 58.631 41.667 0.00 0.00 0.00 1.28
241 242 6.522054 CAAAGGAGCGAGGGAGTTAATAATA 58.478 40.000 0.00 0.00 0.00 0.98
242 243 6.742559 AAGGAGCGAGGGAGTTAATAATAA 57.257 37.500 0.00 0.00 0.00 1.40
243 244 6.742559 AGGAGCGAGGGAGTTAATAATAAA 57.257 37.500 0.00 0.00 0.00 1.40
244 245 6.522946 AGGAGCGAGGGAGTTAATAATAAAC 58.477 40.000 0.00 0.00 0.00 2.01
245 246 6.326843 AGGAGCGAGGGAGTTAATAATAAACT 59.673 38.462 0.00 0.00 39.84 2.66
246 247 7.508296 AGGAGCGAGGGAGTTAATAATAAACTA 59.492 37.037 0.00 0.00 37.31 2.24
247 248 8.312564 GGAGCGAGGGAGTTAATAATAAACTAT 58.687 37.037 0.00 0.00 37.31 2.12
248 249 9.141400 GAGCGAGGGAGTTAATAATAAACTATG 57.859 37.037 0.00 0.00 37.31 2.23
249 250 8.648693 AGCGAGGGAGTTAATAATAAACTATGT 58.351 33.333 0.00 0.00 37.31 2.29
250 251 9.918630 GCGAGGGAGTTAATAATAAACTATGTA 57.081 33.333 0.00 0.00 37.31 2.29
262 263 9.694137 ATAATAAACTATGTAAGCTCTCGTTCC 57.306 33.333 0.00 0.00 0.00 3.62
263 264 5.401531 AAACTATGTAAGCTCTCGTTCCA 57.598 39.130 0.00 0.00 0.00 3.53
264 265 4.373348 ACTATGTAAGCTCTCGTTCCAC 57.627 45.455 0.00 0.00 0.00 4.02
265 266 3.762288 ACTATGTAAGCTCTCGTTCCACA 59.238 43.478 0.00 0.00 0.00 4.17
266 267 3.895232 ATGTAAGCTCTCGTTCCACAT 57.105 42.857 0.00 0.00 0.00 3.21
267 268 3.678056 TGTAAGCTCTCGTTCCACATT 57.322 42.857 0.00 0.00 0.00 2.71
268 269 3.585862 TGTAAGCTCTCGTTCCACATTC 58.414 45.455 0.00 0.00 0.00 2.67
269 270 3.258372 TGTAAGCTCTCGTTCCACATTCT 59.742 43.478 0.00 0.00 0.00 2.40
270 271 4.461431 TGTAAGCTCTCGTTCCACATTCTA 59.539 41.667 0.00 0.00 0.00 2.10
271 272 3.791973 AGCTCTCGTTCCACATTCTAG 57.208 47.619 0.00 0.00 0.00 2.43
272 273 2.159170 AGCTCTCGTTCCACATTCTAGC 60.159 50.000 0.00 0.00 0.00 3.42
273 274 2.417379 GCTCTCGTTCCACATTCTAGCA 60.417 50.000 0.00 0.00 0.00 3.49
274 275 3.849911 CTCTCGTTCCACATTCTAGCAA 58.150 45.455 0.00 0.00 0.00 3.91
275 276 4.245660 CTCTCGTTCCACATTCTAGCAAA 58.754 43.478 0.00 0.00 0.00 3.68
276 277 4.245660 TCTCGTTCCACATTCTAGCAAAG 58.754 43.478 0.00 0.00 0.00 2.77
277 278 3.997021 CTCGTTCCACATTCTAGCAAAGT 59.003 43.478 0.00 0.00 0.00 2.66
278 279 5.047590 TCTCGTTCCACATTCTAGCAAAGTA 60.048 40.000 0.00 0.00 0.00 2.24
279 280 5.730550 TCGTTCCACATTCTAGCAAAGTAT 58.269 37.500 0.00 0.00 0.00 2.12
280 281 5.580691 TCGTTCCACATTCTAGCAAAGTATG 59.419 40.000 4.75 4.75 38.56 2.39
281 282 5.351465 CGTTCCACATTCTAGCAAAGTATGT 59.649 40.000 5.78 5.78 44.42 2.29
282 283 6.128282 CGTTCCACATTCTAGCAAAGTATGTT 60.128 38.462 8.12 0.00 41.84 2.71
283 284 7.064134 CGTTCCACATTCTAGCAAAGTATGTTA 59.936 37.037 8.12 0.17 41.84 2.41
284 285 7.843490 TCCACATTCTAGCAAAGTATGTTAC 57.157 36.000 8.12 0.00 41.84 2.50
285 286 6.821665 TCCACATTCTAGCAAAGTATGTTACC 59.178 38.462 8.12 0.00 41.84 2.85
286 287 6.823689 CCACATTCTAGCAAAGTATGTTACCT 59.176 38.462 8.12 0.00 41.84 3.08
287 288 7.336931 CCACATTCTAGCAAAGTATGTTACCTT 59.663 37.037 8.12 0.00 41.84 3.50
288 289 9.378551 CACATTCTAGCAAAGTATGTTACCTTA 57.621 33.333 8.12 0.00 41.84 2.69
289 290 9.953565 ACATTCTAGCAAAGTATGTTACCTTAA 57.046 29.630 5.78 0.00 41.84 1.85
316 317 9.801873 AAAACATATATAAAACACATGCTCCAC 57.198 29.630 0.00 0.00 0.00 4.02
317 318 8.518430 AACATATATAAAACACATGCTCCACA 57.482 30.769 0.00 0.00 0.00 4.17
318 319 8.696043 ACATATATAAAACACATGCTCCACAT 57.304 30.769 0.00 0.00 40.66 3.21
319 320 9.791801 ACATATATAAAACACATGCTCCACATA 57.208 29.630 0.00 0.00 36.64 2.29
321 322 9.791801 ATATATAAAACACATGCTCCACATACA 57.208 29.630 0.00 0.00 36.64 2.29
322 323 6.832520 ATAAAACACATGCTCCACATACAA 57.167 33.333 0.00 0.00 36.64 2.41
323 324 5.528043 AAAACACATGCTCCACATACAAA 57.472 34.783 0.00 0.00 36.64 2.83
324 325 5.528043 AAACACATGCTCCACATACAAAA 57.472 34.783 0.00 0.00 36.64 2.44
325 326 5.528043 AACACATGCTCCACATACAAAAA 57.472 34.783 0.00 0.00 36.64 1.94
326 327 5.726980 ACACATGCTCCACATACAAAAAT 57.273 34.783 0.00 0.00 36.64 1.82
327 328 6.832520 ACACATGCTCCACATACAAAAATA 57.167 33.333 0.00 0.00 36.64 1.40
328 329 7.408756 ACACATGCTCCACATACAAAAATAT 57.591 32.000 0.00 0.00 36.64 1.28
329 330 7.259882 ACACATGCTCCACATACAAAAATATG 58.740 34.615 0.00 0.00 36.64 1.78
330 331 6.698329 CACATGCTCCACATACAAAAATATGG 59.302 38.462 0.00 0.00 36.64 2.74
331 332 6.606796 ACATGCTCCACATACAAAAATATGGA 59.393 34.615 0.00 0.00 36.64 3.41
332 333 7.288389 ACATGCTCCACATACAAAAATATGGAT 59.712 33.333 0.00 0.00 36.64 3.41
333 334 7.041635 TGCTCCACATACAAAAATATGGATG 57.958 36.000 0.00 0.00 45.47 3.51
368 369 7.921786 ACGTTATCAGATTCATTTGGAAAGA 57.078 32.000 0.00 0.00 39.39 2.52
369 370 8.335532 ACGTTATCAGATTCATTTGGAAAGAA 57.664 30.769 0.00 0.00 39.39 2.52
370 371 8.792633 ACGTTATCAGATTCATTTGGAAAGAAA 58.207 29.630 0.00 0.00 39.39 2.52
371 372 9.624697 CGTTATCAGATTCATTTGGAAAGAAAA 57.375 29.630 0.00 0.00 39.39 2.29
386 387 2.833957 AAAAACTCCGCCGTCCCT 59.166 55.556 0.00 0.00 0.00 4.20
387 388 2.060370 AAAAACTCCGCCGTCCCTA 58.940 52.632 0.00 0.00 0.00 3.53
388 389 0.397564 AAAAACTCCGCCGTCCCTAA 59.602 50.000 0.00 0.00 0.00 2.69
389 390 0.397564 AAAACTCCGCCGTCCCTAAA 59.602 50.000 0.00 0.00 0.00 1.85
390 391 0.616891 AAACTCCGCCGTCCCTAAAT 59.383 50.000 0.00 0.00 0.00 1.40
391 392 1.488390 AACTCCGCCGTCCCTAAATA 58.512 50.000 0.00 0.00 0.00 1.40
392 393 1.713297 ACTCCGCCGTCCCTAAATAT 58.287 50.000 0.00 0.00 0.00 1.28
393 394 2.880443 ACTCCGCCGTCCCTAAATATA 58.120 47.619 0.00 0.00 0.00 0.86
394 395 3.233507 ACTCCGCCGTCCCTAAATATAA 58.766 45.455 0.00 0.00 0.00 0.98
395 396 3.257624 ACTCCGCCGTCCCTAAATATAAG 59.742 47.826 0.00 0.00 0.00 1.73
396 397 3.499338 TCCGCCGTCCCTAAATATAAGA 58.501 45.455 0.00 0.00 0.00 2.10
397 398 4.091549 TCCGCCGTCCCTAAATATAAGAT 58.908 43.478 0.00 0.00 0.00 2.40
398 399 4.159135 TCCGCCGTCCCTAAATATAAGATC 59.841 45.833 0.00 0.00 0.00 2.75
399 400 4.081862 CCGCCGTCCCTAAATATAAGATCA 60.082 45.833 0.00 0.00 0.00 2.92
400 401 5.395324 CCGCCGTCCCTAAATATAAGATCAT 60.395 44.000 0.00 0.00 0.00 2.45
401 402 6.106673 CGCCGTCCCTAAATATAAGATCATT 58.893 40.000 0.00 0.00 0.00 2.57
402 403 6.594159 CGCCGTCCCTAAATATAAGATCATTT 59.406 38.462 0.00 0.00 0.00 2.32
403 404 7.762615 CGCCGTCCCTAAATATAAGATCATTTA 59.237 37.037 0.00 0.00 0.00 1.40
404 405 9.444600 GCCGTCCCTAAATATAAGATCATTTAA 57.555 33.333 0.00 0.00 0.00 1.52
417 418 7.868906 AAGATCATTTAAATGGCCAAAATGG 57.131 32.000 28.70 16.94 39.79 3.16
418 419 6.961042 AGATCATTTAAATGGCCAAAATGGT 58.039 32.000 28.70 25.52 39.79 3.55
419 420 7.049754 AGATCATTTAAATGGCCAAAATGGTC 58.950 34.615 30.66 30.66 45.06 4.02
420 421 6.371595 TCATTTAAATGGCCAAAATGGTCT 57.628 33.333 28.70 3.71 44.07 3.85
421 422 6.777782 TCATTTAAATGGCCAAAATGGTCTT 58.222 32.000 28.70 9.33 44.07 3.01
422 423 7.911651 TCATTTAAATGGCCAAAATGGTCTTA 58.088 30.769 28.70 14.71 44.07 2.10
423 424 8.547173 TCATTTAAATGGCCAAAATGGTCTTAT 58.453 29.630 28.70 1.84 44.07 1.73
424 425 9.829507 CATTTAAATGGCCAAAATGGTCTTATA 57.170 29.630 24.66 5.61 44.07 0.98
429 430 8.735692 AATGGCCAAAATGGTCTTATATTTTG 57.264 30.769 10.96 12.88 44.07 2.44
434 435 7.985634 CAAAATGGTCTTATATTTTGGGACG 57.014 36.000 12.27 0.00 44.51 4.79
435 436 7.767261 CAAAATGGTCTTATATTTTGGGACGA 58.233 34.615 12.27 0.00 44.51 4.20
436 437 7.948034 AAATGGTCTTATATTTTGGGACGAA 57.052 32.000 0.00 0.00 0.00 3.85
437 438 7.568199 AATGGTCTTATATTTTGGGACGAAG 57.432 36.000 0.00 0.00 0.00 3.79
438 439 5.433526 TGGTCTTATATTTTGGGACGAAGG 58.566 41.667 0.00 0.00 0.00 3.46
439 440 4.820173 GGTCTTATATTTTGGGACGAAGGG 59.180 45.833 0.00 0.00 0.00 3.95
440 441 5.397109 GGTCTTATATTTTGGGACGAAGGGA 60.397 44.000 0.00 0.00 0.00 4.20
441 442 5.758784 GTCTTATATTTTGGGACGAAGGGAG 59.241 44.000 0.00 0.00 0.00 4.30
442 443 5.427481 TCTTATATTTTGGGACGAAGGGAGT 59.573 40.000 0.00 0.00 0.00 3.85
443 444 6.612456 TCTTATATTTTGGGACGAAGGGAGTA 59.388 38.462 0.00 0.00 0.00 2.59
444 445 5.906772 ATATTTTGGGACGAAGGGAGTAT 57.093 39.130 0.00 0.00 0.00 2.12
445 446 3.343941 TTTTGGGACGAAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
446 447 1.946984 TTGGGACGAAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
447 448 2.832643 TGGGACGAAGGGAGTATGTA 57.167 50.000 0.00 0.00 0.00 2.29
448 449 3.323774 TGGGACGAAGGGAGTATGTAT 57.676 47.619 0.00 0.00 0.00 2.29
449 450 3.649843 TGGGACGAAGGGAGTATGTATT 58.350 45.455 0.00 0.00 0.00 1.89
450 451 3.640029 TGGGACGAAGGGAGTATGTATTC 59.360 47.826 0.00 0.00 0.00 1.75
451 452 3.896272 GGGACGAAGGGAGTATGTATTCT 59.104 47.826 0.00 0.00 0.00 2.40
452 453 5.075493 GGGACGAAGGGAGTATGTATTCTA 58.925 45.833 0.00 0.00 0.00 2.10
453 454 5.537674 GGGACGAAGGGAGTATGTATTCTAA 59.462 44.000 0.00 0.00 0.00 2.10
454 455 6.041296 GGGACGAAGGGAGTATGTATTCTAAA 59.959 42.308 0.00 0.00 0.00 1.85
455 456 7.418254 GGGACGAAGGGAGTATGTATTCTAAAA 60.418 40.741 0.00 0.00 0.00 1.52
456 457 8.148999 GGACGAAGGGAGTATGTATTCTAAAAT 58.851 37.037 0.00 0.00 0.00 1.82
457 458 9.543783 GACGAAGGGAGTATGTATTCTAAAATT 57.456 33.333 0.00 0.00 0.00 1.82
487 488 5.628797 AGTAGGTAGTACTCCCTCTGTAC 57.371 47.826 10.79 3.69 37.41 2.90
488 489 5.035556 AGTAGGTAGTACTCCCTCTGTACA 58.964 45.833 10.79 0.00 37.41 2.90
489 490 4.233632 AGGTAGTACTCCCTCTGTACAC 57.766 50.000 0.11 0.00 41.76 2.90
490 491 3.851374 AGGTAGTACTCCCTCTGTACACT 59.149 47.826 0.11 0.00 41.76 3.55
491 492 5.035556 AGGTAGTACTCCCTCTGTACACTA 58.964 45.833 0.11 0.00 41.76 2.74
492 493 5.490357 AGGTAGTACTCCCTCTGTACACTAA 59.510 44.000 0.11 0.00 41.76 2.24
493 494 6.160105 AGGTAGTACTCCCTCTGTACACTAAT 59.840 42.308 0.11 0.00 41.76 1.73
494 495 7.349330 AGGTAGTACTCCCTCTGTACACTAATA 59.651 40.741 0.11 0.00 41.76 0.98
495 496 8.162746 GGTAGTACTCCCTCTGTACACTAATAT 58.837 40.741 0.00 0.00 41.76 1.28
498 499 9.796180 AGTACTCCCTCTGTACACTAATATAAG 57.204 37.037 0.00 0.00 41.76 1.73
499 500 9.790344 GTACTCCCTCTGTACACTAATATAAGA 57.210 37.037 0.00 0.00 39.79 2.10
500 501 8.927675 ACTCCCTCTGTACACTAATATAAGAG 57.072 38.462 0.00 0.00 0.00 2.85
501 502 7.449086 ACTCCCTCTGTACACTAATATAAGAGC 59.551 40.741 0.00 0.00 0.00 4.09
502 503 6.430308 TCCCTCTGTACACTAATATAAGAGCG 59.570 42.308 0.00 0.00 0.00 5.03
503 504 6.207025 CCCTCTGTACACTAATATAAGAGCGT 59.793 42.308 0.00 0.00 0.00 5.07
504 505 7.255520 CCCTCTGTACACTAATATAAGAGCGTT 60.256 40.741 0.00 0.00 0.00 4.84
505 506 8.136165 CCTCTGTACACTAATATAAGAGCGTTT 58.864 37.037 0.00 0.00 0.00 3.60
512 513 9.680315 ACACTAATATAAGAGCGTTTAGATCAC 57.320 33.333 0.00 0.00 37.82 3.06
513 514 9.900710 CACTAATATAAGAGCGTTTAGATCACT 57.099 33.333 0.00 0.00 37.82 3.41
520 521 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
521 522 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
522 523 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
523 524 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
524 525 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
525 526 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
526 527 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
532 533 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
533 534 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
535 536 9.918630 TCACTACTTTAGTATTCTAAACGCTTT 57.081 29.630 0.76 0.00 40.05 3.51
553 554 7.704789 ACGCTTTTATATTAGTTTACGGAGG 57.295 36.000 0.00 0.00 0.00 4.30
554 555 6.703165 ACGCTTTTATATTAGTTTACGGAGGG 59.297 38.462 0.00 0.00 0.00 4.30
561 562 5.604758 ATTAGTTTACGGAGGGAGTAACC 57.395 43.478 0.00 0.00 34.25 2.85
604 608 4.918588 AGTATGGATGAACCGGAGTTTTT 58.081 39.130 9.46 0.00 42.61 1.94
620 624 6.575942 CGGAGTTTTTACTGTTTTTACATCCG 59.424 38.462 0.00 0.00 37.69 4.18
621 625 6.361481 GGAGTTTTTACTGTTTTTACATCCGC 59.639 38.462 0.00 0.00 0.00 5.54
627 631 3.880490 ACTGTTTTTACATCCGCTTGACA 59.120 39.130 0.00 0.00 0.00 3.58
637 641 5.182487 ACATCCGCTTGACACAAATGTATA 58.818 37.500 0.00 0.00 39.95 1.47
640 644 6.176975 TCCGCTTGACACAAATGTATAAAG 57.823 37.500 0.00 0.00 39.95 1.85
729 734 5.420725 AAAGAATTACTGGAAAATGGGGC 57.579 39.130 0.00 0.00 0.00 5.80
753 758 7.305993 GGCAGATATTAAAACGCATTAAACAGC 60.306 37.037 0.00 0.00 0.00 4.40
794 799 1.152756 AAACAGCCACACCCCACTC 60.153 57.895 0.00 0.00 0.00 3.51
795 800 1.645402 AAACAGCCACACCCCACTCT 61.645 55.000 0.00 0.00 0.00 3.24
849 854 1.136500 GCTGCTACTACCACTACCACC 59.864 57.143 0.00 0.00 0.00 4.61
852 857 2.173519 GCTACTACCACTACCACCACA 58.826 52.381 0.00 0.00 0.00 4.17
853 858 2.094338 GCTACTACCACTACCACCACAC 60.094 54.545 0.00 0.00 0.00 3.82
855 860 1.344065 CTACCACTACCACCACACCA 58.656 55.000 0.00 0.00 0.00 4.17
856 861 1.001633 CTACCACTACCACCACACCAC 59.998 57.143 0.00 0.00 0.00 4.16
860 865 1.072505 CTACCACCACACCACCACC 59.927 63.158 0.00 0.00 0.00 4.61
861 866 1.693103 TACCACCACACCACCACCA 60.693 57.895 0.00 0.00 0.00 4.17
897 917 4.767892 CCCTCTGCCCCTCCCCTT 62.768 72.222 0.00 0.00 0.00 3.95
954 974 2.038975 CCCCTTCCTCCGTCCTCA 59.961 66.667 0.00 0.00 0.00 3.86
1390 1410 2.435938 GGGTTGGAGCGCGAATGA 60.436 61.111 12.10 0.00 0.00 2.57
1413 1433 3.689649 GTGGAGGAAGTGATGCGTAAAAT 59.310 43.478 0.00 0.00 0.00 1.82
1414 1434 4.156008 GTGGAGGAAGTGATGCGTAAAATT 59.844 41.667 0.00 0.00 0.00 1.82
1417 1437 5.572896 GGAGGAAGTGATGCGTAAAATTTTG 59.427 40.000 13.76 0.00 0.00 2.44
1420 1440 5.461032 AAGTGATGCGTAAAATTTTGGGA 57.539 34.783 13.76 7.03 0.00 4.37
1512 1532 1.616865 AGCTGTTGCATGCATTTGAGT 59.383 42.857 23.37 1.98 42.74 3.41
1603 1624 1.477105 GTTCTTCCGTTGCTGTTTGC 58.523 50.000 0.00 0.00 43.25 3.68
1647 1676 5.071115 GGCTTGATCTATTAGGTTCAGGAGT 59.929 44.000 0.00 0.00 0.00 3.85
1648 1677 6.408662 GGCTTGATCTATTAGGTTCAGGAGTT 60.409 42.308 0.00 0.00 0.00 3.01
1657 1686 0.609406 GTTCAGGAGTTTGGAGGGGC 60.609 60.000 0.00 0.00 0.00 5.80
1661 1690 0.772124 AGGAGTTTGGAGGGGCAGAA 60.772 55.000 0.00 0.00 0.00 3.02
1665 1694 2.899900 GAGTTTGGAGGGGCAGAAATTT 59.100 45.455 0.00 0.00 0.00 1.82
1674 1703 3.448660 AGGGGCAGAAATTTATTCACTGC 59.551 43.478 16.52 16.52 43.04 4.40
1686 1715 8.807667 AATTTATTCACTGCAGAGTCTTTTTG 57.192 30.769 23.35 5.45 0.00 2.44
1693 1722 5.045872 ACTGCAGAGTCTTTTTGCAATTTC 58.954 37.500 23.35 0.00 46.08 2.17
1702 1731 5.049167 TCTTTTTGCAATTTCGCTGTGAAT 58.951 33.333 0.00 0.00 36.22 2.57
2227 2256 1.451449 TTGGGAAACTAAGGAGGGCA 58.549 50.000 0.00 0.00 0.00 5.36
2245 2274 3.592059 GGCATCACATCTGCAAATTTGT 58.408 40.909 19.03 0.00 41.47 2.83
2313 2342 8.124808 ACTTTCAAGGTTTACCAAGTTTGTAA 57.875 30.769 1.13 0.00 38.89 2.41
2331 2360 8.034804 AGTTTGTAATGCTTTGAGTTGTTTTCT 58.965 29.630 0.00 0.00 0.00 2.52
2367 2396 5.356426 GTTTGAACATACCTGGTTGCTTTT 58.644 37.500 3.84 0.00 0.00 2.27
2374 2403 1.607148 ACCTGGTTGCTTTTAACTCGC 59.393 47.619 0.00 0.00 0.00 5.03
2416 2445 2.040544 CGAAATGCTGGGTCGGCTT 61.041 57.895 0.30 0.00 36.58 4.35
2642 2671 7.482169 TGACCTCAAGACATACAAGAACTAT 57.518 36.000 0.00 0.00 0.00 2.12
2659 2688 3.886123 ACTATAAGGACATGGTTGTGGC 58.114 45.455 0.00 0.00 35.79 5.01
2743 2772 2.030007 TGCTGTTTTAATCTGCACCTGC 60.030 45.455 3.97 0.00 42.50 4.85
2886 2915 4.243270 AGTACACTTTACTAAAGCTGCGG 58.757 43.478 8.26 0.00 42.27 5.69
2888 2917 1.130561 CACTTTACTAAAGCTGCGGCC 59.869 52.381 15.55 0.00 42.27 6.13
2909 2938 4.469657 CCATTAATTTGGATCGGAGGGAA 58.530 43.478 0.00 0.00 39.25 3.97
3010 3040 2.665649 TTCGAGGCTTCGCATCTAAA 57.334 45.000 14.16 0.00 46.28 1.85
3043 3073 7.959689 TGCTATTTGTGTGCATATTTGTTTT 57.040 28.000 0.00 0.00 0.00 2.43
3094 3124 5.617528 TTACCGGTGGAGCAAATATTCTA 57.382 39.130 19.93 0.00 0.00 2.10
3145 3175 9.202273 TGTTTAATATTGTTTGATGAAGCAACC 57.798 29.630 0.00 0.00 35.40 3.77
3320 3350 6.440647 TCAAGGTCAGACATCAAACCTACTAT 59.559 38.462 2.17 0.00 41.25 2.12
3346 3376 4.160736 AGAACGTAAATTGCAGAAAGGC 57.839 40.909 0.00 0.00 0.00 4.35
3450 3481 7.442969 CAGTTTTAACCTTACATGTGGTACTGA 59.557 37.037 20.95 4.63 39.60 3.41
3578 3609 3.893200 CGTCCCATGGGAGTAAGTACATA 59.107 47.826 34.67 4.82 46.16 2.29
3993 5626 5.777223 AGTAAAAAGGAACGGACCTAGTAGT 59.223 40.000 3.22 0.00 39.62 2.73
4268 5901 0.321564 TTGCAGGATGTTCACCGAGG 60.322 55.000 0.00 0.00 39.31 4.63
4306 5939 5.939883 CAGGGTCATGAAAAGTTCAGATGTA 59.060 40.000 0.00 0.00 43.98 2.29
4307 5940 6.093219 CAGGGTCATGAAAAGTTCAGATGTAG 59.907 42.308 0.00 0.00 43.98 2.74
4312 5945 6.430925 TCATGAAAAGTTCAGATGTAGTTGGG 59.569 38.462 0.00 0.00 43.98 4.12
4339 5972 4.939439 GGTATGTCCAATAGTGTTCCGTTT 59.061 41.667 0.00 0.00 35.97 3.60
4344 5977 6.938507 TGTCCAATAGTGTTCCGTTTAGTAT 58.061 36.000 0.00 0.00 0.00 2.12
4472 6114 7.872163 TGCTTAATTATTTGAACTGCACTTG 57.128 32.000 0.00 0.00 0.00 3.16
4486 6128 3.127533 CTTGAGCGGGAAAGCGGG 61.128 66.667 0.00 0.00 43.00 6.13
4551 6196 7.562135 AGTTGGAGCTTAAATATCTTTACGGA 58.438 34.615 0.00 0.00 0.00 4.69
4727 6374 7.174946 AGAGAATCACAATTGTTTCCGTAATGT 59.825 33.333 8.77 0.00 37.82 2.71
4760 6407 4.836125 CAGAATGTTGTGCTGGTAGTTT 57.164 40.909 0.00 0.00 0.00 2.66
4811 6458 5.050431 ACACAGCATTAAATTTGCGTTTTCC 60.050 36.000 0.00 0.00 44.82 3.13
5116 6763 6.142818 TGTTTCTCCAACAATGTAAGGTTG 57.857 37.500 4.98 0.00 42.76 3.77
5127 6775 6.795399 ACAATGTAAGGTTGAAGTTCACTTG 58.205 36.000 15.51 8.88 36.11 3.16
5206 6854 4.096532 TGATGTCCGAACTGACTGTATCTC 59.903 45.833 0.00 0.00 36.21 2.75
5299 6947 0.388520 TGAAGACGAGGTCGCACATG 60.389 55.000 0.00 0.00 44.43 3.21
5300 6948 1.687494 GAAGACGAGGTCGCACATGC 61.687 60.000 0.00 0.00 44.43 4.06
5332 6980 2.311542 ACTGCATGGTTTTCCTATCCCA 59.688 45.455 0.00 0.00 41.38 4.37
5358 7006 5.970592 AGTAAAATCACCCGTTACTCTACC 58.029 41.667 0.00 0.00 33.79 3.18
5374 7022 4.624452 ACTCTACCGTTTAAGATTTGCGAC 59.376 41.667 0.00 0.00 0.00 5.19
5579 7227 7.490000 ACTATTATTTACCTGACGAACTCTGG 58.510 38.462 0.00 0.00 42.52 3.86
5620 7268 8.145767 TCCTAGAAAAGTTTACAGATTTCGACA 58.854 33.333 0.00 0.00 36.99 4.35
5638 7286 5.345702 TCGACACAGATTAGAATTTACCCG 58.654 41.667 0.00 0.00 0.00 5.28
5645 7293 7.011109 CACAGATTAGAATTTACCCGTTCGATT 59.989 37.037 0.00 0.00 0.00 3.34
5673 7321 0.240945 GGGCGACATGGTCTTTTGTG 59.759 55.000 0.00 0.00 0.00 3.33
5706 7354 8.551205 TCAATCTATTCAATACGTTTGATCTGC 58.449 33.333 11.98 0.00 0.00 4.26
5707 7355 8.337532 CAATCTATTCAATACGTTTGATCTGCA 58.662 33.333 11.98 0.00 0.00 4.41
5708 7356 7.468922 TCTATTCAATACGTTTGATCTGCAG 57.531 36.000 7.63 7.63 0.00 4.41
5747 7396 5.145059 GCGGCAGTCTTTTTAAGTAACTTC 58.855 41.667 0.00 0.00 0.00 3.01
5748 7397 5.277634 GCGGCAGTCTTTTTAAGTAACTTCA 60.278 40.000 0.00 0.00 0.00 3.02
5822 7488 6.164876 TCATGGCTTGTTCCAATTTGTTATG 58.835 36.000 0.00 0.00 39.96 1.90
5853 7519 1.300388 CAGTGGGCTGTTGCTTTGC 60.300 57.895 0.00 0.00 37.92 3.68
5913 7582 6.904011 GTGAAACATCTCATCTATTCTTTGCG 59.096 38.462 0.00 0.00 36.32 4.85
6014 7686 5.641789 TGTCCCATAGAGTAGCAGTAGTA 57.358 43.478 0.00 0.00 0.00 1.82
6068 7740 7.998383 ACCATCATTCAGGTAGTATAAAATGCA 59.002 33.333 0.00 0.00 36.07 3.96
6144 7816 1.069358 CCGGCCAGTATCTTCTTCCTC 59.931 57.143 2.24 0.00 0.00 3.71
6147 7819 2.119495 GCCAGTATCTTCTTCCTCCCA 58.881 52.381 0.00 0.00 0.00 4.37
6148 7820 2.158885 GCCAGTATCTTCTTCCTCCCAC 60.159 54.545 0.00 0.00 0.00 4.61
6150 7822 3.379452 CAGTATCTTCTTCCTCCCACCT 58.621 50.000 0.00 0.00 0.00 4.00
6151 7823 4.547671 CAGTATCTTCTTCCTCCCACCTA 58.452 47.826 0.00 0.00 0.00 3.08
6152 7824 4.342665 CAGTATCTTCTTCCTCCCACCTAC 59.657 50.000 0.00 0.00 0.00 3.18
6153 7825 1.848652 TCTTCTTCCTCCCACCTACG 58.151 55.000 0.00 0.00 0.00 3.51
6154 7826 1.076677 TCTTCTTCCTCCCACCTACGT 59.923 52.381 0.00 0.00 0.00 3.57
6155 7827 2.309755 TCTTCTTCCTCCCACCTACGTA 59.690 50.000 0.00 0.00 0.00 3.57
6199 7875 1.251251 CACTTTGGCCTCCTTTCCTG 58.749 55.000 3.32 0.00 0.00 3.86
6221 7897 5.001232 TGTTGTTTCCTATTCCTCCTTTCG 58.999 41.667 0.00 0.00 0.00 3.46
6258 7934 1.031235 TTGGTTGGTGTGCATGTGAG 58.969 50.000 0.00 0.00 0.00 3.51
6259 7935 0.822944 TGGTTGGTGTGCATGTGAGG 60.823 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.268280 CTGGACTGCCTGCTGAGG 59.732 66.667 2.88 0.00 43.19 3.86
10 11 2.725203 TACACAACCGGCTGGACTGC 62.725 60.000 21.41 0.00 39.21 4.40
11 12 0.670546 CTACACAACCGGCTGGACTG 60.671 60.000 21.41 17.16 39.21 3.51
12 13 0.830444 TCTACACAACCGGCTGGACT 60.830 55.000 21.41 1.02 39.21 3.85
13 14 0.669625 GTCTACACAACCGGCTGGAC 60.670 60.000 21.41 3.11 39.21 4.02
14 15 1.669440 GTCTACACAACCGGCTGGA 59.331 57.895 21.41 0.00 39.21 3.86
15 16 1.736645 CGTCTACACAACCGGCTGG 60.737 63.158 11.02 11.02 42.84 4.85
16 17 0.319211 TTCGTCTACACAACCGGCTG 60.319 55.000 0.00 0.62 0.00 4.85
17 18 0.390124 TTTCGTCTACACAACCGGCT 59.610 50.000 0.00 0.00 0.00 5.52
18 19 0.788391 CTTTCGTCTACACAACCGGC 59.212 55.000 0.00 0.00 0.00 6.13
19 20 1.790623 CACTTTCGTCTACACAACCGG 59.209 52.381 0.00 0.00 0.00 5.28
20 21 1.191647 GCACTTTCGTCTACACAACCG 59.808 52.381 0.00 0.00 0.00 4.44
21 22 2.206750 TGCACTTTCGTCTACACAACC 58.793 47.619 0.00 0.00 0.00 3.77
22 23 3.936902 TTGCACTTTCGTCTACACAAC 57.063 42.857 0.00 0.00 0.00 3.32
23 24 4.948608 TTTTGCACTTTCGTCTACACAA 57.051 36.364 0.00 0.00 0.00 3.33
24 25 5.270083 CAATTTTGCACTTTCGTCTACACA 58.730 37.500 0.00 0.00 0.00 3.72
25 26 5.789774 CAATTTTGCACTTTCGTCTACAC 57.210 39.130 0.00 0.00 0.00 2.90
40 41 4.748102 AGTCAAGCTCAATGTGCAATTTTG 59.252 37.500 10.02 5.53 0.00 2.44
41 42 4.748102 CAGTCAAGCTCAATGTGCAATTTT 59.252 37.500 10.02 0.00 0.00 1.82
42 43 4.304110 CAGTCAAGCTCAATGTGCAATTT 58.696 39.130 10.02 0.00 0.00 1.82
43 44 3.859627 GCAGTCAAGCTCAATGTGCAATT 60.860 43.478 10.02 0.00 0.00 2.32
44 45 2.352421 GCAGTCAAGCTCAATGTGCAAT 60.352 45.455 10.02 0.00 0.00 3.56
45 46 1.001048 GCAGTCAAGCTCAATGTGCAA 60.001 47.619 10.02 0.00 0.00 4.08
46 47 0.594602 GCAGTCAAGCTCAATGTGCA 59.405 50.000 10.02 0.00 0.00 4.57
47 48 0.594602 TGCAGTCAAGCTCAATGTGC 59.405 50.000 0.00 0.00 34.99 4.57
48 49 2.351447 CCTTGCAGTCAAGCTCAATGTG 60.351 50.000 0.00 0.00 46.38 3.21
49 50 1.884579 CCTTGCAGTCAAGCTCAATGT 59.115 47.619 0.00 0.00 46.38 2.71
50 51 1.884579 ACCTTGCAGTCAAGCTCAATG 59.115 47.619 0.00 0.00 46.38 2.82
51 52 2.157738 GACCTTGCAGTCAAGCTCAAT 58.842 47.619 1.41 0.00 46.38 2.57
52 53 1.597742 GACCTTGCAGTCAAGCTCAA 58.402 50.000 1.41 0.00 46.38 3.02
53 54 0.601046 CGACCTTGCAGTCAAGCTCA 60.601 55.000 6.87 0.00 46.38 4.26
54 55 1.905922 GCGACCTTGCAGTCAAGCTC 61.906 60.000 6.87 0.00 46.38 4.09
55 56 1.963338 GCGACCTTGCAGTCAAGCT 60.963 57.895 6.87 0.00 46.38 3.74
56 57 1.963338 AGCGACCTTGCAGTCAAGC 60.963 57.895 6.87 3.11 46.38 4.01
58 59 1.597854 CCAGCGACCTTGCAGTCAA 60.598 57.895 6.87 0.00 36.52 3.18
59 60 2.031012 CCAGCGACCTTGCAGTCA 59.969 61.111 6.87 0.00 36.52 3.41
60 61 2.743928 CCCAGCGACCTTGCAGTC 60.744 66.667 0.00 0.00 37.31 3.51
61 62 3.241530 TCCCAGCGACCTTGCAGT 61.242 61.111 0.00 0.00 37.31 4.40
62 63 2.435586 CTCCCAGCGACCTTGCAG 60.436 66.667 0.00 0.00 37.31 4.41
63 64 4.704833 GCTCCCAGCGACCTTGCA 62.705 66.667 0.00 0.00 37.31 4.08
64 65 3.984193 ATGCTCCCAGCGACCTTGC 62.984 63.158 0.00 0.00 46.26 4.01
65 66 2.110967 CATGCTCCCAGCGACCTTG 61.111 63.158 0.00 0.00 46.26 3.61
66 67 2.129555 AACATGCTCCCAGCGACCTT 62.130 55.000 0.00 0.00 46.26 3.50
67 68 2.596851 AACATGCTCCCAGCGACCT 61.597 57.895 0.00 0.00 46.26 3.85
68 69 2.045926 AACATGCTCCCAGCGACC 60.046 61.111 0.00 0.00 46.26 4.79
69 70 0.955428 TTCAACATGCTCCCAGCGAC 60.955 55.000 0.00 0.00 46.26 5.19
70 71 0.035152 ATTCAACATGCTCCCAGCGA 60.035 50.000 0.00 0.00 46.26 4.93
71 72 0.099968 CATTCAACATGCTCCCAGCG 59.900 55.000 0.00 0.00 46.26 5.18
72 73 1.466856 TCATTCAACATGCTCCCAGC 58.533 50.000 0.00 0.00 42.82 4.85
73 74 3.567164 GGTATCATTCAACATGCTCCCAG 59.433 47.826 0.00 0.00 0.00 4.45
74 75 3.554934 GGTATCATTCAACATGCTCCCA 58.445 45.455 0.00 0.00 0.00 4.37
75 76 2.549754 CGGTATCATTCAACATGCTCCC 59.450 50.000 0.00 0.00 0.00 4.30
76 77 2.549754 CCGGTATCATTCAACATGCTCC 59.450 50.000 0.00 0.00 0.00 4.70
77 78 3.466836 TCCGGTATCATTCAACATGCTC 58.533 45.455 0.00 0.00 0.00 4.26
78 79 3.558931 TCCGGTATCATTCAACATGCT 57.441 42.857 0.00 0.00 0.00 3.79
79 80 4.335315 TCTTTCCGGTATCATTCAACATGC 59.665 41.667 0.00 0.00 0.00 4.06
80 81 6.435430 TTCTTTCCGGTATCATTCAACATG 57.565 37.500 0.00 0.00 0.00 3.21
81 82 7.645058 AATTCTTTCCGGTATCATTCAACAT 57.355 32.000 0.00 0.00 0.00 2.71
82 83 7.461182 AAATTCTTTCCGGTATCATTCAACA 57.539 32.000 0.00 0.00 0.00 3.33
86 87 8.968242 GCAAATAAATTCTTTCCGGTATCATTC 58.032 33.333 0.00 0.00 0.00 2.67
87 88 8.695456 AGCAAATAAATTCTTTCCGGTATCATT 58.305 29.630 0.00 0.00 0.00 2.57
88 89 8.137437 CAGCAAATAAATTCTTTCCGGTATCAT 58.863 33.333 0.00 0.00 0.00 2.45
89 90 7.122055 ACAGCAAATAAATTCTTTCCGGTATCA 59.878 33.333 0.00 0.00 0.00 2.15
90 91 7.480810 ACAGCAAATAAATTCTTTCCGGTATC 58.519 34.615 0.00 0.00 0.00 2.24
91 92 7.404671 ACAGCAAATAAATTCTTTCCGGTAT 57.595 32.000 0.00 0.00 0.00 2.73
92 93 6.827586 ACAGCAAATAAATTCTTTCCGGTA 57.172 33.333 0.00 0.00 0.00 4.02
93 94 5.722021 ACAGCAAATAAATTCTTTCCGGT 57.278 34.783 0.00 0.00 0.00 5.28
94 95 6.265577 CCTACAGCAAATAAATTCTTTCCGG 58.734 40.000 0.00 0.00 0.00 5.14
95 96 6.265577 CCCTACAGCAAATAAATTCTTTCCG 58.734 40.000 0.00 0.00 0.00 4.30
96 97 6.042777 GCCCTACAGCAAATAAATTCTTTCC 58.957 40.000 0.00 0.00 0.00 3.13
97 98 6.042777 GGCCCTACAGCAAATAAATTCTTTC 58.957 40.000 0.00 0.00 0.00 2.62
98 99 5.394115 CGGCCCTACAGCAAATAAATTCTTT 60.394 40.000 0.00 0.00 0.00 2.52
99 100 4.097892 CGGCCCTACAGCAAATAAATTCTT 59.902 41.667 0.00 0.00 0.00 2.52
100 101 3.632145 CGGCCCTACAGCAAATAAATTCT 59.368 43.478 0.00 0.00 0.00 2.40
101 102 3.243401 CCGGCCCTACAGCAAATAAATTC 60.243 47.826 0.00 0.00 0.00 2.17
102 103 2.693074 CCGGCCCTACAGCAAATAAATT 59.307 45.455 0.00 0.00 0.00 1.82
103 104 2.306847 CCGGCCCTACAGCAAATAAAT 58.693 47.619 0.00 0.00 0.00 1.40
104 105 1.004979 ACCGGCCCTACAGCAAATAAA 59.995 47.619 0.00 0.00 0.00 1.40
105 106 0.621609 ACCGGCCCTACAGCAAATAA 59.378 50.000 0.00 0.00 0.00 1.40
106 107 0.107410 CACCGGCCCTACAGCAAATA 60.107 55.000 0.00 0.00 0.00 1.40
107 108 1.378514 CACCGGCCCTACAGCAAAT 60.379 57.895 0.00 0.00 0.00 2.32
108 109 1.847798 ATCACCGGCCCTACAGCAAA 61.848 55.000 0.00 0.00 0.00 3.68
109 110 0.978667 TATCACCGGCCCTACAGCAA 60.979 55.000 0.00 0.00 0.00 3.91
110 111 1.382009 TATCACCGGCCCTACAGCA 60.382 57.895 0.00 0.00 0.00 4.41
111 112 1.113517 TCTATCACCGGCCCTACAGC 61.114 60.000 0.00 0.00 0.00 4.40
112 113 1.341531 CTTCTATCACCGGCCCTACAG 59.658 57.143 0.00 0.00 0.00 2.74
113 114 1.063492 TCTTCTATCACCGGCCCTACA 60.063 52.381 0.00 0.00 0.00 2.74
114 115 1.700955 TCTTCTATCACCGGCCCTAC 58.299 55.000 0.00 0.00 0.00 3.18
115 116 2.464796 TTCTTCTATCACCGGCCCTA 57.535 50.000 0.00 0.00 0.00 3.53
116 117 1.580059 TTTCTTCTATCACCGGCCCT 58.420 50.000 0.00 0.00 0.00 5.19
117 118 2.158813 TGATTTCTTCTATCACCGGCCC 60.159 50.000 0.00 0.00 0.00 5.80
118 119 3.194005 TGATTTCTTCTATCACCGGCC 57.806 47.619 0.00 0.00 0.00 6.13
119 120 4.555511 GCATTGATTTCTTCTATCACCGGC 60.556 45.833 0.00 0.00 32.04 6.13
120 121 4.576053 TGCATTGATTTCTTCTATCACCGG 59.424 41.667 0.00 0.00 32.04 5.28
121 122 5.295292 AGTGCATTGATTTCTTCTATCACCG 59.705 40.000 0.00 0.00 32.04 4.94
122 123 6.459298 CCAGTGCATTGATTTCTTCTATCACC 60.459 42.308 11.31 0.00 32.04 4.02
123 124 6.094603 ACCAGTGCATTGATTTCTTCTATCAC 59.905 38.462 11.31 0.00 32.04 3.06
124 125 6.182627 ACCAGTGCATTGATTTCTTCTATCA 58.817 36.000 11.31 0.00 0.00 2.15
125 126 6.690194 ACCAGTGCATTGATTTCTTCTATC 57.310 37.500 11.31 0.00 0.00 2.08
126 127 6.258727 CGTACCAGTGCATTGATTTCTTCTAT 59.741 38.462 11.31 0.00 0.00 1.98
127 128 5.580691 CGTACCAGTGCATTGATTTCTTCTA 59.419 40.000 11.31 0.00 0.00 2.10
128 129 4.393062 CGTACCAGTGCATTGATTTCTTCT 59.607 41.667 11.31 0.00 0.00 2.85
129 130 4.391830 TCGTACCAGTGCATTGATTTCTTC 59.608 41.667 11.31 0.00 0.00 2.87
130 131 4.323417 TCGTACCAGTGCATTGATTTCTT 58.677 39.130 11.31 0.00 0.00 2.52
131 132 3.935203 CTCGTACCAGTGCATTGATTTCT 59.065 43.478 11.31 0.00 0.00 2.52
132 133 3.485877 GCTCGTACCAGTGCATTGATTTC 60.486 47.826 11.31 0.00 0.00 2.17
133 134 2.420022 GCTCGTACCAGTGCATTGATTT 59.580 45.455 11.31 0.00 0.00 2.17
134 135 2.009774 GCTCGTACCAGTGCATTGATT 58.990 47.619 11.31 0.00 0.00 2.57
135 136 1.208052 AGCTCGTACCAGTGCATTGAT 59.792 47.619 11.31 0.00 33.52 2.57
136 137 0.608130 AGCTCGTACCAGTGCATTGA 59.392 50.000 11.31 0.00 33.52 2.57
137 138 1.002366 GAGCTCGTACCAGTGCATTG 58.998 55.000 1.49 1.49 33.52 2.82
138 139 0.458543 CGAGCTCGTACCAGTGCATT 60.459 55.000 27.79 0.00 33.52 3.56
139 140 1.139734 CGAGCTCGTACCAGTGCAT 59.860 57.895 27.79 0.00 33.52 3.96
140 141 2.566529 CGAGCTCGTACCAGTGCA 59.433 61.111 27.79 0.00 33.52 4.57
150 151 2.162608 CCCTATAATCCAGACGAGCTCG 59.837 54.545 33.45 33.45 46.33 5.03
151 152 3.158676 ACCCTATAATCCAGACGAGCTC 58.841 50.000 2.73 2.73 0.00 4.09
152 153 3.246416 ACCCTATAATCCAGACGAGCT 57.754 47.619 0.00 0.00 0.00 4.09
153 154 4.523558 ACTAACCCTATAATCCAGACGAGC 59.476 45.833 0.00 0.00 0.00 5.03
154 155 6.448006 CAACTAACCCTATAATCCAGACGAG 58.552 44.000 0.00 0.00 0.00 4.18
155 156 5.303589 CCAACTAACCCTATAATCCAGACGA 59.696 44.000 0.00 0.00 0.00 4.20
156 157 5.510861 CCCAACTAACCCTATAATCCAGACG 60.511 48.000 0.00 0.00 0.00 4.18
157 158 5.368816 ACCCAACTAACCCTATAATCCAGAC 59.631 44.000 0.00 0.00 0.00 3.51
158 159 5.544682 ACCCAACTAACCCTATAATCCAGA 58.455 41.667 0.00 0.00 0.00 3.86
159 160 5.906772 ACCCAACTAACCCTATAATCCAG 57.093 43.478 0.00 0.00 0.00 3.86
160 161 5.103855 CCAACCCAACTAACCCTATAATCCA 60.104 44.000 0.00 0.00 0.00 3.41
161 162 5.103813 ACCAACCCAACTAACCCTATAATCC 60.104 44.000 0.00 0.00 0.00 3.01
162 163 6.009908 ACCAACCCAACTAACCCTATAATC 57.990 41.667 0.00 0.00 0.00 1.75
163 164 5.397109 CGACCAACCCAACTAACCCTATAAT 60.397 44.000 0.00 0.00 0.00 1.28
164 165 4.080975 CGACCAACCCAACTAACCCTATAA 60.081 45.833 0.00 0.00 0.00 0.98
165 166 3.451902 CGACCAACCCAACTAACCCTATA 59.548 47.826 0.00 0.00 0.00 1.31
166 167 2.237893 CGACCAACCCAACTAACCCTAT 59.762 50.000 0.00 0.00 0.00 2.57
167 168 1.624813 CGACCAACCCAACTAACCCTA 59.375 52.381 0.00 0.00 0.00 3.53
168 169 0.399075 CGACCAACCCAACTAACCCT 59.601 55.000 0.00 0.00 0.00 4.34
169 170 1.239296 GCGACCAACCCAACTAACCC 61.239 60.000 0.00 0.00 0.00 4.11
170 171 0.250597 AGCGACCAACCCAACTAACC 60.251 55.000 0.00 0.00 0.00 2.85
171 172 1.154197 GAGCGACCAACCCAACTAAC 58.846 55.000 0.00 0.00 0.00 2.34
172 173 0.035739 GGAGCGACCAACCCAACTAA 59.964 55.000 0.00 0.00 38.79 2.24
173 174 1.675219 GGAGCGACCAACCCAACTA 59.325 57.895 0.00 0.00 38.79 2.24
174 175 2.430367 GGAGCGACCAACCCAACT 59.570 61.111 0.00 0.00 38.79 3.16
175 176 3.047877 CGGAGCGACCAACCCAAC 61.048 66.667 4.10 0.00 38.90 3.77
212 213 1.522580 CCCTCGCTCCTTTGCTAGC 60.523 63.158 8.10 8.10 35.33 3.42
213 214 0.103937 CTCCCTCGCTCCTTTGCTAG 59.896 60.000 0.00 0.00 0.00 3.42
214 215 0.614979 ACTCCCTCGCTCCTTTGCTA 60.615 55.000 0.00 0.00 0.00 3.49
215 216 1.484444 AACTCCCTCGCTCCTTTGCT 61.484 55.000 0.00 0.00 0.00 3.91
216 217 0.249398 TAACTCCCTCGCTCCTTTGC 59.751 55.000 0.00 0.00 0.00 3.68
217 218 2.762535 TTAACTCCCTCGCTCCTTTG 57.237 50.000 0.00 0.00 0.00 2.77
218 219 5.632034 ATTATTAACTCCCTCGCTCCTTT 57.368 39.130 0.00 0.00 0.00 3.11
219 220 6.742559 TTATTATTAACTCCCTCGCTCCTT 57.257 37.500 0.00 0.00 0.00 3.36
220 221 6.326843 AGTTTATTATTAACTCCCTCGCTCCT 59.673 38.462 0.00 0.00 30.20 3.69
221 222 6.522946 AGTTTATTATTAACTCCCTCGCTCC 58.477 40.000 0.00 0.00 30.20 4.70
222 223 9.141400 CATAGTTTATTATTAACTCCCTCGCTC 57.859 37.037 0.00 0.00 37.12 5.03
223 224 8.648693 ACATAGTTTATTATTAACTCCCTCGCT 58.351 33.333 0.00 0.00 37.12 4.93
224 225 8.828688 ACATAGTTTATTATTAACTCCCTCGC 57.171 34.615 0.00 0.00 37.12 5.03
236 237 9.694137 GGAACGAGAGCTTACATAGTTTATTAT 57.306 33.333 0.00 0.00 0.00 1.28
237 238 8.689061 TGGAACGAGAGCTTACATAGTTTATTA 58.311 33.333 0.00 0.00 0.00 0.98
238 239 7.491696 GTGGAACGAGAGCTTACATAGTTTATT 59.508 37.037 0.00 0.00 0.00 1.40
239 240 6.979238 GTGGAACGAGAGCTTACATAGTTTAT 59.021 38.462 0.00 0.00 0.00 1.40
240 241 6.071784 TGTGGAACGAGAGCTTACATAGTTTA 60.072 38.462 0.00 0.00 42.39 2.01
241 242 5.169295 GTGGAACGAGAGCTTACATAGTTT 58.831 41.667 0.00 0.00 0.00 2.66
242 243 4.219944 TGTGGAACGAGAGCTTACATAGTT 59.780 41.667 0.00 0.00 42.39 2.24
243 244 3.762288 TGTGGAACGAGAGCTTACATAGT 59.238 43.478 0.00 0.00 42.39 2.12
244 245 4.371855 TGTGGAACGAGAGCTTACATAG 57.628 45.455 0.00 0.00 42.39 2.23
245 246 5.127194 AGAATGTGGAACGAGAGCTTACATA 59.873 40.000 0.00 0.00 42.39 2.29
246 247 3.895232 ATGTGGAACGAGAGCTTACAT 57.105 42.857 0.00 0.00 42.39 2.29
247 248 3.258372 AGAATGTGGAACGAGAGCTTACA 59.742 43.478 0.00 0.00 42.39 2.41
248 249 3.851098 AGAATGTGGAACGAGAGCTTAC 58.149 45.455 0.00 0.00 42.39 2.34
249 250 4.440250 GCTAGAATGTGGAACGAGAGCTTA 60.440 45.833 0.00 0.00 42.39 3.09
250 251 3.677424 GCTAGAATGTGGAACGAGAGCTT 60.677 47.826 0.00 0.00 42.39 3.74
251 252 2.159170 GCTAGAATGTGGAACGAGAGCT 60.159 50.000 0.00 0.00 42.39 4.09
252 253 2.197577 GCTAGAATGTGGAACGAGAGC 58.802 52.381 0.00 0.00 42.39 4.09
253 254 3.510388 TGCTAGAATGTGGAACGAGAG 57.490 47.619 0.00 0.00 42.39 3.20
254 255 3.953712 TTGCTAGAATGTGGAACGAGA 57.046 42.857 0.00 0.00 42.39 4.04
255 256 3.997021 ACTTTGCTAGAATGTGGAACGAG 59.003 43.478 0.00 0.00 42.39 4.18
256 257 4.002906 ACTTTGCTAGAATGTGGAACGA 57.997 40.909 0.00 0.00 42.39 3.85
257 258 5.351465 ACATACTTTGCTAGAATGTGGAACG 59.649 40.000 0.00 0.00 42.39 3.95
258 259 6.743575 ACATACTTTGCTAGAATGTGGAAC 57.256 37.500 0.00 0.00 37.35 3.62
259 260 7.335924 GGTAACATACTTTGCTAGAATGTGGAA 59.664 37.037 0.00 0.00 31.44 3.53
260 261 6.821665 GGTAACATACTTTGCTAGAATGTGGA 59.178 38.462 0.00 0.00 31.44 4.02
261 262 6.823689 AGGTAACATACTTTGCTAGAATGTGG 59.176 38.462 0.00 0.00 41.41 4.17
262 263 7.849804 AGGTAACATACTTTGCTAGAATGTG 57.150 36.000 0.00 0.00 41.41 3.21
263 264 9.953565 TTAAGGTAACATACTTTGCTAGAATGT 57.046 29.630 0.00 0.00 41.41 2.71
290 291 9.801873 GTGGAGCATGTGTTTTATATATGTTTT 57.198 29.630 0.00 0.00 0.00 2.43
291 292 8.965819 TGTGGAGCATGTGTTTTATATATGTTT 58.034 29.630 0.00 0.00 0.00 2.83
292 293 8.518430 TGTGGAGCATGTGTTTTATATATGTT 57.482 30.769 0.00 0.00 0.00 2.71
293 294 8.696043 ATGTGGAGCATGTGTTTTATATATGT 57.304 30.769 0.00 0.00 36.26 2.29
295 296 9.791801 TGTATGTGGAGCATGTGTTTTATATAT 57.208 29.630 0.00 0.00 38.47 0.86
296 297 9.620259 TTGTATGTGGAGCATGTGTTTTATATA 57.380 29.630 0.00 0.00 38.47 0.86
297 298 8.518430 TTGTATGTGGAGCATGTGTTTTATAT 57.482 30.769 0.00 0.00 38.47 0.86
298 299 7.929941 TTGTATGTGGAGCATGTGTTTTATA 57.070 32.000 0.00 0.00 38.47 0.98
299 300 6.832520 TTGTATGTGGAGCATGTGTTTTAT 57.167 33.333 0.00 0.00 38.47 1.40
300 301 6.641169 TTTGTATGTGGAGCATGTGTTTTA 57.359 33.333 0.00 0.00 38.47 1.52
301 302 5.528043 TTTGTATGTGGAGCATGTGTTTT 57.472 34.783 0.00 0.00 38.47 2.43
302 303 5.528043 TTTTGTATGTGGAGCATGTGTTT 57.472 34.783 0.00 0.00 38.47 2.83
303 304 5.528043 TTTTTGTATGTGGAGCATGTGTT 57.472 34.783 0.00 0.00 38.47 3.32
304 305 5.726980 ATTTTTGTATGTGGAGCATGTGT 57.273 34.783 0.00 0.00 38.47 3.72
305 306 6.698329 CCATATTTTTGTATGTGGAGCATGTG 59.302 38.462 0.00 0.00 38.63 3.21
306 307 6.606796 TCCATATTTTTGTATGTGGAGCATGT 59.393 34.615 0.00 0.00 39.85 3.21
307 308 7.041635 TCCATATTTTTGTATGTGGAGCATG 57.958 36.000 0.00 0.00 39.85 4.06
308 309 7.288389 ACATCCATATTTTTGTATGTGGAGCAT 59.712 33.333 7.88 0.00 45.33 3.79
309 310 6.606796 ACATCCATATTTTTGTATGTGGAGCA 59.393 34.615 7.88 0.00 45.33 4.26
310 311 7.042797 ACATCCATATTTTTGTATGTGGAGC 57.957 36.000 7.88 0.00 45.33 4.70
342 343 9.443323 TCTTTCCAAATGAATCTGATAACGTAA 57.557 29.630 0.00 0.00 31.67 3.18
343 344 9.443323 TTCTTTCCAAATGAATCTGATAACGTA 57.557 29.630 0.00 0.00 31.67 3.57
344 345 7.921786 TCTTTCCAAATGAATCTGATAACGT 57.078 32.000 0.00 0.00 31.67 3.99
345 346 9.624697 TTTTCTTTCCAAATGAATCTGATAACG 57.375 29.630 0.00 0.00 31.67 3.18
369 370 0.397564 TTAGGGACGGCGGAGTTTTT 59.602 50.000 13.24 0.00 0.00 1.94
370 371 0.397564 TTTAGGGACGGCGGAGTTTT 59.602 50.000 13.24 0.00 0.00 2.43
371 372 0.616891 ATTTAGGGACGGCGGAGTTT 59.383 50.000 13.24 0.00 0.00 2.66
372 373 1.488390 TATTTAGGGACGGCGGAGTT 58.512 50.000 13.24 0.00 0.00 3.01
373 374 1.713297 ATATTTAGGGACGGCGGAGT 58.287 50.000 13.24 0.00 0.00 3.85
374 375 3.508793 TCTTATATTTAGGGACGGCGGAG 59.491 47.826 13.24 0.00 0.00 4.63
375 376 3.499338 TCTTATATTTAGGGACGGCGGA 58.501 45.455 13.24 0.00 0.00 5.54
376 377 3.947910 TCTTATATTTAGGGACGGCGG 57.052 47.619 13.24 0.00 0.00 6.13
377 378 5.068234 TGATCTTATATTTAGGGACGGCG 57.932 43.478 4.80 4.80 0.00 6.46
378 379 7.923414 AAATGATCTTATATTTAGGGACGGC 57.077 36.000 0.00 0.00 0.00 5.68
391 392 9.563748 CCATTTTGGCCATTTAAATGATCTTAT 57.436 29.630 30.31 11.24 40.14 1.73
392 393 8.547173 ACCATTTTGGCCATTTAAATGATCTTA 58.453 29.630 30.31 9.68 42.67 2.10
393 394 7.404481 ACCATTTTGGCCATTTAAATGATCTT 58.596 30.769 30.31 15.74 42.67 2.40
394 395 6.961042 ACCATTTTGGCCATTTAAATGATCT 58.039 32.000 30.31 16.28 42.67 2.75
395 396 7.049754 AGACCATTTTGGCCATTTAAATGATC 58.950 34.615 30.31 25.94 42.67 2.92
396 397 6.961042 AGACCATTTTGGCCATTTAAATGAT 58.039 32.000 30.31 20.86 42.67 2.45
397 398 6.371595 AGACCATTTTGGCCATTTAAATGA 57.628 33.333 30.31 8.38 42.67 2.57
398 399 8.735692 ATAAGACCATTTTGGCCATTTAAATG 57.264 30.769 25.13 25.13 42.67 2.32
403 404 9.176460 CAAAATATAAGACCATTTTGGCCATTT 57.824 29.630 6.09 0.00 43.54 2.32
404 405 8.735692 CAAAATATAAGACCATTTTGGCCATT 57.264 30.769 6.09 0.00 43.54 3.16
410 411 7.767261 TCGTCCCAAAATATAAGACCATTTTG 58.233 34.615 11.12 11.12 45.39 2.44
411 412 7.948034 TCGTCCCAAAATATAAGACCATTTT 57.052 32.000 0.00 0.00 35.30 1.82
412 413 7.068226 CCTTCGTCCCAAAATATAAGACCATTT 59.932 37.037 0.00 0.00 0.00 2.32
413 414 6.546034 CCTTCGTCCCAAAATATAAGACCATT 59.454 38.462 0.00 0.00 0.00 3.16
414 415 6.062095 CCTTCGTCCCAAAATATAAGACCAT 58.938 40.000 0.00 0.00 0.00 3.55
415 416 5.433526 CCTTCGTCCCAAAATATAAGACCA 58.566 41.667 0.00 0.00 0.00 4.02
416 417 4.820173 CCCTTCGTCCCAAAATATAAGACC 59.180 45.833 0.00 0.00 0.00 3.85
417 418 5.677567 TCCCTTCGTCCCAAAATATAAGAC 58.322 41.667 0.00 0.00 0.00 3.01
418 419 5.427481 ACTCCCTTCGTCCCAAAATATAAGA 59.573 40.000 0.00 0.00 0.00 2.10
419 420 5.681639 ACTCCCTTCGTCCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
420 421 5.703730 ACTCCCTTCGTCCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
421 422 6.328148 ACATACTCCCTTCGTCCCAAAATATA 59.672 38.462 0.00 0.00 0.00 0.86
422 423 5.132144 ACATACTCCCTTCGTCCCAAAATAT 59.868 40.000 0.00 0.00 0.00 1.28
423 424 4.472108 ACATACTCCCTTCGTCCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
424 425 3.265995 ACATACTCCCTTCGTCCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
425 426 2.640826 ACATACTCCCTTCGTCCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
426 427 2.262637 ACATACTCCCTTCGTCCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
427 428 1.946984 ACATACTCCCTTCGTCCCAA 58.053 50.000 0.00 0.00 0.00 4.12
428 429 2.832643 TACATACTCCCTTCGTCCCA 57.167 50.000 0.00 0.00 0.00 4.37
429 430 3.896272 AGAATACATACTCCCTTCGTCCC 59.104 47.826 0.00 0.00 0.00 4.46
430 431 6.645790 TTAGAATACATACTCCCTTCGTCC 57.354 41.667 0.00 0.00 0.00 4.79
431 432 9.543783 AATTTTAGAATACATACTCCCTTCGTC 57.456 33.333 0.00 0.00 0.00 4.20
464 465 4.776435 ACAGAGGGAGTACTACCTACTC 57.224 50.000 27.44 14.92 46.12 2.59
465 466 5.035556 TGTACAGAGGGAGTACTACCTACT 58.964 45.833 27.44 20.84 46.12 2.57
466 467 5.104569 AGTGTACAGAGGGAGTACTACCTAC 60.105 48.000 27.44 20.63 46.12 3.18
467 468 5.035556 AGTGTACAGAGGGAGTACTACCTA 58.964 45.833 27.44 8.58 46.12 3.08
469 470 4.233632 AGTGTACAGAGGGAGTACTACC 57.766 50.000 17.30 17.30 41.76 3.18
472 473 9.796180 CTTATATTAGTGTACAGAGGGAGTACT 57.204 37.037 0.00 0.00 41.76 2.73
473 474 9.790344 TCTTATATTAGTGTACAGAGGGAGTAC 57.210 37.037 0.00 0.00 41.63 2.73
475 476 7.449086 GCTCTTATATTAGTGTACAGAGGGAGT 59.551 40.741 0.00 0.00 0.00 3.85
476 477 7.361371 CGCTCTTATATTAGTGTACAGAGGGAG 60.361 44.444 12.02 5.59 40.49 4.30
477 478 6.430308 CGCTCTTATATTAGTGTACAGAGGGA 59.570 42.308 12.02 0.00 40.49 4.20
478 479 6.207025 ACGCTCTTATATTAGTGTACAGAGGG 59.793 42.308 14.45 14.45 42.53 4.30
479 480 7.204496 ACGCTCTTATATTAGTGTACAGAGG 57.796 40.000 0.00 0.00 34.79 3.69
486 487 9.680315 GTGATCTAAACGCTCTTATATTAGTGT 57.320 33.333 0.00 0.00 38.05 3.55
487 488 9.900710 AGTGATCTAAACGCTCTTATATTAGTG 57.099 33.333 0.00 0.00 0.00 2.74
494 495 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
495 496 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
496 497 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
497 498 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
498 499 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
499 500 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
500 501 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
506 507 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
507 508 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
509 510 9.918630 AAAGCGTTTAGAATACTAAAGTAGTGA 57.081 29.630 0.00 0.00 45.42 3.41
527 528 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
528 529 7.225341 CCCTCCGTAAACTAATATAAAAGCGTT 59.775 37.037 0.00 0.00 0.00 4.84
529 530 6.703165 CCCTCCGTAAACTAATATAAAAGCGT 59.297 38.462 0.00 0.00 0.00 5.07
530 531 6.925165 TCCCTCCGTAAACTAATATAAAAGCG 59.075 38.462 0.00 0.00 0.00 4.68
531 532 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
535 536 8.860088 GGTTACTCCCTCCGTAAACTAATATAA 58.140 37.037 0.00 0.00 33.02 0.98
536 537 8.004215 TGGTTACTCCCTCCGTAAACTAATATA 58.996 37.037 0.00 0.00 35.95 0.86
537 538 6.840705 TGGTTACTCCCTCCGTAAACTAATAT 59.159 38.462 0.00 0.00 35.95 1.28
538 539 6.194235 TGGTTACTCCCTCCGTAAACTAATA 58.806 40.000 0.00 0.00 35.95 0.98
539 540 5.025453 TGGTTACTCCCTCCGTAAACTAAT 58.975 41.667 0.00 0.00 35.95 1.73
540 541 4.415596 TGGTTACTCCCTCCGTAAACTAA 58.584 43.478 0.00 0.00 35.95 2.24
541 542 4.046286 TGGTTACTCCCTCCGTAAACTA 57.954 45.455 0.00 0.00 35.95 2.24
542 543 2.893424 TGGTTACTCCCTCCGTAAACT 58.107 47.619 0.00 0.00 35.95 2.66
543 544 3.450096 AGATGGTTACTCCCTCCGTAAAC 59.550 47.826 0.00 0.00 35.61 2.01
544 545 3.449737 CAGATGGTTACTCCCTCCGTAAA 59.550 47.826 0.00 0.00 32.34 2.01
545 546 3.028850 CAGATGGTTACTCCCTCCGTAA 58.971 50.000 0.00 0.00 32.34 3.18
546 547 2.242965 TCAGATGGTTACTCCCTCCGTA 59.757 50.000 0.00 0.00 32.34 4.02
547 548 1.006758 TCAGATGGTTACTCCCTCCGT 59.993 52.381 0.00 0.00 32.34 4.69
548 549 1.776662 TCAGATGGTTACTCCCTCCG 58.223 55.000 0.00 0.00 32.34 4.63
549 550 6.441088 AAATATCAGATGGTTACTCCCTCC 57.559 41.667 0.00 0.00 32.34 4.30
575 576 6.070424 ACTCCGGTTCATCCATACTTAAAAGA 60.070 38.462 0.00 0.00 35.57 2.52
579 580 5.687166 AACTCCGGTTCATCCATACTTAA 57.313 39.130 0.00 0.00 35.57 1.85
581 582 4.569719 AAACTCCGGTTCATCCATACTT 57.430 40.909 0.00 0.00 34.14 2.24
582 583 4.569719 AAAACTCCGGTTCATCCATACT 57.430 40.909 0.00 0.00 34.14 2.12
583 584 5.878669 AGTAAAAACTCCGGTTCATCCATAC 59.121 40.000 0.00 0.00 34.14 2.39
584 585 5.878116 CAGTAAAAACTCCGGTTCATCCATA 59.122 40.000 0.00 0.00 34.14 2.74
604 608 5.049954 GTGTCAAGCGGATGTAAAAACAGTA 60.050 40.000 0.00 0.00 0.00 2.74
620 624 5.283717 CACGCTTTATACATTTGTGTCAAGC 59.716 40.000 13.28 13.28 40.57 4.01
621 625 5.283717 GCACGCTTTATACATTTGTGTCAAG 59.716 40.000 0.00 0.00 0.00 3.02
703 707 7.880713 GCCCCATTTTCCAGTAATTCTTTTAAA 59.119 33.333 0.00 0.00 0.00 1.52
704 708 7.016661 TGCCCCATTTTCCAGTAATTCTTTTAA 59.983 33.333 0.00 0.00 0.00 1.52
705 709 6.498651 TGCCCCATTTTCCAGTAATTCTTTTA 59.501 34.615 0.00 0.00 0.00 1.52
710 714 4.023291 TCTGCCCCATTTTCCAGTAATTC 58.977 43.478 0.00 0.00 0.00 2.17
718 723 5.983118 CGTTTTAATATCTGCCCCATTTTCC 59.017 40.000 0.00 0.00 0.00 3.13
729 734 7.167468 GGGCTGTTTAATGCGTTTTAATATCTG 59.833 37.037 0.00 0.00 0.00 2.90
794 799 4.513442 AGAGACTGTAGACTGTAGCAGAG 58.487 47.826 2.91 0.00 35.18 3.35
795 800 4.561500 AGAGACTGTAGACTGTAGCAGA 57.438 45.455 2.91 0.00 35.18 4.26
849 854 2.118404 GTGGTGTGGTGGTGGTGTG 61.118 63.158 0.00 0.00 0.00 3.82
852 857 1.858739 AAGTGTGGTGTGGTGGTGGT 61.859 55.000 0.00 0.00 0.00 4.16
853 858 1.077068 AAGTGTGGTGTGGTGGTGG 60.077 57.895 0.00 0.00 0.00 4.61
855 860 1.752694 GCAAGTGTGGTGTGGTGGT 60.753 57.895 0.00 0.00 0.00 4.16
856 861 1.447317 GAGCAAGTGTGGTGTGGTGG 61.447 60.000 0.00 0.00 35.00 4.61
860 865 0.530650 AGACGAGCAAGTGTGGTGTG 60.531 55.000 0.00 0.00 35.00 3.82
861 866 0.249489 GAGACGAGCAAGTGTGGTGT 60.249 55.000 0.00 0.00 35.00 4.16
897 917 4.141482 GGTGGTTTGATTGCTATAGGAGGA 60.141 45.833 1.04 0.00 0.00 3.71
941 961 1.305046 GAGGGTGAGGACGGAGGAA 60.305 63.158 0.00 0.00 0.00 3.36
954 974 2.958739 TAGCAGGAGGGGGAGGGT 60.959 66.667 0.00 0.00 0.00 4.34
1170 1190 2.962569 GAAAACCCTCGCTTGGCC 59.037 61.111 0.00 0.00 0.00 5.36
1239 1259 3.447025 CTTCTCATCCCCGGACGCC 62.447 68.421 0.73 0.00 0.00 5.68
1370 1390 3.254024 ATTCGCGCTCCAACCCACT 62.254 57.895 5.56 0.00 0.00 4.00
1390 1410 1.557099 TACGCATCACTTCCTCCACT 58.443 50.000 0.00 0.00 0.00 4.00
1413 1433 4.660771 ACCCACCACATATTTTTCCCAAAA 59.339 37.500 0.00 0.00 36.30 2.44
1414 1434 4.235372 ACCCACCACATATTTTTCCCAAA 58.765 39.130 0.00 0.00 0.00 3.28
1417 1437 5.020795 ACTAACCCACCACATATTTTTCCC 58.979 41.667 0.00 0.00 0.00 3.97
1420 1440 6.474630 TCGTACTAACCCACCACATATTTTT 58.525 36.000 0.00 0.00 0.00 1.94
1495 1515 3.729862 TTCACTCAAATGCATGCAACA 57.270 38.095 26.68 7.75 0.00 3.33
1512 1532 0.530744 CCCTCGACAGACGGAATTCA 59.469 55.000 7.93 0.00 42.82 2.57
1610 1631 2.010817 CAAGCCGAGTGCAAAACGC 61.011 57.895 0.00 0.00 44.83 4.84
1611 1632 0.238289 ATCAAGCCGAGTGCAAAACG 59.762 50.000 0.00 0.00 44.83 3.60
1612 1633 1.537202 AGATCAAGCCGAGTGCAAAAC 59.463 47.619 0.00 0.00 44.83 2.43
1613 1634 1.896220 AGATCAAGCCGAGTGCAAAA 58.104 45.000 0.00 0.00 44.83 2.44
1614 1635 2.760634 TAGATCAAGCCGAGTGCAAA 57.239 45.000 0.00 0.00 44.83 3.68
1615 1636 2.988010 ATAGATCAAGCCGAGTGCAA 57.012 45.000 0.00 0.00 44.83 4.08
1616 1637 2.988010 AATAGATCAAGCCGAGTGCA 57.012 45.000 0.00 0.00 44.83 4.57
1647 1676 5.046663 GTGAATAAATTTCTGCCCCTCCAAA 60.047 40.000 0.00 0.00 0.00 3.28
1648 1677 4.466015 GTGAATAAATTTCTGCCCCTCCAA 59.534 41.667 0.00 0.00 0.00 3.53
1657 1686 7.375106 AGACTCTGCAGTGAATAAATTTCTG 57.625 36.000 21.96 0.00 30.63 3.02
1661 1690 7.383300 GCAAAAAGACTCTGCAGTGAATAAATT 59.617 33.333 21.96 7.10 36.09 1.82
1665 1694 4.821260 TGCAAAAAGACTCTGCAGTGAATA 59.179 37.500 21.96 0.00 41.01 1.75
1674 1703 4.147653 CAGCGAAATTGCAAAAAGACTCTG 59.852 41.667 1.71 1.88 37.31 3.35
2245 2274 3.030291 AGTCCAATTCAAACCAAGTGCA 58.970 40.909 0.00 0.00 0.00 4.57
2250 2279 7.595819 AATTGACTAGTCCAATTCAAACCAA 57.404 32.000 20.11 4.22 39.28 3.67
2313 2342 5.140454 ACCCTAGAAAACAACTCAAAGCAT 58.860 37.500 0.00 0.00 0.00 3.79
2357 2386 1.301423 ACGCGAGTTAAAAGCAACCA 58.699 45.000 15.93 0.00 46.40 3.67
2374 2403 7.042992 TCGTTTGGCTATATGAAGTTATGAACG 60.043 37.037 0.00 0.00 36.10 3.95
2416 2445 2.565391 TCAGAGTAAGAACCGGCAATGA 59.435 45.455 0.00 0.00 0.00 2.57
2642 2671 0.958382 GCGCCACAACCATGTCCTTA 60.958 55.000 0.00 0.00 37.82 2.69
2659 2688 3.734902 GCCAATGAACATTTTCCCTAGCG 60.735 47.826 0.00 0.00 0.00 4.26
2743 2772 6.536224 GCATTTCTTCTACCCCAATTCAAATG 59.464 38.462 0.00 0.00 33.68 2.32
2785 2814 5.759506 TTGGTTATTTCTTCAGCGAAACA 57.240 34.783 0.00 0.00 35.88 2.83
2886 2915 2.558359 CCCTCCGATCCAAATTAATGGC 59.442 50.000 0.00 0.00 40.46 4.40
2888 2917 6.127897 GCTATTCCCTCCGATCCAAATTAATG 60.128 42.308 0.00 0.00 0.00 1.90
2909 2938 9.603921 CAATTTCATAAACCTGGAATTTGCTAT 57.396 29.630 0.00 0.00 33.02 2.97
3010 3040 3.864243 CACACAAATAGCATGGCCAAAT 58.136 40.909 10.96 0.20 0.00 2.32
3043 3073 7.782897 ATATGCTGAAACTAGGTATCTAGCA 57.217 36.000 10.09 4.12 45.20 3.49
3145 3175 5.016051 ACATAGTCCAATCTACACTGCTG 57.984 43.478 0.00 0.00 0.00 4.41
3320 3350 7.168469 GCCTTTCTGCAATTTACGTTCTTAAAA 59.832 33.333 0.00 0.00 0.00 1.52
3578 3609 9.739276 TTGTTGTTATTCCAATTAGATCAGACT 57.261 29.630 0.00 0.00 0.00 3.24
3724 3951 3.941483 CGAGTTCATTTTATCTGGGTGCT 59.059 43.478 0.00 0.00 0.00 4.40
3803 4036 7.069085 AGGTTGACTGCATGCATTCTATAAAAT 59.931 33.333 30.70 13.12 0.00 1.82
3920 4154 6.480763 TCCAATAAATTGCTTAGACCACTGA 58.519 36.000 0.00 0.00 36.48 3.41
3993 5626 6.952358 AGATAACCAAAGTGACTAGTACTGGA 59.048 38.462 13.86 0.00 0.00 3.86
4268 5901 2.203126 CCTGATCCTCCGGCAAGC 60.203 66.667 0.00 0.00 0.00 4.01
4306 5939 1.072266 TGGACATACCAAGCCCAACT 58.928 50.000 0.00 0.00 46.75 3.16
4307 5940 3.662290 TGGACATACCAAGCCCAAC 57.338 52.632 0.00 0.00 46.75 3.77
4409 6051 3.243602 TGAGCAGTAAAGCAGTAACACGA 60.244 43.478 0.00 0.00 36.85 4.35
4472 6114 2.104859 GTAACCCGCTTTCCCGCTC 61.105 63.158 0.00 0.00 0.00 5.03
4486 6128 9.262358 AGTACAATGAGTCTTTTCAAGAGTAAC 57.738 33.333 0.00 0.00 41.17 2.50
4551 6196 6.010219 ACTAACACTCAATTTAATGCTGGGT 58.990 36.000 0.00 0.00 0.00 4.51
4637 6283 5.067805 CCAAAACTCACAAGGCTTCTTACTT 59.932 40.000 0.00 0.00 0.00 2.24
4727 6374 5.978919 GCACAACATTCTGTTCTTCAAATGA 59.021 36.000 0.00 0.00 38.77 2.57
4811 6458 4.701651 TCCAATTGTTTATGGTCAGAGCTG 59.298 41.667 4.43 0.00 37.94 4.24
5116 6763 3.146847 CAGGTTACCCCAAGTGAACTTC 58.853 50.000 0.00 0.00 27.18 3.01
5127 6775 1.076995 GGATGGTGCAGGTTACCCC 60.077 63.158 0.00 0.00 37.40 4.95
5206 6854 5.241728 CCCTTGTAACTCCTGGAAAAAGAAG 59.758 44.000 0.00 0.36 0.00 2.85
5299 6947 1.560923 CATGCAGTAGTACAGACGGC 58.439 55.000 13.60 13.60 38.33 5.68
5300 6948 1.476891 ACCATGCAGTAGTACAGACGG 59.523 52.381 2.52 0.00 0.00 4.79
5332 6980 5.861727 AGAGTAACGGGTGATTTTACTTGT 58.138 37.500 0.00 0.00 36.42 3.16
5358 7006 4.330074 AGGAGATGTCGCAAATCTTAAACG 59.670 41.667 0.00 0.00 34.50 3.60
5374 7022 9.851686 ATATAGAGCATAAGTCTCTAGGAGATG 57.148 37.037 0.47 0.00 43.83 2.90
5579 7227 4.717313 GGAGGGGGTGTGCCGAAC 62.717 72.222 0.00 0.00 34.97 3.95
5620 7268 5.969423 TCGAACGGGTAAATTCTAATCTGT 58.031 37.500 0.00 0.00 0.00 3.41
5651 7299 1.613437 CAAAAGACCATGTCGCCCTTT 59.387 47.619 0.00 0.00 37.67 3.11
5708 7356 2.803479 GCCATGTTAGCCTGCAGC 59.197 61.111 8.66 3.91 44.25 5.25
5822 7488 1.503542 CCACTGATCCGCAAACAGC 59.496 57.895 0.00 0.00 40.87 4.40
5853 7519 7.500227 TGCCTATGTTTCAGAAGAAATGGATAG 59.500 37.037 0.00 0.00 44.87 2.08
6007 7679 5.578005 TTTAGGCTACAGCACTACTACTG 57.422 43.478 3.24 0.00 44.36 2.74
6068 7740 1.847737 TCATTAACCCCCATAGCCGTT 59.152 47.619 0.00 0.00 0.00 4.44
6144 7816 7.220030 TCTACTTTCTACTATACGTAGGTGGG 58.780 42.308 12.37 6.94 44.66 4.61
6147 7819 8.821894 CGTTTCTACTTTCTACTATACGTAGGT 58.178 37.037 0.08 5.37 44.66 3.08
6148 7820 9.035607 TCGTTTCTACTTTCTACTATACGTAGG 57.964 37.037 0.08 0.00 44.66 3.18
6151 7823 7.854916 GCATCGTTTCTACTTTCTACTATACGT 59.145 37.037 0.00 0.00 0.00 3.57
6152 7824 8.068977 AGCATCGTTTCTACTTTCTACTATACG 58.931 37.037 0.00 0.00 0.00 3.06
6153 7825 9.384682 GAGCATCGTTTCTACTTTCTACTATAC 57.615 37.037 0.00 0.00 0.00 1.47
6154 7826 8.566260 GGAGCATCGTTTCTACTTTCTACTATA 58.434 37.037 0.00 0.00 34.37 1.31
6155 7827 7.068348 TGGAGCATCGTTTCTACTTTCTACTAT 59.932 37.037 0.00 0.00 34.37 2.12
6199 7875 4.142665 GCGAAAGGAGGAATAGGAAACAAC 60.143 45.833 0.00 0.00 0.00 3.32
6221 7897 1.103398 AACCAGCGGATATGCAAGGC 61.103 55.000 0.00 0.00 36.21 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.