Multiple sequence alignment - TraesCS3B01G180500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G180500 chr3B 100.000 3937 0 0 1 3937 188248906 188244970 0.000000e+00 7271.0
1 TraesCS3B01G180500 chr3B 100.000 1087 0 0 4425 5511 188244482 188243396 0.000000e+00 2008.0
2 TraesCS3B01G180500 chr3B 100.000 28 0 0 729 756 571813146 571813119 1.000000e-02 52.8
3 TraesCS3B01G180500 chr3A 95.403 2219 68 11 1574 3775 144546219 144544018 0.000000e+00 3502.0
4 TraesCS3B01G180500 chr3A 95.696 883 23 8 720 1589 144547137 144546257 0.000000e+00 1406.0
5 TraesCS3B01G180500 chr3A 92.708 672 29 7 4425 5083 144543759 144543095 0.000000e+00 952.0
6 TraesCS3B01G180500 chr3A 86.372 565 66 7 2 563 144550159 144549603 1.700000e-169 606.0
7 TraesCS3B01G180500 chr3A 96.178 157 6 0 3781 3937 144543955 144543799 1.970000e-64 257.0
8 TraesCS3B01G180500 chr3A 91.860 86 4 1 5078 5160 144543065 144542980 3.490000e-22 117.0
9 TraesCS3B01G180500 chr3A 96.429 56 1 1 5445 5500 89361273 89361327 2.110000e-14 91.6
10 TraesCS3B01G180500 chr3D 95.346 1719 64 8 2069 3773 131806024 131804308 0.000000e+00 2717.0
11 TraesCS3B01G180500 chr3D 97.515 1368 27 6 770 2133 131807389 131806025 0.000000e+00 2331.0
12 TraesCS3B01G180500 chr3D 85.587 895 50 26 4425 5257 131804038 131803161 0.000000e+00 865.0
13 TraesCS3B01G180500 chr3D 98.462 130 2 0 3808 3937 131804207 131804078 4.290000e-56 230.0
14 TraesCS3B01G180500 chr3D 77.119 118 15 9 642 756 427443774 427443666 2.140000e-04 58.4
15 TraesCS3B01G180500 chr3D 100.000 28 0 0 729 756 436045980 436045953 1.000000e-02 52.8
16 TraesCS3B01G180500 chr3D 100.000 28 0 0 729 756 436165196 436165169 1.000000e-02 52.8
17 TraesCS3B01G180500 chr5B 89.412 85 6 2 5368 5452 237110446 237110527 2.720000e-18 104.0
18 TraesCS3B01G180500 chr5B 100.000 28 0 0 729 756 312276601 312276628 1.000000e-02 52.8
19 TraesCS3B01G180500 chr1B 98.214 56 0 1 5445 5500 684140893 684140947 4.540000e-16 97.1
20 TraesCS3B01G180500 chr7D 91.045 67 6 0 5445 5511 70128035 70127969 2.110000e-14 91.6
21 TraesCS3B01G180500 chr7D 98.039 51 1 0 5402 5452 70128242 70128192 7.600000e-14 89.8
22 TraesCS3B01G180500 chr5D 96.429 56 1 1 5445 5500 198459370 198459424 2.110000e-14 91.6
23 TraesCS3B01G180500 chr7B 94.643 56 3 0 5445 5500 83107464 83107409 2.730000e-13 87.9
24 TraesCS3B01G180500 chr7B 89.655 58 5 1 5395 5452 561607090 561607034 7.660000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G180500 chr3B 188243396 188248906 5510 True 4639.50 7271 100.000000 1 5511 2 chr3B.!!$R2 5510
1 TraesCS3B01G180500 chr3A 144542980 144550159 7179 True 1140.00 3502 93.036167 2 5160 6 chr3A.!!$R1 5158
2 TraesCS3B01G180500 chr3D 131803161 131807389 4228 True 1535.75 2717 94.227500 770 5257 4 chr3D.!!$R4 4487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 376 0.178975 AACCGGTTGAAAGGCCATGA 60.179 50.000 21.56 0.00 0.00 3.07 F
436 439 0.312102 GGAAAGGCCGCAATATCAGC 59.688 55.000 0.00 0.00 0.00 4.26 F
475 478 0.678048 GCAGTGGATTGGTCAGGGTC 60.678 60.000 0.00 0.00 0.00 4.46 F
476 479 0.692476 CAGTGGATTGGTCAGGGTCA 59.308 55.000 0.00 0.00 0.00 4.02 F
1742 4129 1.078637 GGGGCTGGAGTCGTTTACC 60.079 63.158 0.00 0.00 0.00 2.85 F
2548 5000 1.404035 GCCTGCCCCAAGTTTATTACG 59.596 52.381 0.00 0.00 0.00 3.18 F
3062 5515 0.460987 AGCTGCTAGCATGTCGGTTC 60.461 55.000 19.72 0.59 45.56 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 4069 1.550072 TGTGCGATCATGGACTTCTCA 59.450 47.619 0.00 0.00 0.00 3.27 R
2435 4887 2.884639 TGTACTTTTCTTTCAGCTGGGC 59.115 45.455 15.13 0.00 0.00 5.36 R
2548 5000 3.165606 CAGAACTGGAGGTGATGGC 57.834 57.895 0.00 0.00 0.00 4.40 R
2633 5085 7.203218 AGAATTTGCCTGTAGAAACTGAAAAC 58.797 34.615 0.00 0.00 0.00 2.43 R
3041 5494 0.460987 ACCGACATGCTAGCAGCTTC 60.461 55.000 23.89 16.61 42.97 3.86 R
3726 6199 2.928757 GAGACTACAGCAGCTCAATGTG 59.071 50.000 0.00 0.00 31.53 3.21 R
5051 7617 0.108138 CCTTCCCCACGACAGATGTC 60.108 60.000 2.78 2.78 41.47 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.348815 TGATAATCCATCTCCAATTGACACTT 58.651 34.615 7.12 0.00 34.46 3.16
36 37 6.310941 TCTCCAATTGACACTTGGGAAATTA 58.689 36.000 20.87 3.64 42.83 1.40
39 40 7.235079 TCCAATTGACACTTGGGAAATTACTA 58.765 34.615 20.87 0.00 42.83 1.82
122 123 5.916661 TCTAAGTGAAGTGGATAGTGGTC 57.083 43.478 0.00 0.00 0.00 4.02
130 131 4.920640 AGTGGATAGTGGTCAAGTATCG 57.079 45.455 0.00 0.00 40.74 2.92
142 144 4.752101 GGTCAAGTATCGAATCTTCCATGG 59.248 45.833 4.97 4.97 0.00 3.66
145 147 4.422073 AGTATCGAATCTTCCATGGCAA 57.578 40.909 6.96 1.51 0.00 4.52
151 153 5.170021 TCGAATCTTCCATGGCAATTTTTG 58.830 37.500 6.96 1.40 0.00 2.44
153 155 5.490159 GAATCTTCCATGGCAATTTTTGGA 58.510 37.500 6.96 2.67 36.49 3.53
154 156 4.540359 TCTTCCATGGCAATTTTTGGAG 57.460 40.909 6.96 3.03 39.33 3.86
155 157 2.766345 TCCATGGCAATTTTTGGAGC 57.234 45.000 6.96 0.00 33.40 4.70
156 158 1.067000 TCCATGGCAATTTTTGGAGCG 60.067 47.619 6.96 0.00 33.40 5.03
157 159 0.722848 CATGGCAATTTTTGGAGCGC 59.277 50.000 0.00 0.00 0.00 5.92
158 160 0.321021 ATGGCAATTTTTGGAGCGCA 59.679 45.000 11.47 0.00 0.00 6.09
159 161 0.319727 TGGCAATTTTTGGAGCGCAG 60.320 50.000 11.47 0.00 0.00 5.18
191 194 9.690913 ATCATCATTTGACTAGAAGAAAATCCA 57.309 29.630 0.00 0.00 37.11 3.41
192 195 8.950210 TCATCATTTGACTAGAAGAAAATCCAC 58.050 33.333 0.00 0.00 0.00 4.02
194 197 6.659242 TCATTTGACTAGAAGAAAATCCACCC 59.341 38.462 0.00 0.00 0.00 4.61
220 223 9.787532 CATGTTTGTTTATTTCCTCGATAATGT 57.212 29.630 0.00 0.00 0.00 2.71
260 263 4.018506 TCAAATCATGAAGTAGGCAGGGAA 60.019 41.667 0.00 0.00 34.30 3.97
263 266 2.642311 TCATGAAGTAGGCAGGGAAACA 59.358 45.455 0.00 0.00 0.00 2.83
266 269 3.686016 TGAAGTAGGCAGGGAAACAATC 58.314 45.455 0.00 0.00 0.00 2.67
276 279 0.727398 GGAAACAATCGAGAAGGGCG 59.273 55.000 0.00 0.00 0.00 6.13
277 280 0.727398 GAAACAATCGAGAAGGGCGG 59.273 55.000 0.00 0.00 0.00 6.13
292 295 0.541764 GGCGGAGAGGAGGATGAGAT 60.542 60.000 0.00 0.00 0.00 2.75
298 301 2.627699 GAGAGGAGGATGAGATGACCAC 59.372 54.545 0.00 0.00 0.00 4.16
316 319 1.931172 CACCGCGTGATAGTAAAAGGG 59.069 52.381 4.92 0.00 35.23 3.95
326 329 4.227300 TGATAGTAAAAGGGCACACCATCT 59.773 41.667 0.00 0.00 43.89 2.90
327 330 3.073274 AGTAAAAGGGCACACCATCTC 57.927 47.619 0.00 0.00 43.89 2.75
328 331 2.375174 AGTAAAAGGGCACACCATCTCA 59.625 45.455 0.00 0.00 43.89 3.27
334 337 1.099879 GGCACACCATCTCATGAGGC 61.100 60.000 22.42 14.93 35.26 4.70
336 339 1.951895 GCACACCATCTCATGAGGCAA 60.952 52.381 22.42 3.84 0.00 4.52
342 345 2.289820 CCATCTCATGAGGCAAATGTCG 59.710 50.000 22.42 3.93 0.00 4.35
346 349 2.093890 TCATGAGGCAAATGTCGCAAT 58.906 42.857 0.00 0.00 32.31 3.56
347 350 2.492881 TCATGAGGCAAATGTCGCAATT 59.507 40.909 0.00 0.00 32.31 2.32
350 353 2.253603 GAGGCAAATGTCGCAATTGTC 58.746 47.619 7.40 4.69 30.04 3.18
351 354 1.612950 AGGCAAATGTCGCAATTGTCA 59.387 42.857 7.40 5.08 32.07 3.58
355 358 4.624882 GGCAAATGTCGCAATTGTCAATAA 59.375 37.500 7.40 0.00 30.32 1.40
357 360 5.444481 GCAAATGTCGCAATTGTCAATAACC 60.444 40.000 7.40 0.00 0.00 2.85
373 376 0.178975 AACCGGTTGAAAGGCCATGA 60.179 50.000 21.56 0.00 0.00 3.07
380 383 2.827921 GTTGAAAGGCCATGACAGGAAT 59.172 45.455 5.01 0.00 0.00 3.01
389 392 3.581755 CCATGACAGGAATTTTGTGCAG 58.418 45.455 0.00 0.00 0.00 4.41
408 411 2.024846 CAGGGAGAGAGGGAGACTAACA 60.025 54.545 0.00 0.00 0.00 2.41
426 429 1.027357 CATGATTCTGGGAAAGGCCG 58.973 55.000 0.00 0.00 37.63 6.13
433 436 0.954452 CTGGGAAAGGCCGCAATATC 59.046 55.000 0.00 0.00 37.63 1.63
436 439 0.312102 GGAAAGGCCGCAATATCAGC 59.688 55.000 0.00 0.00 0.00 4.26
448 451 2.928757 CAATATCAGCGCCTAGATCAGC 59.071 50.000 2.29 0.00 0.00 4.26
456 459 1.604947 CGCCTAGATCAGCTGACATGG 60.605 57.143 20.97 18.72 0.00 3.66
457 460 1.877258 GCCTAGATCAGCTGACATGGC 60.877 57.143 25.51 25.51 0.00 4.40
469 472 1.098050 GACATGGCAGTGGATTGGTC 58.902 55.000 0.00 0.00 0.00 4.02
474 477 1.380302 GCAGTGGATTGGTCAGGGT 59.620 57.895 0.00 0.00 0.00 4.34
475 478 0.678048 GCAGTGGATTGGTCAGGGTC 60.678 60.000 0.00 0.00 0.00 4.46
476 479 0.692476 CAGTGGATTGGTCAGGGTCA 59.308 55.000 0.00 0.00 0.00 4.02
495 498 3.565482 GTCAATGTTGAGCAGGACAAAGA 59.435 43.478 0.00 0.00 37.98 2.52
496 499 4.217118 GTCAATGTTGAGCAGGACAAAGAT 59.783 41.667 0.00 0.00 37.98 2.40
498 501 5.645067 TCAATGTTGAGCAGGACAAAGATAG 59.355 40.000 0.00 0.00 32.50 2.08
532 535 4.813750 AAATTGATCAAGAGGCCCTTTG 57.186 40.909 14.54 4.58 31.42 2.77
533 536 1.549203 TTGATCAAGAGGCCCTTTGC 58.451 50.000 3.38 1.04 40.16 3.68
560 563 4.750098 GGTGTAATCATCAAGGATGGTACG 59.250 45.833 6.39 0.00 40.15 3.67
563 566 6.641314 GTGTAATCATCAAGGATGGTACGTAG 59.359 42.308 0.00 0.00 40.15 3.51
564 567 6.548251 TGTAATCATCAAGGATGGTACGTAGA 59.452 38.462 0.00 0.00 40.15 2.59
565 568 6.672266 AATCATCAAGGATGGTACGTAGAT 57.328 37.500 0.00 0.00 40.15 1.98
566 569 7.776618 AATCATCAAGGATGGTACGTAGATA 57.223 36.000 0.00 0.00 40.15 1.98
568 571 7.776618 TCATCAAGGATGGTACGTAGATATT 57.223 36.000 0.00 0.00 40.15 1.28
569 572 8.190326 TCATCAAGGATGGTACGTAGATATTT 57.810 34.615 0.00 0.00 40.15 1.40
570 573 8.647796 TCATCAAGGATGGTACGTAGATATTTT 58.352 33.333 0.00 0.00 40.15 1.82
571 574 8.926710 CATCAAGGATGGTACGTAGATATTTTC 58.073 37.037 0.00 0.00 36.51 2.29
576 2304 4.847633 TGGTACGTAGATATTTTCCGACG 58.152 43.478 0.00 0.00 39.12 5.12
587 2315 6.700520 AGATATTTTCCGACGTTAGGATCAAC 59.299 38.462 13.38 5.43 37.65 3.18
593 2321 5.404946 TCCGACGTTAGGATCAACTTTAAG 58.595 41.667 9.30 0.00 31.86 1.85
613 2341 5.880054 AAGAATGATTAAAGTGTCACCGG 57.120 39.130 0.00 0.00 0.00 5.28
614 2342 4.906618 AGAATGATTAAAGTGTCACCGGT 58.093 39.130 0.00 0.00 0.00 5.28
615 2343 5.313712 AGAATGATTAAAGTGTCACCGGTT 58.686 37.500 2.97 0.00 0.00 4.44
616 2344 5.768164 AGAATGATTAAAGTGTCACCGGTTT 59.232 36.000 2.97 0.00 0.00 3.27
617 2345 6.938030 AGAATGATTAAAGTGTCACCGGTTTA 59.062 34.615 2.97 0.00 0.00 2.01
618 2346 7.610305 AGAATGATTAAAGTGTCACCGGTTTAT 59.390 33.333 2.97 0.00 0.00 1.40
619 2347 8.795842 AATGATTAAAGTGTCACCGGTTTATA 57.204 30.769 2.97 0.00 0.00 0.98
630 2358 9.925268 GTGTCACCGGTTTATATAATGTAAAAG 57.075 33.333 2.97 0.00 0.00 2.27
634 2362 8.780249 CACCGGTTTATATAATGTAAAAGAGGG 58.220 37.037 2.97 0.00 0.00 4.30
638 2366 9.569122 GGTTTATATAATGTAAAAGAGGGCAGA 57.431 33.333 0.00 0.00 0.00 4.26
651 2379 3.086733 GGCAGAGTAGTTGATGGCC 57.913 57.895 0.00 0.00 32.48 5.36
661 2389 6.042781 AGAGTAGTTGATGGCCCGATATTTTA 59.957 38.462 0.00 0.00 0.00 1.52
674 2402 8.192110 GGCCCGATATTTTATCACTTTTACAAA 58.808 33.333 0.00 0.00 0.00 2.83
689 2417 6.837048 ACTTTTACAAAGGGTATTTGAGTGGT 59.163 34.615 7.30 0.00 33.83 4.16
693 2421 4.959839 ACAAAGGGTATTTGAGTGGTGTTT 59.040 37.500 7.30 0.00 33.83 2.83
896 3229 5.814314 TCAACACAAACAAAACAAAGACG 57.186 34.783 0.00 0.00 0.00 4.18
1089 3423 1.268948 GCCTACGATCCCAACTACGTC 60.269 57.143 0.00 0.00 39.59 4.34
1682 4069 2.185004 ATTACCTGCAAGCACTCGTT 57.815 45.000 0.00 0.00 0.00 3.85
1742 4129 1.078637 GGGGCTGGAGTCGTTTACC 60.079 63.158 0.00 0.00 0.00 2.85
2142 4594 7.771927 AACTCCAACAAAGATCTCATGATTT 57.228 32.000 13.72 0.00 32.19 2.17
2189 4641 6.990939 TGAAATTTGTTTTGATTCAGCCATCA 59.009 30.769 0.00 0.00 0.00 3.07
2210 4662 4.221262 TCATGAAATTTCCAAAGCTGGGAG 59.779 41.667 15.48 0.00 43.71 4.30
2338 4790 4.310740 ACCATCAGAAATCCCCTCAGTAT 58.689 43.478 0.00 0.00 0.00 2.12
2435 4887 8.177663 ACAAACTCATAGATGAAAATGTTAGCG 58.822 33.333 0.00 0.00 36.18 4.26
2548 5000 1.404035 GCCTGCCCCAAGTTTATTACG 59.596 52.381 0.00 0.00 0.00 3.18
2598 5050 8.186163 GCCACTTACAAATTATAACCAGGTAAC 58.814 37.037 0.00 0.00 0.00 2.50
2682 5134 8.828751 TCTACCATGTAACCCTACTTGTTTTAT 58.171 33.333 0.00 0.00 33.40 1.40
2735 5187 4.324267 ACTCTTTGGTAGTTGGAAATCCG 58.676 43.478 0.00 0.00 39.43 4.18
2785 5237 7.094334 GGGTTAGGTTTTTCTTGTCCTATTCAG 60.094 40.741 0.00 0.00 33.38 3.02
2787 5239 5.385198 AGGTTTTTCTTGTCCTATTCAGCA 58.615 37.500 0.00 0.00 0.00 4.41
2991 5444 4.580580 AGGAACAAGACAGTTGCTAAAAGG 59.419 41.667 0.00 0.00 46.39 3.11
3036 5489 7.611213 TGCATAAAGAGGCTAGTTTTCTTAC 57.389 36.000 0.07 0.00 32.18 2.34
3041 5494 5.153950 AGAGGCTAGTTTTCTTACCAGTG 57.846 43.478 0.00 0.00 0.00 3.66
3062 5515 0.460987 AGCTGCTAGCATGTCGGTTC 60.461 55.000 19.72 0.59 45.56 3.62
3297 5766 6.506500 CTTCAATTGAAGCTGTTCCTGTAT 57.493 37.500 29.90 0.00 44.10 2.29
3426 5895 3.434641 CACTTAGGTCTGTGTGAGCATTG 59.565 47.826 0.00 0.00 44.98 2.82
3433 5902 3.059325 GTCTGTGTGAGCATTGACTTGTC 60.059 47.826 0.00 0.00 31.69 3.18
3436 5905 3.947196 TGTGTGAGCATTGACTTGTCTTT 59.053 39.130 2.35 0.00 0.00 2.52
3437 5906 4.201940 TGTGTGAGCATTGACTTGTCTTTG 60.202 41.667 2.35 1.69 0.00 2.77
3606 6079 1.623311 TCGATTCTCCTTTCTGTGGCA 59.377 47.619 0.00 0.00 0.00 4.92
3747 6220 2.928757 CACATTGAGCTGCTGTAGTCTC 59.071 50.000 7.01 9.14 33.15 3.36
3750 6223 4.464244 ACATTGAGCTGCTGTAGTCTCTAA 59.536 41.667 7.01 9.58 33.48 2.10
3765 6238 6.814954 AGTCTCTAAATAATTGGAGCTCCA 57.185 37.500 32.00 32.00 42.23 3.86
4704 7243 7.435068 TTCTAGTTCCTGTTTGCTATTTGAC 57.565 36.000 0.00 0.00 0.00 3.18
4747 7286 7.038659 CGAATTGAGAACTTGAGATACCTTCT 58.961 38.462 0.00 0.00 37.41 2.85
4791 7330 2.812011 ACATTTTTCGGCTCACAGGTAC 59.188 45.455 0.00 0.00 0.00 3.34
4794 7333 3.308438 TTTTCGGCTCACAGGTACTAC 57.692 47.619 0.00 0.00 36.02 2.73
4965 7531 2.111043 CGGTGGGTGCTGTGAAGT 59.889 61.111 0.00 0.00 0.00 3.01
5007 7573 2.509336 GGTGCCCTGATGACGACG 60.509 66.667 0.00 0.00 0.00 5.12
5027 7593 4.479993 GGGCTGTGGATCTGCGCT 62.480 66.667 9.73 0.00 45.38 5.92
5028 7594 2.894387 GGCTGTGGATCTGCGCTC 60.894 66.667 9.73 0.00 41.02 5.03
5029 7595 2.186384 GCTGTGGATCTGCGCTCT 59.814 61.111 9.73 0.00 0.00 4.09
5030 7596 2.172372 GCTGTGGATCTGCGCTCTG 61.172 63.158 9.73 0.00 0.00 3.35
5031 7597 2.125391 TGTGGATCTGCGCTCTGC 60.125 61.111 9.73 0.00 46.70 4.26
5060 7626 1.520342 GCTCCCTGCGACATCTGTC 60.520 63.158 0.07 0.07 41.47 3.51
5069 7635 3.442996 GACATCTGTCGTGGGGAAG 57.557 57.895 0.00 0.00 35.12 3.46
5073 7639 2.471084 ATCTGTCGTGGGGAAGGGGA 62.471 60.000 0.00 0.00 0.00 4.81
5074 7640 2.606519 TGTCGTGGGGAAGGGGAG 60.607 66.667 0.00 0.00 0.00 4.30
5076 7642 3.607299 TCGTGGGGAAGGGGAGGA 61.607 66.667 0.00 0.00 0.00 3.71
5153 7758 3.383620 TTGTGTTTGCAATGGGTGATC 57.616 42.857 0.00 0.00 0.00 2.92
5157 7762 0.243365 TTTGCAATGGGTGATCGCAC 59.757 50.000 8.82 4.80 44.39 5.34
5163 7768 4.451150 GGGTGATCGCACTGCCGA 62.451 66.667 8.82 0.00 44.52 5.54
5168 7773 3.932580 GATCGCACTGCCGACCACA 62.933 63.158 0.00 0.00 40.40 4.17
5191 7799 7.918254 CATTGCAATGAGCGATCACATCGTT 62.918 44.000 31.47 1.38 44.20 3.85
5211 7819 1.343142 TCGTGTTGTGATAGGTGTGCT 59.657 47.619 0.00 0.00 0.00 4.40
5279 7892 5.729974 CATGTCACCATCATGTCTTGTAG 57.270 43.478 0.00 0.00 38.17 2.74
5280 7893 4.890158 TGTCACCATCATGTCTTGTAGT 57.110 40.909 0.00 0.00 0.00 2.73
5281 7894 5.993748 TGTCACCATCATGTCTTGTAGTA 57.006 39.130 0.00 0.00 0.00 1.82
5282 7895 6.544928 TGTCACCATCATGTCTTGTAGTAT 57.455 37.500 0.00 0.00 0.00 2.12
5283 7896 6.573434 TGTCACCATCATGTCTTGTAGTATC 58.427 40.000 0.00 0.00 0.00 2.24
5284 7897 6.381133 TGTCACCATCATGTCTTGTAGTATCT 59.619 38.462 0.00 0.00 0.00 1.98
5285 7898 6.920758 GTCACCATCATGTCTTGTAGTATCTC 59.079 42.308 0.00 0.00 0.00 2.75
5286 7899 6.040955 TCACCATCATGTCTTGTAGTATCTCC 59.959 42.308 0.00 0.00 0.00 3.71
5287 7900 5.899547 ACCATCATGTCTTGTAGTATCTCCA 59.100 40.000 0.00 0.00 0.00 3.86
5288 7901 6.384015 ACCATCATGTCTTGTAGTATCTCCAA 59.616 38.462 0.00 0.00 0.00 3.53
5289 7902 6.927936 CCATCATGTCTTGTAGTATCTCCAAG 59.072 42.308 0.00 0.00 37.51 3.61
5290 7903 7.201947 CCATCATGTCTTGTAGTATCTCCAAGA 60.202 40.741 1.67 1.67 41.55 3.02
5291 7904 7.904558 TCATGTCTTGTAGTATCTCCAAGAT 57.095 36.000 7.74 0.00 44.43 2.40
5292 7905 8.996651 TCATGTCTTGTAGTATCTCCAAGATA 57.003 34.615 7.74 6.16 44.43 1.98
5293 7906 9.421399 TCATGTCTTGTAGTATCTCCAAGATAA 57.579 33.333 7.74 2.18 44.43 1.75
5302 7915 9.256228 GTAGTATCTCCAAGATAATACCCATGA 57.744 37.037 17.53 0.00 45.62 3.07
5303 7916 8.372877 AGTATCTCCAAGATAATACCCATGAG 57.627 38.462 0.00 0.00 38.78 2.90
5304 7917 6.633325 ATCTCCAAGATAATACCCATGAGG 57.367 41.667 0.00 0.00 35.69 3.86
5305 7918 4.287067 TCTCCAAGATAATACCCATGAGGC 59.713 45.833 0.00 0.00 40.58 4.70
5306 7919 4.242811 TCCAAGATAATACCCATGAGGCT 58.757 43.478 0.00 0.00 40.58 4.58
5307 7920 4.042062 TCCAAGATAATACCCATGAGGCTG 59.958 45.833 0.00 0.00 40.58 4.85
5308 7921 4.202503 CCAAGATAATACCCATGAGGCTGT 60.203 45.833 0.00 0.00 40.58 4.40
5309 7922 5.380043 CAAGATAATACCCATGAGGCTGTT 58.620 41.667 0.00 0.00 40.58 3.16
5310 7923 5.653255 AGATAATACCCATGAGGCTGTTT 57.347 39.130 0.00 0.00 40.58 2.83
5311 7924 5.380043 AGATAATACCCATGAGGCTGTTTG 58.620 41.667 0.00 0.00 40.58 2.93
5312 7925 2.442236 ATACCCATGAGGCTGTTTGG 57.558 50.000 0.00 0.00 40.58 3.28
5313 7926 4.023137 CCCATGAGGCTGTTTGGG 57.977 61.111 10.62 10.62 42.72 4.12
5314 7927 2.353610 CCCATGAGGCTGTTTGGGC 61.354 63.158 11.79 0.00 42.23 5.36
5315 7928 1.304713 CCATGAGGCTGTTTGGGCT 60.305 57.895 0.00 0.00 44.87 5.19
5319 7932 3.984732 AGGCTGTTTGGGCTCCCC 61.985 66.667 1.89 0.00 45.71 4.81
5328 7941 4.083862 GGGCTCCCCGAGTGACAC 62.084 72.222 0.00 0.00 32.13 3.67
5329 7942 2.997897 GGCTCCCCGAGTGACACT 60.998 66.667 8.12 8.12 31.39 3.55
5330 7943 2.584391 GGCTCCCCGAGTGACACTT 61.584 63.158 10.01 0.00 31.39 3.16
5331 7944 1.079750 GCTCCCCGAGTGACACTTC 60.080 63.158 10.01 2.49 31.39 3.01
5332 7945 1.213013 CTCCCCGAGTGACACTTCG 59.787 63.158 10.01 13.76 0.00 3.79
5333 7946 2.214181 CTCCCCGAGTGACACTTCGG 62.214 65.000 26.42 26.42 38.07 4.30
5334 7947 2.432628 CCCGAGTGACACTTCGGC 60.433 66.667 27.29 10.28 37.49 5.54
5335 7948 2.651361 CCGAGTGACACTTCGGCT 59.349 61.111 23.94 0.00 34.20 5.52
5336 7949 1.006102 CCGAGTGACACTTCGGCTT 60.006 57.895 23.94 0.00 34.20 4.35
5337 7950 0.242825 CCGAGTGACACTTCGGCTTA 59.757 55.000 23.94 0.00 34.20 3.09
5338 7951 1.135083 CCGAGTGACACTTCGGCTTAT 60.135 52.381 23.94 0.00 34.20 1.73
5339 7952 2.607187 CGAGTGACACTTCGGCTTATT 58.393 47.619 10.01 0.00 0.00 1.40
5340 7953 2.993899 CGAGTGACACTTCGGCTTATTT 59.006 45.455 10.01 0.00 0.00 1.40
5341 7954 3.181530 CGAGTGACACTTCGGCTTATTTG 60.182 47.826 10.01 0.00 0.00 2.32
5342 7955 3.074412 AGTGACACTTCGGCTTATTTGG 58.926 45.455 1.07 0.00 0.00 3.28
5343 7956 2.161609 GTGACACTTCGGCTTATTTGGG 59.838 50.000 0.00 0.00 0.00 4.12
5344 7957 2.039216 TGACACTTCGGCTTATTTGGGA 59.961 45.455 0.00 0.00 0.00 4.37
5345 7958 2.678336 GACACTTCGGCTTATTTGGGAG 59.322 50.000 0.00 0.00 0.00 4.30
5346 7959 2.304761 ACACTTCGGCTTATTTGGGAGA 59.695 45.455 0.00 0.00 0.00 3.71
5347 7960 3.054361 ACACTTCGGCTTATTTGGGAGAT 60.054 43.478 0.00 0.00 0.00 2.75
5348 7961 3.947834 CACTTCGGCTTATTTGGGAGATT 59.052 43.478 0.00 0.00 0.00 2.40
5349 7962 4.035675 CACTTCGGCTTATTTGGGAGATTC 59.964 45.833 0.00 0.00 0.00 2.52
5350 7963 4.080299 ACTTCGGCTTATTTGGGAGATTCT 60.080 41.667 0.00 0.00 0.00 2.40
5351 7964 4.073293 TCGGCTTATTTGGGAGATTCTC 57.927 45.455 5.03 5.03 0.00 2.87
5352 7965 3.454447 TCGGCTTATTTGGGAGATTCTCA 59.546 43.478 15.36 0.00 31.08 3.27
5353 7966 4.080582 TCGGCTTATTTGGGAGATTCTCAA 60.081 41.667 15.36 2.04 34.53 3.02
5354 7967 4.823989 CGGCTTATTTGGGAGATTCTCAAT 59.176 41.667 15.36 8.97 36.62 2.57
5355 7968 5.997746 CGGCTTATTTGGGAGATTCTCAATA 59.002 40.000 15.36 8.09 36.62 1.90
5356 7969 6.486657 CGGCTTATTTGGGAGATTCTCAATAA 59.513 38.462 15.36 13.98 36.62 1.40
5357 7970 7.013274 CGGCTTATTTGGGAGATTCTCAATAAA 59.987 37.037 15.36 12.17 36.62 1.40
5358 7971 8.138074 GGCTTATTTGGGAGATTCTCAATAAAC 58.862 37.037 15.36 11.13 36.62 2.01
5359 7972 8.907885 GCTTATTTGGGAGATTCTCAATAAACT 58.092 33.333 15.36 1.81 36.62 2.66
5394 8007 8.917088 ACCTACTAATAAAGCAGTTATTACCGA 58.083 33.333 7.98 0.00 41.64 4.69
5395 8008 9.408069 CCTACTAATAAAGCAGTTATTACCGAG 57.592 37.037 7.98 4.64 41.64 4.63
5396 8009 9.962783 CTACTAATAAAGCAGTTATTACCGAGT 57.037 33.333 7.98 8.72 41.64 4.18
5420 8033 3.902881 TTTTTGCAAAAGAGCCCTTGA 57.097 38.095 22.78 4.04 31.91 3.02
5421 8034 3.902881 TTTTGCAAAAGAGCCCTTGAA 57.097 38.095 20.46 0.00 31.91 2.69
5422 8035 3.457610 TTTGCAAAAGAGCCCTTGAAG 57.542 42.857 10.02 0.00 31.91 3.02
5423 8036 2.071778 TGCAAAAGAGCCCTTGAAGT 57.928 45.000 0.00 0.00 31.91 3.01
5424 8037 2.387757 TGCAAAAGAGCCCTTGAAGTT 58.612 42.857 0.00 0.00 31.91 2.66
5425 8038 2.765699 TGCAAAAGAGCCCTTGAAGTTT 59.234 40.909 0.00 0.00 31.91 2.66
5426 8039 3.957497 TGCAAAAGAGCCCTTGAAGTTTA 59.043 39.130 0.00 0.00 31.91 2.01
5427 8040 4.202111 TGCAAAAGAGCCCTTGAAGTTTAC 60.202 41.667 0.00 0.00 31.91 2.01
5428 8041 4.202111 GCAAAAGAGCCCTTGAAGTTTACA 60.202 41.667 0.00 0.00 31.91 2.41
5429 8042 5.281727 CAAAAGAGCCCTTGAAGTTTACAC 58.718 41.667 0.00 0.00 31.91 2.90
5430 8043 3.857157 AGAGCCCTTGAAGTTTACACA 57.143 42.857 0.00 0.00 0.00 3.72
5431 8044 4.164843 AGAGCCCTTGAAGTTTACACAA 57.835 40.909 0.00 0.00 0.00 3.33
5432 8045 4.532834 AGAGCCCTTGAAGTTTACACAAA 58.467 39.130 0.00 0.00 0.00 2.83
5433 8046 5.140454 AGAGCCCTTGAAGTTTACACAAAT 58.860 37.500 0.00 0.00 0.00 2.32
5434 8047 5.241728 AGAGCCCTTGAAGTTTACACAAATC 59.758 40.000 0.00 0.00 0.00 2.17
5435 8048 4.892934 AGCCCTTGAAGTTTACACAAATCA 59.107 37.500 0.00 0.00 0.00 2.57
5436 8049 5.362430 AGCCCTTGAAGTTTACACAAATCAA 59.638 36.000 0.00 0.00 0.00 2.57
5437 8050 5.462068 GCCCTTGAAGTTTACACAAATCAAC 59.538 40.000 0.00 0.00 0.00 3.18
5438 8051 5.983118 CCCTTGAAGTTTACACAAATCAACC 59.017 40.000 0.00 0.00 0.00 3.77
5439 8052 5.983118 CCTTGAAGTTTACACAAATCAACCC 59.017 40.000 0.00 0.00 0.00 4.11
5440 8053 5.176407 TGAAGTTTACACAAATCAACCCG 57.824 39.130 0.00 0.00 0.00 5.28
5441 8054 3.636282 AGTTTACACAAATCAACCCGC 57.364 42.857 0.00 0.00 0.00 6.13
5442 8055 2.952978 AGTTTACACAAATCAACCCGCA 59.047 40.909 0.00 0.00 0.00 5.69
5443 8056 3.004315 AGTTTACACAAATCAACCCGCAG 59.996 43.478 0.00 0.00 0.00 5.18
5444 8057 2.264005 TACACAAATCAACCCGCAGT 57.736 45.000 0.00 0.00 0.00 4.40
5445 8058 0.951558 ACACAAATCAACCCGCAGTC 59.048 50.000 0.00 0.00 0.00 3.51
5446 8059 0.240945 CACAAATCAACCCGCAGTCC 59.759 55.000 0.00 0.00 0.00 3.85
5447 8060 0.179004 ACAAATCAACCCGCAGTCCA 60.179 50.000 0.00 0.00 0.00 4.02
5448 8061 0.958091 CAAATCAACCCGCAGTCCAA 59.042 50.000 0.00 0.00 0.00 3.53
5449 8062 1.339610 CAAATCAACCCGCAGTCCAAA 59.660 47.619 0.00 0.00 0.00 3.28
5450 8063 1.923356 AATCAACCCGCAGTCCAAAT 58.077 45.000 0.00 0.00 0.00 2.32
5451 8064 1.463674 ATCAACCCGCAGTCCAAATC 58.536 50.000 0.00 0.00 0.00 2.17
5452 8065 0.608035 TCAACCCGCAGTCCAAATCC 60.608 55.000 0.00 0.00 0.00 3.01
5453 8066 1.304134 AACCCGCAGTCCAAATCCC 60.304 57.895 0.00 0.00 0.00 3.85
5454 8067 2.075355 AACCCGCAGTCCAAATCCCA 62.075 55.000 0.00 0.00 0.00 4.37
5455 8068 1.076777 CCCGCAGTCCAAATCCCAT 60.077 57.895 0.00 0.00 0.00 4.00
5456 8069 1.103398 CCCGCAGTCCAAATCCCATC 61.103 60.000 0.00 0.00 0.00 3.51
5457 8070 0.107017 CCGCAGTCCAAATCCCATCT 60.107 55.000 0.00 0.00 0.00 2.90
5458 8071 1.303309 CGCAGTCCAAATCCCATCTC 58.697 55.000 0.00 0.00 0.00 2.75
5459 8072 1.685148 GCAGTCCAAATCCCATCTCC 58.315 55.000 0.00 0.00 0.00 3.71
5460 8073 1.213926 GCAGTCCAAATCCCATCTCCT 59.786 52.381 0.00 0.00 0.00 3.69
5461 8074 2.747799 GCAGTCCAAATCCCATCTCCTC 60.748 54.545 0.00 0.00 0.00 3.71
5462 8075 2.131023 AGTCCAAATCCCATCTCCTCC 58.869 52.381 0.00 0.00 0.00 4.30
5463 8076 2.131023 GTCCAAATCCCATCTCCTCCT 58.869 52.381 0.00 0.00 0.00 3.69
5464 8077 2.105649 GTCCAAATCCCATCTCCTCCTC 59.894 54.545 0.00 0.00 0.00 3.71
5465 8078 2.130193 CCAAATCCCATCTCCTCCTCA 58.870 52.381 0.00 0.00 0.00 3.86
5466 8079 2.158696 CCAAATCCCATCTCCTCCTCAC 60.159 54.545 0.00 0.00 0.00 3.51
5467 8080 1.813102 AATCCCATCTCCTCCTCACC 58.187 55.000 0.00 0.00 0.00 4.02
5468 8081 0.104725 ATCCCATCTCCTCCTCACCC 60.105 60.000 0.00 0.00 0.00 4.61
5469 8082 2.136878 CCCATCTCCTCCTCACCCG 61.137 68.421 0.00 0.00 0.00 5.28
5470 8083 2.801631 CCATCTCCTCCTCACCCGC 61.802 68.421 0.00 0.00 0.00 6.13
5471 8084 2.835431 ATCTCCTCCTCACCCGCG 60.835 66.667 0.00 0.00 0.00 6.46
5474 8087 4.458829 TCCTCCTCACCCGCGGAT 62.459 66.667 30.73 6.36 0.00 4.18
5475 8088 3.470888 CCTCCTCACCCGCGGATT 61.471 66.667 30.73 10.67 0.00 3.01
5476 8089 2.584608 CTCCTCACCCGCGGATTT 59.415 61.111 30.73 7.51 0.00 2.17
5477 8090 1.521681 CTCCTCACCCGCGGATTTC 60.522 63.158 30.73 0.00 0.00 2.17
5478 8091 1.961180 CTCCTCACCCGCGGATTTCT 61.961 60.000 30.73 0.00 0.00 2.52
5479 8092 1.078426 CCTCACCCGCGGATTTCTT 60.078 57.895 30.73 0.00 0.00 2.52
5480 8093 1.090052 CCTCACCCGCGGATTTCTTC 61.090 60.000 30.73 0.00 0.00 2.87
5481 8094 1.421410 CTCACCCGCGGATTTCTTCG 61.421 60.000 30.73 9.82 0.00 3.79
5486 8099 3.174788 GCGGATTTCTTCGCCGTT 58.825 55.556 0.00 0.00 46.38 4.44
5487 8100 1.060465 GCGGATTTCTTCGCCGTTC 59.940 57.895 0.00 0.00 46.38 3.95
5488 8101 1.632046 GCGGATTTCTTCGCCGTTCA 61.632 55.000 0.00 0.00 46.38 3.18
5489 8102 0.094730 CGGATTTCTTCGCCGTTCAC 59.905 55.000 0.00 0.00 40.17 3.18
5490 8103 0.094730 GGATTTCTTCGCCGTTCACG 59.905 55.000 0.00 0.00 39.44 4.35
5500 8113 4.796231 CGTTCACGGCTCCCCTCG 62.796 72.222 0.00 0.00 35.37 4.63
5501 8114 3.692406 GTTCACGGCTCCCCTCGT 61.692 66.667 0.00 0.00 40.49 4.18
5502 8115 3.379445 TTCACGGCTCCCCTCGTC 61.379 66.667 0.00 0.00 37.53 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.835682 AGTGTCAATTGGAGATGGATTATCAAA 59.164 33.333 5.42 0.00 38.31 2.69
66 67 7.334858 TAAAAATGCTTTTTCCTTGACAAGGT 58.665 30.769 29.23 11.29 41.95 3.50
98 99 6.096987 TGACCACTATCCACTTCACTTAGATC 59.903 42.308 0.00 0.00 0.00 2.75
115 116 5.655090 TGGAAGATTCGATACTTGACCACTA 59.345 40.000 8.88 0.00 0.00 2.74
122 123 4.129380 TGCCATGGAAGATTCGATACTTG 58.871 43.478 18.40 0.00 0.00 3.16
130 131 5.490159 TCCAAAAATTGCCATGGAAGATTC 58.510 37.500 18.40 0.00 38.95 2.52
142 144 0.038343 TCCTGCGCTCCAAAAATTGC 60.038 50.000 9.73 0.00 0.00 3.56
145 147 4.402155 TGATTATTCCTGCGCTCCAAAAAT 59.598 37.500 9.73 1.95 0.00 1.82
151 153 2.771089 TGATGATTATTCCTGCGCTCC 58.229 47.619 9.73 0.00 0.00 4.70
153 155 4.823442 TCAAATGATGATTATTCCTGCGCT 59.177 37.500 9.73 0.00 31.50 5.92
154 156 4.913924 GTCAAATGATGATTATTCCTGCGC 59.086 41.667 0.00 0.00 40.97 6.09
155 157 6.309712 AGTCAAATGATGATTATTCCTGCG 57.690 37.500 0.00 0.00 40.97 5.18
156 158 8.613060 TCTAGTCAAATGATGATTATTCCTGC 57.387 34.615 0.00 0.00 40.97 4.85
191 194 5.074115 TCGAGGAAATAAACAAACATGGGT 58.926 37.500 0.00 0.00 0.00 4.51
192 195 5.637006 TCGAGGAAATAAACAAACATGGG 57.363 39.130 0.00 0.00 0.00 4.00
194 197 9.787532 ACATTATCGAGGAAATAAACAAACATG 57.212 29.630 0.00 0.00 0.00 3.21
237 240 3.523157 TCCCTGCCTACTTCATGATTTGA 59.477 43.478 0.00 0.00 0.00 2.69
242 245 2.642311 TGTTTCCCTGCCTACTTCATGA 59.358 45.455 0.00 0.00 0.00 3.07
260 263 0.108138 CTCCGCCCTTCTCGATTGTT 60.108 55.000 0.00 0.00 0.00 2.83
263 266 1.395826 CCTCTCCGCCCTTCTCGATT 61.396 60.000 0.00 0.00 0.00 3.34
266 269 2.440430 TCCTCTCCGCCCTTCTCG 60.440 66.667 0.00 0.00 0.00 4.04
276 279 2.247358 GGTCATCTCATCCTCCTCTCC 58.753 57.143 0.00 0.00 0.00 3.71
277 280 2.627699 GTGGTCATCTCATCCTCCTCTC 59.372 54.545 0.00 0.00 0.00 3.20
292 295 1.175654 TTACTATCACGCGGTGGTCA 58.824 50.000 12.47 0.00 33.87 4.02
298 301 0.935196 GCCCTTTTACTATCACGCGG 59.065 55.000 12.47 0.00 0.00 6.46
316 319 0.393402 TGCCTCATGAGATGGTGTGC 60.393 55.000 24.62 16.34 0.00 4.57
326 329 1.532523 TTGCGACATTTGCCTCATGA 58.467 45.000 0.00 0.00 0.00 3.07
327 330 2.572191 ATTGCGACATTTGCCTCATG 57.428 45.000 0.00 0.00 0.00 3.07
328 331 2.231964 ACAATTGCGACATTTGCCTCAT 59.768 40.909 5.05 0.00 30.73 2.90
334 337 5.220006 CGGTTATTGACAATTGCGACATTTG 60.220 40.000 5.89 10.71 32.93 2.32
336 339 4.411327 CGGTTATTGACAATTGCGACATT 58.589 39.130 5.89 3.45 0.00 2.71
342 345 4.167554 TCAACCGGTTATTGACAATTGC 57.832 40.909 21.79 0.00 31.11 3.56
346 349 3.004944 GCCTTTCAACCGGTTATTGACAA 59.995 43.478 21.79 10.11 35.82 3.18
347 350 2.554893 GCCTTTCAACCGGTTATTGACA 59.445 45.455 21.79 6.47 35.82 3.58
350 353 1.889829 TGGCCTTTCAACCGGTTATTG 59.110 47.619 21.79 9.26 0.00 1.90
351 354 2.296073 TGGCCTTTCAACCGGTTATT 57.704 45.000 21.79 0.00 0.00 1.40
355 358 0.893727 GTCATGGCCTTTCAACCGGT 60.894 55.000 0.00 0.00 0.00 5.28
357 360 0.523072 CTGTCATGGCCTTTCAACCG 59.477 55.000 3.32 0.00 0.00 4.44
373 376 2.158475 TCTCCCTGCACAAAATTCCTGT 60.158 45.455 0.00 0.00 0.00 4.00
380 383 0.401738 CCCTCTCTCCCTGCACAAAA 59.598 55.000 0.00 0.00 0.00 2.44
389 392 2.830651 TGTTAGTCTCCCTCTCTCCC 57.169 55.000 0.00 0.00 0.00 4.30
408 411 0.753111 GCGGCCTTTCCCAGAATCAT 60.753 55.000 0.00 0.00 0.00 2.45
426 429 2.928757 CTGATCTAGGCGCTGATATTGC 59.071 50.000 7.64 0.00 0.00 3.56
433 436 4.340076 CAGCTGATCTAGGCGCTG 57.660 61.111 8.42 8.36 43.10 5.18
436 439 1.604947 CCATGTCAGCTGATCTAGGCG 60.605 57.143 21.47 4.62 0.00 5.52
448 451 1.100510 CCAATCCACTGCCATGTCAG 58.899 55.000 1.35 1.35 39.86 3.51
456 459 0.678048 GACCCTGACCAATCCACTGC 60.678 60.000 0.00 0.00 0.00 4.40
457 460 0.692476 TGACCCTGACCAATCCACTG 59.308 55.000 0.00 0.00 0.00 3.66
469 472 1.171308 CCTGCTCAACATTGACCCTG 58.829 55.000 0.00 0.00 32.90 4.45
474 477 3.819368 TCTTTGTCCTGCTCAACATTGA 58.181 40.909 0.00 0.00 35.57 2.57
475 478 4.778534 ATCTTTGTCCTGCTCAACATTG 57.221 40.909 0.00 0.00 0.00 2.82
476 479 5.809001 TCTATCTTTGTCCTGCTCAACATT 58.191 37.500 0.00 0.00 0.00 2.71
509 512 5.554070 CAAAGGGCCTCTTGATCAATTTTT 58.446 37.500 6.46 0.00 35.55 1.94
510 513 4.564199 GCAAAGGGCCTCTTGATCAATTTT 60.564 41.667 23.75 3.31 35.55 1.82
527 530 2.214376 TGATTACACCTGGGCAAAGG 57.786 50.000 0.00 4.05 43.57 3.11
532 535 2.092429 TCCTTGATGATTACACCTGGGC 60.092 50.000 0.00 0.00 0.00 5.36
533 536 3.931907 TCCTTGATGATTACACCTGGG 57.068 47.619 0.00 0.00 0.00 4.45
535 538 4.785301 ACCATCCTTGATGATTACACCTG 58.215 43.478 5.67 0.00 42.09 4.00
539 542 5.607939 ACGTACCATCCTTGATGATTACA 57.392 39.130 5.67 0.00 42.09 2.41
540 543 6.978338 TCTACGTACCATCCTTGATGATTAC 58.022 40.000 5.67 5.91 42.09 1.89
541 544 7.776618 ATCTACGTACCATCCTTGATGATTA 57.223 36.000 5.67 0.00 42.09 1.75
560 563 7.365741 TGATCCTAACGTCGGAAAATATCTAC 58.634 38.462 10.19 0.00 33.55 2.59
563 566 6.700520 AGTTGATCCTAACGTCGGAAAATATC 59.299 38.462 10.19 4.57 35.73 1.63
564 567 6.579865 AGTTGATCCTAACGTCGGAAAATAT 58.420 36.000 10.19 0.00 35.73 1.28
565 568 5.969423 AGTTGATCCTAACGTCGGAAAATA 58.031 37.500 10.19 0.00 35.73 1.40
566 569 4.828829 AGTTGATCCTAACGTCGGAAAAT 58.171 39.130 10.19 0.00 35.73 1.82
568 571 3.947910 AGTTGATCCTAACGTCGGAAA 57.052 42.857 10.19 0.00 35.73 3.13
569 572 3.947910 AAGTTGATCCTAACGTCGGAA 57.052 42.857 10.19 0.00 35.73 4.30
570 573 3.947910 AAAGTTGATCCTAACGTCGGA 57.052 42.857 8.76 8.76 35.73 4.55
571 574 5.404946 TCTTAAAGTTGATCCTAACGTCGG 58.595 41.667 0.00 0.00 35.73 4.79
587 2315 7.962918 CCGGTGACACTTTAATCATTCTTAAAG 59.037 37.037 5.39 12.44 46.76 1.85
593 2321 5.622770 AACCGGTGACACTTTAATCATTC 57.377 39.130 8.52 0.00 0.00 2.67
610 2338 7.446013 TGCCCTCTTTTACATTATATAAACCGG 59.554 37.037 0.00 0.00 0.00 5.28
617 2345 9.160412 ACTACTCTGCCCTCTTTTACATTATAT 57.840 33.333 0.00 0.00 0.00 0.86
618 2346 8.548880 ACTACTCTGCCCTCTTTTACATTATA 57.451 34.615 0.00 0.00 0.00 0.98
619 2347 7.439108 ACTACTCTGCCCTCTTTTACATTAT 57.561 36.000 0.00 0.00 0.00 1.28
630 2358 1.474143 GCCATCAACTACTCTGCCCTC 60.474 57.143 0.00 0.00 0.00 4.30
634 2362 0.811616 CGGGCCATCAACTACTCTGC 60.812 60.000 4.39 0.00 0.00 4.26
638 2366 4.706842 AAATATCGGGCCATCAACTACT 57.293 40.909 4.39 0.00 0.00 2.57
641 2369 5.473504 GTGATAAAATATCGGGCCATCAACT 59.526 40.000 4.39 0.00 0.00 3.16
651 2379 9.730420 CCCTTTGTAAAAGTGATAAAATATCGG 57.270 33.333 0.00 0.00 0.00 4.18
661 2389 8.576442 CACTCAAATACCCTTTGTAAAAGTGAT 58.424 33.333 9.75 0.00 34.18 3.06
674 2402 3.139397 TGGAAACACCACTCAAATACCCT 59.861 43.478 0.00 0.00 44.64 4.34
723 2451 8.167605 TCTCGAAGGATTAGTGTTAGATTAGG 57.832 38.462 0.00 0.00 0.00 2.69
733 3052 8.485976 AAATCTTCTTTCTCGAAGGATTAGTG 57.514 34.615 0.00 0.00 40.56 2.74
734 3053 9.508642 AAAAATCTTCTTTCTCGAAGGATTAGT 57.491 29.630 0.00 0.00 40.56 2.24
765 3089 7.254692 CCCAATATATATTTCTGCAGATCGCTG 60.255 40.741 19.04 5.73 45.13 5.18
821 3154 0.174617 CTTCAGGAGTTCTCGGAGCC 59.825 60.000 0.00 0.00 0.00 4.70
832 3165 1.318158 GGTTGCATGGGCTTCAGGAG 61.318 60.000 0.00 0.00 41.91 3.69
896 3229 1.135402 CGCTTTGTTGGTATGGCCTTC 60.135 52.381 3.32 0.00 38.35 3.46
967 3300 1.636148 GGGGTTTGGTTAGGGTTTCC 58.364 55.000 0.00 0.00 0.00 3.13
1545 3879 7.806409 AGCAAAATAAAATTGAAGCCTTTGT 57.194 28.000 0.00 0.00 0.00 2.83
1546 3880 8.960075 CAAAGCAAAATAAAATTGAAGCCTTTG 58.040 29.630 0.00 0.00 32.82 2.77
1557 3891 9.933723 ACTGAATCTAGCAAAGCAAAATAAAAT 57.066 25.926 0.00 0.00 0.00 1.82
1604 3991 7.389053 AGAACAGAATGAACAACTAGATTGTCC 59.611 37.037 0.00 0.00 44.10 4.02
1621 4008 3.306502 CCATGCCTGCAAAAGAACAGAAT 60.307 43.478 0.00 0.00 35.90 2.40
1682 4069 1.550072 TGTGCGATCATGGACTTCTCA 59.450 47.619 0.00 0.00 0.00 3.27
1742 4129 3.829044 TCATACCCGTCGGTGGCG 61.829 66.667 11.06 0.00 44.40 5.69
2162 4614 6.347696 TGGCTGAATCAAAACAAATTTCACT 58.652 32.000 0.00 0.00 0.00 3.41
2172 4624 7.605410 AATTTCATGATGGCTGAATCAAAAC 57.395 32.000 0.00 0.00 39.90 2.43
2189 4641 4.162651 ACTCCCAGCTTTGGAAATTTCAT 58.837 39.130 19.49 0.00 0.00 2.57
2210 4662 8.989653 ACAGTCTATTAGCTAAAAGAACTGAC 57.010 34.615 29.14 20.07 0.00 3.51
2338 4790 6.072286 GCTCATTTTTCTTCAGAATCTGGTCA 60.072 38.462 10.71 0.00 33.54 4.02
2435 4887 2.884639 TGTACTTTTCTTTCAGCTGGGC 59.115 45.455 15.13 0.00 0.00 5.36
2548 5000 3.165606 CAGAACTGGAGGTGATGGC 57.834 57.895 0.00 0.00 0.00 4.40
2633 5085 7.203218 AGAATTTGCCTGTAGAAACTGAAAAC 58.797 34.615 0.00 0.00 0.00 2.43
2682 5134 9.567776 TCCTTTTCACTACTATTTTGTGATGAA 57.432 29.630 0.00 0.00 39.92 2.57
2706 5158 4.489679 CAACTACCAAAGAGTTGCTTCC 57.510 45.455 2.83 0.00 45.23 3.46
2735 5187 8.145122 CCCTAGAATTGTAGGACTCTGAAATAC 58.855 40.741 26.30 0.00 42.18 1.89
2991 5444 4.439289 GCATCAACTTTACTTCATGGGCTC 60.439 45.833 0.00 0.00 0.00 4.70
3041 5494 0.460987 ACCGACATGCTAGCAGCTTC 60.461 55.000 23.89 16.61 42.97 3.86
3062 5515 2.376109 AGCTTCCATCTGAGCATTTGG 58.624 47.619 0.00 0.00 0.00 3.28
3254 5723 1.298413 CGATAGGCGTCCTGTCACG 60.298 63.158 17.84 10.34 41.02 4.35
3297 5766 0.664761 GCTGTTGCTGCTTCACTTCA 59.335 50.000 0.00 0.00 36.03 3.02
3363 5832 2.969821 ACTGGGCAAGTTTGGTGATA 57.030 45.000 0.00 0.00 34.57 2.15
3726 6199 2.928757 GAGACTACAGCAGCTCAATGTG 59.071 50.000 0.00 0.00 31.53 3.21
3765 6238 6.784031 ACAGACTTGAAGTAAATTCCAGGAT 58.216 36.000 0.00 0.00 35.46 3.24
3775 6248 5.546621 AGTAGGCAACAGACTTGAAGTAA 57.453 39.130 0.00 0.00 41.41 2.24
3776 6249 5.546621 AAGTAGGCAACAGACTTGAAGTA 57.453 39.130 0.00 0.00 41.76 2.24
4717 7256 6.969828 ATCTCAAGTTCTCAATTCGTAACC 57.030 37.500 0.00 0.00 0.00 2.85
4721 7260 6.287589 AGGTATCTCAAGTTCTCAATTCGT 57.712 37.500 0.00 0.00 0.00 3.85
4723 7262 7.821846 ACAGAAGGTATCTCAAGTTCTCAATTC 59.178 37.037 0.00 0.00 35.73 2.17
4747 7286 3.169099 CCCACCCAATTGGATAAACACA 58.831 45.455 26.60 0.00 39.24 3.72
4791 7330 2.158856 TGCAATCAGCCTCCAGATGTAG 60.159 50.000 0.00 0.00 44.83 2.74
4794 7333 1.022735 GTGCAATCAGCCTCCAGATG 58.977 55.000 0.00 0.00 44.83 2.90
4905 7471 0.517316 CCTTTTTCTCACCCGCTTCG 59.483 55.000 0.00 0.00 0.00 3.79
5051 7617 0.108138 CCTTCCCCACGACAGATGTC 60.108 60.000 2.78 2.78 41.47 3.06
5060 7626 2.366972 ATCCTCCCCTTCCCCACG 60.367 66.667 0.00 0.00 0.00 4.94
5069 7635 1.044790 CCCATTGCAACATCCTCCCC 61.045 60.000 0.00 0.00 0.00 4.81
5073 7639 2.498481 CAATGACCCATTGCAACATCCT 59.502 45.455 0.00 0.00 43.38 3.24
5074 7640 2.896168 CAATGACCCATTGCAACATCC 58.104 47.619 0.00 0.00 43.38 3.51
5134 7739 1.269174 CGATCACCCATTGCAAACACA 59.731 47.619 1.71 0.00 0.00 3.72
5153 7758 3.049674 AATGTGGTCGGCAGTGCG 61.050 61.111 9.45 4.79 0.00 5.34
5157 7762 0.457166 CATTGCAATGTGGTCGGCAG 60.457 55.000 27.81 1.67 37.59 4.85
5163 7768 1.402968 GATCGCTCATTGCAATGTGGT 59.597 47.619 32.67 22.09 43.06 4.16
5168 7773 2.032290 CGATGTGATCGCTCATTGCAAT 60.032 45.455 5.99 5.99 46.55 3.56
5191 7799 1.343142 AGCACACCTATCACAACACGA 59.657 47.619 0.00 0.00 0.00 4.35
5260 7873 6.810911 AGATACTACAAGACATGATGGTGAC 58.189 40.000 0.00 0.00 0.00 3.67
5261 7874 6.040955 GGAGATACTACAAGACATGATGGTGA 59.959 42.308 0.00 0.00 0.00 4.02
5262 7875 6.183360 TGGAGATACTACAAGACATGATGGTG 60.183 42.308 0.00 0.00 0.00 4.17
5263 7876 5.899547 TGGAGATACTACAAGACATGATGGT 59.100 40.000 0.00 0.00 0.00 3.55
5264 7877 6.410942 TGGAGATACTACAAGACATGATGG 57.589 41.667 0.00 0.00 0.00 3.51
5274 7887 9.615660 ATGGGTATTATCTTGGAGATACTACAA 57.384 33.333 18.82 11.54 41.39 2.41
5275 7888 9.035890 CATGGGTATTATCTTGGAGATACTACA 57.964 37.037 18.82 7.43 41.39 2.74
5276 7889 9.256228 TCATGGGTATTATCTTGGAGATACTAC 57.744 37.037 13.07 13.07 40.09 2.73
5277 7890 9.480861 CTCATGGGTATTATCTTGGAGATACTA 57.519 37.037 0.00 0.00 36.96 1.82
5278 7891 7.401493 CCTCATGGGTATTATCTTGGAGATACT 59.599 40.741 0.00 0.00 36.96 2.12
5279 7892 7.560368 CCTCATGGGTATTATCTTGGAGATAC 58.440 42.308 0.00 0.00 36.96 2.24
5280 7893 6.156949 GCCTCATGGGTATTATCTTGGAGATA 59.843 42.308 0.00 0.00 35.37 1.98
5281 7894 5.045286 GCCTCATGGGTATTATCTTGGAGAT 60.045 44.000 0.00 0.00 36.75 2.75
5282 7895 4.287067 GCCTCATGGGTATTATCTTGGAGA 59.713 45.833 0.00 0.00 37.43 3.71
5283 7896 4.288105 AGCCTCATGGGTATTATCTTGGAG 59.712 45.833 0.00 0.00 43.12 3.86
5284 7897 4.042062 CAGCCTCATGGGTATTATCTTGGA 59.958 45.833 0.00 0.00 43.07 3.53
5285 7898 4.202503 ACAGCCTCATGGGTATTATCTTGG 60.203 45.833 0.00 0.00 43.07 3.61
5286 7899 4.978099 ACAGCCTCATGGGTATTATCTTG 58.022 43.478 0.00 0.00 43.07 3.02
5287 7900 5.653255 AACAGCCTCATGGGTATTATCTT 57.347 39.130 0.00 0.00 43.07 2.40
5288 7901 5.380043 CAAACAGCCTCATGGGTATTATCT 58.620 41.667 0.00 0.00 43.07 1.98
5289 7902 4.520492 CCAAACAGCCTCATGGGTATTATC 59.480 45.833 0.00 0.00 43.07 1.75
5290 7903 4.473444 CCAAACAGCCTCATGGGTATTAT 58.527 43.478 0.00 0.00 43.07 1.28
5291 7904 3.372566 CCCAAACAGCCTCATGGGTATTA 60.373 47.826 7.00 0.00 46.13 0.98
5292 7905 2.624029 CCCAAACAGCCTCATGGGTATT 60.624 50.000 7.00 0.00 46.13 1.89
5293 7906 1.063717 CCCAAACAGCCTCATGGGTAT 60.064 52.381 7.00 0.00 46.13 2.73
5294 7907 0.331278 CCCAAACAGCCTCATGGGTA 59.669 55.000 7.00 0.00 46.13 3.69
5295 7908 1.077265 CCCAAACAGCCTCATGGGT 59.923 57.895 7.00 0.00 46.13 4.51
5296 7909 4.023137 CCCAAACAGCCTCATGGG 57.977 61.111 1.29 1.29 46.07 4.00
5297 7910 1.304713 AGCCCAAACAGCCTCATGG 60.305 57.895 0.00 0.00 0.00 3.66
5298 7911 1.318158 GGAGCCCAAACAGCCTCATG 61.318 60.000 0.00 0.00 0.00 3.07
5299 7912 1.000396 GGAGCCCAAACAGCCTCAT 60.000 57.895 0.00 0.00 0.00 2.90
5300 7913 2.436109 GGAGCCCAAACAGCCTCA 59.564 61.111 0.00 0.00 0.00 3.86
5301 7914 2.361737 GGGAGCCCAAACAGCCTC 60.362 66.667 0.00 0.00 35.81 4.70
5302 7915 3.984732 GGGGAGCCCAAACAGCCT 61.985 66.667 8.02 0.00 44.65 4.58
5304 7917 4.344865 TCGGGGAGCCCAAACAGC 62.345 66.667 8.02 0.00 45.83 4.40
5305 7918 2.045926 CTCGGGGAGCCCAAACAG 60.046 66.667 8.02 0.00 45.83 3.16
5306 7919 2.852075 ACTCGGGGAGCCCAAACA 60.852 61.111 8.02 0.00 45.83 2.83
5307 7920 2.359975 CACTCGGGGAGCCCAAAC 60.360 66.667 8.02 0.00 45.83 2.93
5308 7921 2.528127 TCACTCGGGGAGCCCAAA 60.528 61.111 8.02 0.00 45.83 3.28
5309 7922 3.319198 GTCACTCGGGGAGCCCAA 61.319 66.667 8.02 0.00 45.83 4.12
5310 7923 4.631740 TGTCACTCGGGGAGCCCA 62.632 66.667 8.02 0.00 45.83 5.36
5311 7924 4.083862 GTGTCACTCGGGGAGCCC 62.084 72.222 0.00 0.00 41.09 5.19
5312 7925 2.508586 GAAGTGTCACTCGGGGAGCC 62.509 65.000 5.82 0.00 32.04 4.70
5313 7926 1.079750 GAAGTGTCACTCGGGGAGC 60.080 63.158 5.82 0.00 32.04 4.70
5314 7927 1.213013 CGAAGTGTCACTCGGGGAG 59.787 63.158 5.82 0.00 35.52 4.30
5315 7928 2.273179 CCGAAGTGTCACTCGGGGA 61.273 63.158 24.55 0.00 36.20 4.81
5316 7929 2.261671 CCGAAGTGTCACTCGGGG 59.738 66.667 24.55 15.32 36.20 5.73
5317 7930 2.432628 GCCGAAGTGTCACTCGGG 60.433 66.667 29.05 22.85 38.46 5.14
5318 7931 0.242825 TAAGCCGAAGTGTCACTCGG 59.757 55.000 26.42 26.42 39.88 4.63
5319 7932 2.279582 ATAAGCCGAAGTGTCACTCG 57.720 50.000 5.82 11.21 0.00 4.18
5320 7933 3.125316 CCAAATAAGCCGAAGTGTCACTC 59.875 47.826 5.82 0.00 0.00 3.51
5321 7934 3.074412 CCAAATAAGCCGAAGTGTCACT 58.926 45.455 0.00 0.00 0.00 3.41
5322 7935 2.161609 CCCAAATAAGCCGAAGTGTCAC 59.838 50.000 0.00 0.00 0.00 3.67
5323 7936 2.039216 TCCCAAATAAGCCGAAGTGTCA 59.961 45.455 0.00 0.00 0.00 3.58
5324 7937 2.678336 CTCCCAAATAAGCCGAAGTGTC 59.322 50.000 0.00 0.00 0.00 3.67
5325 7938 2.304761 TCTCCCAAATAAGCCGAAGTGT 59.695 45.455 0.00 0.00 0.00 3.55
5326 7939 2.985896 TCTCCCAAATAAGCCGAAGTG 58.014 47.619 0.00 0.00 0.00 3.16
5327 7940 3.933861 ATCTCCCAAATAAGCCGAAGT 57.066 42.857 0.00 0.00 0.00 3.01
5328 7941 4.455606 AGAATCTCCCAAATAAGCCGAAG 58.544 43.478 0.00 0.00 0.00 3.79
5329 7942 4.080582 TGAGAATCTCCCAAATAAGCCGAA 60.081 41.667 7.91 0.00 34.92 4.30
5330 7943 3.454447 TGAGAATCTCCCAAATAAGCCGA 59.546 43.478 7.91 0.00 34.92 5.54
5331 7944 3.808728 TGAGAATCTCCCAAATAAGCCG 58.191 45.455 7.91 0.00 34.92 5.52
5332 7945 7.823745 TTATTGAGAATCTCCCAAATAAGCC 57.176 36.000 7.91 0.00 34.92 4.35
5333 7946 8.907885 AGTTTATTGAGAATCTCCCAAATAAGC 58.092 33.333 7.91 12.28 34.92 3.09
5368 7981 8.917088 TCGGTAATAACTGCTTTATTAGTAGGT 58.083 33.333 9.90 0.00 41.39 3.08
5369 7982 9.408069 CTCGGTAATAACTGCTTTATTAGTAGG 57.592 37.037 9.90 3.45 41.39 3.18
5370 7983 9.962783 ACTCGGTAATAACTGCTTTATTAGTAG 57.037 33.333 9.90 9.85 41.39 2.57
5400 8013 3.902881 TCAAGGGCTCTTTTGCAAAAA 57.097 38.095 23.92 14.27 34.04 1.94
5401 8014 3.197549 ACTTCAAGGGCTCTTTTGCAAAA 59.802 39.130 22.61 22.61 34.04 2.44
5402 8015 2.765699 ACTTCAAGGGCTCTTTTGCAAA 59.234 40.909 8.05 8.05 34.04 3.68
5403 8016 2.387757 ACTTCAAGGGCTCTTTTGCAA 58.612 42.857 0.00 0.00 34.04 4.08
5404 8017 2.071778 ACTTCAAGGGCTCTTTTGCA 57.928 45.000 0.00 0.00 34.04 4.08
5405 8018 3.459232 AAACTTCAAGGGCTCTTTTGC 57.541 42.857 0.00 0.00 0.00 3.68
5406 8019 5.163561 TGTGTAAACTTCAAGGGCTCTTTTG 60.164 40.000 0.00 0.00 0.00 2.44
5407 8020 4.953579 TGTGTAAACTTCAAGGGCTCTTTT 59.046 37.500 0.00 0.00 0.00 2.27
5408 8021 4.532834 TGTGTAAACTTCAAGGGCTCTTT 58.467 39.130 0.00 0.00 0.00 2.52
5409 8022 4.164843 TGTGTAAACTTCAAGGGCTCTT 57.835 40.909 0.00 0.00 0.00 2.85
5410 8023 3.857157 TGTGTAAACTTCAAGGGCTCT 57.143 42.857 0.00 0.00 0.00 4.09
5411 8024 4.911514 TTTGTGTAAACTTCAAGGGCTC 57.088 40.909 0.00 0.00 0.00 4.70
5412 8025 4.892934 TGATTTGTGTAAACTTCAAGGGCT 59.107 37.500 0.00 0.00 0.00 5.19
5413 8026 5.195001 TGATTTGTGTAAACTTCAAGGGC 57.805 39.130 0.00 0.00 0.00 5.19
5414 8027 5.983118 GGTTGATTTGTGTAAACTTCAAGGG 59.017 40.000 0.00 0.00 29.92 3.95
5415 8028 5.983118 GGGTTGATTTGTGTAAACTTCAAGG 59.017 40.000 0.00 0.00 29.92 3.61
5416 8029 5.685511 CGGGTTGATTTGTGTAAACTTCAAG 59.314 40.000 0.00 0.00 29.92 3.02
5417 8030 5.583495 CGGGTTGATTTGTGTAAACTTCAA 58.417 37.500 0.00 0.00 0.00 2.69
5418 8031 4.498345 GCGGGTTGATTTGTGTAAACTTCA 60.498 41.667 0.00 0.00 0.00 3.02
5419 8032 3.978855 GCGGGTTGATTTGTGTAAACTTC 59.021 43.478 0.00 0.00 0.00 3.01
5420 8033 3.381908 TGCGGGTTGATTTGTGTAAACTT 59.618 39.130 0.00 0.00 0.00 2.66
5421 8034 2.952978 TGCGGGTTGATTTGTGTAAACT 59.047 40.909 0.00 0.00 0.00 2.66
5422 8035 3.243267 ACTGCGGGTTGATTTGTGTAAAC 60.243 43.478 0.00 0.00 0.00 2.01
5423 8036 2.952978 ACTGCGGGTTGATTTGTGTAAA 59.047 40.909 0.00 0.00 0.00 2.01
5424 8037 2.550606 GACTGCGGGTTGATTTGTGTAA 59.449 45.455 0.00 0.00 0.00 2.41
5425 8038 2.147958 GACTGCGGGTTGATTTGTGTA 58.852 47.619 0.00 0.00 0.00 2.90
5426 8039 0.951558 GACTGCGGGTTGATTTGTGT 59.048 50.000 0.00 0.00 0.00 3.72
5427 8040 0.240945 GGACTGCGGGTTGATTTGTG 59.759 55.000 0.00 0.00 0.00 3.33
5428 8041 0.179004 TGGACTGCGGGTTGATTTGT 60.179 50.000 0.00 0.00 0.00 2.83
5429 8042 0.958091 TTGGACTGCGGGTTGATTTG 59.042 50.000 0.00 0.00 0.00 2.32
5430 8043 1.698506 TTTGGACTGCGGGTTGATTT 58.301 45.000 0.00 0.00 0.00 2.17
5431 8044 1.818674 GATTTGGACTGCGGGTTGATT 59.181 47.619 0.00 0.00 0.00 2.57
5432 8045 1.463674 GATTTGGACTGCGGGTTGAT 58.536 50.000 0.00 0.00 0.00 2.57
5433 8046 0.608035 GGATTTGGACTGCGGGTTGA 60.608 55.000 0.00 0.00 0.00 3.18
5434 8047 1.595093 GGGATTTGGACTGCGGGTTG 61.595 60.000 0.00 0.00 0.00 3.77
5435 8048 1.304134 GGGATTTGGACTGCGGGTT 60.304 57.895 0.00 0.00 0.00 4.11
5436 8049 1.863155 ATGGGATTTGGACTGCGGGT 61.863 55.000 0.00 0.00 0.00 5.28
5437 8050 1.076777 ATGGGATTTGGACTGCGGG 60.077 57.895 0.00 0.00 0.00 6.13
5438 8051 0.107017 AGATGGGATTTGGACTGCGG 60.107 55.000 0.00 0.00 0.00 5.69
5439 8052 1.303309 GAGATGGGATTTGGACTGCG 58.697 55.000 0.00 0.00 0.00 5.18
5440 8053 1.213926 AGGAGATGGGATTTGGACTGC 59.786 52.381 0.00 0.00 0.00 4.40
5441 8054 2.158696 GGAGGAGATGGGATTTGGACTG 60.159 54.545 0.00 0.00 0.00 3.51
5442 8055 2.131023 GGAGGAGATGGGATTTGGACT 58.869 52.381 0.00 0.00 0.00 3.85
5443 8056 2.105649 GAGGAGGAGATGGGATTTGGAC 59.894 54.545 0.00 0.00 0.00 4.02
5444 8057 2.293788 TGAGGAGGAGATGGGATTTGGA 60.294 50.000 0.00 0.00 0.00 3.53
5445 8058 2.130193 TGAGGAGGAGATGGGATTTGG 58.870 52.381 0.00 0.00 0.00 3.28
5446 8059 2.158696 GGTGAGGAGGAGATGGGATTTG 60.159 54.545 0.00 0.00 0.00 2.32
5447 8060 2.131023 GGTGAGGAGGAGATGGGATTT 58.869 52.381 0.00 0.00 0.00 2.17
5448 8061 1.697291 GGGTGAGGAGGAGATGGGATT 60.697 57.143 0.00 0.00 0.00 3.01
5449 8062 0.104725 GGGTGAGGAGGAGATGGGAT 60.105 60.000 0.00 0.00 0.00 3.85
5450 8063 1.314867 GGGTGAGGAGGAGATGGGA 59.685 63.158 0.00 0.00 0.00 4.37
5451 8064 2.136878 CGGGTGAGGAGGAGATGGG 61.137 68.421 0.00 0.00 0.00 4.00
5452 8065 2.801631 GCGGGTGAGGAGGAGATGG 61.802 68.421 0.00 0.00 0.00 3.51
5453 8066 2.818132 GCGGGTGAGGAGGAGATG 59.182 66.667 0.00 0.00 0.00 2.90
5454 8067 2.835431 CGCGGGTGAGGAGGAGAT 60.835 66.667 0.00 0.00 0.00 2.75
5461 8074 1.078426 AAGAAATCCGCGGGTGAGG 60.078 57.895 27.83 0.00 36.20 3.86
5462 8075 1.421410 CGAAGAAATCCGCGGGTGAG 61.421 60.000 27.83 2.81 0.00 3.51
5463 8076 1.447140 CGAAGAAATCCGCGGGTGA 60.447 57.895 27.83 6.34 0.00 4.02
5464 8077 3.089784 CGAAGAAATCCGCGGGTG 58.910 61.111 27.83 0.00 0.00 4.61
5465 8078 2.818274 GCGAAGAAATCCGCGGGT 60.818 61.111 27.83 18.03 42.02 5.28
5471 8084 0.094730 CGTGAACGGCGAAGAAATCC 59.905 55.000 16.62 0.00 35.37 3.01
5472 8085 3.562869 CGTGAACGGCGAAGAAATC 57.437 52.632 16.62 2.30 35.37 2.17
5483 8096 4.796231 CGAGGGGAGCCGTGAACG 62.796 72.222 0.00 0.00 39.44 3.95
5484 8097 3.644399 GACGAGGGGAGCCGTGAAC 62.644 68.421 0.00 0.00 39.30 3.18
5485 8098 3.379445 GACGAGGGGAGCCGTGAA 61.379 66.667 0.00 0.00 39.30 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.