Multiple sequence alignment - TraesCS3B01G180400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G180400 chr3B 100.000 4281 0 0 1 4281 188183425 188179145 0.000000e+00 7906.0
1 TraesCS3B01G180400 chr3B 92.008 976 68 7 2661 3631 478578849 478577879 0.000000e+00 1362.0
2 TraesCS3B01G180400 chr3B 90.693 967 39 12 558 1511 478583040 478582112 0.000000e+00 1240.0
3 TraesCS3B01G180400 chr3B 91.475 739 45 10 1795 2519 478579643 478578909 0.000000e+00 1000.0
4 TraesCS3B01G180400 chr3B 83.237 173 26 2 188 360 159374461 159374292 5.730000e-34 156.0
5 TraesCS3B01G180400 chr3B 94.444 54 0 3 2497 2550 478578907 478578857 3.550000e-11 80.5
6 TraesCS3B01G180400 chr3D 95.405 1828 72 5 858 2675 131490154 131488329 0.000000e+00 2900.0
7 TraesCS3B01G180400 chr3D 97.762 983 20 2 2674 3654 131488099 131487117 0.000000e+00 1692.0
8 TraesCS3B01G180400 chr3D 93.710 620 26 3 242 861 131490947 131490341 0.000000e+00 917.0
9 TraesCS3B01G180400 chr3D 93.197 294 19 1 3791 4083 508588744 508589037 8.500000e-117 431.0
10 TraesCS3B01G180400 chr3D 94.059 202 10 2 4082 4281 131486932 131486731 5.380000e-79 305.0
11 TraesCS3B01G180400 chr3D 97.203 143 3 1 3656 3798 131487070 131486929 1.540000e-59 241.0
12 TraesCS3B01G180400 chr3D 93.103 87 6 0 1750 1836 389633129 389633215 1.250000e-25 128.0
13 TraesCS3B01G180400 chr3A 92.323 990 62 7 2621 3599 144449073 144448087 0.000000e+00 1395.0
14 TraesCS3B01G180400 chr3A 92.579 822 39 7 397 1210 144470574 144469767 0.000000e+00 1160.0
15 TraesCS3B01G180400 chr3A 88.310 864 62 19 1795 2624 144450000 144449142 0.000000e+00 1000.0
16 TraesCS3B01G180400 chr3A 98.288 292 5 0 3795 4086 67439261 67438970 2.950000e-141 512.0
17 TraesCS3B01G180400 chr3A 95.563 293 11 2 3797 4087 170392060 170391768 6.480000e-128 468.0
18 TraesCS3B01G180400 chr3A 84.320 338 23 11 65 396 144474549 144474236 1.930000e-78 303.0
19 TraesCS3B01G180400 chr3A 90.452 199 16 3 1316 1511 144466276 144466078 4.250000e-65 259.0
20 TraesCS3B01G180400 chr3A 91.954 87 7 0 1750 1836 510299778 510299864 5.810000e-24 122.0
21 TraesCS3B01G180400 chr3A 87.234 94 12 0 1743 1836 224976123 224976030 1.630000e-19 108.0
22 TraesCS3B01G180400 chr3A 86.735 98 10 3 1743 1838 383299569 383299473 5.850000e-19 106.0
23 TraesCS3B01G180400 chr7A 97.924 289 6 0 3795 4083 86246144 86246432 6.390000e-138 501.0
24 TraesCS3B01G180400 chr7A 94.845 291 13 2 3797 4086 671238755 671238466 1.810000e-123 453.0
25 TraesCS3B01G180400 chr7A 93.857 293 16 2 3795 4085 33088899 33088607 1.410000e-119 440.0
26 TraesCS3B01G180400 chr7A 90.588 85 5 2 1752 1836 465783447 465783366 4.530000e-20 110.0
27 TraesCS3B01G180400 chr4A 98.252 286 5 0 3797 4082 628928492 628928777 6.390000e-138 501.0
28 TraesCS3B01G180400 chr2A 95.470 287 11 2 3798 4083 776782163 776781878 1.400000e-124 457.0
29 TraesCS3B01G180400 chr2A 84.490 245 31 3 119 363 136852729 136852966 7.160000e-58 235.0
30 TraesCS3B01G180400 chrUn 93.857 293 16 2 3795 4085 82023023 82023315 1.410000e-119 440.0
31 TraesCS3B01G180400 chr5B 77.166 727 140 21 2686 3394 571212541 571211823 2.400000e-107 399.0
32 TraesCS3B01G180400 chr5B 76.381 724 150 16 2686 3394 57708523 57709240 1.880000e-98 370.0
33 TraesCS3B01G180400 chr5B 88.430 121 14 0 245 365 58624679 58624559 3.450000e-31 147.0
34 TraesCS3B01G180400 chr5D 76.648 728 143 20 2686 3394 464125213 464124494 1.120000e-100 377.0
35 TraesCS3B01G180400 chr5D 77.645 586 96 24 2825 3394 464094909 464094343 1.480000e-84 324.0
36 TraesCS3B01G180400 chr5D 89.773 88 9 0 1751 1838 528755094 528755007 3.500000e-21 113.0
37 TraesCS3B01G180400 chr5A 76.087 690 143 17 2691 3366 584592994 584592313 1.470000e-89 340.0
38 TraesCS3B01G180400 chr5A 80.755 265 50 1 3037 3300 584520682 584520418 5.610000e-49 206.0
39 TraesCS3B01G180400 chr5A 83.193 119 19 1 2971 3089 43566598 43566715 1.630000e-19 108.0
40 TraesCS3B01G180400 chr2D 84.971 173 19 6 250 417 540188995 540188825 7.360000e-38 169.0
41 TraesCS3B01G180400 chr4D 79.769 173 27 7 255 421 489986160 489985990 7.520000e-23 119.0
42 TraesCS3B01G180400 chr7D 91.765 85 5 1 1752 1836 407262193 407262111 2.700000e-22 117.0
43 TraesCS3B01G180400 chr7B 90.588 85 6 1 1752 1836 418768111 418768029 1.260000e-20 111.0
44 TraesCS3B01G180400 chr1A 96.552 58 2 0 3656 3713 584507900 584507957 3.520000e-16 97.1
45 TraesCS3B01G180400 chr2B 91.837 49 4 0 4082 4130 206687128 206687080 7.680000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G180400 chr3B 188179145 188183425 4280 True 7906.000 7906 100.0000 1 4281 1 chr3B.!!$R2 4280
1 TraesCS3B01G180400 chr3B 478577879 478583040 5161 True 920.625 1362 92.1550 558 3631 4 chr3B.!!$R3 3073
2 TraesCS3B01G180400 chr3D 131486731 131490947 4216 True 1211.000 2900 95.6278 242 4281 5 chr3D.!!$R1 4039
3 TraesCS3B01G180400 chr3A 144448087 144450000 1913 True 1197.500 1395 90.3165 1795 3599 2 chr3A.!!$R5 1804
4 TraesCS3B01G180400 chr3A 144466078 144474549 8471 True 574.000 1160 89.1170 65 1511 3 chr3A.!!$R6 1446
5 TraesCS3B01G180400 chr5B 571211823 571212541 718 True 399.000 399 77.1660 2686 3394 1 chr5B.!!$R2 708
6 TraesCS3B01G180400 chr5B 57708523 57709240 717 False 370.000 370 76.3810 2686 3394 1 chr5B.!!$F1 708
7 TraesCS3B01G180400 chr5D 464124494 464125213 719 True 377.000 377 76.6480 2686 3394 1 chr5D.!!$R2 708
8 TraesCS3B01G180400 chr5D 464094343 464094909 566 True 324.000 324 77.6450 2825 3394 1 chr5D.!!$R1 569
9 TraesCS3B01G180400 chr5A 584592313 584592994 681 True 340.000 340 76.0870 2691 3366 1 chr5A.!!$R2 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.038310 TGCGGTGAGAAGGAGAGAGA 59.962 55.0 0.00 0.0 0.00 3.10 F
691 4358 0.179034 GAGCATCCTGGTGGACATCC 60.179 60.0 0.00 0.0 46.51 3.51 F
1707 9397 0.895100 CACATGTGGTGGGTTGGAGG 60.895 60.0 18.51 0.0 44.04 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 9365 1.857837 CACATGTGTTTCCGGTTTTGC 59.142 47.619 18.03 0.0 0.00 3.68 R
2254 11748 2.076863 CCACCATTCTCGTCAAAGACC 58.923 52.381 0.00 0.0 0.00 3.85 R
3703 13616 0.035056 GAGCTTAAGGCCCTGCTTGA 60.035 55.000 0.00 0.0 43.05 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.998949 GGTGGCTTGGGGTAGAGG 59.001 66.667 0.00 0.00 0.00 3.69
18 19 2.272471 GTGGCTTGGGGTAGAGGC 59.728 66.667 0.00 0.00 38.78 4.70
19 20 2.204074 TGGCTTGGGGTAGAGGCA 60.204 61.111 0.00 0.00 44.87 4.75
20 21 2.300967 TGGCTTGGGGTAGAGGCAG 61.301 63.158 0.00 0.00 42.62 4.85
21 22 2.124529 GCTTGGGGTAGAGGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
22 23 2.971598 GCTTGGGGTAGAGGCAGCA 61.972 63.158 0.00 0.00 0.00 4.41
23 24 1.222936 CTTGGGGTAGAGGCAGCAG 59.777 63.158 0.00 0.00 0.00 4.24
24 25 2.883267 CTTGGGGTAGAGGCAGCAGC 62.883 65.000 0.00 0.00 41.10 5.25
25 26 4.537433 GGGGTAGAGGCAGCAGCG 62.537 72.222 0.00 0.00 43.41 5.18
26 27 4.537433 GGGTAGAGGCAGCAGCGG 62.537 72.222 0.00 0.00 43.41 5.52
28 29 4.457496 GTAGAGGCAGCAGCGGCA 62.457 66.667 19.73 0.00 44.61 5.69
29 30 3.705289 TAGAGGCAGCAGCGGCAA 61.705 61.111 19.73 0.00 44.61 4.52
30 31 3.670637 TAGAGGCAGCAGCGGCAAG 62.671 63.158 19.73 4.14 44.61 4.01
32 33 4.421515 AGGCAGCAGCGGCAAGAT 62.422 61.111 19.73 0.00 44.61 2.40
33 34 4.189188 GGCAGCAGCGGCAAGATG 62.189 66.667 19.73 4.44 44.61 2.90
77 78 2.124736 GGCTGCGGCAAGGTATGA 60.125 61.111 21.31 0.00 40.87 2.15
83 84 3.749981 GGCAAGGTATGATGGCGG 58.250 61.111 0.00 0.00 32.19 6.13
104 105 1.003051 TTGGTAGGGAGAGAGGCCC 59.997 63.158 0.00 0.00 46.40 5.80
140 141 1.153939 CGACTGCGGTGAGAAGGAG 60.154 63.158 0.80 0.00 0.00 3.69
145 146 0.038310 TGCGGTGAGAAGGAGAGAGA 59.962 55.000 0.00 0.00 0.00 3.10
146 147 0.454196 GCGGTGAGAAGGAGAGAGAC 59.546 60.000 0.00 0.00 0.00 3.36
148 149 1.099689 GGTGAGAAGGAGAGAGACCG 58.900 60.000 0.00 0.00 0.00 4.79
152 153 2.756283 AAGGAGAGAGACCGGCGG 60.756 66.667 27.06 27.06 0.00 6.13
216 217 2.416836 CGTGGAGCCGAAGTTTAGATCA 60.417 50.000 0.00 0.00 0.00 2.92
237 238 4.570772 TCACAGGAGAGAAAACGAAAACTG 59.429 41.667 0.00 0.00 0.00 3.16
341 348 1.604278 GCACAACCTCAACTTGTCTCC 59.396 52.381 0.00 0.00 29.02 3.71
390 397 2.747855 GAAAGGAGGCGTGCCCTG 60.748 66.667 7.39 0.00 46.60 4.45
399 406 1.682451 GGCGTGCCCTGACCTATACA 61.682 60.000 0.00 0.00 0.00 2.29
524 4191 0.690762 GCAGTAAAGGACCAGGACCA 59.309 55.000 10.90 0.00 0.00 4.02
561 4228 3.414700 CGCCGCCGCATCTAATCC 61.415 66.667 0.00 0.00 34.03 3.01
595 4262 4.813526 CTGTCCGTCGAGCGTCGG 62.814 72.222 19.51 19.51 45.47 4.79
597 4264 4.808238 GTCCGTCGAGCGTCGGTC 62.808 72.222 23.14 14.35 44.67 4.79
688 4355 1.003580 GAAAGAGCATCCTGGTGGACA 59.996 52.381 0.00 0.00 46.51 4.02
689 4356 1.293062 AAGAGCATCCTGGTGGACAT 58.707 50.000 0.00 0.00 46.51 3.06
690 4357 0.835941 AGAGCATCCTGGTGGACATC 59.164 55.000 0.00 0.00 46.51 3.06
691 4358 0.179034 GAGCATCCTGGTGGACATCC 60.179 60.000 0.00 0.00 46.51 3.51
692 4359 0.915872 AGCATCCTGGTGGACATCCA 60.916 55.000 0.00 0.00 46.51 3.41
778 4445 4.673968 TCCTTGACTCTGCTCTTACCTTA 58.326 43.478 0.00 0.00 0.00 2.69
797 4464 4.142403 CCTTAGCCAATTTTCAAGATGCGA 60.142 41.667 0.00 0.00 0.00 5.10
892 4749 6.183360 CGGCATATCAATTTAACAGGACAACT 60.183 38.462 0.00 0.00 0.00 3.16
1258 5123 2.944129 ACCTGTTGTGTAAATGGTGCT 58.056 42.857 0.00 0.00 0.00 4.40
1392 8680 7.766219 ATGTGCTTTGAGAATGATTAATTGC 57.234 32.000 0.00 0.00 0.00 3.56
1436 8724 8.312564 AGAAAGAGTGTATGGTTAGTTCTTACC 58.687 37.037 1.60 1.60 34.93 2.85
1517 8811 1.040646 TCACCGTGATCTATCTGCCC 58.959 55.000 0.00 0.00 0.00 5.36
1675 9365 2.258755 GAAAATCGGTGGCAAAATCGG 58.741 47.619 0.00 0.00 0.00 4.18
1707 9397 0.895100 CACATGTGGTGGGTTGGAGG 60.895 60.000 18.51 0.00 44.04 4.30
1813 11292 7.793902 ACAACTTTGTACTAAATTAGCGACAG 58.206 34.615 0.00 0.00 40.16 3.51
1830 11309 4.321008 GCGACAGTTAATATGGATCGGAGA 60.321 45.833 0.00 0.00 45.75 3.71
2165 11656 1.733912 CCAGTGATGATGTGGTTGACG 59.266 52.381 0.00 0.00 0.00 4.35
2177 11668 2.287103 GTGGTTGACGTTGAGAAAGTCC 59.713 50.000 0.00 0.00 38.83 3.85
2245 11739 4.817318 TCCATATTTTCCCTTTGTTGGC 57.183 40.909 0.00 0.00 0.00 4.52
2252 11746 4.494091 TTTCCCTTTGTTGGCAAAATCA 57.506 36.364 0.00 0.00 43.17 2.57
2254 11748 4.005487 TCCCTTTGTTGGCAAAATCATG 57.995 40.909 0.00 0.00 43.17 3.07
2284 11778 2.224079 CGAGAATGGTGGTCAGTTTGTG 59.776 50.000 0.00 0.00 0.00 3.33
2293 11787 2.218603 GGTCAGTTTGTGTACCACCAG 58.781 52.381 0.00 0.00 32.73 4.00
2294 11788 2.158871 GGTCAGTTTGTGTACCACCAGA 60.159 50.000 0.00 0.00 32.73 3.86
2309 11803 5.458595 ACCACCAGAAAGAAGGAGAAAATT 58.541 37.500 0.00 0.00 0.00 1.82
2310 11804 5.302823 ACCACCAGAAAGAAGGAGAAAATTG 59.697 40.000 0.00 0.00 0.00 2.32
2315 11809 6.932960 CCAGAAAGAAGGAGAAAATTGCAAAT 59.067 34.615 1.71 0.00 0.00 2.32
2336 11830 0.826715 TGACTCTGAGGTAGGCATGC 59.173 55.000 9.90 9.90 0.00 4.06
2357 11852 4.041321 TGCTTCATTGATGATAGCTAGGCT 59.959 41.667 19.26 0.00 39.46 4.58
2377 11872 4.453819 GGCTCTGTCATGATATAAGGTTGC 59.546 45.833 0.00 1.85 0.00 4.17
2379 11874 6.459066 GCTCTGTCATGATATAAGGTTGCTA 58.541 40.000 0.00 0.00 0.00 3.49
2390 11885 7.512746 TGATATAAGGTTGCTATAGAGTTGGGT 59.487 37.037 3.21 0.00 0.00 4.51
2423 11918 7.367285 TGTTAAGATGTTGGTGAAATGCTAAC 58.633 34.615 0.00 0.00 0.00 2.34
2435 11930 9.162764 TGGTGAAATGCTAACTTTACTTATCTC 57.837 33.333 0.00 0.00 0.00 2.75
2764 12606 7.325694 GTGTCATGAAAATTGAAATCCCTGAT 58.674 34.615 0.00 0.00 0.00 2.90
3034 12884 2.216898 AGTGTGTTGCTCTTTCTCTGC 58.783 47.619 0.00 0.00 0.00 4.26
3106 12956 2.290832 TGTGATCCTACAGCCAATGCAA 60.291 45.455 0.00 0.00 41.13 4.08
3188 13038 2.121291 TGTGACAACTCCAAGCAACA 57.879 45.000 0.00 0.00 0.00 3.33
3373 13230 3.635836 GGTCTTCCGGTTATACTGCTAGT 59.364 47.826 0.00 0.00 0.00 2.57
3469 13328 3.951306 TCAGTGATTTGTTTGCAAGTCG 58.049 40.909 0.00 0.00 42.15 4.18
3478 13337 0.306533 TTTGCAAGTCGGTCTTTCGC 59.693 50.000 0.00 0.00 33.63 4.70
3537 13396 1.610522 AGCACAATTTCCAGTCACTGC 59.389 47.619 0.00 0.00 0.00 4.40
3640 13508 0.946221 CGCTTCAGCTCGTTTCTGGT 60.946 55.000 0.00 0.00 39.32 4.00
3642 13510 1.873903 GCTTCAGCTCGTTTCTGGTCA 60.874 52.381 0.00 0.00 38.21 4.02
3654 13522 4.868734 CGTTTCTGGTCAGTTTAGGATACC 59.131 45.833 0.00 0.00 37.17 2.73
3731 13644 2.428530 GGGCCTTAAGCTCCATTTCAAG 59.571 50.000 0.84 0.00 43.05 3.02
3777 13690 0.039527 CGTTTCTTTTTCCAGCCGGG 60.040 55.000 2.18 0.00 38.37 5.73
3799 13712 4.851179 GCCTTCGGCCGGTAAGGG 62.851 72.222 34.31 23.60 44.06 3.95
3807 13720 4.438346 CCGGTAAGGGCTCATTCG 57.562 61.111 0.00 0.00 35.97 3.34
3808 13721 1.227556 CCGGTAAGGGCTCATTCGG 60.228 63.158 0.00 0.00 35.97 4.30
3809 13722 1.520666 CGGTAAGGGCTCATTCGGT 59.479 57.895 0.00 0.00 0.00 4.69
3810 13723 0.107848 CGGTAAGGGCTCATTCGGTT 60.108 55.000 0.00 0.00 0.00 4.44
3811 13724 1.677820 CGGTAAGGGCTCATTCGGTTT 60.678 52.381 0.00 0.00 0.00 3.27
3812 13725 1.743394 GGTAAGGGCTCATTCGGTTTG 59.257 52.381 0.00 0.00 0.00 2.93
3813 13726 1.743394 GTAAGGGCTCATTCGGTTTGG 59.257 52.381 0.00 0.00 0.00 3.28
3814 13727 0.404040 AAGGGCTCATTCGGTTTGGA 59.596 50.000 0.00 0.00 0.00 3.53
3815 13728 0.035056 AGGGCTCATTCGGTTTGGAG 60.035 55.000 0.00 0.00 0.00 3.86
3816 13729 1.032114 GGGCTCATTCGGTTTGGAGG 61.032 60.000 0.00 0.00 0.00 4.30
3817 13730 0.035439 GGCTCATTCGGTTTGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
3818 13731 1.408822 GGCTCATTCGGTTTGGAGGAT 60.409 52.381 0.00 0.00 0.00 3.24
3819 13732 2.369394 GCTCATTCGGTTTGGAGGATT 58.631 47.619 0.00 0.00 0.00 3.01
3820 13733 2.755103 GCTCATTCGGTTTGGAGGATTT 59.245 45.455 0.00 0.00 0.00 2.17
3821 13734 3.181496 GCTCATTCGGTTTGGAGGATTTC 60.181 47.826 0.00 0.00 0.00 2.17
3822 13735 4.009675 CTCATTCGGTTTGGAGGATTTCA 58.990 43.478 0.00 0.00 0.00 2.69
3823 13736 4.599041 TCATTCGGTTTGGAGGATTTCAT 58.401 39.130 0.00 0.00 0.00 2.57
3824 13737 5.750524 TCATTCGGTTTGGAGGATTTCATA 58.249 37.500 0.00 0.00 0.00 2.15
3825 13738 6.184068 TCATTCGGTTTGGAGGATTTCATAA 58.816 36.000 0.00 0.00 0.00 1.90
3826 13739 5.890424 TTCGGTTTGGAGGATTTCATAAC 57.110 39.130 0.00 0.00 0.00 1.89
3827 13740 3.936453 TCGGTTTGGAGGATTTCATAACG 59.064 43.478 0.00 0.00 0.00 3.18
3828 13741 3.687698 CGGTTTGGAGGATTTCATAACGT 59.312 43.478 0.00 0.00 0.00 3.99
3829 13742 4.871557 CGGTTTGGAGGATTTCATAACGTA 59.128 41.667 0.00 0.00 0.00 3.57
3830 13743 5.006358 CGGTTTGGAGGATTTCATAACGTAG 59.994 44.000 0.00 0.00 0.00 3.51
3831 13744 5.296035 GGTTTGGAGGATTTCATAACGTAGG 59.704 44.000 0.00 0.00 0.00 3.18
3832 13745 5.943349 TTGGAGGATTTCATAACGTAGGA 57.057 39.130 0.00 0.00 0.00 2.94
3833 13746 5.943349 TGGAGGATTTCATAACGTAGGAA 57.057 39.130 0.00 0.00 0.00 3.36
3834 13747 6.494666 TGGAGGATTTCATAACGTAGGAAT 57.505 37.500 0.00 0.00 0.00 3.01
3835 13748 6.895782 TGGAGGATTTCATAACGTAGGAATT 58.104 36.000 0.00 0.00 0.00 2.17
3836 13749 8.025270 TGGAGGATTTCATAACGTAGGAATTA 57.975 34.615 0.00 0.00 0.00 1.40
3837 13750 8.656806 TGGAGGATTTCATAACGTAGGAATTAT 58.343 33.333 0.00 0.00 0.00 1.28
3838 13751 8.936864 GGAGGATTTCATAACGTAGGAATTATG 58.063 37.037 0.00 0.00 39.25 1.90
3839 13752 9.706691 GAGGATTTCATAACGTAGGAATTATGA 57.293 33.333 2.06 2.06 43.01 2.15
3840 13753 9.490379 AGGATTTCATAACGTAGGAATTATGAC 57.510 33.333 5.15 0.00 43.89 3.06
3841 13754 9.490379 GGATTTCATAACGTAGGAATTATGACT 57.510 33.333 5.15 0.00 43.89 3.41
3868 13781 9.117223 AGTATAGGAATTTTATAGGATGGCACT 57.883 33.333 0.00 0.00 0.00 4.40
3869 13782 9.740710 GTATAGGAATTTTATAGGATGGCACTT 57.259 33.333 0.00 0.00 0.00 3.16
3870 13783 6.966534 AGGAATTTTATAGGATGGCACTTG 57.033 37.500 0.00 0.00 0.00 3.16
3871 13784 5.302823 AGGAATTTTATAGGATGGCACTTGC 59.697 40.000 0.00 0.00 41.14 4.01
3881 13794 4.002797 GCACTTGCCACCCTAAGG 57.997 61.111 0.00 0.00 35.24 2.69
3882 13795 1.378762 GCACTTGCCACCCTAAGGA 59.621 57.895 0.00 0.00 33.82 3.36
3883 13796 0.251165 GCACTTGCCACCCTAAGGAA 60.251 55.000 0.00 0.00 33.82 3.36
3884 13797 1.616994 GCACTTGCCACCCTAAGGAAT 60.617 52.381 0.00 0.00 33.82 3.01
3885 13798 2.807676 CACTTGCCACCCTAAGGAATT 58.192 47.619 0.00 0.00 36.73 2.17
3886 13799 2.493278 CACTTGCCACCCTAAGGAATTG 59.507 50.000 0.00 0.00 36.73 2.32
3887 13800 2.102578 CTTGCCACCCTAAGGAATTGG 58.897 52.381 0.00 0.00 36.73 3.16
3888 13801 0.324275 TGCCACCCTAAGGAATTGGC 60.324 55.000 13.96 13.96 40.97 4.52
3889 13802 0.033109 GCCACCCTAAGGAATTGGCT 60.033 55.000 13.70 0.00 37.90 4.75
3890 13803 2.024306 GCCACCCTAAGGAATTGGCTC 61.024 57.143 13.70 0.00 37.90 4.70
3891 13804 1.668419 CACCCTAAGGAATTGGCTCG 58.332 55.000 0.00 0.00 36.73 5.03
3892 13805 0.107165 ACCCTAAGGAATTGGCTCGC 60.107 55.000 0.00 0.00 36.73 5.03
3893 13806 0.819666 CCCTAAGGAATTGGCTCGCC 60.820 60.000 0.00 0.00 33.47 5.54
3894 13807 0.181350 CCTAAGGAATTGGCTCGCCT 59.819 55.000 9.65 0.00 36.94 5.52
3895 13808 1.587547 CTAAGGAATTGGCTCGCCTC 58.412 55.000 9.65 0.00 36.94 4.70
3896 13809 0.179084 TAAGGAATTGGCTCGCCTCG 60.179 55.000 9.65 0.00 36.94 4.63
3897 13810 2.125106 GGAATTGGCTCGCCTCGT 60.125 61.111 9.65 0.00 36.94 4.18
3898 13811 1.745489 GGAATTGGCTCGCCTCGTT 60.745 57.895 9.65 1.50 36.94 3.85
3899 13812 1.706287 GGAATTGGCTCGCCTCGTTC 61.706 60.000 9.65 9.94 36.94 3.95
3900 13813 1.706287 GAATTGGCTCGCCTCGTTCC 61.706 60.000 9.65 0.00 36.94 3.62
3901 13814 2.185310 AATTGGCTCGCCTCGTTCCT 62.185 55.000 9.65 0.00 36.94 3.36
3902 13815 1.327690 ATTGGCTCGCCTCGTTCCTA 61.328 55.000 9.65 0.00 36.94 2.94
3903 13816 2.104530 GGCTCGCCTCGTTCCTAC 59.895 66.667 0.00 0.00 0.00 3.18
3913 13826 2.911198 CGTTCCTACGCGCAAAATG 58.089 52.632 5.73 0.00 41.41 2.32
3914 13827 0.440758 CGTTCCTACGCGCAAAATGA 59.559 50.000 5.73 0.00 41.41 2.57
3915 13828 1.526986 CGTTCCTACGCGCAAAATGAG 60.527 52.381 5.73 0.00 41.41 2.90
3916 13829 0.446222 TTCCTACGCGCAAAATGAGC 59.554 50.000 5.73 0.00 39.86 4.26
3917 13830 0.391130 TCCTACGCGCAAAATGAGCT 60.391 50.000 5.73 0.00 41.12 4.09
3918 13831 0.447801 CCTACGCGCAAAATGAGCTT 59.552 50.000 5.73 0.00 41.12 3.74
3919 13832 1.135689 CCTACGCGCAAAATGAGCTTT 60.136 47.619 5.73 0.00 41.12 3.51
3920 13833 1.906966 CTACGCGCAAAATGAGCTTTG 59.093 47.619 5.73 0.00 41.12 2.77
3921 13834 0.310543 ACGCGCAAAATGAGCTTTGA 59.689 45.000 5.73 0.00 41.12 2.69
3922 13835 0.979811 CGCGCAAAATGAGCTTTGAG 59.020 50.000 8.75 0.00 41.12 3.02
3923 13836 1.664016 CGCGCAAAATGAGCTTTGAGT 60.664 47.619 8.75 0.00 41.12 3.41
3924 13837 1.717645 GCGCAAAATGAGCTTTGAGTG 59.282 47.619 0.30 0.00 40.12 3.51
3925 13838 2.322161 CGCAAAATGAGCTTTGAGTGG 58.678 47.619 0.00 0.00 38.35 4.00
3926 13839 2.030893 CGCAAAATGAGCTTTGAGTGGA 60.031 45.455 0.00 0.00 38.35 4.02
3927 13840 3.366679 CGCAAAATGAGCTTTGAGTGGAT 60.367 43.478 0.00 0.00 38.35 3.41
3928 13841 3.924686 GCAAAATGAGCTTTGAGTGGATG 59.075 43.478 0.00 0.00 38.35 3.51
3929 13842 4.560108 GCAAAATGAGCTTTGAGTGGATGT 60.560 41.667 0.00 0.00 38.35 3.06
3930 13843 4.778534 AAATGAGCTTTGAGTGGATGTG 57.221 40.909 0.00 0.00 0.00 3.21
3931 13844 2.936919 TGAGCTTTGAGTGGATGTGT 57.063 45.000 0.00 0.00 0.00 3.72
3932 13845 4.558226 ATGAGCTTTGAGTGGATGTGTA 57.442 40.909 0.00 0.00 0.00 2.90
3933 13846 4.350368 TGAGCTTTGAGTGGATGTGTAA 57.650 40.909 0.00 0.00 0.00 2.41
3934 13847 4.910195 TGAGCTTTGAGTGGATGTGTAAT 58.090 39.130 0.00 0.00 0.00 1.89
3935 13848 5.316167 TGAGCTTTGAGTGGATGTGTAATT 58.684 37.500 0.00 0.00 0.00 1.40
3936 13849 5.769662 TGAGCTTTGAGTGGATGTGTAATTT 59.230 36.000 0.00 0.00 0.00 1.82
3937 13850 6.072508 TGAGCTTTGAGTGGATGTGTAATTTC 60.073 38.462 0.00 0.00 0.00 2.17
3938 13851 5.183904 AGCTTTGAGTGGATGTGTAATTTCC 59.816 40.000 0.00 0.00 0.00 3.13
3939 13852 5.183904 GCTTTGAGTGGATGTGTAATTTCCT 59.816 40.000 0.00 0.00 0.00 3.36
3940 13853 6.623767 GCTTTGAGTGGATGTGTAATTTCCTC 60.624 42.308 0.00 0.00 0.00 3.71
3941 13854 4.843728 TGAGTGGATGTGTAATTTCCTCC 58.156 43.478 0.00 0.00 0.00 4.30
3942 13855 4.288366 TGAGTGGATGTGTAATTTCCTCCA 59.712 41.667 0.00 0.00 0.00 3.86
3943 13856 5.222027 TGAGTGGATGTGTAATTTCCTCCAA 60.222 40.000 0.00 0.00 34.75 3.53
3944 13857 5.640147 AGTGGATGTGTAATTTCCTCCAAA 58.360 37.500 0.00 0.00 34.75 3.28
3945 13858 6.074648 AGTGGATGTGTAATTTCCTCCAAAA 58.925 36.000 0.00 0.00 34.75 2.44
3946 13859 6.553100 AGTGGATGTGTAATTTCCTCCAAAAA 59.447 34.615 0.00 0.00 34.75 1.94
3947 13860 6.645003 GTGGATGTGTAATTTCCTCCAAAAAC 59.355 38.462 0.00 0.00 34.75 2.43
3948 13861 6.325028 TGGATGTGTAATTTCCTCCAAAAACA 59.675 34.615 0.00 0.00 30.15 2.83
3949 13862 6.645003 GGATGTGTAATTTCCTCCAAAAACAC 59.355 38.462 0.00 0.00 41.26 3.32
3950 13863 6.531503 TGTGTAATTTCCTCCAAAAACACA 57.468 33.333 11.66 11.66 44.58 3.72
3951 13864 6.568869 TGTGTAATTTCCTCCAAAAACACAG 58.431 36.000 11.66 0.00 43.33 3.66
3952 13865 5.983118 GTGTAATTTCCTCCAAAAACACAGG 59.017 40.000 0.00 0.00 40.91 4.00
3953 13866 5.894393 TGTAATTTCCTCCAAAAACACAGGA 59.106 36.000 0.00 0.00 32.94 3.86
3954 13867 5.948742 AATTTCCTCCAAAAACACAGGAA 57.051 34.783 0.00 0.00 42.23 3.36
3956 13869 5.948742 TTTCCTCCAAAAACACAGGAAAT 57.051 34.783 7.73 0.00 45.86 2.17
3957 13870 4.935352 TCCTCCAAAAACACAGGAAATG 57.065 40.909 0.00 0.00 31.78 2.32
3958 13871 4.541705 TCCTCCAAAAACACAGGAAATGA 58.458 39.130 0.00 0.00 31.78 2.57
3959 13872 4.959210 TCCTCCAAAAACACAGGAAATGAA 59.041 37.500 0.00 0.00 31.78 2.57
3960 13873 5.602145 TCCTCCAAAAACACAGGAAATGAAT 59.398 36.000 0.00 0.00 31.78 2.57
3961 13874 6.780031 TCCTCCAAAAACACAGGAAATGAATA 59.220 34.615 0.00 0.00 31.78 1.75
3962 13875 7.039784 TCCTCCAAAAACACAGGAAATGAATAG 60.040 37.037 0.00 0.00 31.78 1.73
3963 13876 7.255942 CCTCCAAAAACACAGGAAATGAATAGT 60.256 37.037 0.00 0.00 0.00 2.12
3964 13877 8.698973 TCCAAAAACACAGGAAATGAATAGTA 57.301 30.769 0.00 0.00 0.00 1.82
3965 13878 9.308000 TCCAAAAACACAGGAAATGAATAGTAT 57.692 29.630 0.00 0.00 0.00 2.12
3966 13879 9.927668 CCAAAAACACAGGAAATGAATAGTATT 57.072 29.630 0.00 0.00 0.00 1.89
3987 13900 9.139734 AGTATTCCTACGAAATTCCTATACACA 57.860 33.333 0.00 0.00 32.82 3.72
3988 13901 9.924650 GTATTCCTACGAAATTCCTATACACAT 57.075 33.333 0.00 0.00 0.00 3.21
3990 13903 9.847224 ATTCCTACGAAATTCCTATACACATTT 57.153 29.630 0.00 0.00 0.00 2.32
3991 13904 8.882415 TCCTACGAAATTCCTATACACATTTC 57.118 34.615 0.00 0.00 33.88 2.17
3992 13905 7.929785 TCCTACGAAATTCCTATACACATTTCC 59.070 37.037 0.00 0.00 33.73 3.13
3993 13906 7.931948 CCTACGAAATTCCTATACACATTTCCT 59.068 37.037 0.00 0.00 33.73 3.36
3994 13907 9.976511 CTACGAAATTCCTATACACATTTCCTA 57.023 33.333 0.00 0.00 33.73 2.94
3995 13908 8.658499 ACGAAATTCCTATACACATTTCCTAC 57.342 34.615 0.00 0.00 33.73 3.18
3996 13909 8.262227 ACGAAATTCCTATACACATTTCCTACA 58.738 33.333 0.00 0.00 33.73 2.74
3997 13910 9.104965 CGAAATTCCTATACACATTTCCTACAA 57.895 33.333 0.00 0.00 33.73 2.41
4000 13913 8.747538 ATTCCTATACACATTTCCTACAAACC 57.252 34.615 0.00 0.00 0.00 3.27
4001 13914 6.342906 TCCTATACACATTTCCTACAAACCG 58.657 40.000 0.00 0.00 0.00 4.44
4002 13915 6.154877 TCCTATACACATTTCCTACAAACCGA 59.845 38.462 0.00 0.00 0.00 4.69
4003 13916 6.819649 CCTATACACATTTCCTACAAACCGAA 59.180 38.462 0.00 0.00 0.00 4.30
4004 13917 4.823790 ACACATTTCCTACAAACCGAAC 57.176 40.909 0.00 0.00 0.00 3.95
4005 13918 3.249080 ACACATTTCCTACAAACCGAACG 59.751 43.478 0.00 0.00 0.00 3.95
4006 13919 2.224784 ACATTTCCTACAAACCGAACGC 59.775 45.455 0.00 0.00 0.00 4.84
4007 13920 1.950828 TTTCCTACAAACCGAACGCA 58.049 45.000 0.00 0.00 0.00 5.24
4008 13921 2.172851 TTCCTACAAACCGAACGCAT 57.827 45.000 0.00 0.00 0.00 4.73
4009 13922 1.717194 TCCTACAAACCGAACGCATC 58.283 50.000 0.00 0.00 0.00 3.91
4010 13923 1.274167 TCCTACAAACCGAACGCATCT 59.726 47.619 0.00 0.00 0.00 2.90
4011 13924 2.492881 TCCTACAAACCGAACGCATCTA 59.507 45.455 0.00 0.00 0.00 1.98
4012 13925 3.131577 TCCTACAAACCGAACGCATCTAT 59.868 43.478 0.00 0.00 0.00 1.98
4013 13926 4.338964 TCCTACAAACCGAACGCATCTATA 59.661 41.667 0.00 0.00 0.00 1.31
4014 13927 4.680110 CCTACAAACCGAACGCATCTATAG 59.320 45.833 0.00 0.00 0.00 1.31
4015 13928 4.380841 ACAAACCGAACGCATCTATAGA 57.619 40.909 4.57 4.57 0.00 1.98
4016 13929 4.751060 ACAAACCGAACGCATCTATAGAA 58.249 39.130 6.52 0.00 0.00 2.10
4017 13930 5.172934 ACAAACCGAACGCATCTATAGAAA 58.827 37.500 6.52 0.00 0.00 2.52
4018 13931 5.640357 ACAAACCGAACGCATCTATAGAAAA 59.360 36.000 6.52 0.00 0.00 2.29
4019 13932 6.315393 ACAAACCGAACGCATCTATAGAAAAT 59.685 34.615 6.52 0.00 0.00 1.82
4020 13933 6.920569 AACCGAACGCATCTATAGAAAATT 57.079 33.333 6.52 0.00 0.00 1.82
4021 13934 6.920569 ACCGAACGCATCTATAGAAAATTT 57.079 33.333 6.52 0.00 0.00 1.82
4022 13935 6.945072 ACCGAACGCATCTATAGAAAATTTC 58.055 36.000 6.52 6.93 0.00 2.17
4023 13936 6.761714 ACCGAACGCATCTATAGAAAATTTCT 59.238 34.615 13.20 13.20 43.72 2.52
4024 13937 7.280205 ACCGAACGCATCTATAGAAAATTTCTT 59.720 33.333 13.89 4.86 41.14 2.52
4025 13938 8.122952 CCGAACGCATCTATAGAAAATTTCTTT 58.877 33.333 13.89 8.63 41.14 2.52
4026 13939 9.148460 CGAACGCATCTATAGAAAATTTCTTTC 57.852 33.333 13.89 7.15 41.14 2.62
4027 13940 9.148460 GAACGCATCTATAGAAAATTTCTTTCG 57.852 33.333 13.89 7.86 41.14 3.46
4028 13941 7.630924 ACGCATCTATAGAAAATTTCTTTCGG 58.369 34.615 13.89 3.72 41.14 4.30
4029 13942 7.072030 CGCATCTATAGAAAATTTCTTTCGGG 58.928 38.462 13.89 1.83 41.14 5.14
4030 13943 7.042051 CGCATCTATAGAAAATTTCTTTCGGGA 60.042 37.037 13.89 6.35 41.14 5.14
4031 13944 8.787852 GCATCTATAGAAAATTTCTTTCGGGAT 58.212 33.333 13.89 8.11 41.14 3.85
4033 13946 8.904099 TCTATAGAAAATTTCTTTCGGGATCC 57.096 34.615 13.89 1.92 41.14 3.36
4034 13947 8.714906 TCTATAGAAAATTTCTTTCGGGATCCT 58.285 33.333 13.89 0.00 41.14 3.24
4035 13948 9.343539 CTATAGAAAATTTCTTTCGGGATCCTT 57.656 33.333 13.89 0.00 41.14 3.36
4036 13949 6.272822 AGAAAATTTCTTTCGGGATCCTTG 57.727 37.500 12.58 4.88 36.36 3.61
4037 13950 5.775195 AGAAAATTTCTTTCGGGATCCTTGT 59.225 36.000 12.58 0.00 36.36 3.16
4038 13951 6.267699 AGAAAATTTCTTTCGGGATCCTTGTT 59.732 34.615 12.58 0.00 36.36 2.83
4039 13952 5.644977 AATTTCTTTCGGGATCCTTGTTC 57.355 39.130 12.58 0.00 0.00 3.18
4040 13953 2.781681 TCTTTCGGGATCCTTGTTCC 57.218 50.000 12.58 0.00 0.00 3.62
4041 13954 2.266279 TCTTTCGGGATCCTTGTTCCT 58.734 47.619 12.58 0.00 33.53 3.36
4042 13955 3.446968 TCTTTCGGGATCCTTGTTCCTA 58.553 45.455 12.58 0.00 33.53 2.94
4043 13956 4.037927 TCTTTCGGGATCCTTGTTCCTAT 58.962 43.478 12.58 0.00 33.53 2.57
4044 13957 3.838244 TTCGGGATCCTTGTTCCTATG 57.162 47.619 12.58 0.00 33.53 2.23
4045 13958 2.759355 TCGGGATCCTTGTTCCTATGT 58.241 47.619 12.58 0.00 33.53 2.29
4046 13959 2.434336 TCGGGATCCTTGTTCCTATGTG 59.566 50.000 12.58 0.00 33.53 3.21
4047 13960 2.170607 CGGGATCCTTGTTCCTATGTGT 59.829 50.000 12.58 0.00 33.53 3.72
4048 13961 3.370527 CGGGATCCTTGTTCCTATGTGTT 60.371 47.826 12.58 0.00 33.53 3.32
4049 13962 4.600062 GGGATCCTTGTTCCTATGTGTTT 58.400 43.478 12.58 0.00 33.53 2.83
4050 13963 5.016831 GGGATCCTTGTTCCTATGTGTTTT 58.983 41.667 12.58 0.00 33.53 2.43
4051 13964 5.125578 GGGATCCTTGTTCCTATGTGTTTTC 59.874 44.000 12.58 0.00 33.53 2.29
4052 13965 5.946377 GGATCCTTGTTCCTATGTGTTTTCT 59.054 40.000 3.84 0.00 0.00 2.52
4053 13966 7.110155 GGATCCTTGTTCCTATGTGTTTTCTA 58.890 38.462 3.84 0.00 0.00 2.10
4054 13967 7.775561 GGATCCTTGTTCCTATGTGTTTTCTAT 59.224 37.037 3.84 0.00 0.00 1.98
4055 13968 7.921786 TCCTTGTTCCTATGTGTTTTCTATG 57.078 36.000 0.00 0.00 0.00 2.23
4056 13969 7.685481 TCCTTGTTCCTATGTGTTTTCTATGA 58.315 34.615 0.00 0.00 0.00 2.15
4057 13970 8.160765 TCCTTGTTCCTATGTGTTTTCTATGAA 58.839 33.333 0.00 0.00 0.00 2.57
4058 13971 8.792633 CCTTGTTCCTATGTGTTTTCTATGAAA 58.207 33.333 0.00 0.00 0.00 2.69
4062 13975 9.788960 GTTCCTATGTGTTTTCTATGAAAATCC 57.211 33.333 8.43 4.11 0.00 3.01
4063 13976 9.753674 TTCCTATGTGTTTTCTATGAAAATCCT 57.246 29.630 8.43 2.99 0.00 3.24
4064 13977 9.396022 TCCTATGTGTTTTCTATGAAAATCCTC 57.604 33.333 8.43 0.00 0.00 3.71
4065 13978 8.624776 CCTATGTGTTTTCTATGAAAATCCTCC 58.375 37.037 8.43 0.00 0.00 4.30
4066 13979 9.177608 CTATGTGTTTTCTATGAAAATCCTCCA 57.822 33.333 8.43 0.43 0.00 3.86
4067 13980 7.831691 TGTGTTTTCTATGAAAATCCTCCAA 57.168 32.000 8.43 0.00 0.00 3.53
4068 13981 8.243961 TGTGTTTTCTATGAAAATCCTCCAAA 57.756 30.769 8.43 0.00 0.00 3.28
4069 13982 8.141268 TGTGTTTTCTATGAAAATCCTCCAAAC 58.859 33.333 8.43 0.00 0.00 2.93
4070 13983 7.598869 GTGTTTTCTATGAAAATCCTCCAAACC 59.401 37.037 8.43 0.00 0.00 3.27
4071 13984 6.509418 TTTCTATGAAAATCCTCCAAACCG 57.491 37.500 0.00 0.00 0.00 4.44
4072 13985 5.429681 TCTATGAAAATCCTCCAAACCGA 57.570 39.130 0.00 0.00 0.00 4.69
4073 13986 5.811190 TCTATGAAAATCCTCCAAACCGAA 58.189 37.500 0.00 0.00 0.00 4.30
4074 13987 6.423182 TCTATGAAAATCCTCCAAACCGAAT 58.577 36.000 0.00 0.00 0.00 3.34
4075 13988 7.570132 TCTATGAAAATCCTCCAAACCGAATA 58.430 34.615 0.00 0.00 0.00 1.75
4076 13989 6.699575 ATGAAAATCCTCCAAACCGAATAG 57.300 37.500 0.00 0.00 0.00 1.73
4078 13991 2.640316 ATCCTCCAAACCGAATAGGC 57.360 50.000 0.00 0.00 46.52 3.93
4079 13992 0.544697 TCCTCCAAACCGAATAGGCC 59.455 55.000 0.00 0.00 46.52 5.19
4080 13993 0.465642 CCTCCAAACCGAATAGGCCC 60.466 60.000 0.00 0.00 46.52 5.80
4081 13994 0.546598 CTCCAAACCGAATAGGCCCT 59.453 55.000 0.00 0.00 46.52 5.19
4082 13995 1.766496 CTCCAAACCGAATAGGCCCTA 59.234 52.381 0.00 0.00 46.52 3.53
4083 13996 2.171870 CTCCAAACCGAATAGGCCCTAA 59.828 50.000 0.00 0.00 46.52 2.69
4174 14087 1.813753 CTAAGGGCGCGCTTGCTTA 60.814 57.895 40.07 24.36 36.08 3.09
4196 14109 2.107953 TTTTGCAGCCCAAACGCC 59.892 55.556 0.07 0.00 42.81 5.68
4197 14110 3.453070 TTTTGCAGCCCAAACGCCC 62.453 57.895 0.07 0.00 42.81 6.13
4213 14126 2.124903 CGCCCGTAGAACATACACATC 58.875 52.381 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.998949 CCTCTACCCCAAGCCACC 59.001 66.667 0.00 0.00 0.00 4.61
1 2 2.272471 GCCTCTACCCCAAGCCAC 59.728 66.667 0.00 0.00 0.00 5.01
2 3 2.204074 TGCCTCTACCCCAAGCCA 60.204 61.111 0.00 0.00 0.00 4.75
3 4 2.592308 CTGCCTCTACCCCAAGCC 59.408 66.667 0.00 0.00 0.00 4.35
4 5 2.124529 GCTGCCTCTACCCCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
5 6 1.222936 CTGCTGCCTCTACCCCAAG 59.777 63.158 0.00 0.00 0.00 3.61
6 7 2.971598 GCTGCTGCCTCTACCCCAA 61.972 63.158 3.85 0.00 0.00 4.12
7 8 3.402681 GCTGCTGCCTCTACCCCA 61.403 66.667 3.85 0.00 0.00 4.96
8 9 4.537433 CGCTGCTGCCTCTACCCC 62.537 72.222 10.24 0.00 35.36 4.95
9 10 4.537433 CCGCTGCTGCCTCTACCC 62.537 72.222 10.24 0.00 35.36 3.69
11 12 3.958147 TTGCCGCTGCTGCCTCTAC 62.958 63.158 13.49 0.00 38.71 2.59
12 13 3.670637 CTTGCCGCTGCTGCCTCTA 62.671 63.158 13.49 0.00 38.71 2.43
15 16 4.421515 ATCTTGCCGCTGCTGCCT 62.422 61.111 13.49 0.00 38.71 4.75
16 17 4.189188 CATCTTGCCGCTGCTGCC 62.189 66.667 13.49 0.00 38.71 4.85
17 18 4.849329 GCATCTTGCCGCTGCTGC 62.849 66.667 9.23 9.23 37.42 5.25
18 19 4.531912 CGCATCTTGCCGCTGCTG 62.532 66.667 0.70 0.00 41.12 4.41
59 60 3.576356 CATACCTTGCCGCAGCCG 61.576 66.667 0.00 0.00 38.69 5.52
60 61 1.526917 ATCATACCTTGCCGCAGCC 60.527 57.895 0.00 0.00 38.69 4.85
61 62 1.650912 CATCATACCTTGCCGCAGC 59.349 57.895 0.00 0.00 40.48 5.25
62 63 1.789078 GCCATCATACCTTGCCGCAG 61.789 60.000 0.00 0.00 0.00 5.18
63 64 1.823470 GCCATCATACCTTGCCGCA 60.823 57.895 0.00 0.00 0.00 5.69
77 78 4.483243 CCCTACCAACGCCGCCAT 62.483 66.667 0.00 0.00 0.00 4.40
83 84 1.817209 CCTCTCTCCCTACCAACGC 59.183 63.158 0.00 0.00 0.00 4.84
120 121 2.259818 CTTCTCACCGCAGTCGCT 59.740 61.111 0.00 0.00 35.30 4.93
124 125 0.251386 TCTCTCCTTCTCACCGCAGT 60.251 55.000 0.00 0.00 0.00 4.40
134 135 2.776913 CCGCCGGTCTCTCTCCTTC 61.777 68.421 1.90 0.00 0.00 3.46
194 195 0.389426 TCTAAACTTCGGCTCCACGC 60.389 55.000 0.00 0.00 38.13 5.34
195 196 2.194271 GATCTAAACTTCGGCTCCACG 58.806 52.381 0.00 0.00 0.00 4.94
203 204 5.568685 TCTCTCCTGTGATCTAAACTTCG 57.431 43.478 0.00 0.00 0.00 3.79
216 217 4.766375 TCAGTTTTCGTTTTCTCTCCTGT 58.234 39.130 0.00 0.00 0.00 4.00
237 238 6.127730 CCAACCTTTCCTAACAACATGGTATC 60.128 42.308 0.00 0.00 0.00 2.24
341 348 5.746307 TCTACGTACAGTGTATAGCTTGG 57.254 43.478 6.21 0.00 0.00 3.61
390 397 8.347771 TGTTGAACGTGTATCTATGTATAGGTC 58.652 37.037 0.00 0.00 0.00 3.85
399 406 3.863424 CGCCTTGTTGAACGTGTATCTAT 59.137 43.478 0.00 0.00 0.00 1.98
450 4117 2.119611 TGCTCCGTCTCCTCCCAA 59.880 61.111 0.00 0.00 0.00 4.12
456 4123 4.500116 GCCTCGTGCTCCGTCTCC 62.500 72.222 0.00 0.00 37.94 3.71
482 4149 3.976701 ATTGGCAAGCGGACGGAGG 62.977 63.158 5.96 0.00 0.00 4.30
595 4262 4.500116 GGGCAGACGGCTCTCGAC 62.500 72.222 0.00 0.00 41.00 4.20
691 4358 3.252215 TGTTCGCCTACCAAACAGATTTG 59.748 43.478 0.00 0.00 44.19 2.32
692 4359 3.252458 GTGTTCGCCTACCAAACAGATTT 59.748 43.478 0.00 0.00 33.84 2.17
693 4360 2.812011 GTGTTCGCCTACCAAACAGATT 59.188 45.455 0.00 0.00 33.84 2.40
694 4361 2.224426 TGTGTTCGCCTACCAAACAGAT 60.224 45.455 0.00 0.00 33.84 2.90
695 4362 1.139256 TGTGTTCGCCTACCAAACAGA 59.861 47.619 0.00 0.00 33.84 3.41
696 4363 1.588674 TGTGTTCGCCTACCAAACAG 58.411 50.000 0.00 0.00 33.84 3.16
778 4445 3.940209 TTCGCATCTTGAAAATTGGCT 57.060 38.095 0.00 0.00 0.00 4.75
1108 4965 3.469008 TGATGTATGCTTTCGTAGGGG 57.531 47.619 0.00 0.00 0.00 4.79
1110 4967 6.027749 GGTTTTTGATGTATGCTTTCGTAGG 58.972 40.000 0.00 0.00 0.00 3.18
1141 5006 7.781324 ACAAATTTGTATTGTCCTCAGGATT 57.219 32.000 22.10 0.00 40.16 3.01
1239 5104 5.446143 TTAAGCACCATTTACACAACAGG 57.554 39.130 0.00 0.00 0.00 4.00
1550 8844 6.808829 TGATTCAATTGACAGCAAAAGTCTT 58.191 32.000 7.89 0.00 37.59 3.01
1551 8845 6.040166 ACTGATTCAATTGACAGCAAAAGTCT 59.960 34.615 20.39 2.28 37.59 3.24
1563 8857 7.707624 AGCCAGAAAATACTGATTCAATTGA 57.292 32.000 3.38 3.38 39.94 2.57
1614 9304 7.541916 ACTTCCCTACATCTTATAGCCTTAC 57.458 40.000 0.00 0.00 0.00 2.34
1619 9309 6.459923 CCTCAACTTCCCTACATCTTATAGC 58.540 44.000 0.00 0.00 0.00 2.97
1675 9365 1.857837 CACATGTGTTTCCGGTTTTGC 59.142 47.619 18.03 0.00 0.00 3.68
1707 9397 4.604156 AGTTCCTCTTTTTCATCATCCCC 58.396 43.478 0.00 0.00 0.00 4.81
1813 11292 7.450124 TGTACTCTCTCCGATCCATATTAAC 57.550 40.000 0.00 0.00 0.00 2.01
2165 11656 5.920840 GGCAAAAACATAGGACTTTCTCAAC 59.079 40.000 0.00 0.00 0.00 3.18
2177 11668 2.161609 GTCCAGGTCGGCAAAAACATAG 59.838 50.000 0.00 0.00 33.14 2.23
2245 11739 5.611796 TCTCGTCAAAGACCATGATTTTG 57.388 39.130 0.00 2.37 34.07 2.44
2252 11746 3.338249 CACCATTCTCGTCAAAGACCAT 58.662 45.455 0.00 0.00 0.00 3.55
2254 11748 2.076863 CCACCATTCTCGTCAAAGACC 58.923 52.381 0.00 0.00 0.00 3.85
2284 11778 4.618920 TTCTCCTTCTTTCTGGTGGTAC 57.381 45.455 0.00 0.00 0.00 3.34
2293 11787 8.829612 TCAAATTTGCAATTTTCTCCTTCTTTC 58.170 29.630 13.54 0.00 0.00 2.62
2294 11788 8.615211 GTCAAATTTGCAATTTTCTCCTTCTTT 58.385 29.630 13.54 0.00 0.00 2.52
2309 11803 4.326826 CCTACCTCAGAGTCAAATTTGCA 58.673 43.478 13.54 0.00 0.00 4.08
2310 11804 3.127721 GCCTACCTCAGAGTCAAATTTGC 59.872 47.826 13.54 8.67 0.00 3.68
2315 11809 2.355108 GCATGCCTACCTCAGAGTCAAA 60.355 50.000 6.36 0.00 0.00 2.69
2336 11830 5.870433 CAGAGCCTAGCTATCATCAATGAAG 59.130 44.000 0.00 0.00 39.88 3.02
2357 11852 9.533831 TCTATAGCAACCTTATATCATGACAGA 57.466 33.333 0.00 0.00 0.00 3.41
2379 11874 9.268282 TCTTAACATTCTTCTACCCAACTCTAT 57.732 33.333 0.00 0.00 0.00 1.98
2390 11885 9.567776 TTTCACCAACATCTTAACATTCTTCTA 57.432 29.630 0.00 0.00 0.00 2.10
2404 11899 7.593825 AGTAAAGTTAGCATTTCACCAACATC 58.406 34.615 0.00 0.00 0.00 3.06
2495 12016 7.904461 CACAAAAACATGAAGAAAATGTTGGTC 59.096 33.333 0.00 0.00 45.25 4.02
2764 12606 3.635373 CAGTAATACCAGGTCCGCTTCTA 59.365 47.826 0.00 0.00 0.00 2.10
2876 12720 6.885918 TCCTTCATCAACACATATGACACAAT 59.114 34.615 10.38 0.00 31.99 2.71
3034 12884 2.060980 CACCTTCTCCTCCTCCCCG 61.061 68.421 0.00 0.00 0.00 5.73
3106 12956 0.869730 GCACCGTAACAATGAACCGT 59.130 50.000 0.00 0.00 0.00 4.83
3335 13186 5.620654 CGGAAGACCTCGTACAAATACTTCA 60.621 44.000 15.60 0.00 35.64 3.02
3373 13230 9.403583 ACAAAGGACAAGTTTTGACTCTTATTA 57.596 29.630 4.18 0.00 37.63 0.98
3469 13328 1.474330 AAATCCCCATGCGAAAGACC 58.526 50.000 0.00 0.00 0.00 3.85
3478 13337 4.219725 ACCGTAGTTTTCAAAATCCCCATG 59.780 41.667 0.00 0.00 0.00 3.66
3537 13396 7.281040 AGATTGTTATGGATATGTTTGCTGG 57.719 36.000 0.00 0.00 0.00 4.85
3676 13589 4.279922 GGGTGCAAGTTTTTACACCTGTAT 59.720 41.667 10.55 0.00 46.03 2.29
3703 13616 0.035056 GAGCTTAAGGCCCTGCTTGA 60.035 55.000 0.00 0.00 43.05 3.02
3731 13644 6.216569 GGGCCTAAGTTTTATACGGTAGTAC 58.783 44.000 0.84 0.00 35.39 2.73
3797 13710 1.032114 CCTCCAAACCGAATGAGCCC 61.032 60.000 0.00 0.00 0.00 5.19
3798 13711 0.035439 TCCTCCAAACCGAATGAGCC 60.035 55.000 0.00 0.00 0.00 4.70
3799 13712 2.044123 ATCCTCCAAACCGAATGAGC 57.956 50.000 0.00 0.00 0.00 4.26
3800 13713 4.009675 TGAAATCCTCCAAACCGAATGAG 58.990 43.478 0.00 0.00 0.00 2.90
3801 13714 4.027674 TGAAATCCTCCAAACCGAATGA 57.972 40.909 0.00 0.00 0.00 2.57
3802 13715 4.989279 ATGAAATCCTCCAAACCGAATG 57.011 40.909 0.00 0.00 0.00 2.67
3803 13716 5.065988 CGTTATGAAATCCTCCAAACCGAAT 59.934 40.000 0.00 0.00 0.00 3.34
3804 13717 4.393680 CGTTATGAAATCCTCCAAACCGAA 59.606 41.667 0.00 0.00 0.00 4.30
3805 13718 3.936453 CGTTATGAAATCCTCCAAACCGA 59.064 43.478 0.00 0.00 0.00 4.69
3806 13719 3.687698 ACGTTATGAAATCCTCCAAACCG 59.312 43.478 0.00 0.00 0.00 4.44
3807 13720 5.296035 CCTACGTTATGAAATCCTCCAAACC 59.704 44.000 0.00 0.00 0.00 3.27
3808 13721 6.110707 TCCTACGTTATGAAATCCTCCAAAC 58.889 40.000 0.00 0.00 0.00 2.93
3809 13722 6.302535 TCCTACGTTATGAAATCCTCCAAA 57.697 37.500 0.00 0.00 0.00 3.28
3810 13723 5.943349 TCCTACGTTATGAAATCCTCCAA 57.057 39.130 0.00 0.00 0.00 3.53
3811 13724 5.943349 TTCCTACGTTATGAAATCCTCCA 57.057 39.130 0.00 0.00 0.00 3.86
3812 13725 8.936864 CATAATTCCTACGTTATGAAATCCTCC 58.063 37.037 0.00 0.00 39.50 4.30
3813 13726 9.706691 TCATAATTCCTACGTTATGAAATCCTC 57.293 33.333 0.00 0.00 41.69 3.71
3814 13727 9.490379 GTCATAATTCCTACGTTATGAAATCCT 57.510 33.333 6.89 0.00 44.41 3.24
3815 13728 9.490379 AGTCATAATTCCTACGTTATGAAATCC 57.510 33.333 6.89 0.00 44.41 3.01
3842 13755 9.117223 AGTGCCATCCTATAAAATTCCTATACT 57.883 33.333 0.00 0.00 0.00 2.12
3843 13756 9.740710 AAGTGCCATCCTATAAAATTCCTATAC 57.259 33.333 0.00 0.00 0.00 1.47
3844 13757 9.739276 CAAGTGCCATCCTATAAAATTCCTATA 57.261 33.333 0.00 0.00 0.00 1.31
3845 13758 7.177392 GCAAGTGCCATCCTATAAAATTCCTAT 59.823 37.037 0.00 0.00 34.31 2.57
3846 13759 6.490040 GCAAGTGCCATCCTATAAAATTCCTA 59.510 38.462 0.00 0.00 34.31 2.94
3847 13760 5.302823 GCAAGTGCCATCCTATAAAATTCCT 59.697 40.000 0.00 0.00 34.31 3.36
3848 13761 5.532557 GCAAGTGCCATCCTATAAAATTCC 58.467 41.667 0.00 0.00 34.31 3.01
3864 13777 0.251165 TTCCTTAGGGTGGCAAGTGC 60.251 55.000 0.00 0.00 41.14 4.40
3865 13778 2.493278 CAATTCCTTAGGGTGGCAAGTG 59.507 50.000 0.00 0.00 0.00 3.16
3866 13779 2.557452 CCAATTCCTTAGGGTGGCAAGT 60.557 50.000 0.00 0.00 0.00 3.16
3867 13780 2.102578 CCAATTCCTTAGGGTGGCAAG 58.897 52.381 0.00 0.00 0.00 4.01
3868 13781 1.894978 GCCAATTCCTTAGGGTGGCAA 60.895 52.381 25.78 4.59 40.37 4.52
3869 13782 0.324275 GCCAATTCCTTAGGGTGGCA 60.324 55.000 25.78 0.00 40.37 4.92
3870 13783 0.033109 AGCCAATTCCTTAGGGTGGC 60.033 55.000 24.34 24.34 40.90 5.01
3871 13784 1.747206 CGAGCCAATTCCTTAGGGTGG 60.747 57.143 10.79 10.79 32.43 4.61
3872 13785 1.668419 CGAGCCAATTCCTTAGGGTG 58.332 55.000 0.00 0.00 32.43 4.61
3873 13786 0.107165 GCGAGCCAATTCCTTAGGGT 60.107 55.000 0.00 0.00 35.52 4.34
3874 13787 0.819666 GGCGAGCCAATTCCTTAGGG 60.820 60.000 9.58 0.00 35.81 3.53
3875 13788 0.181350 AGGCGAGCCAATTCCTTAGG 59.819 55.000 17.18 0.00 38.92 2.69
3876 13789 1.587547 GAGGCGAGCCAATTCCTTAG 58.412 55.000 17.18 0.00 38.92 2.18
3877 13790 0.179084 CGAGGCGAGCCAATTCCTTA 60.179 55.000 17.18 0.00 38.92 2.69
3878 13791 1.450312 CGAGGCGAGCCAATTCCTT 60.450 57.895 17.18 0.00 38.92 3.36
3879 13792 2.185310 AACGAGGCGAGCCAATTCCT 62.185 55.000 17.18 0.00 38.92 3.36
3880 13793 1.706287 GAACGAGGCGAGCCAATTCC 61.706 60.000 17.18 0.00 38.92 3.01
3881 13794 1.706287 GGAACGAGGCGAGCCAATTC 61.706 60.000 17.18 14.85 38.92 2.17
3882 13795 1.745489 GGAACGAGGCGAGCCAATT 60.745 57.895 17.18 7.03 38.92 2.32
3883 13796 1.327690 TAGGAACGAGGCGAGCCAAT 61.328 55.000 17.18 0.00 38.92 3.16
3884 13797 1.980232 TAGGAACGAGGCGAGCCAA 60.980 57.895 17.18 0.00 38.92 4.52
3885 13798 2.361992 TAGGAACGAGGCGAGCCA 60.362 61.111 17.18 0.00 38.92 4.75
3886 13799 2.104530 GTAGGAACGAGGCGAGCC 59.895 66.667 5.89 5.89 0.00 4.70
3896 13809 1.790481 GCTCATTTTGCGCGTAGGAAC 60.790 52.381 8.43 0.00 0.00 3.62
3897 13810 0.446222 GCTCATTTTGCGCGTAGGAA 59.554 50.000 8.43 2.45 0.00 3.36
3898 13811 0.391130 AGCTCATTTTGCGCGTAGGA 60.391 50.000 8.43 0.00 32.55 2.94
3899 13812 0.447801 AAGCTCATTTTGCGCGTAGG 59.552 50.000 8.43 0.00 32.55 3.18
3900 13813 1.906966 CAAAGCTCATTTTGCGCGTAG 59.093 47.619 8.43 0.00 32.55 3.51
3901 13814 1.533299 TCAAAGCTCATTTTGCGCGTA 59.467 42.857 8.43 0.00 37.83 4.42
3902 13815 0.310543 TCAAAGCTCATTTTGCGCGT 59.689 45.000 8.43 0.00 37.83 6.01
3903 13816 0.979811 CTCAAAGCTCATTTTGCGCG 59.020 50.000 0.00 0.00 37.83 6.86
3904 13817 1.717645 CACTCAAAGCTCATTTTGCGC 59.282 47.619 0.00 0.00 37.83 6.09
3905 13818 2.030893 TCCACTCAAAGCTCATTTTGCG 60.031 45.455 0.00 0.00 37.83 4.85
3906 13819 3.648339 TCCACTCAAAGCTCATTTTGC 57.352 42.857 0.00 0.00 37.83 3.68
3907 13820 4.921515 CACATCCACTCAAAGCTCATTTTG 59.078 41.667 0.00 0.00 38.97 2.44
3908 13821 4.586001 ACACATCCACTCAAAGCTCATTTT 59.414 37.500 0.00 0.00 0.00 1.82
3909 13822 4.147321 ACACATCCACTCAAAGCTCATTT 58.853 39.130 0.00 0.00 0.00 2.32
3910 13823 3.759581 ACACATCCACTCAAAGCTCATT 58.240 40.909 0.00 0.00 0.00 2.57
3911 13824 3.430042 ACACATCCACTCAAAGCTCAT 57.570 42.857 0.00 0.00 0.00 2.90
3912 13825 2.936919 ACACATCCACTCAAAGCTCA 57.063 45.000 0.00 0.00 0.00 4.26
3913 13826 5.886960 AATTACACATCCACTCAAAGCTC 57.113 39.130 0.00 0.00 0.00 4.09
3914 13827 5.183904 GGAAATTACACATCCACTCAAAGCT 59.816 40.000 0.00 0.00 33.30 3.74
3915 13828 5.183904 AGGAAATTACACATCCACTCAAAGC 59.816 40.000 0.00 0.00 35.62 3.51
3916 13829 6.127897 GGAGGAAATTACACATCCACTCAAAG 60.128 42.308 0.00 0.00 37.02 2.77
3917 13830 5.710099 GGAGGAAATTACACATCCACTCAAA 59.290 40.000 0.00 0.00 37.02 2.69
3918 13831 5.222027 TGGAGGAAATTACACATCCACTCAA 60.222 40.000 8.71 0.00 41.07 3.02
3919 13832 4.288366 TGGAGGAAATTACACATCCACTCA 59.712 41.667 8.71 0.00 41.07 3.41
3920 13833 4.843728 TGGAGGAAATTACACATCCACTC 58.156 43.478 8.71 0.00 41.07 3.51
3921 13834 4.927267 TGGAGGAAATTACACATCCACT 57.073 40.909 8.71 0.00 41.07 4.00
3922 13835 5.975693 TTTGGAGGAAATTACACATCCAC 57.024 39.130 11.27 0.00 44.61 4.02
3923 13836 6.325028 TGTTTTTGGAGGAAATTACACATCCA 59.675 34.615 8.71 8.71 43.55 3.41
3924 13837 6.645003 GTGTTTTTGGAGGAAATTACACATCC 59.355 38.462 0.00 0.00 38.31 3.51
3925 13838 7.206687 TGTGTTTTTGGAGGAAATTACACATC 58.793 34.615 0.00 0.00 40.70 3.06
3926 13839 7.118496 TGTGTTTTTGGAGGAAATTACACAT 57.882 32.000 0.00 0.00 40.70 3.21
3927 13840 6.406400 CCTGTGTTTTTGGAGGAAATTACACA 60.406 38.462 0.00 0.00 41.91 3.72
3928 13841 5.983118 CCTGTGTTTTTGGAGGAAATTACAC 59.017 40.000 0.00 0.00 38.60 2.90
3929 13842 5.894393 TCCTGTGTTTTTGGAGGAAATTACA 59.106 36.000 0.00 0.00 31.43 2.41
3930 13843 6.399639 TCCTGTGTTTTTGGAGGAAATTAC 57.600 37.500 0.00 0.00 31.43 1.89
3931 13844 7.425224 TTTCCTGTGTTTTTGGAGGAAATTA 57.575 32.000 0.00 0.00 45.48 1.40
3932 13845 5.948742 TTCCTGTGTTTTTGGAGGAAATT 57.051 34.783 0.00 0.00 40.82 1.82
3933 13846 5.948742 TTTCCTGTGTTTTTGGAGGAAAT 57.051 34.783 0.00 0.00 45.48 2.17
3935 13848 4.959210 TCATTTCCTGTGTTTTTGGAGGAA 59.041 37.500 0.00 0.00 41.80 3.36
3936 13849 4.541705 TCATTTCCTGTGTTTTTGGAGGA 58.458 39.130 0.00 0.00 32.56 3.71
3937 13850 4.935352 TCATTTCCTGTGTTTTTGGAGG 57.065 40.909 0.00 0.00 0.00 4.30
3938 13851 7.661040 ACTATTCATTTCCTGTGTTTTTGGAG 58.339 34.615 0.00 0.00 0.00 3.86
3939 13852 7.595819 ACTATTCATTTCCTGTGTTTTTGGA 57.404 32.000 0.00 0.00 0.00 3.53
3940 13853 9.927668 AATACTATTCATTTCCTGTGTTTTTGG 57.072 29.630 0.00 0.00 0.00 3.28
3943 13856 9.533831 AGGAATACTATTCATTTCCTGTGTTTT 57.466 29.630 10.37 0.00 44.80 2.43
3945 13858 9.614792 GTAGGAATACTATTCATTTCCTGTGTT 57.385 33.333 12.19 0.00 45.74 3.32
3946 13859 7.926555 CGTAGGAATACTATTCATTTCCTGTGT 59.073 37.037 12.19 0.00 45.74 3.72
3947 13860 8.141909 TCGTAGGAATACTATTCATTTCCTGTG 58.858 37.037 12.19 5.70 45.74 3.66
3948 13861 8.246430 TCGTAGGAATACTATTCATTTCCTGT 57.754 34.615 12.19 0.00 45.74 4.00
3949 13862 9.542462 TTTCGTAGGAATACTATTCATTTCCTG 57.458 33.333 12.19 0.00 45.74 3.86
3961 13874 9.139734 TGTGTATAGGAATTTCGTAGGAATACT 57.860 33.333 0.00 0.00 30.88 2.12
3962 13875 9.924650 ATGTGTATAGGAATTTCGTAGGAATAC 57.075 33.333 0.00 4.59 30.88 1.89
3964 13877 9.847224 AAATGTGTATAGGAATTTCGTAGGAAT 57.153 29.630 0.00 0.00 30.88 3.01
3965 13878 9.321562 GAAATGTGTATAGGAATTTCGTAGGAA 57.678 33.333 5.21 0.00 31.49 3.36
3966 13879 7.929785 GGAAATGTGTATAGGAATTTCGTAGGA 59.070 37.037 5.21 0.00 39.06 2.94
3967 13880 7.931948 AGGAAATGTGTATAGGAATTTCGTAGG 59.068 37.037 5.21 0.00 39.06 3.18
3968 13881 8.888579 AGGAAATGTGTATAGGAATTTCGTAG 57.111 34.615 5.21 0.00 39.06 3.51
3969 13882 9.754382 GTAGGAAATGTGTATAGGAATTTCGTA 57.246 33.333 1.61 1.61 39.06 3.43
3970 13883 8.262227 TGTAGGAAATGTGTATAGGAATTTCGT 58.738 33.333 0.00 0.00 39.06 3.85
3971 13884 8.657074 TGTAGGAAATGTGTATAGGAATTTCG 57.343 34.615 0.00 0.00 39.06 3.46
3974 13887 9.185680 GGTTTGTAGGAAATGTGTATAGGAATT 57.814 33.333 0.00 0.00 0.00 2.17
3975 13888 7.497909 CGGTTTGTAGGAAATGTGTATAGGAAT 59.502 37.037 0.00 0.00 0.00 3.01
3976 13889 6.819649 CGGTTTGTAGGAAATGTGTATAGGAA 59.180 38.462 0.00 0.00 0.00 3.36
3977 13890 6.154877 TCGGTTTGTAGGAAATGTGTATAGGA 59.845 38.462 0.00 0.00 0.00 2.94
3978 13891 6.342906 TCGGTTTGTAGGAAATGTGTATAGG 58.657 40.000 0.00 0.00 0.00 2.57
3979 13892 7.463648 CGTTCGGTTTGTAGGAAATGTGTATAG 60.464 40.741 0.00 0.00 0.00 1.31
3980 13893 6.310956 CGTTCGGTTTGTAGGAAATGTGTATA 59.689 38.462 0.00 0.00 0.00 1.47
3981 13894 5.121142 CGTTCGGTTTGTAGGAAATGTGTAT 59.879 40.000 0.00 0.00 0.00 2.29
3982 13895 4.448395 CGTTCGGTTTGTAGGAAATGTGTA 59.552 41.667 0.00 0.00 0.00 2.90
3983 13896 3.249080 CGTTCGGTTTGTAGGAAATGTGT 59.751 43.478 0.00 0.00 0.00 3.72
3984 13897 3.805823 CGTTCGGTTTGTAGGAAATGTG 58.194 45.455 0.00 0.00 0.00 3.21
3985 13898 2.224784 GCGTTCGGTTTGTAGGAAATGT 59.775 45.455 0.00 0.00 0.00 2.71
3986 13899 2.224549 TGCGTTCGGTTTGTAGGAAATG 59.775 45.455 0.00 0.00 0.00 2.32
3987 13900 2.496111 TGCGTTCGGTTTGTAGGAAAT 58.504 42.857 0.00 0.00 0.00 2.17
3988 13901 1.950828 TGCGTTCGGTTTGTAGGAAA 58.049 45.000 0.00 0.00 0.00 3.13
3989 13902 2.070783 GATGCGTTCGGTTTGTAGGAA 58.929 47.619 0.00 0.00 0.00 3.36
3990 13903 1.274167 AGATGCGTTCGGTTTGTAGGA 59.726 47.619 0.00 0.00 0.00 2.94
3991 13904 1.722011 AGATGCGTTCGGTTTGTAGG 58.278 50.000 0.00 0.00 0.00 3.18
3992 13905 5.516996 TCTATAGATGCGTTCGGTTTGTAG 58.483 41.667 0.00 0.00 0.00 2.74
3993 13906 5.503662 TCTATAGATGCGTTCGGTTTGTA 57.496 39.130 0.00 0.00 0.00 2.41
3994 13907 4.380841 TCTATAGATGCGTTCGGTTTGT 57.619 40.909 0.00 0.00 0.00 2.83
3995 13908 5.712217 TTTCTATAGATGCGTTCGGTTTG 57.288 39.130 2.58 0.00 0.00 2.93
3996 13909 6.920569 ATTTTCTATAGATGCGTTCGGTTT 57.079 33.333 2.58 0.00 0.00 3.27
3997 13910 6.920569 AATTTTCTATAGATGCGTTCGGTT 57.079 33.333 2.58 0.00 0.00 4.44
3998 13911 6.761714 AGAAATTTTCTATAGATGCGTTCGGT 59.238 34.615 9.92 0.00 38.49 4.69
3999 13912 7.178712 AGAAATTTTCTATAGATGCGTTCGG 57.821 36.000 9.92 0.00 38.49 4.30
4000 13913 9.148460 GAAAGAAATTTTCTATAGATGCGTTCG 57.852 33.333 11.92 0.00 39.61 3.95
4001 13914 9.148460 CGAAAGAAATTTTCTATAGATGCGTTC 57.852 33.333 11.92 7.87 39.61 3.95
4002 13915 8.122952 CCGAAAGAAATTTTCTATAGATGCGTT 58.877 33.333 11.92 0.07 39.61 4.84
4003 13916 7.254795 CCCGAAAGAAATTTTCTATAGATGCGT 60.255 37.037 11.92 0.00 39.61 5.24
4004 13917 7.042051 TCCCGAAAGAAATTTTCTATAGATGCG 60.042 37.037 11.92 6.63 39.61 4.73
4005 13918 8.154649 TCCCGAAAGAAATTTTCTATAGATGC 57.845 34.615 11.92 0.00 39.61 3.91
4007 13920 9.508642 GGATCCCGAAAGAAATTTTCTATAGAT 57.491 33.333 11.92 9.87 39.61 1.98
4008 13921 8.714906 AGGATCCCGAAAGAAATTTTCTATAGA 58.285 33.333 8.55 0.00 39.61 1.98
4009 13922 8.910351 AGGATCCCGAAAGAAATTTTCTATAG 57.090 34.615 8.55 6.43 39.61 1.31
4010 13923 9.120538 CAAGGATCCCGAAAGAAATTTTCTATA 57.879 33.333 8.55 0.00 39.61 1.31
4011 13924 7.615757 ACAAGGATCCCGAAAGAAATTTTCTAT 59.384 33.333 8.55 1.31 39.61 1.98
4012 13925 6.946009 ACAAGGATCCCGAAAGAAATTTTCTA 59.054 34.615 8.55 0.00 39.61 2.10
4013 13926 5.775195 ACAAGGATCCCGAAAGAAATTTTCT 59.225 36.000 8.55 5.82 43.15 2.52
4014 13927 6.025749 ACAAGGATCCCGAAAGAAATTTTC 57.974 37.500 8.55 0.66 0.00 2.29
4015 13928 6.419484 AACAAGGATCCCGAAAGAAATTTT 57.581 33.333 8.55 0.00 0.00 1.82
4016 13929 5.047306 GGAACAAGGATCCCGAAAGAAATTT 60.047 40.000 8.55 0.00 0.00 1.82
4017 13930 4.462834 GGAACAAGGATCCCGAAAGAAATT 59.537 41.667 8.55 0.00 0.00 1.82
4018 13931 4.017126 GGAACAAGGATCCCGAAAGAAAT 58.983 43.478 8.55 0.00 0.00 2.17
4019 13932 3.073946 AGGAACAAGGATCCCGAAAGAAA 59.926 43.478 8.55 0.00 37.71 2.52
4020 13933 2.642807 AGGAACAAGGATCCCGAAAGAA 59.357 45.455 8.55 0.00 37.71 2.52
4021 13934 2.266279 AGGAACAAGGATCCCGAAAGA 58.734 47.619 8.55 0.00 37.71 2.52
4022 13935 2.789409 AGGAACAAGGATCCCGAAAG 57.211 50.000 8.55 0.00 37.71 2.62
4023 13936 3.521937 ACATAGGAACAAGGATCCCGAAA 59.478 43.478 8.55 0.00 37.71 3.46
4024 13937 3.112263 ACATAGGAACAAGGATCCCGAA 58.888 45.455 8.55 0.00 37.71 4.30
4025 13938 2.434336 CACATAGGAACAAGGATCCCGA 59.566 50.000 8.55 0.00 37.71 5.14
4026 13939 2.170607 ACACATAGGAACAAGGATCCCG 59.829 50.000 8.55 2.15 37.71 5.14
4027 13940 3.933861 ACACATAGGAACAAGGATCCC 57.066 47.619 8.55 0.00 37.71 3.85
4028 13941 5.946377 AGAAAACACATAGGAACAAGGATCC 59.054 40.000 2.48 2.48 37.22 3.36
4029 13942 8.616076 CATAGAAAACACATAGGAACAAGGATC 58.384 37.037 0.00 0.00 0.00 3.36
4030 13943 8.328758 TCATAGAAAACACATAGGAACAAGGAT 58.671 33.333 0.00 0.00 0.00 3.24
4031 13944 7.685481 TCATAGAAAACACATAGGAACAAGGA 58.315 34.615 0.00 0.00 0.00 3.36
4032 13945 7.921786 TCATAGAAAACACATAGGAACAAGG 57.078 36.000 0.00 0.00 0.00 3.61
4036 13949 9.788960 GGATTTTCATAGAAAACACATAGGAAC 57.211 33.333 7.03 0.00 0.00 3.62
4037 13950 9.753674 AGGATTTTCATAGAAAACACATAGGAA 57.246 29.630 7.03 0.00 0.00 3.36
4038 13951 9.396022 GAGGATTTTCATAGAAAACACATAGGA 57.604 33.333 7.03 0.00 0.00 2.94
4039 13952 8.624776 GGAGGATTTTCATAGAAAACACATAGG 58.375 37.037 7.03 0.00 0.00 2.57
4040 13953 9.177608 TGGAGGATTTTCATAGAAAACACATAG 57.822 33.333 7.03 0.00 0.00 2.23
4041 13954 9.527157 TTGGAGGATTTTCATAGAAAACACATA 57.473 29.630 7.03 0.00 0.00 2.29
4042 13955 8.421249 TTGGAGGATTTTCATAGAAAACACAT 57.579 30.769 7.03 3.41 0.00 3.21
4043 13956 7.831691 TTGGAGGATTTTCATAGAAAACACA 57.168 32.000 7.03 1.20 0.00 3.72
4044 13957 7.598869 GGTTTGGAGGATTTTCATAGAAAACAC 59.401 37.037 7.03 4.10 0.00 3.32
4045 13958 7.523052 CGGTTTGGAGGATTTTCATAGAAAACA 60.523 37.037 7.03 0.00 0.00 2.83
4046 13959 6.806739 CGGTTTGGAGGATTTTCATAGAAAAC 59.193 38.462 7.03 2.78 0.00 2.43
4047 13960 6.717540 TCGGTTTGGAGGATTTTCATAGAAAA 59.282 34.615 7.30 7.30 0.00 2.29
4048 13961 6.242396 TCGGTTTGGAGGATTTTCATAGAAA 58.758 36.000 0.00 0.00 0.00 2.52
4049 13962 5.811190 TCGGTTTGGAGGATTTTCATAGAA 58.189 37.500 0.00 0.00 0.00 2.10
4050 13963 5.429681 TCGGTTTGGAGGATTTTCATAGA 57.570 39.130 0.00 0.00 0.00 1.98
4051 13964 6.699575 ATTCGGTTTGGAGGATTTTCATAG 57.300 37.500 0.00 0.00 0.00 2.23
4052 13965 6.770785 CCTATTCGGTTTGGAGGATTTTCATA 59.229 38.462 0.00 0.00 0.00 2.15
4053 13966 5.594317 CCTATTCGGTTTGGAGGATTTTCAT 59.406 40.000 0.00 0.00 0.00 2.57
4054 13967 4.947388 CCTATTCGGTTTGGAGGATTTTCA 59.053 41.667 0.00 0.00 0.00 2.69
4055 13968 4.202020 GCCTATTCGGTTTGGAGGATTTTC 60.202 45.833 0.00 0.00 34.25 2.29
4056 13969 3.699538 GCCTATTCGGTTTGGAGGATTTT 59.300 43.478 0.00 0.00 34.25 1.82
4057 13970 3.288092 GCCTATTCGGTTTGGAGGATTT 58.712 45.455 0.00 0.00 34.25 2.17
4058 13971 2.422945 GGCCTATTCGGTTTGGAGGATT 60.423 50.000 0.00 0.00 34.25 3.01
4059 13972 1.143073 GGCCTATTCGGTTTGGAGGAT 59.857 52.381 0.00 0.00 34.25 3.24
4060 13973 0.544697 GGCCTATTCGGTTTGGAGGA 59.455 55.000 0.00 0.00 34.25 3.71
4061 13974 0.465642 GGGCCTATTCGGTTTGGAGG 60.466 60.000 0.84 0.00 34.25 4.30
4062 13975 0.546598 AGGGCCTATTCGGTTTGGAG 59.453 55.000 2.82 0.00 34.25 3.86
4063 13976 1.882308 TAGGGCCTATTCGGTTTGGA 58.118 50.000 9.81 0.00 34.25 3.53
4064 13977 2.092592 ACTTAGGGCCTATTCGGTTTGG 60.093 50.000 15.37 0.00 34.25 3.28
4065 13978 3.277142 ACTTAGGGCCTATTCGGTTTG 57.723 47.619 15.37 0.69 34.25 2.93
4066 13979 4.225717 TGTAACTTAGGGCCTATTCGGTTT 59.774 41.667 15.37 4.36 34.25 3.27
4067 13980 3.776417 TGTAACTTAGGGCCTATTCGGTT 59.224 43.478 15.37 17.46 34.25 4.44
4068 13981 3.133542 GTGTAACTTAGGGCCTATTCGGT 59.866 47.826 15.37 7.42 34.25 4.69
4069 13982 3.493873 GGTGTAACTTAGGGCCTATTCGG 60.494 52.174 15.37 7.82 36.74 4.30
4070 13983 3.387050 AGGTGTAACTTAGGGCCTATTCG 59.613 47.826 15.37 8.66 36.74 3.34
4071 13984 4.163649 ACAGGTGTAACTTAGGGCCTATTC 59.836 45.833 15.37 0.00 36.74 1.75
4072 13985 4.109320 ACAGGTGTAACTTAGGGCCTATT 58.891 43.478 15.37 9.39 36.74 1.73
4073 13986 3.732595 ACAGGTGTAACTTAGGGCCTAT 58.267 45.455 15.37 1.75 36.74 2.57
4074 13987 3.194904 ACAGGTGTAACTTAGGGCCTA 57.805 47.619 9.81 9.81 36.74 3.93
4075 13988 2.040342 ACAGGTGTAACTTAGGGCCT 57.960 50.000 12.58 12.58 36.74 5.19
4076 13989 4.080751 TGAATACAGGTGTAACTTAGGGCC 60.081 45.833 0.00 0.00 36.74 5.80
4077 13990 5.093849 TGAATACAGGTGTAACTTAGGGC 57.906 43.478 0.00 0.00 36.74 5.19
4078 13991 9.106070 GTAATTGAATACAGGTGTAACTTAGGG 57.894 37.037 0.00 0.00 36.74 3.53
4079 13992 9.661563 TGTAATTGAATACAGGTGTAACTTAGG 57.338 33.333 0.00 0.00 31.51 2.69
4082 13995 8.879759 CGATGTAATTGAATACAGGTGTAACTT 58.120 33.333 0.00 0.00 39.04 2.66
4083 13996 8.255206 TCGATGTAATTGAATACAGGTGTAACT 58.745 33.333 0.00 0.00 39.04 2.24
4134 14047 3.181458 GGACCGCTATTGGACTATTGGAA 60.181 47.826 0.00 0.00 0.00 3.53
4146 14059 1.746517 CGCCCTTAGGACCGCTATT 59.253 57.895 0.00 0.00 33.47 1.73
4171 14084 1.234821 TGGGCTGCAAAACGACTAAG 58.765 50.000 0.50 0.00 0.00 2.18
4174 14087 0.102300 GTTTGGGCTGCAAAACGACT 59.898 50.000 12.44 0.00 0.00 4.18
4196 14109 6.583912 ATTTTCGATGTGTATGTTCTACGG 57.416 37.500 0.00 0.00 0.00 4.02
4197 14110 7.646526 TCCTATTTTCGATGTGTATGTTCTACG 59.353 37.037 0.00 0.00 0.00 3.51
4198 14111 8.867112 TCCTATTTTCGATGTGTATGTTCTAC 57.133 34.615 0.00 0.00 0.00 2.59
4213 14126 7.026631 TGCAAGATAACCAATCCTATTTTCG 57.973 36.000 0.00 0.00 34.90 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.