Multiple sequence alignment - TraesCS3B01G179900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G179900 chr3B 100.000 4187 0 0 1 4187 187799820 187804006 0.000000e+00 7733
1 TraesCS3B01G179900 chr3A 91.844 3985 183 68 303 4187 144148936 144152878 0.000000e+00 5428
2 TraesCS3B01G179900 chr3D 92.653 2627 102 43 747 3306 131349072 131351674 0.000000e+00 3698
3 TraesCS3B01G179900 chr3D 92.991 799 35 11 3394 4187 131351738 131352520 0.000000e+00 1146
4 TraesCS3B01G179900 chr3D 88.503 461 21 14 303 737 131347988 131348442 2.870000e-146 529
5 TraesCS3B01G179900 chr6A 94.758 248 12 1 1 247 459604761 459605008 6.570000e-103 385
6 TraesCS3B01G179900 chr5A 93.878 245 14 1 1 245 34694373 34694616 6.610000e-98 368
7 TraesCS3B01G179900 chr1A 93.548 248 14 2 1 246 419026965 419027212 6.610000e-98 368
8 TraesCS3B01G179900 chr7D 90.800 250 19 4 1 248 587566099 587565852 8.680000e-87 331
9 TraesCS3B01G179900 chr2B 89.069 247 11 2 1 246 772391404 772391173 4.090000e-75 292
10 TraesCS3B01G179900 chr2B 87.449 247 14 3 1 245 392528998 392529229 6.900000e-68 268
11 TraesCS3B01G179900 chr6B 88.306 248 13 2 1 247 599805845 599805613 2.460000e-72 283
12 TraesCS3B01G179900 chr5B 88.259 247 13 2 1 246 369608259 369608490 8.860000e-72 281
13 TraesCS3B01G179900 chr6D 90.233 215 19 2 4 217 25815325 25815112 3.190000e-71 279
14 TraesCS3B01G179900 chr2D 87.097 248 15 3 1 247 378357453 378357222 8.930000e-67 265


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G179900 chr3B 187799820 187804006 4186 False 7733 7733 100.000000 1 4187 1 chr3B.!!$F1 4186
1 TraesCS3B01G179900 chr3A 144148936 144152878 3942 False 5428 5428 91.844000 303 4187 1 chr3A.!!$F1 3884
2 TraesCS3B01G179900 chr3D 131347988 131352520 4532 False 1791 3698 91.382333 303 4187 3 chr3D.!!$F1 3884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.034896 ACGTTGATTTGCTCCGTCCT 59.965 50.0 0.00 0.0 0.0 3.85 F
739 771 0.035152 AATTCAGGGATGCGTGCTCA 60.035 50.0 1.55 0.0 0.0 4.26 F
920 1600 0.662619 TGCGCTTCACTTGGTTTCAG 59.337 50.0 9.73 0.0 0.0 3.02 F
2429 3162 0.746204 TGCAGCAAGGTGTTCGACAA 60.746 50.0 0.00 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1153 1847 0.535780 TGTGCAGGCAAGAACTGAGG 60.536 55.000 0.0 0.0 38.20 3.86 R
2397 3130 1.242665 TGCTGCATTTCGCCATGTGA 61.243 50.000 0.0 0.0 41.33 3.58 R
2607 3340 1.302511 GGTGGCGTTGTCCATGTCT 60.303 57.895 0.0 0.0 38.57 3.41 R
3889 4693 0.034896 CCAGCGGTCAGGTAGTGTTT 59.965 55.000 0.0 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.660938 GCGCTTCAAGGTGGGGGT 62.661 66.667 0.00 0.00 0.00 4.95
18 19 3.074281 CGCTTCAAGGTGGGGGTA 58.926 61.111 0.00 0.00 0.00 3.69
19 20 1.376812 CGCTTCAAGGTGGGGGTAC 60.377 63.158 0.00 0.00 0.00 3.34
20 21 1.376812 GCTTCAAGGTGGGGGTACG 60.377 63.158 0.00 0.00 0.00 3.67
21 22 2.063774 CTTCAAGGTGGGGGTACGT 58.936 57.895 0.00 0.00 0.00 3.57
22 23 0.399075 CTTCAAGGTGGGGGTACGTT 59.601 55.000 0.00 0.00 0.00 3.99
23 24 0.108963 TTCAAGGTGGGGGTACGTTG 59.891 55.000 0.00 0.00 43.86 4.10
24 25 0.763604 TCAAGGTGGGGGTACGTTGA 60.764 55.000 9.21 9.21 46.81 3.18
25 26 0.326927 CAAGGTGGGGGTACGTTGAT 59.673 55.000 0.00 0.00 44.75 2.57
26 27 1.069775 AAGGTGGGGGTACGTTGATT 58.930 50.000 0.00 0.00 0.00 2.57
27 28 1.069775 AGGTGGGGGTACGTTGATTT 58.930 50.000 0.00 0.00 0.00 2.17
28 29 1.170442 GGTGGGGGTACGTTGATTTG 58.830 55.000 0.00 0.00 0.00 2.32
29 30 0.524414 GTGGGGGTACGTTGATTTGC 59.476 55.000 0.00 0.00 0.00 3.68
30 31 0.402504 TGGGGGTACGTTGATTTGCT 59.597 50.000 0.00 0.00 0.00 3.91
31 32 1.092348 GGGGGTACGTTGATTTGCTC 58.908 55.000 0.00 0.00 0.00 4.26
32 33 1.092348 GGGGTACGTTGATTTGCTCC 58.908 55.000 0.00 0.00 0.00 4.70
33 34 0.725117 GGGTACGTTGATTTGCTCCG 59.275 55.000 0.00 0.00 0.00 4.63
34 35 1.435577 GGTACGTTGATTTGCTCCGT 58.564 50.000 0.00 0.00 35.68 4.69
35 36 1.392510 GGTACGTTGATTTGCTCCGTC 59.607 52.381 0.00 0.00 33.32 4.79
36 37 1.392510 GTACGTTGATTTGCTCCGTCC 59.607 52.381 0.00 0.00 33.32 4.79
37 38 0.034896 ACGTTGATTTGCTCCGTCCT 59.965 50.000 0.00 0.00 0.00 3.85
38 39 0.443869 CGTTGATTTGCTCCGTCCTG 59.556 55.000 0.00 0.00 0.00 3.86
39 40 1.808411 GTTGATTTGCTCCGTCCTGA 58.192 50.000 0.00 0.00 0.00 3.86
40 41 2.359900 GTTGATTTGCTCCGTCCTGAT 58.640 47.619 0.00 0.00 0.00 2.90
41 42 2.028420 TGATTTGCTCCGTCCTGATG 57.972 50.000 0.00 0.00 0.00 3.07
42 43 1.303309 GATTTGCTCCGTCCTGATGG 58.697 55.000 0.00 0.00 38.85 3.51
43 44 0.749454 ATTTGCTCCGTCCTGATGGC 60.749 55.000 0.24 0.00 37.40 4.40
44 45 2.123248 TTTGCTCCGTCCTGATGGCA 62.123 55.000 0.24 0.00 37.40 4.92
45 46 1.913951 TTGCTCCGTCCTGATGGCAT 61.914 55.000 0.00 0.00 37.40 4.40
46 47 1.890979 GCTCCGTCCTGATGGCATG 60.891 63.158 3.81 0.00 37.40 4.06
47 48 1.227764 CTCCGTCCTGATGGCATGG 60.228 63.158 3.81 0.00 37.40 3.66
48 49 1.976132 CTCCGTCCTGATGGCATGGT 61.976 60.000 3.81 0.00 37.40 3.55
49 50 1.524621 CCGTCCTGATGGCATGGTC 60.525 63.158 3.81 0.00 0.00 4.02
50 51 1.884464 CGTCCTGATGGCATGGTCG 60.884 63.158 3.81 6.92 0.00 4.79
51 52 1.221840 GTCCTGATGGCATGGTCGT 59.778 57.895 3.81 0.00 0.00 4.34
52 53 1.091771 GTCCTGATGGCATGGTCGTG 61.092 60.000 3.81 0.00 0.00 4.35
53 54 1.078214 CCTGATGGCATGGTCGTGT 60.078 57.895 3.81 0.00 0.00 4.49
54 55 1.371337 CCTGATGGCATGGTCGTGTG 61.371 60.000 3.81 0.00 0.00 3.82
55 56 0.391528 CTGATGGCATGGTCGTGTGA 60.392 55.000 3.81 0.00 0.00 3.58
56 57 0.673333 TGATGGCATGGTCGTGTGAC 60.673 55.000 3.81 0.00 44.72 3.67
64 65 3.319904 GTCGTGTGACACTGGTGC 58.680 61.111 14.42 0.00 44.82 5.01
65 66 2.108157 TCGTGTGACACTGGTGCC 59.892 61.111 14.42 0.00 31.34 5.01
66 67 2.972505 CGTGTGACACTGGTGCCC 60.973 66.667 14.42 0.00 31.34 5.36
67 68 2.972505 GTGTGACACTGGTGCCCG 60.973 66.667 8.76 0.00 0.00 6.13
68 69 4.248842 TGTGACACTGGTGCCCGG 62.249 66.667 7.20 0.00 35.68 5.73
71 72 4.643387 GACACTGGTGCCCGGCTT 62.643 66.667 11.61 0.00 32.02 4.35
72 73 4.204028 ACACTGGTGCCCGGCTTT 62.204 61.111 11.61 0.00 32.02 3.51
73 74 3.673484 CACTGGTGCCCGGCTTTG 61.673 66.667 11.61 1.04 32.02 2.77
74 75 4.204028 ACTGGTGCCCGGCTTTGT 62.204 61.111 11.61 1.68 32.02 2.83
75 76 2.912025 CTGGTGCCCGGCTTTGTT 60.912 61.111 11.61 0.00 0.00 2.83
76 77 3.211564 CTGGTGCCCGGCTTTGTTG 62.212 63.158 11.61 0.00 0.00 3.33
77 78 3.989787 GGTGCCCGGCTTTGTTGG 61.990 66.667 11.61 0.00 0.00 3.77
78 79 3.223589 GTGCCCGGCTTTGTTGGT 61.224 61.111 11.61 0.00 0.00 3.67
79 80 3.222855 TGCCCGGCTTTGTTGGTG 61.223 61.111 11.61 0.00 0.00 4.17
80 81 2.909965 GCCCGGCTTTGTTGGTGA 60.910 61.111 0.71 0.00 0.00 4.02
81 82 3.039134 CCCGGCTTTGTTGGTGAC 58.961 61.111 0.00 0.00 0.00 3.67
82 83 2.637025 CCGGCTTTGTTGGTGACG 59.363 61.111 0.00 0.00 0.00 4.35
83 84 2.051345 CGGCTTTGTTGGTGACGC 60.051 61.111 0.00 0.00 0.00 5.19
84 85 2.051345 GGCTTTGTTGGTGACGCG 60.051 61.111 3.53 3.53 0.00 6.01
85 86 2.051345 GCTTTGTTGGTGACGCGG 60.051 61.111 12.47 0.00 0.00 6.46
86 87 2.051345 CTTTGTTGGTGACGCGGC 60.051 61.111 12.47 8.67 0.00 6.53
87 88 2.515057 TTTGTTGGTGACGCGGCT 60.515 55.556 15.80 0.00 0.00 5.52
88 89 2.058829 CTTTGTTGGTGACGCGGCTT 62.059 55.000 15.80 0.00 0.00 4.35
89 90 0.814410 TTTGTTGGTGACGCGGCTTA 60.814 50.000 15.80 0.00 0.00 3.09
90 91 1.225376 TTGTTGGTGACGCGGCTTAG 61.225 55.000 15.80 0.00 0.00 2.18
91 92 2.740826 TTGGTGACGCGGCTTAGC 60.741 61.111 15.80 3.42 0.00 3.09
92 93 3.234630 TTGGTGACGCGGCTTAGCT 62.235 57.895 15.80 0.00 34.40 3.32
93 94 3.188786 GGTGACGCGGCTTAGCTG 61.189 66.667 15.80 8.96 38.08 4.24
101 102 3.460648 CGGCTTAGCTGCTTTAGGT 57.539 52.632 7.79 0.00 40.87 3.08
102 103 1.291132 CGGCTTAGCTGCTTTAGGTC 58.709 55.000 7.79 0.00 38.31 3.85
103 104 1.134670 CGGCTTAGCTGCTTTAGGTCT 60.135 52.381 7.79 0.00 38.31 3.85
104 105 2.678190 CGGCTTAGCTGCTTTAGGTCTT 60.678 50.000 7.79 0.00 38.31 3.01
105 106 2.680339 GGCTTAGCTGCTTTAGGTCTTG 59.320 50.000 7.79 0.00 38.31 3.02
106 107 3.339141 GCTTAGCTGCTTTAGGTCTTGT 58.661 45.455 7.79 0.00 38.31 3.16
107 108 3.753797 GCTTAGCTGCTTTAGGTCTTGTT 59.246 43.478 7.79 0.00 38.31 2.83
108 109 4.216472 GCTTAGCTGCTTTAGGTCTTGTTT 59.784 41.667 7.79 0.00 38.31 2.83
109 110 5.617973 GCTTAGCTGCTTTAGGTCTTGTTTC 60.618 44.000 7.79 0.00 38.31 2.78
110 111 4.092116 AGCTGCTTTAGGTCTTGTTTCT 57.908 40.909 0.00 0.00 29.16 2.52
111 112 4.464947 AGCTGCTTTAGGTCTTGTTTCTT 58.535 39.130 0.00 0.00 29.16 2.52
112 113 4.889995 AGCTGCTTTAGGTCTTGTTTCTTT 59.110 37.500 0.00 0.00 29.16 2.52
113 114 5.009110 AGCTGCTTTAGGTCTTGTTTCTTTC 59.991 40.000 0.00 0.00 29.16 2.62
114 115 5.763088 CTGCTTTAGGTCTTGTTTCTTTCC 58.237 41.667 0.00 0.00 0.00 3.13
115 116 4.583073 TGCTTTAGGTCTTGTTTCTTTCCC 59.417 41.667 0.00 0.00 0.00 3.97
116 117 4.827835 GCTTTAGGTCTTGTTTCTTTCCCT 59.172 41.667 0.00 0.00 0.00 4.20
117 118 5.302059 GCTTTAGGTCTTGTTTCTTTCCCTT 59.698 40.000 0.00 0.00 0.00 3.95
118 119 6.183360 GCTTTAGGTCTTGTTTCTTTCCCTTT 60.183 38.462 0.00 0.00 0.00 3.11
119 120 6.954487 TTAGGTCTTGTTTCTTTCCCTTTC 57.046 37.500 0.00 0.00 0.00 2.62
120 121 4.867086 AGGTCTTGTTTCTTTCCCTTTCA 58.133 39.130 0.00 0.00 0.00 2.69
121 122 5.458595 AGGTCTTGTTTCTTTCCCTTTCAT 58.541 37.500 0.00 0.00 0.00 2.57
122 123 5.302823 AGGTCTTGTTTCTTTCCCTTTCATG 59.697 40.000 0.00 0.00 0.00 3.07
123 124 5.509670 GGTCTTGTTTCTTTCCCTTTCATGG 60.510 44.000 0.00 0.00 0.00 3.66
124 125 4.039124 TCTTGTTTCTTTCCCTTTCATGGC 59.961 41.667 0.00 0.00 0.00 4.40
125 126 3.575805 TGTTTCTTTCCCTTTCATGGCT 58.424 40.909 0.00 0.00 0.00 4.75
126 127 3.321682 TGTTTCTTTCCCTTTCATGGCTG 59.678 43.478 0.00 0.00 0.00 4.85
127 128 2.220653 TCTTTCCCTTTCATGGCTGG 57.779 50.000 0.00 0.00 0.00 4.85
128 129 1.710244 TCTTTCCCTTTCATGGCTGGA 59.290 47.619 0.00 0.00 0.00 3.86
129 130 2.097825 CTTTCCCTTTCATGGCTGGAG 58.902 52.381 0.00 0.00 0.00 3.86
130 131 1.075601 TTCCCTTTCATGGCTGGAGT 58.924 50.000 0.00 0.00 0.00 3.85
131 132 1.075601 TCCCTTTCATGGCTGGAGTT 58.924 50.000 0.00 0.00 0.00 3.01
132 133 1.428912 TCCCTTTCATGGCTGGAGTTT 59.571 47.619 0.00 0.00 0.00 2.66
133 134 2.158325 TCCCTTTCATGGCTGGAGTTTT 60.158 45.455 0.00 0.00 0.00 2.43
134 135 3.075283 TCCCTTTCATGGCTGGAGTTTTA 59.925 43.478 0.00 0.00 0.00 1.52
135 136 3.445096 CCCTTTCATGGCTGGAGTTTTAG 59.555 47.826 0.00 0.00 0.00 1.85
136 137 3.445096 CCTTTCATGGCTGGAGTTTTAGG 59.555 47.826 0.00 0.00 0.00 2.69
137 138 2.128771 TCATGGCTGGAGTTTTAGGC 57.871 50.000 0.00 0.00 39.67 3.93
138 139 1.635487 TCATGGCTGGAGTTTTAGGCT 59.365 47.619 0.00 0.00 39.90 4.58
139 140 2.843730 TCATGGCTGGAGTTTTAGGCTA 59.156 45.455 0.00 0.00 39.90 3.93
140 141 3.118261 TCATGGCTGGAGTTTTAGGCTAG 60.118 47.826 0.00 0.00 39.90 3.42
141 142 2.266279 TGGCTGGAGTTTTAGGCTAGT 58.734 47.619 0.00 0.00 39.90 2.57
142 143 3.446968 TGGCTGGAGTTTTAGGCTAGTA 58.553 45.455 0.00 0.00 39.90 1.82
143 144 3.451178 TGGCTGGAGTTTTAGGCTAGTAG 59.549 47.826 0.00 0.00 39.90 2.57
144 145 3.705072 GGCTGGAGTTTTAGGCTAGTAGA 59.295 47.826 0.00 0.00 36.63 2.59
145 146 4.202172 GGCTGGAGTTTTAGGCTAGTAGAG 60.202 50.000 0.00 0.00 36.63 2.43
146 147 4.403113 GCTGGAGTTTTAGGCTAGTAGAGT 59.597 45.833 0.00 0.00 0.00 3.24
147 148 5.680151 GCTGGAGTTTTAGGCTAGTAGAGTG 60.680 48.000 0.00 0.00 0.00 3.51
148 149 5.331069 TGGAGTTTTAGGCTAGTAGAGTGT 58.669 41.667 0.00 0.00 0.00 3.55
149 150 5.185249 TGGAGTTTTAGGCTAGTAGAGTGTG 59.815 44.000 0.00 0.00 0.00 3.82
150 151 5.185442 GGAGTTTTAGGCTAGTAGAGTGTGT 59.815 44.000 0.00 0.00 0.00 3.72
151 152 6.026947 AGTTTTAGGCTAGTAGAGTGTGTG 57.973 41.667 0.00 0.00 0.00 3.82
152 153 4.451629 TTTAGGCTAGTAGAGTGTGTGC 57.548 45.455 0.00 0.00 0.00 4.57
153 154 1.187087 AGGCTAGTAGAGTGTGTGCC 58.813 55.000 0.00 0.00 39.19 5.01
154 155 0.179134 GGCTAGTAGAGTGTGTGCCG 60.179 60.000 0.00 0.00 0.00 5.69
155 156 0.526662 GCTAGTAGAGTGTGTGCCGT 59.473 55.000 0.00 0.00 0.00 5.68
156 157 1.732732 GCTAGTAGAGTGTGTGCCGTG 60.733 57.143 0.00 0.00 0.00 4.94
157 158 1.540267 CTAGTAGAGTGTGTGCCGTGT 59.460 52.381 0.00 0.00 0.00 4.49
158 159 0.750850 AGTAGAGTGTGTGCCGTGTT 59.249 50.000 0.00 0.00 0.00 3.32
159 160 0.859232 GTAGAGTGTGTGCCGTGTTG 59.141 55.000 0.00 0.00 0.00 3.33
160 161 0.462375 TAGAGTGTGTGCCGTGTTGT 59.538 50.000 0.00 0.00 0.00 3.32
161 162 0.462375 AGAGTGTGTGCCGTGTTGTA 59.538 50.000 0.00 0.00 0.00 2.41
162 163 1.070134 AGAGTGTGTGCCGTGTTGTAT 59.930 47.619 0.00 0.00 0.00 2.29
163 164 1.459592 GAGTGTGTGCCGTGTTGTATC 59.540 52.381 0.00 0.00 0.00 2.24
164 165 0.515564 GTGTGTGCCGTGTTGTATCC 59.484 55.000 0.00 0.00 0.00 2.59
165 166 0.604243 TGTGTGCCGTGTTGTATCCC 60.604 55.000 0.00 0.00 0.00 3.85
166 167 0.321298 GTGTGCCGTGTTGTATCCCT 60.321 55.000 0.00 0.00 0.00 4.20
167 168 0.036765 TGTGCCGTGTTGTATCCCTC 60.037 55.000 0.00 0.00 0.00 4.30
168 169 0.249398 GTGCCGTGTTGTATCCCTCT 59.751 55.000 0.00 0.00 0.00 3.69
169 170 0.981183 TGCCGTGTTGTATCCCTCTT 59.019 50.000 0.00 0.00 0.00 2.85
170 171 1.066430 TGCCGTGTTGTATCCCTCTTC 60.066 52.381 0.00 0.00 0.00 2.87
171 172 1.742750 GCCGTGTTGTATCCCTCTTCC 60.743 57.143 0.00 0.00 0.00 3.46
172 173 1.831736 CCGTGTTGTATCCCTCTTCCT 59.168 52.381 0.00 0.00 0.00 3.36
173 174 2.159085 CCGTGTTGTATCCCTCTTCCTC 60.159 54.545 0.00 0.00 0.00 3.71
174 175 2.159085 CGTGTTGTATCCCTCTTCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
175 176 2.170817 GTGTTGTATCCCTCTTCCTCCC 59.829 54.545 0.00 0.00 0.00 4.30
176 177 1.769465 GTTGTATCCCTCTTCCTCCCC 59.231 57.143 0.00 0.00 0.00 4.81
177 178 1.330155 TGTATCCCTCTTCCTCCCCT 58.670 55.000 0.00 0.00 0.00 4.79
178 179 1.220750 TGTATCCCTCTTCCTCCCCTC 59.779 57.143 0.00 0.00 0.00 4.30
179 180 1.505977 GTATCCCTCTTCCTCCCCTCT 59.494 57.143 0.00 0.00 0.00 3.69
180 181 1.031112 ATCCCTCTTCCTCCCCTCTT 58.969 55.000 0.00 0.00 0.00 2.85
181 182 0.043334 TCCCTCTTCCTCCCCTCTTG 59.957 60.000 0.00 0.00 0.00 3.02
182 183 0.252927 CCCTCTTCCTCCCCTCTTGT 60.253 60.000 0.00 0.00 0.00 3.16
183 184 1.662686 CCTCTTCCTCCCCTCTTGTT 58.337 55.000 0.00 0.00 0.00 2.83
184 185 2.562214 CCCTCTTCCTCCCCTCTTGTTA 60.562 54.545 0.00 0.00 0.00 2.41
185 186 2.502130 CCTCTTCCTCCCCTCTTGTTAC 59.498 54.545 0.00 0.00 0.00 2.50
186 187 3.445987 CTCTTCCTCCCCTCTTGTTACT 58.554 50.000 0.00 0.00 0.00 2.24
187 188 3.841255 CTCTTCCTCCCCTCTTGTTACTT 59.159 47.826 0.00 0.00 0.00 2.24
188 189 4.240323 TCTTCCTCCCCTCTTGTTACTTT 58.760 43.478 0.00 0.00 0.00 2.66
189 190 4.041691 TCTTCCTCCCCTCTTGTTACTTTG 59.958 45.833 0.00 0.00 0.00 2.77
190 191 3.323775 TCCTCCCCTCTTGTTACTTTGT 58.676 45.455 0.00 0.00 0.00 2.83
191 192 3.720002 TCCTCCCCTCTTGTTACTTTGTT 59.280 43.478 0.00 0.00 0.00 2.83
192 193 4.072839 CCTCCCCTCTTGTTACTTTGTTC 58.927 47.826 0.00 0.00 0.00 3.18
193 194 4.202472 CCTCCCCTCTTGTTACTTTGTTCT 60.202 45.833 0.00 0.00 0.00 3.01
194 195 4.969484 TCCCCTCTTGTTACTTTGTTCTC 58.031 43.478 0.00 0.00 0.00 2.87
195 196 4.658901 TCCCCTCTTGTTACTTTGTTCTCT 59.341 41.667 0.00 0.00 0.00 3.10
196 197 5.132144 TCCCCTCTTGTTACTTTGTTCTCTT 59.868 40.000 0.00 0.00 0.00 2.85
197 198 5.470437 CCCCTCTTGTTACTTTGTTCTCTTC 59.530 44.000 0.00 0.00 0.00 2.87
198 199 6.292150 CCCTCTTGTTACTTTGTTCTCTTCT 58.708 40.000 0.00 0.00 0.00 2.85
199 200 7.442656 CCCTCTTGTTACTTTGTTCTCTTCTA 58.557 38.462 0.00 0.00 0.00 2.10
200 201 7.385478 CCCTCTTGTTACTTTGTTCTCTTCTAC 59.615 40.741 0.00 0.00 0.00 2.59
201 202 7.385478 CCTCTTGTTACTTTGTTCTCTTCTACC 59.615 40.741 0.00 0.00 0.00 3.18
202 203 8.019656 TCTTGTTACTTTGTTCTCTTCTACCT 57.980 34.615 0.00 0.00 0.00 3.08
203 204 9.139734 TCTTGTTACTTTGTTCTCTTCTACCTA 57.860 33.333 0.00 0.00 0.00 3.08
204 205 9.930693 CTTGTTACTTTGTTCTCTTCTACCTAT 57.069 33.333 0.00 0.00 0.00 2.57
205 206 9.924650 TTGTTACTTTGTTCTCTTCTACCTATC 57.075 33.333 0.00 0.00 0.00 2.08
206 207 9.085645 TGTTACTTTGTTCTCTTCTACCTATCA 57.914 33.333 0.00 0.00 0.00 2.15
207 208 9.924650 GTTACTTTGTTCTCTTCTACCTATCAA 57.075 33.333 0.00 0.00 0.00 2.57
210 211 8.816894 ACTTTGTTCTCTTCTACCTATCAATGA 58.183 33.333 0.00 0.00 0.00 2.57
211 212 9.658799 CTTTGTTCTCTTCTACCTATCAATGAA 57.341 33.333 0.00 0.00 0.00 2.57
214 215 9.658799 TGTTCTCTTCTACCTATCAATGAAAAG 57.341 33.333 0.00 0.00 0.00 2.27
215 216 9.877178 GTTCTCTTCTACCTATCAATGAAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
219 220 9.967346 TCTTCTACCTATCAATGAAAAGATACG 57.033 33.333 0.00 0.00 0.00 3.06
220 221 8.589335 TTCTACCTATCAATGAAAAGATACGC 57.411 34.615 0.00 0.00 0.00 4.42
221 222 7.722363 TCTACCTATCAATGAAAAGATACGCA 58.278 34.615 0.00 0.00 0.00 5.24
222 223 8.201464 TCTACCTATCAATGAAAAGATACGCAA 58.799 33.333 0.00 0.00 0.00 4.85
224 225 6.138761 CCTATCAATGAAAAGATACGCAAGC 58.861 40.000 0.00 0.00 45.62 4.01
225 226 5.824904 ATCAATGAAAAGATACGCAAGCT 57.175 34.783 0.00 0.00 45.62 3.74
226 227 5.627499 TCAATGAAAAGATACGCAAGCTT 57.373 34.783 0.00 0.00 45.62 3.74
227 228 6.012658 TCAATGAAAAGATACGCAAGCTTT 57.987 33.333 0.00 0.00 45.62 3.51
228 229 5.858049 TCAATGAAAAGATACGCAAGCTTTG 59.142 36.000 0.00 0.00 45.62 2.77
229 230 4.829064 TGAAAAGATACGCAAGCTTTGT 57.171 36.364 0.00 0.58 45.62 2.83
230 231 4.536065 TGAAAAGATACGCAAGCTTTGTG 58.464 39.130 10.62 9.02 46.24 3.33
237 238 2.594529 CGCAAGCTTTGTGTATTCGT 57.405 45.000 0.00 0.00 36.45 3.85
238 239 2.233355 CGCAAGCTTTGTGTATTCGTG 58.767 47.619 0.00 0.00 36.45 4.35
239 240 2.096466 CGCAAGCTTTGTGTATTCGTGA 60.096 45.455 0.00 0.00 36.45 4.35
240 241 3.605922 CGCAAGCTTTGTGTATTCGTGAA 60.606 43.478 0.00 0.00 36.45 3.18
241 242 4.286910 GCAAGCTTTGTGTATTCGTGAAA 58.713 39.130 0.00 0.00 0.00 2.69
242 243 4.737765 GCAAGCTTTGTGTATTCGTGAAAA 59.262 37.500 0.00 0.00 0.00 2.29
243 244 5.231147 GCAAGCTTTGTGTATTCGTGAAAAA 59.769 36.000 0.00 0.00 0.00 1.94
277 278 9.713740 CTAACGTTAAGTCGTATATATGATCCC 57.286 37.037 9.68 0.00 43.38 3.85
278 279 7.934855 ACGTTAAGTCGTATATATGATCCCT 57.065 36.000 7.90 0.00 42.35 4.20
279 280 7.759465 ACGTTAAGTCGTATATATGATCCCTG 58.241 38.462 7.90 1.06 42.35 4.45
280 281 7.148120 ACGTTAAGTCGTATATATGATCCCTGG 60.148 40.741 7.90 0.00 42.35 4.45
281 282 7.490000 GTTAAGTCGTATATATGATCCCTGGG 58.510 42.308 6.33 6.33 0.00 4.45
282 283 3.961408 AGTCGTATATATGATCCCTGGGC 59.039 47.826 8.22 0.00 0.00 5.36
283 284 3.704566 GTCGTATATATGATCCCTGGGCA 59.295 47.826 8.22 0.91 0.00 5.36
284 285 4.345257 GTCGTATATATGATCCCTGGGCAT 59.655 45.833 8.22 9.45 0.00 4.40
285 286 4.344968 TCGTATATATGATCCCTGGGCATG 59.655 45.833 8.22 0.00 0.00 4.06
286 287 4.344968 CGTATATATGATCCCTGGGCATGA 59.655 45.833 8.22 0.00 0.00 3.07
287 288 5.510349 CGTATATATGATCCCTGGGCATGAG 60.510 48.000 8.22 0.00 0.00 2.90
288 289 2.123018 TATGATCCCTGGGCATGAGT 57.877 50.000 8.22 0.00 0.00 3.41
289 290 0.769873 ATGATCCCTGGGCATGAGTC 59.230 55.000 8.22 0.00 0.00 3.36
290 291 1.348008 TGATCCCTGGGCATGAGTCC 61.348 60.000 8.22 0.00 41.04 3.85
291 292 2.061790 GATCCCTGGGCATGAGTCCC 62.062 65.000 8.22 0.00 39.40 4.46
297 298 4.408821 GGCATGAGTCCCACCGCA 62.409 66.667 0.00 0.00 0.00 5.69
298 299 2.821366 GCATGAGTCCCACCGCAG 60.821 66.667 0.00 0.00 0.00 5.18
391 392 4.223659 GGATAAAGAAAAACGAAGCGCAA 58.776 39.130 11.47 0.00 0.00 4.85
512 515 2.280797 TGCACGCTTGGACACTCC 60.281 61.111 0.00 0.00 36.96 3.85
531 535 2.167861 GCTCGGCGAATGAGGTGAC 61.168 63.158 12.13 0.00 33.99 3.67
576 589 0.385223 CTTGTGTTTCTGCTGCGAGC 60.385 55.000 0.00 1.70 42.82 5.03
599 612 4.635925 GCGCTAGCTAGAATCGCA 57.364 55.556 28.22 0.00 44.50 5.10
628 657 2.645163 TGTGTTTTGCTCAATTACGCG 58.355 42.857 3.53 3.53 0.00 6.01
635 664 1.429148 GCTCAATTACGCGGTGGAGG 61.429 60.000 12.47 0.00 0.00 4.30
690 719 2.363795 CGCCCTCCACCTCCAGTA 60.364 66.667 0.00 0.00 0.00 2.74
694 723 1.700042 CCCTCCACCTCCAGTATGCC 61.700 65.000 0.00 0.00 31.97 4.40
733 765 2.988493 CAACAACAAATTCAGGGATGCG 59.012 45.455 0.00 0.00 0.00 4.73
737 769 0.813184 CAAATTCAGGGATGCGTGCT 59.187 50.000 1.55 0.00 0.00 4.40
738 770 1.098050 AAATTCAGGGATGCGTGCTC 58.902 50.000 1.55 0.00 0.00 4.26
739 771 0.035152 AATTCAGGGATGCGTGCTCA 60.035 50.000 1.55 0.00 0.00 4.26
741 773 2.803155 TTCAGGGATGCGTGCTCACC 62.803 60.000 1.55 0.00 0.00 4.02
742 774 3.005539 AGGGATGCGTGCTCACCT 61.006 61.111 0.00 0.00 0.00 4.00
743 775 2.821366 GGGATGCGTGCTCACCTG 60.821 66.667 0.00 0.00 0.00 4.00
809 1472 7.275920 AGTGAGATAGATATGTGTGTTTTCCC 58.724 38.462 0.00 0.00 0.00 3.97
811 1474 8.421784 GTGAGATAGATATGTGTGTTTTCCCTA 58.578 37.037 0.00 0.00 0.00 3.53
840 1520 7.001674 TCCAACCCGCATTACTTCAATATTAT 58.998 34.615 0.00 0.00 0.00 1.28
841 1521 7.504238 TCCAACCCGCATTACTTCAATATTATT 59.496 33.333 0.00 0.00 0.00 1.40
842 1522 8.788806 CCAACCCGCATTACTTCAATATTATTA 58.211 33.333 0.00 0.00 0.00 0.98
843 1523 9.607285 CAACCCGCATTACTTCAATATTATTAC 57.393 33.333 0.00 0.00 0.00 1.89
883 1563 3.619038 GCAACACTGAATGTAGAGTAGGC 59.381 47.826 0.00 0.00 42.31 3.93
920 1600 0.662619 TGCGCTTCACTTGGTTTCAG 59.337 50.000 9.73 0.00 0.00 3.02
921 1601 0.944386 GCGCTTCACTTGGTTTCAGA 59.056 50.000 0.00 0.00 0.00 3.27
922 1602 1.333619 GCGCTTCACTTGGTTTCAGAA 59.666 47.619 0.00 0.00 0.00 3.02
923 1603 2.603173 GCGCTTCACTTGGTTTCAGAAG 60.603 50.000 0.00 0.00 38.88 2.85
924 1604 2.614057 CGCTTCACTTGGTTTCAGAAGT 59.386 45.455 0.00 0.00 38.30 3.01
1032 1715 1.739929 CATACAACTGACGCCGGCA 60.740 57.895 28.98 5.90 0.00 5.69
1121 1804 2.030401 GCACCGGATTGCACGTACA 61.030 57.895 9.46 0.00 42.49 2.90
1127 1818 3.752222 ACCGGATTGCACGTACAAAATAA 59.248 39.130 9.46 0.00 32.27 1.40
1153 1847 2.175878 ATGACAAGCTGTGACCAGAC 57.824 50.000 0.00 0.00 41.50 3.51
1173 1867 1.311859 CTCAGTTCTTGCCTGCACAA 58.688 50.000 0.00 0.00 0.00 3.33
1181 1875 0.874390 TTGCCTGCACAATTCGAGAC 59.126 50.000 0.00 0.00 0.00 3.36
1207 1905 3.020274 GGGGAAAGAAAGAGATCCTTGC 58.980 50.000 0.00 0.00 34.79 4.01
1217 1915 6.655003 AGAAAGAGATCCTTGCGTGAATTTTA 59.345 34.615 0.00 0.00 35.47 1.52
1227 1925 5.142635 TGCGTGAATTTTATGTGATCGAG 57.857 39.130 0.00 0.00 0.00 4.04
1229 1927 4.957967 GCGTGAATTTTATGTGATCGAGTG 59.042 41.667 0.00 0.00 0.00 3.51
1241 1943 1.798813 GATCGAGTGCTGTTTTCCGTT 59.201 47.619 0.00 0.00 0.00 4.44
1251 1953 5.517054 GTGCTGTTTTCCGTTATTTTTGTGA 59.483 36.000 0.00 0.00 0.00 3.58
1252 1954 6.200097 GTGCTGTTTTCCGTTATTTTTGTGAT 59.800 34.615 0.00 0.00 0.00 3.06
1266 1968 2.330440 TGTGATCATATTGCGCCTGT 57.670 45.000 4.18 0.00 0.00 4.00
1450 2155 1.424493 GCCTCATCGACGCCAAGAAG 61.424 60.000 0.00 0.00 0.00 2.85
1451 2156 1.424493 CCTCATCGACGCCAAGAAGC 61.424 60.000 0.00 0.00 0.00 3.86
1978 2683 2.768492 GCCCGACGTCGTCACCTAT 61.768 63.158 33.49 0.00 37.74 2.57
2108 2813 2.486663 ATCGTCGGCGGATACTGCA 61.487 57.895 10.62 0.00 37.75 4.41
2397 3130 4.400961 GCCTTCAGCTCGCTGGGT 62.401 66.667 17.93 0.00 43.75 4.51
2429 3162 0.746204 TGCAGCAAGGTGTTCGACAA 60.746 50.000 0.00 0.00 0.00 3.18
2623 3356 1.965930 GCAGACATGGACAACGCCA 60.966 57.895 0.00 0.00 43.23 5.69
2829 3562 1.079127 CGTCGGCCTGGTCAAGAAT 60.079 57.895 0.00 0.00 0.00 2.40
2926 3665 2.277120 GTCCCGACGACGACGATG 60.277 66.667 20.63 11.30 42.66 3.84
2936 3675 2.002963 GACGACGATGACAAGCTGCG 62.003 60.000 0.00 0.00 0.00 5.18
2937 3676 1.801512 CGACGATGACAAGCTGCGA 60.802 57.895 0.00 0.00 0.00 5.10
2968 3707 3.052082 CCAGTGAGCAGGCAACGG 61.052 66.667 0.00 0.00 46.39 4.44
3054 3793 2.749441 TTTGCATCATCGGCGCCA 60.749 55.556 28.98 14.46 0.00 5.69
3097 3839 2.202544 GTCAGCTCCGACTGCGAG 60.203 66.667 0.00 0.00 40.82 5.03
3099 3841 4.127040 CAGCTCCGACTGCGAGCT 62.127 66.667 6.51 6.51 45.24 4.09
3117 3859 0.313987 CTTCGGGGTTTTGCAGGAAC 59.686 55.000 6.51 6.51 0.00 3.62
3139 3881 3.650950 GGCAGAAGCAGGGTGGGA 61.651 66.667 0.00 0.00 44.61 4.37
3183 3925 3.557228 ATCAAGATGGTCTTCCTCAGC 57.443 47.619 0.00 0.00 33.78 4.26
3212 3954 1.340889 GGCCATTGTTTGCTGTTCAGA 59.659 47.619 0.00 0.00 0.00 3.27
3315 4083 4.452114 CACACATTGGTCTTCGATTCAGAA 59.548 41.667 0.00 0.00 0.00 3.02
3323 4091 4.170256 GTCTTCGATTCAGAAGTCTCACC 58.830 47.826 13.89 0.00 45.69 4.02
3324 4092 2.921634 TCGATTCAGAAGTCTCACCG 57.078 50.000 0.00 0.00 0.00 4.94
3337 4111 0.249868 CTCACCGTTCCACAGAGCAA 60.250 55.000 0.00 0.00 0.00 3.91
3488 4270 8.965172 CACGATCACAACCATTATAGTACTTAC 58.035 37.037 0.00 0.00 0.00 2.34
3489 4271 8.910944 ACGATCACAACCATTATAGTACTTACT 58.089 33.333 0.00 0.00 40.24 2.24
3490 4272 9.745880 CGATCACAACCATTATAGTACTTACTT 57.254 33.333 0.00 0.00 37.73 2.24
3708 4490 1.444250 GTCGGTGTTGGTGAGGACA 59.556 57.895 0.00 0.00 0.00 4.02
3798 4580 3.056749 TCTTCTTCGGCTGGTAGAACTTC 60.057 47.826 6.85 0.00 0.00 3.01
3807 4589 3.244249 GCTGGTAGAACTTCTCCAACTGT 60.244 47.826 0.00 0.00 0.00 3.55
3829 4617 3.714001 CAGCAGCAGGAGGAGGCA 61.714 66.667 0.00 0.00 0.00 4.75
3830 4618 2.691623 AGCAGCAGGAGGAGGCAT 60.692 61.111 0.00 0.00 0.00 4.40
3840 4630 1.417890 GGAGGAGGCATTTAGCTAGCA 59.582 52.381 18.83 0.00 44.79 3.49
3850 4640 5.472820 GGCATTTAGCTAGCAGAATTCTGAT 59.527 40.000 34.43 31.05 44.27 2.90
3854 4644 4.767578 AGCTAGCAGAATTCTGATGGAA 57.232 40.909 33.08 15.98 46.59 3.53
3856 4646 5.692928 AGCTAGCAGAATTCTGATGGAAAT 58.307 37.500 33.08 18.62 46.59 2.17
3857 4647 5.531659 AGCTAGCAGAATTCTGATGGAAATG 59.468 40.000 33.08 17.75 46.59 2.32
3858 4648 5.278364 GCTAGCAGAATTCTGATGGAAATGG 60.278 44.000 33.08 16.33 46.59 3.16
3859 4649 3.958798 AGCAGAATTCTGATGGAAATGGG 59.041 43.478 34.43 8.00 46.59 4.00
3861 4651 4.889409 GCAGAATTCTGATGGAAATGGGTA 59.111 41.667 34.43 0.00 46.59 3.69
3862 4652 5.537674 GCAGAATTCTGATGGAAATGGGTAT 59.462 40.000 34.43 0.00 46.59 2.73
3863 4653 6.041296 GCAGAATTCTGATGGAAATGGGTATT 59.959 38.462 34.43 0.00 46.59 1.89
3864 4654 7.431249 CAGAATTCTGATGGAAATGGGTATTG 58.569 38.462 28.13 0.00 46.59 1.90
3865 4655 5.796424 ATTCTGATGGAAATGGGTATTGC 57.204 39.130 0.00 0.00 37.49 3.56
3876 4680 2.378038 TGGGTATTGCCTGATGCTTTC 58.622 47.619 0.00 0.00 42.00 2.62
3880 4684 1.481871 ATTGCCTGATGCTTTCTGGG 58.518 50.000 12.64 5.76 42.28 4.45
3889 4693 3.201930 TGATGCTTTCTGGGGTGCTAATA 59.798 43.478 0.00 0.00 0.00 0.98
3922 4726 1.447643 GCTGGCGATGGGTATCTGT 59.552 57.895 0.00 0.00 0.00 3.41
3965 4769 0.740737 GGAAGAAACATGGATGCCGG 59.259 55.000 0.00 0.00 0.00 6.13
4012 4816 0.610174 TCTCCAGCGAGCAGTTCATT 59.390 50.000 0.00 0.00 35.94 2.57
4127 4931 5.798132 TCTAAGGTGTTACTGTACGAGAGA 58.202 41.667 0.00 0.00 0.00 3.10
4167 4971 2.036604 TGACGGAGCAGTCAAATGTACA 59.963 45.455 0.00 0.00 46.81 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.262448 TACCCCCACCTTGAAGCGC 62.262 63.158 0.00 0.00 0.00 5.92
1 2 1.376812 GTACCCCCACCTTGAAGCG 60.377 63.158 0.00 0.00 0.00 4.68
2 3 1.376812 CGTACCCCCACCTTGAAGC 60.377 63.158 0.00 0.00 0.00 3.86
3 4 0.399075 AACGTACCCCCACCTTGAAG 59.601 55.000 0.00 0.00 0.00 3.02
4 5 0.108963 CAACGTACCCCCACCTTGAA 59.891 55.000 0.00 0.00 0.00 2.69
5 6 0.763604 TCAACGTACCCCCACCTTGA 60.764 55.000 0.00 0.00 0.00 3.02
6 7 0.326927 ATCAACGTACCCCCACCTTG 59.673 55.000 0.00 0.00 0.00 3.61
7 8 1.069775 AATCAACGTACCCCCACCTT 58.930 50.000 0.00 0.00 0.00 3.50
8 9 1.069775 AAATCAACGTACCCCCACCT 58.930 50.000 0.00 0.00 0.00 4.00
9 10 1.170442 CAAATCAACGTACCCCCACC 58.830 55.000 0.00 0.00 0.00 4.61
10 11 0.524414 GCAAATCAACGTACCCCCAC 59.476 55.000 0.00 0.00 0.00 4.61
11 12 0.402504 AGCAAATCAACGTACCCCCA 59.597 50.000 0.00 0.00 0.00 4.96
12 13 1.092348 GAGCAAATCAACGTACCCCC 58.908 55.000 0.00 0.00 0.00 5.40
13 14 1.092348 GGAGCAAATCAACGTACCCC 58.908 55.000 0.00 0.00 0.00 4.95
14 15 0.725117 CGGAGCAAATCAACGTACCC 59.275 55.000 0.00 0.00 0.00 3.69
15 16 1.392510 GACGGAGCAAATCAACGTACC 59.607 52.381 0.00 0.00 37.96 3.34
16 17 1.392510 GGACGGAGCAAATCAACGTAC 59.607 52.381 0.00 0.00 37.96 3.67
17 18 1.274167 AGGACGGAGCAAATCAACGTA 59.726 47.619 0.00 0.00 37.96 3.57
18 19 0.034896 AGGACGGAGCAAATCAACGT 59.965 50.000 0.00 0.00 40.85 3.99
19 20 0.443869 CAGGACGGAGCAAATCAACG 59.556 55.000 0.00 0.00 0.00 4.10
20 21 1.808411 TCAGGACGGAGCAAATCAAC 58.192 50.000 0.00 0.00 0.00 3.18
21 22 2.358957 CATCAGGACGGAGCAAATCAA 58.641 47.619 0.00 0.00 0.00 2.57
22 23 1.407299 CCATCAGGACGGAGCAAATCA 60.407 52.381 0.00 0.00 36.89 2.57
23 24 1.303309 CCATCAGGACGGAGCAAATC 58.697 55.000 0.00 0.00 36.89 2.17
24 25 0.749454 GCCATCAGGACGGAGCAAAT 60.749 55.000 0.00 0.00 36.89 2.32
25 26 1.377202 GCCATCAGGACGGAGCAAA 60.377 57.895 0.00 0.00 36.89 3.68
26 27 1.913951 ATGCCATCAGGACGGAGCAA 61.914 55.000 0.00 0.00 36.89 3.91
27 28 2.369633 ATGCCATCAGGACGGAGCA 61.370 57.895 0.00 0.00 36.89 4.26
28 29 1.890979 CATGCCATCAGGACGGAGC 60.891 63.158 0.00 0.00 36.89 4.70
29 30 1.227764 CCATGCCATCAGGACGGAG 60.228 63.158 0.00 0.00 36.89 4.63
30 31 1.971505 GACCATGCCATCAGGACGGA 61.972 60.000 0.00 0.00 36.89 4.69
31 32 1.524621 GACCATGCCATCAGGACGG 60.525 63.158 0.00 0.00 36.89 4.79
32 33 1.884464 CGACCATGCCATCAGGACG 60.884 63.158 0.00 0.00 36.89 4.79
33 34 1.091771 CACGACCATGCCATCAGGAC 61.092 60.000 0.00 0.00 36.89 3.85
34 35 1.221566 CACGACCATGCCATCAGGA 59.778 57.895 0.00 0.00 36.89 3.86
35 36 1.078214 ACACGACCATGCCATCAGG 60.078 57.895 0.00 0.00 38.23 3.86
36 37 0.391528 TCACACGACCATGCCATCAG 60.392 55.000 0.00 0.00 0.00 2.90
37 38 0.673333 GTCACACGACCATGCCATCA 60.673 55.000 0.00 0.00 36.02 3.07
38 39 0.673333 TGTCACACGACCATGCCATC 60.673 55.000 0.00 0.00 41.85 3.51
39 40 0.955428 GTGTCACACGACCATGCCAT 60.955 55.000 0.00 0.00 41.85 4.40
40 41 1.596752 GTGTCACACGACCATGCCA 60.597 57.895 0.00 0.00 41.85 4.92
41 42 1.301716 AGTGTCACACGACCATGCC 60.302 57.895 1.22 0.00 41.85 4.40
42 43 1.568612 CCAGTGTCACACGACCATGC 61.569 60.000 1.22 0.00 41.85 4.06
43 44 0.249868 ACCAGTGTCACACGACCATG 60.250 55.000 1.22 0.00 41.85 3.66
44 45 0.249868 CACCAGTGTCACACGACCAT 60.250 55.000 1.22 0.00 41.85 3.55
45 46 1.142965 CACCAGTGTCACACGACCA 59.857 57.895 1.22 0.00 41.85 4.02
46 47 2.244651 GCACCAGTGTCACACGACC 61.245 63.158 1.22 0.00 41.85 4.79
47 48 2.244651 GGCACCAGTGTCACACGAC 61.245 63.158 1.22 0.00 42.93 4.34
48 49 2.108157 GGCACCAGTGTCACACGA 59.892 61.111 1.22 0.00 39.64 4.35
61 62 3.223589 ACCAACAAAGCCGGGCAC 61.224 61.111 23.09 0.00 0.00 5.01
62 63 3.222855 CACCAACAAAGCCGGGCA 61.223 61.111 23.09 0.00 0.00 5.36
63 64 2.909965 TCACCAACAAAGCCGGGC 60.910 61.111 12.11 12.11 0.00 6.13
64 65 2.903547 CGTCACCAACAAAGCCGGG 61.904 63.158 2.18 0.00 0.00 5.73
65 66 2.637025 CGTCACCAACAAAGCCGG 59.363 61.111 0.00 0.00 0.00 6.13
66 67 2.051345 GCGTCACCAACAAAGCCG 60.051 61.111 0.00 0.00 0.00 5.52
67 68 2.051345 CGCGTCACCAACAAAGCC 60.051 61.111 0.00 0.00 0.00 4.35
68 69 2.051345 CCGCGTCACCAACAAAGC 60.051 61.111 4.92 0.00 0.00 3.51
69 70 2.051345 GCCGCGTCACCAACAAAG 60.051 61.111 4.92 0.00 0.00 2.77
70 71 0.814410 TAAGCCGCGTCACCAACAAA 60.814 50.000 4.92 0.00 0.00 2.83
71 72 1.225376 CTAAGCCGCGTCACCAACAA 61.225 55.000 4.92 0.00 0.00 2.83
72 73 1.666553 CTAAGCCGCGTCACCAACA 60.667 57.895 4.92 0.00 0.00 3.33
73 74 3.023591 GCTAAGCCGCGTCACCAAC 62.024 63.158 4.92 0.00 0.00 3.77
74 75 2.740826 GCTAAGCCGCGTCACCAA 60.741 61.111 4.92 0.00 0.00 3.67
75 76 3.691342 AGCTAAGCCGCGTCACCA 61.691 61.111 4.92 0.00 34.40 4.17
76 77 3.188786 CAGCTAAGCCGCGTCACC 61.189 66.667 4.92 0.00 34.40 4.02
77 78 3.854459 GCAGCTAAGCCGCGTCAC 61.854 66.667 4.92 0.00 34.40 3.67
78 79 3.589654 AAGCAGCTAAGCCGCGTCA 62.590 57.895 4.92 0.00 34.23 4.35
79 80 1.082117 TAAAGCAGCTAAGCCGCGTC 61.082 55.000 4.92 0.00 34.23 5.19
80 81 1.079405 TAAAGCAGCTAAGCCGCGT 60.079 52.632 4.92 0.00 34.23 6.01
81 82 1.638467 CTAAAGCAGCTAAGCCGCG 59.362 57.895 0.00 0.00 34.23 6.46
82 83 0.744771 ACCTAAAGCAGCTAAGCCGC 60.745 55.000 0.00 0.00 34.23 6.53
83 84 1.134670 AGACCTAAAGCAGCTAAGCCG 60.135 52.381 0.00 0.00 34.23 5.52
84 85 2.680339 CAAGACCTAAAGCAGCTAAGCC 59.320 50.000 0.00 0.00 34.23 4.35
85 86 3.339141 ACAAGACCTAAAGCAGCTAAGC 58.661 45.455 0.00 0.00 0.00 3.09
86 87 5.703130 AGAAACAAGACCTAAAGCAGCTAAG 59.297 40.000 0.00 0.00 0.00 2.18
87 88 5.621193 AGAAACAAGACCTAAAGCAGCTAA 58.379 37.500 0.00 0.00 0.00 3.09
88 89 5.228945 AGAAACAAGACCTAAAGCAGCTA 57.771 39.130 0.00 0.00 0.00 3.32
89 90 4.092116 AGAAACAAGACCTAAAGCAGCT 57.908 40.909 0.00 0.00 0.00 4.24
90 91 4.837896 AAGAAACAAGACCTAAAGCAGC 57.162 40.909 0.00 0.00 0.00 5.25
91 92 5.278512 GGGAAAGAAACAAGACCTAAAGCAG 60.279 44.000 0.00 0.00 0.00 4.24
92 93 4.583073 GGGAAAGAAACAAGACCTAAAGCA 59.417 41.667 0.00 0.00 0.00 3.91
93 94 4.827835 AGGGAAAGAAACAAGACCTAAAGC 59.172 41.667 0.00 0.00 0.00 3.51
94 95 6.961360 AAGGGAAAGAAACAAGACCTAAAG 57.039 37.500 0.00 0.00 0.00 1.85
95 96 6.893005 TGAAAGGGAAAGAAACAAGACCTAAA 59.107 34.615 0.00 0.00 0.00 1.85
96 97 6.428295 TGAAAGGGAAAGAAACAAGACCTAA 58.572 36.000 0.00 0.00 0.00 2.69
97 98 6.008696 TGAAAGGGAAAGAAACAAGACCTA 57.991 37.500 0.00 0.00 0.00 3.08
98 99 4.867086 TGAAAGGGAAAGAAACAAGACCT 58.133 39.130 0.00 0.00 0.00 3.85
99 100 5.509670 CCATGAAAGGGAAAGAAACAAGACC 60.510 44.000 0.00 0.00 43.46 3.85
100 101 5.532557 CCATGAAAGGGAAAGAAACAAGAC 58.467 41.667 0.00 0.00 43.46 3.01
101 102 4.039124 GCCATGAAAGGGAAAGAAACAAGA 59.961 41.667 0.00 0.00 43.46 3.02
102 103 4.039609 AGCCATGAAAGGGAAAGAAACAAG 59.960 41.667 0.00 0.00 43.46 3.16
103 104 3.966665 AGCCATGAAAGGGAAAGAAACAA 59.033 39.130 0.00 0.00 43.46 2.83
104 105 3.321682 CAGCCATGAAAGGGAAAGAAACA 59.678 43.478 0.00 0.00 43.46 2.83
105 106 3.306294 CCAGCCATGAAAGGGAAAGAAAC 60.306 47.826 0.00 0.00 43.46 2.78
106 107 2.899256 CCAGCCATGAAAGGGAAAGAAA 59.101 45.455 0.00 0.00 43.46 2.52
107 108 2.109834 TCCAGCCATGAAAGGGAAAGAA 59.890 45.455 0.00 0.00 43.46 2.52
108 109 1.710244 TCCAGCCATGAAAGGGAAAGA 59.290 47.619 0.00 0.00 43.46 2.52
109 110 2.097825 CTCCAGCCATGAAAGGGAAAG 58.902 52.381 0.00 0.00 43.46 2.62
110 111 1.428912 ACTCCAGCCATGAAAGGGAAA 59.571 47.619 0.00 0.00 43.46 3.13
111 112 1.075601 ACTCCAGCCATGAAAGGGAA 58.924 50.000 0.00 0.00 43.46 3.97
112 113 1.075601 AACTCCAGCCATGAAAGGGA 58.924 50.000 0.00 0.00 43.46 4.20
113 114 1.928868 AAACTCCAGCCATGAAAGGG 58.071 50.000 0.00 0.00 43.76 3.95
114 115 3.445096 CCTAAAACTCCAGCCATGAAAGG 59.555 47.826 0.00 0.00 0.00 3.11
115 116 3.119352 GCCTAAAACTCCAGCCATGAAAG 60.119 47.826 0.00 0.00 0.00 2.62
116 117 2.825532 GCCTAAAACTCCAGCCATGAAA 59.174 45.455 0.00 0.00 0.00 2.69
117 118 2.041620 AGCCTAAAACTCCAGCCATGAA 59.958 45.455 0.00 0.00 0.00 2.57
118 119 1.635487 AGCCTAAAACTCCAGCCATGA 59.365 47.619 0.00 0.00 0.00 3.07
119 120 2.134789 AGCCTAAAACTCCAGCCATG 57.865 50.000 0.00 0.00 0.00 3.66
120 121 2.846827 ACTAGCCTAAAACTCCAGCCAT 59.153 45.455 0.00 0.00 0.00 4.40
121 122 2.266279 ACTAGCCTAAAACTCCAGCCA 58.734 47.619 0.00 0.00 0.00 4.75
122 123 3.705072 TCTACTAGCCTAAAACTCCAGCC 59.295 47.826 0.00 0.00 0.00 4.85
123 124 4.403113 ACTCTACTAGCCTAAAACTCCAGC 59.597 45.833 0.00 0.00 0.00 4.85
124 125 5.419471 ACACTCTACTAGCCTAAAACTCCAG 59.581 44.000 0.00 0.00 0.00 3.86
125 126 5.185249 CACACTCTACTAGCCTAAAACTCCA 59.815 44.000 0.00 0.00 0.00 3.86
126 127 5.185442 ACACACTCTACTAGCCTAAAACTCC 59.815 44.000 0.00 0.00 0.00 3.85
127 128 6.094061 CACACACTCTACTAGCCTAAAACTC 58.906 44.000 0.00 0.00 0.00 3.01
128 129 5.567025 GCACACACTCTACTAGCCTAAAACT 60.567 44.000 0.00 0.00 0.00 2.66
129 130 4.626172 GCACACACTCTACTAGCCTAAAAC 59.374 45.833 0.00 0.00 0.00 2.43
130 131 4.322499 GGCACACACTCTACTAGCCTAAAA 60.322 45.833 0.00 0.00 37.67 1.52
131 132 3.194968 GGCACACACTCTACTAGCCTAAA 59.805 47.826 0.00 0.00 37.67 1.85
132 133 2.758979 GGCACACACTCTACTAGCCTAA 59.241 50.000 0.00 0.00 37.67 2.69
133 134 2.376109 GGCACACACTCTACTAGCCTA 58.624 52.381 0.00 0.00 37.67 3.93
134 135 1.187087 GGCACACACTCTACTAGCCT 58.813 55.000 0.00 0.00 37.67 4.58
135 136 0.179134 CGGCACACACTCTACTAGCC 60.179 60.000 0.00 0.00 37.32 3.93
136 137 0.526662 ACGGCACACACTCTACTAGC 59.473 55.000 0.00 0.00 0.00 3.42
137 138 1.540267 ACACGGCACACACTCTACTAG 59.460 52.381 0.00 0.00 0.00 2.57
138 139 1.612676 ACACGGCACACACTCTACTA 58.387 50.000 0.00 0.00 0.00 1.82
139 140 0.750850 AACACGGCACACACTCTACT 59.249 50.000 0.00 0.00 0.00 2.57
140 141 0.859232 CAACACGGCACACACTCTAC 59.141 55.000 0.00 0.00 0.00 2.59
141 142 0.462375 ACAACACGGCACACACTCTA 59.538 50.000 0.00 0.00 0.00 2.43
142 143 0.462375 TACAACACGGCACACACTCT 59.538 50.000 0.00 0.00 0.00 3.24
143 144 1.459592 GATACAACACGGCACACACTC 59.540 52.381 0.00 0.00 0.00 3.51
144 145 1.508632 GATACAACACGGCACACACT 58.491 50.000 0.00 0.00 0.00 3.55
145 146 0.515564 GGATACAACACGGCACACAC 59.484 55.000 0.00 0.00 0.00 3.82
146 147 0.604243 GGGATACAACACGGCACACA 60.604 55.000 0.00 0.00 39.74 3.72
147 148 0.321298 AGGGATACAACACGGCACAC 60.321 55.000 0.00 0.00 39.74 3.82
148 149 0.036765 GAGGGATACAACACGGCACA 60.037 55.000 0.00 0.00 39.74 4.57
149 150 0.249398 AGAGGGATACAACACGGCAC 59.751 55.000 0.00 0.00 39.74 5.01
150 151 0.981183 AAGAGGGATACAACACGGCA 59.019 50.000 0.00 0.00 39.74 5.69
151 152 1.653151 GAAGAGGGATACAACACGGC 58.347 55.000 0.00 0.00 39.74 5.68
152 153 1.831736 AGGAAGAGGGATACAACACGG 59.168 52.381 0.00 0.00 39.74 4.94
153 154 2.159085 GGAGGAAGAGGGATACAACACG 60.159 54.545 0.00 0.00 39.74 4.49
154 155 2.170817 GGGAGGAAGAGGGATACAACAC 59.829 54.545 0.00 0.00 39.74 3.32
155 156 2.478292 GGGAGGAAGAGGGATACAACA 58.522 52.381 0.00 0.00 39.74 3.33
156 157 1.769465 GGGGAGGAAGAGGGATACAAC 59.231 57.143 0.00 0.00 39.74 3.32
157 158 1.657162 AGGGGAGGAAGAGGGATACAA 59.343 52.381 0.00 0.00 39.74 2.41
158 159 1.220750 GAGGGGAGGAAGAGGGATACA 59.779 57.143 0.00 0.00 39.74 2.29
159 160 1.505977 AGAGGGGAGGAAGAGGGATAC 59.494 57.143 0.00 0.00 0.00 2.24
160 161 1.942882 AGAGGGGAGGAAGAGGGATA 58.057 55.000 0.00 0.00 0.00 2.59
161 162 1.031112 AAGAGGGGAGGAAGAGGGAT 58.969 55.000 0.00 0.00 0.00 3.85
162 163 0.043334 CAAGAGGGGAGGAAGAGGGA 59.957 60.000 0.00 0.00 0.00 4.20
163 164 0.252927 ACAAGAGGGGAGGAAGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
164 165 1.662686 AACAAGAGGGGAGGAAGAGG 58.337 55.000 0.00 0.00 0.00 3.69
165 166 3.445987 AGTAACAAGAGGGGAGGAAGAG 58.554 50.000 0.00 0.00 0.00 2.85
166 167 3.562108 AGTAACAAGAGGGGAGGAAGA 57.438 47.619 0.00 0.00 0.00 2.87
167 168 4.202472 ACAAAGTAACAAGAGGGGAGGAAG 60.202 45.833 0.00 0.00 0.00 3.46
168 169 3.720002 ACAAAGTAACAAGAGGGGAGGAA 59.280 43.478 0.00 0.00 0.00 3.36
169 170 3.323775 ACAAAGTAACAAGAGGGGAGGA 58.676 45.455 0.00 0.00 0.00 3.71
170 171 3.790089 ACAAAGTAACAAGAGGGGAGG 57.210 47.619 0.00 0.00 0.00 4.30
171 172 4.974399 AGAACAAAGTAACAAGAGGGGAG 58.026 43.478 0.00 0.00 0.00 4.30
172 173 4.658901 AGAGAACAAAGTAACAAGAGGGGA 59.341 41.667 0.00 0.00 0.00 4.81
173 174 4.974399 AGAGAACAAAGTAACAAGAGGGG 58.026 43.478 0.00 0.00 0.00 4.79
174 175 6.292150 AGAAGAGAACAAAGTAACAAGAGGG 58.708 40.000 0.00 0.00 0.00 4.30
175 176 7.385478 GGTAGAAGAGAACAAAGTAACAAGAGG 59.615 40.741 0.00 0.00 0.00 3.69
176 177 8.145122 AGGTAGAAGAGAACAAAGTAACAAGAG 58.855 37.037 0.00 0.00 0.00 2.85
177 178 8.019656 AGGTAGAAGAGAACAAAGTAACAAGA 57.980 34.615 0.00 0.00 0.00 3.02
178 179 9.930693 ATAGGTAGAAGAGAACAAAGTAACAAG 57.069 33.333 0.00 0.00 0.00 3.16
179 180 9.924650 GATAGGTAGAAGAGAACAAAGTAACAA 57.075 33.333 0.00 0.00 0.00 2.83
180 181 9.085645 TGATAGGTAGAAGAGAACAAAGTAACA 57.914 33.333 0.00 0.00 0.00 2.41
181 182 9.924650 TTGATAGGTAGAAGAGAACAAAGTAAC 57.075 33.333 0.00 0.00 0.00 2.50
184 185 8.816894 TCATTGATAGGTAGAAGAGAACAAAGT 58.183 33.333 0.00 0.00 0.00 2.66
185 186 9.658799 TTCATTGATAGGTAGAAGAGAACAAAG 57.341 33.333 0.00 0.00 0.00 2.77
188 189 9.658799 CTTTTCATTGATAGGTAGAAGAGAACA 57.341 33.333 0.00 0.00 0.00 3.18
189 190 9.877178 TCTTTTCATTGATAGGTAGAAGAGAAC 57.123 33.333 0.00 0.00 29.83 3.01
193 194 9.967346 CGTATCTTTTCATTGATAGGTAGAAGA 57.033 33.333 0.00 0.00 0.00 2.87
194 195 8.704234 GCGTATCTTTTCATTGATAGGTAGAAG 58.296 37.037 0.00 0.00 35.05 2.85
195 196 8.201464 TGCGTATCTTTTCATTGATAGGTAGAA 58.799 33.333 0.00 0.00 35.05 2.10
196 197 7.722363 TGCGTATCTTTTCATTGATAGGTAGA 58.278 34.615 0.00 0.00 35.05 2.59
197 198 7.946655 TGCGTATCTTTTCATTGATAGGTAG 57.053 36.000 0.00 0.00 35.05 3.18
198 199 7.042051 GCTTGCGTATCTTTTCATTGATAGGTA 60.042 37.037 0.00 0.00 35.05 3.08
199 200 6.238484 GCTTGCGTATCTTTTCATTGATAGGT 60.238 38.462 0.00 0.00 35.05 3.08
200 201 6.017605 AGCTTGCGTATCTTTTCATTGATAGG 60.018 38.462 0.00 0.00 35.44 2.57
201 202 6.952743 AGCTTGCGTATCTTTTCATTGATAG 58.047 36.000 0.00 0.00 0.00 2.08
202 203 6.925610 AGCTTGCGTATCTTTTCATTGATA 57.074 33.333 0.00 0.00 0.00 2.15
203 204 5.824904 AGCTTGCGTATCTTTTCATTGAT 57.175 34.783 0.00 0.00 0.00 2.57
204 205 5.627499 AAGCTTGCGTATCTTTTCATTGA 57.373 34.783 0.00 0.00 0.00 2.57
205 206 5.630680 ACAAAGCTTGCGTATCTTTTCATTG 59.369 36.000 0.00 0.00 0.00 2.82
206 207 5.630680 CACAAAGCTTGCGTATCTTTTCATT 59.369 36.000 0.00 0.00 0.00 2.57
207 208 5.156355 CACAAAGCTTGCGTATCTTTTCAT 58.844 37.500 0.00 0.00 0.00 2.57
208 209 4.036262 ACACAAAGCTTGCGTATCTTTTCA 59.964 37.500 0.00 0.00 0.00 2.69
209 210 4.537015 ACACAAAGCTTGCGTATCTTTTC 58.463 39.130 0.00 0.00 0.00 2.29
210 211 4.568152 ACACAAAGCTTGCGTATCTTTT 57.432 36.364 0.00 0.00 0.00 2.27
211 212 5.880054 ATACACAAAGCTTGCGTATCTTT 57.120 34.783 0.00 0.00 34.73 2.52
212 213 5.445939 CGAATACACAAAGCTTGCGTATCTT 60.446 40.000 0.00 0.00 37.78 2.40
213 214 4.032900 CGAATACACAAAGCTTGCGTATCT 59.967 41.667 0.00 0.00 37.78 1.98
214 215 4.201685 ACGAATACACAAAGCTTGCGTATC 60.202 41.667 0.00 2.23 37.78 2.24
215 216 3.682858 ACGAATACACAAAGCTTGCGTAT 59.317 39.130 0.00 4.82 39.76 3.06
216 217 3.061322 ACGAATACACAAAGCTTGCGTA 58.939 40.909 0.00 2.37 33.27 4.42
217 218 1.871039 ACGAATACACAAAGCTTGCGT 59.129 42.857 0.00 0.00 0.00 5.24
218 219 2.096466 TCACGAATACACAAAGCTTGCG 60.096 45.455 0.00 0.00 0.00 4.85
219 220 3.536158 TCACGAATACACAAAGCTTGC 57.464 42.857 0.00 0.00 0.00 4.01
220 221 6.804534 TTTTTCACGAATACACAAAGCTTG 57.195 33.333 0.00 0.00 0.00 4.01
251 252 9.713740 GGGATCATATATACGACTTAACGTTAG 57.286 37.037 8.23 5.77 44.14 2.34
252 253 9.453572 AGGGATCATATATACGACTTAACGTTA 57.546 33.333 3.29 3.29 44.14 3.18
253 254 8.242053 CAGGGATCATATATACGACTTAACGTT 58.758 37.037 5.88 5.88 44.14 3.99
255 256 7.194278 CCAGGGATCATATATACGACTTAACG 58.806 42.308 0.00 0.00 39.31 3.18
256 257 7.490000 CCCAGGGATCATATATACGACTTAAC 58.510 42.308 0.00 0.00 0.00 2.01
257 258 6.097839 GCCCAGGGATCATATATACGACTTAA 59.902 42.308 10.89 0.00 0.00 1.85
258 259 5.597182 GCCCAGGGATCATATATACGACTTA 59.403 44.000 10.89 0.00 0.00 2.24
259 260 4.406003 GCCCAGGGATCATATATACGACTT 59.594 45.833 10.89 0.00 0.00 3.01
260 261 3.961408 GCCCAGGGATCATATATACGACT 59.039 47.826 10.89 0.00 0.00 4.18
261 262 3.704566 TGCCCAGGGATCATATATACGAC 59.295 47.826 10.89 0.00 0.00 4.34
262 263 3.989056 TGCCCAGGGATCATATATACGA 58.011 45.455 10.89 0.00 0.00 3.43
263 264 4.344968 TCATGCCCAGGGATCATATATACG 59.655 45.833 10.89 0.00 0.00 3.06
264 265 5.367937 ACTCATGCCCAGGGATCATATATAC 59.632 44.000 10.89 0.00 0.00 1.47
265 266 5.541775 ACTCATGCCCAGGGATCATATATA 58.458 41.667 10.89 0.00 0.00 0.86
266 267 4.378047 ACTCATGCCCAGGGATCATATAT 58.622 43.478 10.89 0.00 0.00 0.86
267 268 3.776969 GACTCATGCCCAGGGATCATATA 59.223 47.826 10.89 0.00 0.00 0.86
268 269 2.575279 GACTCATGCCCAGGGATCATAT 59.425 50.000 10.89 0.00 0.00 1.78
269 270 1.980765 GACTCATGCCCAGGGATCATA 59.019 52.381 10.89 0.00 0.00 2.15
270 271 0.769873 GACTCATGCCCAGGGATCAT 59.230 55.000 10.89 0.21 0.00 2.45
271 272 1.348008 GGACTCATGCCCAGGGATCA 61.348 60.000 10.89 0.00 0.00 2.92
272 273 1.453669 GGACTCATGCCCAGGGATC 59.546 63.158 10.89 0.00 0.00 3.36
273 274 2.081161 GGGACTCATGCCCAGGGAT 61.081 63.158 10.89 0.00 45.31 3.85
274 275 2.692368 GGGACTCATGCCCAGGGA 60.692 66.667 10.89 0.00 45.31 4.20
280 281 4.408821 TGCGGTGGGACTCATGCC 62.409 66.667 0.62 0.00 36.69 4.40
281 282 2.821366 CTGCGGTGGGACTCATGC 60.821 66.667 0.00 0.00 0.00 4.06
282 283 2.124983 CCTGCGGTGGGACTCATG 60.125 66.667 0.00 0.00 0.00 3.07
283 284 4.101448 GCCTGCGGTGGGACTCAT 62.101 66.667 0.00 0.00 0.00 2.90
285 286 4.459089 GAGCCTGCGGTGGGACTC 62.459 72.222 0.00 0.00 0.00 3.36
296 297 4.767255 GGTGACAGCCCGAGCCTG 62.767 72.222 0.00 0.00 41.25 4.85
490 493 2.904866 GTCCAAGCGTGCACCCAA 60.905 61.111 12.15 0.00 0.00 4.12
495 498 2.280797 GGAGTGTCCAAGCGTGCA 60.281 61.111 0.00 0.00 36.28 4.57
531 535 1.153429 GCCAGCCTGGTTAGGTACG 60.153 63.158 13.35 0.00 46.41 3.67
681 710 3.480133 GGCCGGCATACTGGAGGT 61.480 66.667 30.85 0.00 46.41 3.85
690 719 2.343475 ATCCATTCTTCGGCCGGCAT 62.343 55.000 30.85 9.12 0.00 4.40
694 723 0.105964 TGGTATCCATTCTTCGGCCG 59.894 55.000 22.12 22.12 0.00 6.13
733 765 0.390860 ATCTATCGGCAGGTGAGCAC 59.609 55.000 0.00 0.00 35.83 4.40
737 769 5.597182 AGTTTTACTATCTATCGGCAGGTGA 59.403 40.000 0.00 0.00 0.00 4.02
738 770 5.692204 CAGTTTTACTATCTATCGGCAGGTG 59.308 44.000 0.00 0.00 0.00 4.00
739 771 5.363005 ACAGTTTTACTATCTATCGGCAGGT 59.637 40.000 0.00 0.00 0.00 4.00
741 773 7.772332 AAACAGTTTTACTATCTATCGGCAG 57.228 36.000 0.00 0.00 0.00 4.85
742 774 9.309516 CTTAAACAGTTTTACTATCTATCGGCA 57.690 33.333 3.25 0.00 0.00 5.69
743 775 8.274248 GCTTAAACAGTTTTACTATCTATCGGC 58.726 37.037 3.25 0.00 0.00 5.54
775 1427 7.776969 ACACATATCTATCTCACTTGGCAAAAT 59.223 33.333 0.00 0.00 0.00 1.82
809 1472 1.662122 GTAATGCGGGTTGGAACGTAG 59.338 52.381 0.00 0.00 0.00 3.51
811 1474 0.035739 AGTAATGCGGGTTGGAACGT 59.964 50.000 0.00 0.00 0.00 3.99
840 1520 8.296000 TGTTGCTTACTATACTTGTACACGTAA 58.704 33.333 15.29 5.56 0.00 3.18
841 1521 7.750458 GTGTTGCTTACTATACTTGTACACGTA 59.250 37.037 13.89 13.89 0.00 3.57
842 1522 6.583806 GTGTTGCTTACTATACTTGTACACGT 59.416 38.462 10.14 10.14 0.00 4.49
843 1523 6.805271 AGTGTTGCTTACTATACTTGTACACG 59.195 38.462 0.00 0.00 0.00 4.49
858 1538 6.631016 CCTACTCTACATTCAGTGTTGCTTA 58.369 40.000 0.00 0.00 42.29 3.09
921 1601 9.851686 TGCCATAATTCTGAATGATACTTACTT 57.148 29.630 3.22 0.00 0.00 2.24
955 1635 1.599047 CTGGCCAGTAGTGTCAGGG 59.401 63.158 25.53 0.00 0.00 4.45
1032 1715 0.606401 CCGTGCTGTTGGAAGTGGAT 60.606 55.000 0.00 0.00 0.00 3.41
1127 1818 5.316167 TGGTCACAGCTTGTCATTCTTATT 58.684 37.500 0.00 0.00 0.00 1.40
1153 1847 0.535780 TGTGCAGGCAAGAACTGAGG 60.536 55.000 0.00 0.00 38.20 3.86
1195 1893 6.375455 ACATAAAATTCACGCAAGGATCTCTT 59.625 34.615 0.00 0.00 46.39 2.85
1207 1905 4.957967 GCACTCGATCACATAAAATTCACG 59.042 41.667 0.00 0.00 0.00 4.35
1217 1915 2.744202 GGAAAACAGCACTCGATCACAT 59.256 45.455 0.00 0.00 0.00 3.21
1227 1925 5.517054 TCACAAAAATAACGGAAAACAGCAC 59.483 36.000 0.00 0.00 0.00 4.40
1229 1927 6.419413 TGATCACAAAAATAACGGAAAACAGC 59.581 34.615 0.00 0.00 0.00 4.40
1241 1943 6.183360 ACAGGCGCAATATGATCACAAAAATA 60.183 34.615 10.83 0.00 0.00 1.40
1251 1953 3.748083 AGATCAACAGGCGCAATATGAT 58.252 40.909 10.83 13.52 0.00 2.45
1252 1954 3.133691 GAGATCAACAGGCGCAATATGA 58.866 45.455 10.83 8.77 0.00 2.15
1266 1968 4.792068 ACCCTTGACTTGTTTGAGATCAA 58.208 39.130 0.00 0.00 0.00 2.57
1429 2134 1.880340 CTTGGCGTCGATGAGGCTC 60.880 63.158 9.31 7.79 42.20 4.70
1435 2140 1.424493 GAGGCTTCTTGGCGTCGATG 61.424 60.000 0.00 0.00 46.88 3.84
1516 2221 1.296715 GGTGAGCAGGGTGGTGTAG 59.703 63.158 0.00 0.00 0.00 2.74
1867 2572 4.819105 CTTCACCAGGATGTTGTAGGTA 57.181 45.455 0.00 0.00 0.00 3.08
2397 3130 1.242665 TGCTGCATTTCGCCATGTGA 61.243 50.000 0.00 0.00 41.33 3.58
2429 3162 3.721172 ATCCCGGCCTCCACCATCT 62.721 63.158 0.00 0.00 0.00 2.90
2607 3340 1.302511 GGTGGCGTTGTCCATGTCT 60.303 57.895 0.00 0.00 38.57 3.41
2623 3356 1.909302 CATCTTCCTGTACACCCTGGT 59.091 52.381 0.00 0.00 0.00 4.00
2761 3494 2.511145 GCTCTGCTTCGGCCTGAG 60.511 66.667 0.00 0.00 40.70 3.35
2921 3660 0.038251 TCTTCGCAGCTTGTCATCGT 60.038 50.000 0.00 0.00 0.00 3.73
2922 3661 1.257415 GATCTTCGCAGCTTGTCATCG 59.743 52.381 0.00 0.00 0.00 3.84
2923 3662 1.596727 GGATCTTCGCAGCTTGTCATC 59.403 52.381 0.00 0.00 0.00 2.92
2924 3663 1.661341 GGATCTTCGCAGCTTGTCAT 58.339 50.000 0.00 0.00 0.00 3.06
2925 3664 0.737367 CGGATCTTCGCAGCTTGTCA 60.737 55.000 0.00 0.00 0.00 3.58
2926 3665 1.424493 CCGGATCTTCGCAGCTTGTC 61.424 60.000 0.00 0.00 0.00 3.18
2936 3675 0.827368 ACTGGCTCTTCCGGATCTTC 59.173 55.000 4.15 0.00 44.37 2.87
2937 3676 0.539051 CACTGGCTCTTCCGGATCTT 59.461 55.000 4.15 0.00 44.37 2.40
3097 3839 1.460273 TTCCTGCAAAACCCCGAAGC 61.460 55.000 0.00 0.00 0.00 3.86
3099 3841 1.110518 GGTTCCTGCAAAACCCCGAA 61.111 55.000 16.43 0.00 40.29 4.30
3117 3859 1.228675 ACCCTGCTTCTGCCTTTGG 60.229 57.895 0.00 0.00 38.71 3.28
3139 3881 2.625737 GCTGATGCTGTGACTGTACAT 58.374 47.619 0.00 0.00 36.03 2.29
3183 3925 1.133025 CAAACAATGGCCGCCTCTTAG 59.867 52.381 11.61 0.00 0.00 2.18
3315 4083 0.962489 CTCTGTGGAACGGTGAGACT 59.038 55.000 0.00 0.00 45.64 3.24
3323 4091 0.868406 GGAGTTTGCTCTGTGGAACG 59.132 55.000 0.00 0.00 41.38 3.95
3324 4092 1.239347 GGGAGTTTGCTCTGTGGAAC 58.761 55.000 0.00 0.00 41.38 3.62
3337 4111 1.145738 ACATGCTGTTTGAGGGGAGTT 59.854 47.619 0.00 0.00 0.00 3.01
3501 4283 5.945191 TGGTGATCAATTGCTTGAGATGTTA 59.055 36.000 0.00 0.00 44.32 2.41
3517 4299 5.181009 CAGCTACTCTTGATTTGGTGATCA 58.819 41.667 0.00 0.00 34.37 2.92
3698 4480 0.690762 GGCTACCTTTGTCCTCACCA 59.309 55.000 0.00 0.00 0.00 4.17
3807 4589 1.000866 TCCTCCTGCTGCTGCTCTA 59.999 57.895 17.00 1.07 40.48 2.43
3829 4617 6.835174 TCCATCAGAATTCTGCTAGCTAAAT 58.165 36.000 27.45 12.35 43.46 1.40
3830 4618 6.239217 TCCATCAGAATTCTGCTAGCTAAA 57.761 37.500 27.45 10.64 43.46 1.85
3840 4630 6.041296 GCAATACCCATTTCCATCAGAATTCT 59.959 38.462 0.88 0.88 33.44 2.40
3850 4640 3.298619 CATCAGGCAATACCCATTTCCA 58.701 45.455 0.00 0.00 40.58 3.53
3864 4654 1.000396 ACCCCAGAAAGCATCAGGC 60.000 57.895 0.00 0.00 45.30 4.85
3865 4655 1.318158 GCACCCCAGAAAGCATCAGG 61.318 60.000 0.00 0.00 34.56 3.86
3876 4680 4.080526 AGGTAGTGTTTATTAGCACCCCAG 60.081 45.833 7.44 0.00 36.35 4.45
3880 4684 4.874396 GGTCAGGTAGTGTTTATTAGCACC 59.126 45.833 0.00 0.00 36.35 5.01
3889 4693 0.034896 CCAGCGGTCAGGTAGTGTTT 59.965 55.000 0.00 0.00 0.00 2.83
3922 4726 4.155709 CCTCCATCCAGCTCTACTATTCA 58.844 47.826 0.00 0.00 0.00 2.57
3965 4769 0.609131 CACAACCCCTCCACCATGTC 60.609 60.000 0.00 0.00 0.00 3.06
4012 4816 1.593209 GCCGACCAAGTTCGTCACA 60.593 57.895 1.50 0.00 37.29 3.58
4127 4931 5.396436 CCGTCACCTTAAATTCAGTATCCCT 60.396 44.000 0.00 0.00 0.00 4.20
4167 4971 1.006102 CAGCGTCCTCGTCAAGGTT 60.006 57.895 0.00 0.00 46.32 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.