Multiple sequence alignment - TraesCS3B01G179800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G179800 chr3B 100.000 5136 0 0 1 5136 187590970 187585835 0.000000e+00 9485.0
1 TraesCS3B01G179800 chr3B 75.176 568 73 39 4600 5133 187579377 187578844 6.740000e-49 206.0
2 TraesCS3B01G179800 chr3A 94.084 2434 96 20 2062 4472 143544312 143541904 0.000000e+00 3653.0
3 TraesCS3B01G179800 chr3A 93.998 1033 38 11 869 1893 143545324 143544308 0.000000e+00 1543.0
4 TraesCS3B01G179800 chr3A 88.856 673 52 10 4475 5133 143541839 143541176 0.000000e+00 806.0
5 TraesCS3B01G179800 chr3A 85.263 665 65 13 231 872 143547154 143546500 0.000000e+00 654.0
6 TraesCS3B01G179800 chr3A 78.300 447 50 26 4539 4960 143540832 143540408 1.430000e-60 244.0
7 TraesCS3B01G179800 chr3D 90.427 1358 95 20 3164 4489 131247607 131246253 0.000000e+00 1755.0
8 TraesCS3B01G179800 chr3D 89.735 1169 82 21 536 1679 131250198 131249043 0.000000e+00 1459.0
9 TraesCS3B01G179800 chr3D 86.542 1122 94 30 1678 2780 131249006 131247923 0.000000e+00 1182.0
10 TraesCS3B01G179800 chr3D 92.879 323 20 3 2808 3129 131247927 131247607 2.800000e-127 466.0
11 TraesCS3B01G179800 chr3D 82.281 491 40 18 4586 5061 131246020 131245562 1.040000e-101 381.0
12 TraesCS3B01G179800 chr3D 75.304 575 65 38 4606 5133 131245233 131244689 2.420000e-48 204.0
13 TraesCS3B01G179800 chr3D 77.619 210 43 4 236 444 238477658 238477864 1.940000e-24 124.0
14 TraesCS3B01G179800 chr6B 76.068 234 50 5 210 442 613895100 613894872 3.250000e-22 117.0
15 TraesCS3B01G179800 chr6B 75.701 214 46 5 230 442 613905175 613904967 9.100000e-18 102.0
16 TraesCS3B01G179800 chr5B 97.143 35 0 1 4725 4758 608159599 608159633 2.000000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G179800 chr3B 187585835 187590970 5135 True 9485.000000 9485 100.000000 1 5136 1 chr3B.!!$R2 5135
1 TraesCS3B01G179800 chr3B 187578844 187579377 533 True 206.000000 206 75.176000 4600 5133 1 chr3B.!!$R1 533
2 TraesCS3B01G179800 chr3A 143540408 143547154 6746 True 1380.000000 3653 88.100200 231 5133 5 chr3A.!!$R1 4902
3 TraesCS3B01G179800 chr3D 131244689 131250198 5509 True 907.833333 1755 86.194667 536 5133 6 chr3D.!!$R1 4597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.036306 GGGAGGCCAGACGAAGAAAA 59.964 55.0 5.01 0.0 0.00 2.29 F
425 430 0.247736 CCACTATCGCCTGGCTATCC 59.752 60.0 17.92 0.0 0.00 2.59 F
430 435 0.972983 ATCGCCTGGCTATCCGCTAT 60.973 55.0 17.92 0.0 39.13 2.97 F
1328 2545 0.112606 TAGGCTACCAGAGGGATCGG 59.887 60.0 0.00 0.0 38.05 4.18 F
1963 3228 0.107993 TTCGCTGGGCATCAGAAGAG 60.108 55.0 10.03 0.0 46.18 2.85 F
3587 4891 0.107643 TCATTCGTTGCACCCTGTCA 59.892 50.0 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1205 2421 0.250901 CCATGGAATCCGGGGATCAC 60.251 60.000 5.56 0.00 33.08 3.06 R
1254 2471 1.100510 AGCGACCGTATTAGCTGACA 58.899 50.000 0.00 0.00 38.67 3.58 R
1941 3206 1.747355 CTTCTGATGCCCAGCGAAATT 59.253 47.619 0.00 0.00 42.62 1.82 R
3311 4606 1.851666 GCAACAAAATGTGTGACACCG 59.148 47.619 13.85 0.00 40.60 4.94 R
3684 4990 1.208614 GGCAGCTTGCTTCACGAAG 59.791 57.895 2.29 2.29 44.28 3.79 R
4908 7202 0.109597 GTCTTCGGTTGCAGCCAATG 60.110 55.000 20.42 3.56 32.75 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.463515 CAAACATAGCGACCATCATCAG 57.536 45.455 0.00 0.00 0.00 2.90
22 23 2.827800 ACATAGCGACCATCATCAGG 57.172 50.000 0.00 0.00 0.00 3.86
23 24 1.345741 ACATAGCGACCATCATCAGGG 59.654 52.381 0.00 0.00 0.00 4.45
24 25 1.620323 CATAGCGACCATCATCAGGGA 59.380 52.381 0.00 0.00 0.00 4.20
25 26 1.332195 TAGCGACCATCATCAGGGAG 58.668 55.000 0.00 0.00 0.00 4.30
26 27 1.070445 GCGACCATCATCAGGGAGG 59.930 63.158 0.00 0.00 0.00 4.30
27 28 1.070445 CGACCATCATCAGGGAGGC 59.930 63.158 0.00 0.00 0.00 4.70
28 29 1.453669 GACCATCATCAGGGAGGCC 59.546 63.158 0.00 0.00 0.00 5.19
29 30 1.308128 ACCATCATCAGGGAGGCCA 60.308 57.895 5.01 0.00 0.00 5.36
30 31 1.351080 ACCATCATCAGGGAGGCCAG 61.351 60.000 5.01 0.00 0.00 4.85
31 32 1.058428 CCATCATCAGGGAGGCCAGA 61.058 60.000 5.01 0.00 0.00 3.86
32 33 0.108207 CATCATCAGGGAGGCCAGAC 59.892 60.000 5.01 0.00 0.00 3.51
33 34 1.406065 ATCATCAGGGAGGCCAGACG 61.406 60.000 5.01 0.00 0.00 4.18
34 35 2.060383 CATCAGGGAGGCCAGACGA 61.060 63.158 5.01 0.00 0.00 4.20
35 36 1.306141 ATCAGGGAGGCCAGACGAA 60.306 57.895 5.01 0.00 0.00 3.85
36 37 1.333636 ATCAGGGAGGCCAGACGAAG 61.334 60.000 5.01 0.00 0.00 3.79
37 38 1.984570 CAGGGAGGCCAGACGAAGA 60.985 63.158 5.01 0.00 0.00 2.87
38 39 1.229209 AGGGAGGCCAGACGAAGAA 60.229 57.895 5.01 0.00 0.00 2.52
39 40 0.836400 AGGGAGGCCAGACGAAGAAA 60.836 55.000 5.01 0.00 0.00 2.52
40 41 0.036306 GGGAGGCCAGACGAAGAAAA 59.964 55.000 5.01 0.00 0.00 2.29
41 42 1.544759 GGGAGGCCAGACGAAGAAAAA 60.545 52.381 5.01 0.00 0.00 1.94
42 43 2.437413 GGAGGCCAGACGAAGAAAAAT 58.563 47.619 5.01 0.00 0.00 1.82
43 44 2.420372 GGAGGCCAGACGAAGAAAAATC 59.580 50.000 5.01 0.00 0.00 2.17
44 45 3.074412 GAGGCCAGACGAAGAAAAATCA 58.926 45.455 5.01 0.00 0.00 2.57
45 46 3.690460 AGGCCAGACGAAGAAAAATCAT 58.310 40.909 5.01 0.00 0.00 2.45
46 47 4.082125 AGGCCAGACGAAGAAAAATCATT 58.918 39.130 5.01 0.00 0.00 2.57
47 48 4.082571 AGGCCAGACGAAGAAAAATCATTG 60.083 41.667 5.01 0.00 0.00 2.82
48 49 3.609807 GCCAGACGAAGAAAAATCATTGC 59.390 43.478 0.00 0.00 0.00 3.56
49 50 4.616835 GCCAGACGAAGAAAAATCATTGCT 60.617 41.667 0.00 0.00 0.00 3.91
50 51 5.391950 GCCAGACGAAGAAAAATCATTGCTA 60.392 40.000 0.00 0.00 0.00 3.49
51 52 6.611381 CCAGACGAAGAAAAATCATTGCTAA 58.389 36.000 0.00 0.00 0.00 3.09
52 53 6.524586 CCAGACGAAGAAAAATCATTGCTAAC 59.475 38.462 0.00 0.00 0.00 2.34
53 54 7.301054 CAGACGAAGAAAAATCATTGCTAACT 58.699 34.615 0.00 0.00 0.00 2.24
54 55 8.443160 CAGACGAAGAAAAATCATTGCTAACTA 58.557 33.333 0.00 0.00 0.00 2.24
55 56 8.660373 AGACGAAGAAAAATCATTGCTAACTAG 58.340 33.333 0.00 0.00 0.00 2.57
56 57 8.324163 ACGAAGAAAAATCATTGCTAACTAGT 57.676 30.769 0.00 0.00 0.00 2.57
57 58 8.784043 ACGAAGAAAAATCATTGCTAACTAGTT 58.216 29.630 13.68 13.68 0.00 2.24
58 59 9.055248 CGAAGAAAAATCATTGCTAACTAGTTG 57.945 33.333 18.56 9.20 0.00 3.16
59 60 9.899226 GAAGAAAAATCATTGCTAACTAGTTGT 57.101 29.630 18.56 0.00 0.00 3.32
60 61 9.683069 AAGAAAAATCATTGCTAACTAGTTGTG 57.317 29.630 18.56 11.54 0.00 3.33
61 62 9.066892 AGAAAAATCATTGCTAACTAGTTGTGA 57.933 29.630 18.56 13.31 0.00 3.58
62 63 9.846248 GAAAAATCATTGCTAACTAGTTGTGAT 57.154 29.630 18.56 14.71 0.00 3.06
67 68 7.919690 TCATTGCTAACTAGTTGTGATTATGC 58.080 34.615 18.56 9.27 0.00 3.14
68 69 7.552330 TCATTGCTAACTAGTTGTGATTATGCA 59.448 33.333 18.56 11.38 0.00 3.96
69 70 6.662414 TGCTAACTAGTTGTGATTATGCAC 57.338 37.500 18.56 0.00 39.22 4.57
70 71 6.406370 TGCTAACTAGTTGTGATTATGCACT 58.594 36.000 18.56 0.00 39.49 4.40
71 72 6.535150 TGCTAACTAGTTGTGATTATGCACTC 59.465 38.462 18.56 0.00 39.49 3.51
72 73 6.758886 GCTAACTAGTTGTGATTATGCACTCT 59.241 38.462 18.56 0.00 39.49 3.24
73 74 7.043059 GCTAACTAGTTGTGATTATGCACTCTC 60.043 40.741 18.56 0.00 39.49 3.20
74 75 6.286240 ACTAGTTGTGATTATGCACTCTCA 57.714 37.500 0.00 0.00 39.49 3.27
75 76 6.882656 ACTAGTTGTGATTATGCACTCTCAT 58.117 36.000 0.00 0.00 39.49 2.90
76 77 8.011844 ACTAGTTGTGATTATGCACTCTCATA 57.988 34.615 0.00 0.00 39.49 2.15
77 78 8.478066 ACTAGTTGTGATTATGCACTCTCATAA 58.522 33.333 0.00 0.00 41.49 1.90
78 79 7.783090 AGTTGTGATTATGCACTCTCATAAG 57.217 36.000 0.00 0.00 40.84 1.73
79 80 6.259608 AGTTGTGATTATGCACTCTCATAAGC 59.740 38.462 0.00 5.20 42.47 3.09
80 81 5.673514 TGTGATTATGCACTCTCATAAGCA 58.326 37.500 9.50 9.50 46.60 3.91
82 83 5.673514 TGATTATGCACTCTCATAAGCACA 58.326 37.500 9.50 4.51 45.04 4.57
83 84 6.114767 TGATTATGCACTCTCATAAGCACAA 58.885 36.000 9.50 0.00 45.04 3.33
84 85 6.598850 TGATTATGCACTCTCATAAGCACAAA 59.401 34.615 9.50 0.00 45.04 2.83
85 86 7.283807 TGATTATGCACTCTCATAAGCACAAAT 59.716 33.333 9.50 0.00 45.04 2.32
86 87 5.909621 ATGCACTCTCATAAGCACAAATT 57.090 34.783 0.00 0.00 40.14 1.82
87 88 5.710513 TGCACTCTCATAAGCACAAATTT 57.289 34.783 0.00 0.00 31.05 1.82
88 89 6.088016 TGCACTCTCATAAGCACAAATTTT 57.912 33.333 0.00 0.00 31.05 1.82
89 90 5.921976 TGCACTCTCATAAGCACAAATTTTG 59.078 36.000 7.59 7.59 31.05 2.44
90 91 5.164022 GCACTCTCATAAGCACAAATTTTGC 60.164 40.000 9.04 13.93 40.52 3.68
91 92 5.346822 CACTCTCATAAGCACAAATTTTGCC 59.653 40.000 16.59 1.19 41.18 4.52
92 93 5.244626 ACTCTCATAAGCACAAATTTTGCCT 59.755 36.000 16.59 10.05 41.18 4.75
93 94 5.713025 TCTCATAAGCACAAATTTTGCCTC 58.287 37.500 16.59 0.00 41.18 4.70
94 95 5.477984 TCTCATAAGCACAAATTTTGCCTCT 59.522 36.000 16.59 1.52 41.18 3.69
95 96 5.472148 TCATAAGCACAAATTTTGCCTCTG 58.528 37.500 16.59 12.72 41.18 3.35
96 97 2.159327 AGCACAAATTTTGCCTCTGC 57.841 45.000 16.59 10.86 41.18 4.26
97 98 1.150827 GCACAAATTTTGCCTCTGCC 58.849 50.000 9.04 0.00 36.33 4.85
98 99 1.270465 GCACAAATTTTGCCTCTGCCT 60.270 47.619 9.04 0.00 36.33 4.75
99 100 2.680577 CACAAATTTTGCCTCTGCCTC 58.319 47.619 9.04 0.00 36.33 4.70
100 101 2.036217 CACAAATTTTGCCTCTGCCTCA 59.964 45.455 9.04 0.00 36.33 3.86
101 102 2.699846 ACAAATTTTGCCTCTGCCTCAA 59.300 40.909 9.04 0.00 36.33 3.02
102 103 3.134442 ACAAATTTTGCCTCTGCCTCAAA 59.866 39.130 9.04 0.00 36.33 2.69
103 104 3.391506 AATTTTGCCTCTGCCTCAAAC 57.608 42.857 0.00 0.00 36.33 2.93
104 105 2.071778 TTTTGCCTCTGCCTCAAACT 57.928 45.000 0.00 0.00 36.33 2.66
105 106 2.949177 TTTGCCTCTGCCTCAAACTA 57.051 45.000 0.00 0.00 36.33 2.24
106 107 3.439857 TTTGCCTCTGCCTCAAACTAT 57.560 42.857 0.00 0.00 36.33 2.12
107 108 2.698855 TGCCTCTGCCTCAAACTATC 57.301 50.000 0.00 0.00 36.33 2.08
108 109 1.908619 TGCCTCTGCCTCAAACTATCA 59.091 47.619 0.00 0.00 36.33 2.15
109 110 2.507058 TGCCTCTGCCTCAAACTATCAT 59.493 45.455 0.00 0.00 36.33 2.45
110 111 2.877168 GCCTCTGCCTCAAACTATCATG 59.123 50.000 0.00 0.00 0.00 3.07
111 112 3.683847 GCCTCTGCCTCAAACTATCATGT 60.684 47.826 0.00 0.00 0.00 3.21
112 113 4.443457 GCCTCTGCCTCAAACTATCATGTA 60.443 45.833 0.00 0.00 0.00 2.29
113 114 5.053145 CCTCTGCCTCAAACTATCATGTAC 58.947 45.833 0.00 0.00 0.00 2.90
114 115 5.395657 CCTCTGCCTCAAACTATCATGTACA 60.396 44.000 0.00 0.00 0.00 2.90
115 116 6.048732 TCTGCCTCAAACTATCATGTACAA 57.951 37.500 0.00 0.00 0.00 2.41
116 117 6.108687 TCTGCCTCAAACTATCATGTACAAG 58.891 40.000 0.00 0.00 0.00 3.16
117 118 6.048732 TGCCTCAAACTATCATGTACAAGA 57.951 37.500 2.84 2.84 0.00 3.02
118 119 6.472016 TGCCTCAAACTATCATGTACAAGAA 58.528 36.000 4.69 0.00 0.00 2.52
119 120 6.939730 TGCCTCAAACTATCATGTACAAGAAA 59.060 34.615 4.69 0.00 0.00 2.52
120 121 7.094805 TGCCTCAAACTATCATGTACAAGAAAC 60.095 37.037 4.69 0.00 0.00 2.78
121 122 7.626452 GCCTCAAACTATCATGTACAAGAAACC 60.626 40.741 4.69 0.00 0.00 3.27
122 123 7.390440 CCTCAAACTATCATGTACAAGAAACCA 59.610 37.037 4.69 0.00 0.00 3.67
123 124 8.684386 TCAAACTATCATGTACAAGAAACCAA 57.316 30.769 4.69 0.00 0.00 3.67
124 125 9.126151 TCAAACTATCATGTACAAGAAACCAAA 57.874 29.630 4.69 0.00 0.00 3.28
125 126 9.912634 CAAACTATCATGTACAAGAAACCAAAT 57.087 29.630 4.69 0.00 0.00 2.32
157 158 9.444600 TTTTTGATACTATCTTTCCTGTGGTAC 57.555 33.333 0.00 0.00 0.00 3.34
158 159 7.973048 TTGATACTATCTTTCCTGTGGTACT 57.027 36.000 0.00 0.00 0.00 2.73
159 160 7.348080 TGATACTATCTTTCCTGTGGTACTG 57.652 40.000 0.00 0.00 0.00 2.74
160 161 7.123383 TGATACTATCTTTCCTGTGGTACTGA 58.877 38.462 0.00 0.00 0.00 3.41
161 162 7.785028 TGATACTATCTTTCCTGTGGTACTGAT 59.215 37.037 0.00 0.00 0.00 2.90
162 163 9.298250 GATACTATCTTTCCTGTGGTACTGATA 57.702 37.037 0.00 0.00 0.00 2.15
163 164 7.589958 ACTATCTTTCCTGTGGTACTGATAG 57.410 40.000 0.00 0.00 38.49 2.08
164 165 7.126733 ACTATCTTTCCTGTGGTACTGATAGT 58.873 38.462 0.00 0.00 39.89 2.12
165 166 6.875972 ATCTTTCCTGTGGTACTGATAGTT 57.124 37.500 0.00 0.00 0.00 2.24
166 167 6.681729 TCTTTCCTGTGGTACTGATAGTTT 57.318 37.500 0.00 0.00 0.00 2.66
167 168 7.074653 TCTTTCCTGTGGTACTGATAGTTTT 57.925 36.000 0.00 0.00 0.00 2.43
168 169 7.514721 TCTTTCCTGTGGTACTGATAGTTTTT 58.485 34.615 0.00 0.00 0.00 1.94
169 170 7.444183 TCTTTCCTGTGGTACTGATAGTTTTTG 59.556 37.037 0.00 0.00 0.00 2.44
170 171 6.182507 TCCTGTGGTACTGATAGTTTTTGT 57.817 37.500 0.00 0.00 0.00 2.83
171 172 6.597562 TCCTGTGGTACTGATAGTTTTTGTT 58.402 36.000 0.00 0.00 0.00 2.83
172 173 7.057894 TCCTGTGGTACTGATAGTTTTTGTTT 58.942 34.615 0.00 0.00 0.00 2.83
173 174 7.012894 TCCTGTGGTACTGATAGTTTTTGTTTG 59.987 37.037 0.00 0.00 0.00 2.93
174 175 6.500041 TGTGGTACTGATAGTTTTTGTTTGC 58.500 36.000 0.00 0.00 0.00 3.68
175 176 6.095580 TGTGGTACTGATAGTTTTTGTTTGCA 59.904 34.615 0.00 0.00 0.00 4.08
176 177 7.145323 GTGGTACTGATAGTTTTTGTTTGCAT 58.855 34.615 0.00 0.00 0.00 3.96
177 178 7.114811 GTGGTACTGATAGTTTTTGTTTGCATG 59.885 37.037 0.00 0.00 0.00 4.06
178 179 6.586082 GGTACTGATAGTTTTTGTTTGCATGG 59.414 38.462 0.00 0.00 0.00 3.66
179 180 6.160576 ACTGATAGTTTTTGTTTGCATGGT 57.839 33.333 0.00 0.00 0.00 3.55
180 181 6.581712 ACTGATAGTTTTTGTTTGCATGGTT 58.418 32.000 0.00 0.00 0.00 3.67
181 182 6.479660 ACTGATAGTTTTTGTTTGCATGGTTG 59.520 34.615 0.00 0.00 0.00 3.77
182 183 6.577103 TGATAGTTTTTGTTTGCATGGTTGA 58.423 32.000 0.00 0.00 0.00 3.18
183 184 7.044181 TGATAGTTTTTGTTTGCATGGTTGAA 58.956 30.769 0.00 0.00 0.00 2.69
184 185 7.714377 TGATAGTTTTTGTTTGCATGGTTGAAT 59.286 29.630 0.00 0.00 0.00 2.57
185 186 6.121613 AGTTTTTGTTTGCATGGTTGAATG 57.878 33.333 0.00 0.00 0.00 2.67
186 187 5.066246 AGTTTTTGTTTGCATGGTTGAATGG 59.934 36.000 0.00 0.00 0.00 3.16
187 188 3.834489 TTGTTTGCATGGTTGAATGGT 57.166 38.095 0.00 0.00 0.00 3.55
188 189 3.834489 TGTTTGCATGGTTGAATGGTT 57.166 38.095 0.00 0.00 0.00 3.67
189 190 3.464907 TGTTTGCATGGTTGAATGGTTG 58.535 40.909 0.00 0.00 0.00 3.77
190 191 2.166821 TTGCATGGTTGAATGGTTGC 57.833 45.000 0.00 0.00 0.00 4.17
191 192 1.046204 TGCATGGTTGAATGGTTGCA 58.954 45.000 0.00 0.00 37.73 4.08
192 193 1.624312 TGCATGGTTGAATGGTTGCAT 59.376 42.857 0.00 0.00 35.36 3.96
193 194 2.830321 TGCATGGTTGAATGGTTGCATA 59.170 40.909 0.00 0.00 35.36 3.14
194 195 3.260128 TGCATGGTTGAATGGTTGCATAA 59.740 39.130 0.00 0.00 35.36 1.90
195 196 3.618150 GCATGGTTGAATGGTTGCATAAC 59.382 43.478 0.00 0.00 36.04 1.89
196 197 4.621274 GCATGGTTGAATGGTTGCATAACT 60.621 41.667 0.00 0.00 36.99 2.24
197 198 4.517952 TGGTTGAATGGTTGCATAACTG 57.482 40.909 0.00 0.00 36.99 3.16
198 199 4.148079 TGGTTGAATGGTTGCATAACTGA 58.852 39.130 0.00 0.00 36.99 3.41
199 200 4.586421 TGGTTGAATGGTTGCATAACTGAA 59.414 37.500 0.00 0.00 36.99 3.02
200 201 5.245751 TGGTTGAATGGTTGCATAACTGAAT 59.754 36.000 0.00 0.00 36.99 2.57
201 202 6.435591 TGGTTGAATGGTTGCATAACTGAATA 59.564 34.615 0.00 0.00 36.99 1.75
202 203 7.123997 TGGTTGAATGGTTGCATAACTGAATAT 59.876 33.333 0.00 0.00 36.99 1.28
203 204 7.981225 GGTTGAATGGTTGCATAACTGAATATT 59.019 33.333 0.00 0.00 36.99 1.28
204 205 8.810427 GTTGAATGGTTGCATAACTGAATATTG 58.190 33.333 0.00 0.00 36.99 1.90
205 206 8.065473 TGAATGGTTGCATAACTGAATATTGT 57.935 30.769 0.00 0.00 36.99 2.71
206 207 8.190122 TGAATGGTTGCATAACTGAATATTGTC 58.810 33.333 0.00 0.00 36.99 3.18
207 208 6.449635 TGGTTGCATAACTGAATATTGTCC 57.550 37.500 0.00 0.00 36.99 4.02
208 209 6.186957 TGGTTGCATAACTGAATATTGTCCT 58.813 36.000 0.00 0.00 36.99 3.85
209 210 6.095300 TGGTTGCATAACTGAATATTGTCCTG 59.905 38.462 0.00 0.00 36.99 3.86
210 211 6.318648 GGTTGCATAACTGAATATTGTCCTGA 59.681 38.462 0.00 0.00 36.99 3.86
211 212 7.013655 GGTTGCATAACTGAATATTGTCCTGAT 59.986 37.037 0.00 0.00 36.99 2.90
212 213 7.500720 TGCATAACTGAATATTGTCCTGATG 57.499 36.000 0.00 0.00 0.00 3.07
213 214 6.487668 TGCATAACTGAATATTGTCCTGATGG 59.512 38.462 0.00 0.00 0.00 3.51
214 215 6.712095 GCATAACTGAATATTGTCCTGATGGA 59.288 38.462 0.00 0.00 40.69 3.41
215 216 7.392673 GCATAACTGAATATTGTCCTGATGGAT 59.607 37.037 0.00 0.00 45.29 3.41
216 217 8.944029 CATAACTGAATATTGTCCTGATGGATC 58.056 37.037 0.00 0.00 45.29 3.36
217 218 6.505048 ACTGAATATTGTCCTGATGGATCA 57.495 37.500 0.00 0.00 45.29 2.92
229 230 5.981088 CTGATGGATCAGCTATAGTCTGT 57.019 43.478 17.93 9.74 46.63 3.41
273 274 6.610075 ATGCTGAACAATCAATTTAAGGGT 57.390 33.333 0.00 0.00 34.49 4.34
280 281 8.428063 TGAACAATCAATTTAAGGGTCATGTTT 58.572 29.630 0.00 0.00 30.99 2.83
310 311 9.669353 GTCAATGGCTTAGAAATATACACAATG 57.331 33.333 0.00 0.00 0.00 2.82
349 350 5.132897 TGTTTTCAAAAATCCGCTATGCT 57.867 34.783 0.00 0.00 0.00 3.79
352 353 4.621068 TTCAAAAATCCGCTATGCTGAG 57.379 40.909 0.00 0.00 0.00 3.35
358 359 4.399004 AATCCGCTATGCTGAGATATCC 57.601 45.455 0.00 0.00 0.00 2.59
359 360 1.745653 TCCGCTATGCTGAGATATCCG 59.254 52.381 0.00 0.00 0.00 4.18
362 363 1.480137 GCTATGCTGAGATATCCGCCT 59.520 52.381 1.11 0.00 0.00 5.52
363 364 2.738000 GCTATGCTGAGATATCCGCCTG 60.738 54.545 1.11 0.00 0.00 4.85
364 365 1.346062 ATGCTGAGATATCCGCCTGT 58.654 50.000 1.11 0.00 0.00 4.00
366 367 2.316108 TGCTGAGATATCCGCCTGTAA 58.684 47.619 1.11 0.00 0.00 2.41
367 368 2.899900 TGCTGAGATATCCGCCTGTAAT 59.100 45.455 1.11 0.00 0.00 1.89
368 369 3.056536 TGCTGAGATATCCGCCTGTAATC 60.057 47.826 1.11 0.00 0.00 1.75
369 370 3.194542 GCTGAGATATCCGCCTGTAATCT 59.805 47.826 0.00 0.00 0.00 2.40
370 371 4.676723 GCTGAGATATCCGCCTGTAATCTC 60.677 50.000 0.00 0.00 41.82 2.75
371 372 4.407365 TGAGATATCCGCCTGTAATCTCA 58.593 43.478 8.78 8.78 46.27 3.27
395 396 1.269998 GCTATCCGCATTCCTCTACGT 59.730 52.381 0.00 0.00 38.92 3.57
414 415 3.116300 CGTCAACCTCATTCCACTATCG 58.884 50.000 0.00 0.00 0.00 2.92
417 418 1.794714 ACCTCATTCCACTATCGCCT 58.205 50.000 0.00 0.00 0.00 5.52
418 419 1.414181 ACCTCATTCCACTATCGCCTG 59.586 52.381 0.00 0.00 0.00 4.85
425 430 0.247736 CCACTATCGCCTGGCTATCC 59.752 60.000 17.92 0.00 0.00 2.59
430 435 0.972983 ATCGCCTGGCTATCCGCTAT 60.973 55.000 17.92 0.00 39.13 2.97
433 438 1.067142 CGCCTGGCTATCCGCTATTTA 60.067 52.381 17.92 0.00 39.13 1.40
438 443 4.083271 CCTGGCTATCCGCTATTTAAAAGC 60.083 45.833 10.52 10.52 39.13 3.51
447 452 3.119137 CGCTATTTAAAAGCTTGGCCCTT 60.119 43.478 0.00 0.00 37.85 3.95
469 474 8.960591 CCCTTGATTGTTCAAATCTACTTGTAT 58.039 33.333 0.30 0.00 41.22 2.29
557 576 2.622942 GACTTCTGGCCATTGACAAACA 59.377 45.455 5.51 0.00 0.00 2.83
650 670 6.605471 ACCTCCATATTCATACGAAGCATA 57.395 37.500 0.00 0.00 33.74 3.14
705 725 6.600882 ACGACTTCTACTAAAATTCCTCCA 57.399 37.500 0.00 0.00 0.00 3.86
720 740 3.565307 TCCTCCAAATAACCATCCATGC 58.435 45.455 0.00 0.00 0.00 4.06
738 758 5.067954 CCATGCCATGAATCAGACAGATAA 58.932 41.667 6.18 0.00 35.39 1.75
773 793 2.660064 CCTCCCTCCAACCTCCACG 61.660 68.421 0.00 0.00 0.00 4.94
774 794 2.606519 TCCCTCCAACCTCCACGG 60.607 66.667 0.00 0.00 39.35 4.94
979 2195 1.571773 CCCCTTCTCCCCCGTCAATT 61.572 60.000 0.00 0.00 0.00 2.32
1188 2404 2.267961 CAACCGCCCCTACCACTC 59.732 66.667 0.00 0.00 0.00 3.51
1199 2415 1.751924 CCTACCACTCCTTCCTTCTCG 59.248 57.143 0.00 0.00 0.00 4.04
1201 2417 2.011122 ACCACTCCTTCCTTCTCGAA 57.989 50.000 0.00 0.00 0.00 3.71
1205 2421 3.129638 CCACTCCTTCCTTCTCGAACTAG 59.870 52.174 0.00 0.00 0.00 2.57
1232 2448 1.290203 CGGATTCCATGGTCGTTCTG 58.710 55.000 12.58 6.09 0.00 3.02
1253 2470 3.799755 GCCGTCGCGCCAAAGATT 61.800 61.111 0.00 0.00 0.00 2.40
1254 2471 2.867472 CCGTCGCGCCAAAGATTT 59.133 55.556 0.00 0.00 0.00 2.17
1255 2472 1.511887 CCGTCGCGCCAAAGATTTG 60.512 57.895 0.00 0.00 37.90 2.32
1265 2482 4.201910 GCGCCAAAGATTTGTCAGCTAATA 60.202 41.667 0.00 0.00 36.45 0.98
1273 2490 1.100510 TGTCAGCTAATACGGTCGCT 58.899 50.000 0.00 0.00 0.00 4.93
1300 2517 3.737122 GGACTTCCCTGGGGGTAC 58.263 66.667 14.00 9.46 44.74 3.34
1301 2518 1.229723 GGACTTCCCTGGGGGTACA 60.230 63.158 14.00 0.00 44.74 2.90
1302 2519 0.623617 GGACTTCCCTGGGGGTACAT 60.624 60.000 14.00 0.00 44.74 2.29
1303 2520 1.344701 GGACTTCCCTGGGGGTACATA 60.345 57.143 14.00 0.00 44.74 2.29
1304 2521 2.699281 GGACTTCCCTGGGGGTACATAT 60.699 54.545 14.00 0.00 44.74 1.78
1328 2545 0.112606 TAGGCTACCAGAGGGATCGG 59.887 60.000 0.00 0.00 38.05 4.18
1336 2553 3.178865 ACCAGAGGGATCGGTTTTTAGA 58.821 45.455 0.00 0.00 38.05 2.10
1339 2556 1.931841 GAGGGATCGGTTTTTAGACGC 59.068 52.381 0.00 0.00 0.00 5.19
1347 2564 2.419021 CGGTTTTTAGACGCAGGGGATA 60.419 50.000 0.00 0.00 0.00 2.59
1445 2662 0.869880 GTGGTTCGTTTGCTTGTGCC 60.870 55.000 0.00 0.00 38.71 5.01
1461 2683 0.964700 TGCCGTTGATTTTCCATGCA 59.035 45.000 0.00 0.00 0.00 3.96
1538 2761 4.020543 TGATGTTTGGGTAGGGTTTATGC 58.979 43.478 0.00 0.00 0.00 3.14
1541 2764 3.181427 TGTTTGGGTAGGGTTTATGCTGT 60.181 43.478 0.00 0.00 0.00 4.40
1598 2825 2.659428 CCCCCTCAAAAGAAGGCTATG 58.341 52.381 0.00 0.00 32.15 2.23
1601 2828 3.308402 CCCCTCAAAAGAAGGCTATGTCA 60.308 47.826 0.00 0.00 32.15 3.58
1617 2844 3.576078 TGTCACCAAATCTGTTCCTGT 57.424 42.857 0.00 0.00 0.00 4.00
1769 3034 2.887783 TGCCTATTTGTTTTTCGCTCCA 59.112 40.909 0.00 0.00 0.00 3.86
1798 3063 6.404293 GGTGTATCCATGTATTGTTTGGTGAC 60.404 42.308 0.00 0.00 35.97 3.67
1912 3177 2.233676 TGATGAAAGCTAGCTTCGTGGA 59.766 45.455 29.42 11.75 34.84 4.02
1914 3179 3.334583 TGAAAGCTAGCTTCGTGGAAT 57.665 42.857 29.42 12.76 34.84 3.01
1918 3183 5.703592 TGAAAGCTAGCTTCGTGGAATTTAA 59.296 36.000 29.42 1.62 34.84 1.52
1932 3197 7.827236 TCGTGGAATTTAACTTTATCTGGACAT 59.173 33.333 0.00 0.00 0.00 3.06
1956 3221 2.947448 AAAGAATTTCGCTGGGCATC 57.053 45.000 0.00 0.00 27.08 3.91
1957 3222 1.838112 AAGAATTTCGCTGGGCATCA 58.162 45.000 0.00 0.00 0.00 3.07
1961 3226 1.386533 ATTTCGCTGGGCATCAGAAG 58.613 50.000 10.03 3.90 46.18 2.85
1962 3227 0.324614 TTTCGCTGGGCATCAGAAGA 59.675 50.000 10.03 5.86 46.18 2.87
1963 3228 0.107993 TTCGCTGGGCATCAGAAGAG 60.108 55.000 10.03 0.00 46.18 2.85
1964 3229 1.523258 CGCTGGGCATCAGAAGAGG 60.523 63.158 10.03 0.00 46.18 3.69
1968 3233 1.148048 GGGCATCAGAAGAGGCTCC 59.852 63.158 11.71 0.00 45.99 4.70
1969 3234 1.344191 GGGCATCAGAAGAGGCTCCT 61.344 60.000 11.71 0.00 45.99 3.69
1970 3235 2.867673 GGGCATCAGAAGAGGCTCCTT 61.868 57.143 11.71 4.88 45.99 3.36
1971 3236 4.343602 GGGCATCAGAAGAGGCTCCTTT 62.344 54.545 11.71 0.00 45.99 3.11
1972 3237 5.778177 GGGCATCAGAAGAGGCTCCTTTT 62.778 52.174 11.71 0.00 45.99 2.27
1974 3239 3.947868 CATCAGAAGAGGCTCCTTTTGA 58.052 45.455 11.71 14.77 40.18 2.69
1975 3240 4.525024 CATCAGAAGAGGCTCCTTTTGAT 58.475 43.478 11.71 16.17 44.06 2.57
1976 3241 4.647564 TCAGAAGAGGCTCCTTTTGATT 57.352 40.909 11.71 0.00 33.89 2.57
1977 3242 4.330250 TCAGAAGAGGCTCCTTTTGATTG 58.670 43.478 11.71 0.00 33.89 2.67
1978 3243 3.087781 AGAAGAGGCTCCTTTTGATTGC 58.912 45.455 11.71 0.00 0.00 3.56
1979 3244 2.895242 AGAGGCTCCTTTTGATTGCT 57.105 45.000 11.71 0.00 0.00 3.91
1980 3245 3.166560 AGAGGCTCCTTTTGATTGCTT 57.833 42.857 11.71 0.00 0.00 3.91
1989 3254 5.600696 TCCTTTTGATTGCTTTTGACCTTC 58.399 37.500 0.00 0.00 0.00 3.46
1990 3255 5.128499 TCCTTTTGATTGCTTTTGACCTTCA 59.872 36.000 0.00 0.00 0.00 3.02
2010 3275 4.044308 TCATATGGGCTGTTTCCTTCCTA 58.956 43.478 2.13 0.00 0.00 2.94
2013 3278 1.340991 TGGGCTGTTTCCTTCCTATGC 60.341 52.381 0.00 0.00 0.00 3.14
2025 3290 2.799126 TCCTATGCCGTTTGTTGGAT 57.201 45.000 0.00 0.00 0.00 3.41
2033 3298 5.554822 TGCCGTTTGTTGGATCTAATAAC 57.445 39.130 0.38 5.38 0.00 1.89
2044 3309 7.282224 TGTTGGATCTAATAACGAGAAAATGGG 59.718 37.037 0.00 0.00 0.00 4.00
2050 3315 7.335627 TCTAATAACGAGAAAATGGGTGACAT 58.664 34.615 0.00 0.00 43.07 3.06
2057 3322 6.038603 ACGAGAAAATGGGTGACATATTGATG 59.961 38.462 0.00 0.00 39.40 3.07
2059 3324 7.226523 CGAGAAAATGGGTGACATATTGATGTA 59.773 37.037 0.00 0.00 46.64 2.29
2060 3325 9.071276 GAGAAAATGGGTGACATATTGATGTAT 57.929 33.333 0.00 0.00 46.64 2.29
2178 3443 9.832445 TCCGATCTTTAGCTTTAGATGTATTTT 57.168 29.630 13.25 0.00 31.46 1.82
2179 3444 9.869844 CCGATCTTTAGCTTTAGATGTATTTTG 57.130 33.333 13.25 0.00 31.46 2.44
2242 3513 7.849804 TGACTATTGTTTCTGCTAAGAATCC 57.150 36.000 0.00 0.00 42.04 3.01
2284 3556 5.031066 AGAATTACCGGCTGCATAGTTTA 57.969 39.130 0.00 0.00 0.00 2.01
2320 3592 8.243961 TCAGGAAACCAGTTTTGAATTTGATA 57.756 30.769 0.00 0.00 32.11 2.15
2629 3908 8.829373 ATTTTCTGGTTTTAGGCTGATTAGAT 57.171 30.769 0.00 0.00 0.00 1.98
2739 4026 6.817184 TGGTATAGAACTGCAGATAAAGGAC 58.183 40.000 23.35 9.47 0.00 3.85
3058 4345 1.203038 TGGTGATGGTGAATGCCAACT 60.203 47.619 0.00 0.00 42.48 3.16
3137 4424 5.832539 ACTATAGGCCTCTATGCACAAAT 57.167 39.130 9.68 0.00 36.87 2.32
3156 4443 5.957774 ACAAATATGTTAATGGTGGCCTCTT 59.042 36.000 3.32 0.00 35.91 2.85
3190 4477 3.253188 TGCCTCATTGTTAAGCTGTGAAC 59.747 43.478 0.00 0.00 0.00 3.18
3311 4606 8.293699 ACCCACTTCAATATTAAATCCTTCAC 57.706 34.615 0.00 0.00 0.00 3.18
3360 4655 5.952347 TCATTCTTACTGCTCCTTAGACTCA 59.048 40.000 0.00 0.00 0.00 3.41
3424 4727 4.999311 GGACCGAATTAACCTGTTGTTAGT 59.001 41.667 0.00 0.00 40.42 2.24
3553 4857 2.091885 ACTGTCATTCCCACTTTGGTGT 60.092 45.455 0.00 0.00 41.53 4.16
3587 4891 0.107643 TCATTCGTTGCACCCTGTCA 59.892 50.000 0.00 0.00 0.00 3.58
3651 4957 6.246163 AGGTTTACTAGTGGCTAAGCAAAAT 58.754 36.000 5.39 0.00 0.00 1.82
3655 4961 4.651778 ACTAGTGGCTAAGCAAAATGTCA 58.348 39.130 0.00 0.00 0.00 3.58
3670 4976 6.089954 GCAAAATGTCAACTGATTTTAGGAGC 59.910 38.462 0.00 0.00 31.92 4.70
3684 4990 5.447624 TTTAGGAGCTAACAACTTTTGGC 57.552 39.130 0.00 0.00 33.34 4.52
3829 5135 1.195115 CGGATGGTCTCCTCTTTGGA 58.805 55.000 0.00 0.00 42.47 3.53
3868 5174 4.101114 TGTTCTTCTCTTATGTGGGCCTA 58.899 43.478 4.53 0.00 0.00 3.93
3883 5189 0.179059 GCCTAGCTTCAGGAAGGAGC 60.179 60.000 6.73 0.00 38.00 4.70
3928 5234 3.328931 TGAAGAGGGATATCATTCCTGCC 59.671 47.826 4.83 0.00 35.97 4.85
4006 5312 1.290203 CCGTGCGATATCAACTGCTT 58.710 50.000 3.12 0.00 0.00 3.91
4048 5354 4.127171 TGTTAGACAGCTGTTTCTTGTCC 58.873 43.478 22.65 5.23 0.00 4.02
4142 5448 2.517321 GAGCAACGCTTGATCTGAAC 57.483 50.000 8.19 0.00 42.51 3.18
4143 5449 1.800586 GAGCAACGCTTGATCTGAACA 59.199 47.619 8.19 0.00 42.51 3.18
4144 5450 2.417933 GAGCAACGCTTGATCTGAACAT 59.582 45.455 8.19 0.00 42.51 2.71
4145 5451 2.161012 AGCAACGCTTGATCTGAACATG 59.839 45.455 0.00 0.00 33.89 3.21
4146 5452 2.160219 GCAACGCTTGATCTGAACATGA 59.840 45.455 0.00 0.00 0.00 3.07
4147 5453 3.181503 GCAACGCTTGATCTGAACATGAT 60.182 43.478 0.00 0.00 0.00 2.45
4148 5454 4.585364 CAACGCTTGATCTGAACATGATC 58.415 43.478 0.00 0.00 40.34 2.92
4242 5556 0.788391 GGCTGTTTACGTGGAGTTCG 59.212 55.000 0.00 0.00 0.00 3.95
4291 5607 5.413523 TGTCATGTGGAGATGATCTTTGTTG 59.586 40.000 0.00 0.00 34.86 3.33
4346 5667 9.429600 CTCTCGTTTAACTTTTTGTTTCGTAAT 57.570 29.630 0.00 0.00 39.89 1.89
4348 5669 9.429600 CTCGTTTAACTTTTTGTTTCGTAATCT 57.570 29.630 0.00 0.00 39.89 2.40
4382 5707 1.512926 CTGTTTAACCTGCAGAGCGT 58.487 50.000 17.39 0.92 32.39 5.07
4403 5728 8.193250 AGCGTGTATTTTTAACGAGTATTCAT 57.807 30.769 0.00 0.00 39.64 2.57
4521 6003 1.719709 GTTCATTCGCTTACGGGCC 59.280 57.895 0.00 0.00 40.63 5.80
4533 6015 1.700955 TACGGGCCAGATAGAGGTTC 58.299 55.000 10.86 0.00 0.00 3.62
4535 6017 0.676736 CGGGCCAGATAGAGGTTCTC 59.323 60.000 4.39 0.00 0.00 2.87
4547 6030 4.070552 GTTCTCGGGTGAGCCGCT 62.071 66.667 19.57 0.00 42.26 5.52
4616 6142 2.753029 GCCTCAGCCTTCAGGTGT 59.247 61.111 0.00 0.00 44.62 4.16
4711 7004 7.651808 TGTGAGCTAATTTCCTTTTTCTCAAG 58.348 34.615 0.00 0.00 32.08 3.02
4739 7032 2.711547 GGGTATCCTTGGCCTCTACATT 59.288 50.000 3.32 0.00 0.00 2.71
4748 7041 2.216898 GGCCTCTACATTGAGTGATGC 58.783 52.381 0.00 0.00 32.50 3.91
4749 7042 2.420547 GGCCTCTACATTGAGTGATGCA 60.421 50.000 0.00 0.00 32.50 3.96
4762 7055 2.049888 TGATGCACACAACCTGAACA 57.950 45.000 0.00 0.00 0.00 3.18
4765 7058 4.140536 TGATGCACACAACCTGAACATAA 58.859 39.130 0.00 0.00 0.00 1.90
4908 7202 6.656693 TGAAGAAATTTCAAGAGATCACTCCC 59.343 38.462 19.99 0.00 43.53 4.30
4910 7204 6.729428 AGAAATTTCAAGAGATCACTCCCAT 58.271 36.000 19.99 0.00 43.53 4.00
4911 7205 7.180663 AGAAATTTCAAGAGATCACTCCCATT 58.819 34.615 19.99 0.00 43.53 3.16
4912 7206 6.770746 AATTTCAAGAGATCACTCCCATTG 57.229 37.500 0.00 0.00 43.53 2.82
4916 7210 1.489649 AGAGATCACTCCCATTGGCTG 59.510 52.381 0.00 0.00 43.53 4.85
4922 7216 2.676121 TCCCATTGGCTGCAACCG 60.676 61.111 0.85 0.00 0.00 4.44
4928 7222 0.250901 ATTGGCTGCAACCGAAGACT 60.251 50.000 0.00 0.00 0.00 3.24
4954 7250 1.445095 CCTGATCCTCCTCCTTGCG 59.555 63.158 0.00 0.00 0.00 4.85
4961 7257 3.028094 TCCTCCTCCTTGCGTAATAGT 57.972 47.619 0.00 0.00 0.00 2.12
4962 7258 3.371965 TCCTCCTCCTTGCGTAATAGTT 58.628 45.455 0.00 0.00 0.00 2.24
4965 7261 4.202264 CCTCCTCCTTGCGTAATAGTTGAT 60.202 45.833 0.00 0.00 0.00 2.57
4986 7282 5.132648 TGATGGCCTTGAAGATAACCTACAT 59.867 40.000 3.32 0.00 0.00 2.29
5042 7347 3.731652 TGTTCCAAATGGCTCAAAGTG 57.268 42.857 0.00 0.00 34.44 3.16
5045 7350 4.202141 TGTTCCAAATGGCTCAAAGTGAAG 60.202 41.667 0.00 0.00 34.44 3.02
5063 7368 0.467290 AGTGCAAATTCCCACACGGT 60.467 50.000 10.06 0.00 38.08 4.83
5064 7369 0.318614 GTGCAAATTCCCACACGGTG 60.319 55.000 6.58 6.58 32.37 4.94
5065 7370 0.466372 TGCAAATTCCCACACGGTGA 60.466 50.000 16.29 0.00 35.23 4.02
5066 7371 0.039527 GCAAATTCCCACACGGTGAC 60.040 55.000 16.29 0.00 35.23 3.67
5067 7372 1.313772 CAAATTCCCACACGGTGACA 58.686 50.000 16.29 0.00 35.23 3.58
5068 7373 1.001815 CAAATTCCCACACGGTGACAC 60.002 52.381 16.29 0.00 35.23 3.67
5069 7374 0.882927 AATTCCCACACGGTGACACG 60.883 55.000 16.29 0.12 35.23 4.49
5070 7375 2.725203 ATTCCCACACGGTGACACGG 62.725 60.000 16.29 11.29 35.23 4.94
5089 7394 2.094700 CGGATCCGAGACTTCAACTTGA 60.095 50.000 30.62 0.00 42.83 3.02
5097 7402 4.387256 CGAGACTTCAACTTGAGATTCACC 59.613 45.833 0.00 0.00 0.00 4.02
5098 7403 4.646572 AGACTTCAACTTGAGATTCACCC 58.353 43.478 0.00 0.00 0.00 4.61
5113 7419 2.414612 TCACCCCACTAACCAGTTTCT 58.585 47.619 0.00 0.00 30.46 2.52
5115 7421 2.105821 CACCCCACTAACCAGTTTCTGA 59.894 50.000 0.00 0.00 32.44 3.27
5117 7423 3.146847 CCCCACTAACCAGTTTCTGAAC 58.853 50.000 0.00 0.00 32.44 3.18
5127 7433 6.963049 ACCAGTTTCTGAACATATTCGTAC 57.037 37.500 0.00 0.00 37.69 3.67
5133 7439 4.916870 TCTGAACATATTCGTACCACTCG 58.083 43.478 0.00 0.00 37.69 4.18
5135 7441 4.417506 TGAACATATTCGTACCACTCGTG 58.582 43.478 0.00 0.00 37.69 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.249320 CCTGATGATGGTCGCTATGTTTG 59.751 47.826 0.00 0.00 0.00 2.93
1 2 3.470709 CCTGATGATGGTCGCTATGTTT 58.529 45.455 0.00 0.00 0.00 2.83
2 3 2.224378 CCCTGATGATGGTCGCTATGTT 60.224 50.000 0.00 0.00 0.00 2.71
3 4 1.345741 CCCTGATGATGGTCGCTATGT 59.654 52.381 0.00 0.00 0.00 2.29
4 5 1.620323 TCCCTGATGATGGTCGCTATG 59.380 52.381 0.00 0.00 0.00 2.23
5 6 1.898472 CTCCCTGATGATGGTCGCTAT 59.102 52.381 0.00 0.00 0.00 2.97
6 7 1.332195 CTCCCTGATGATGGTCGCTA 58.668 55.000 0.00 0.00 0.00 4.26
7 8 1.406065 CCTCCCTGATGATGGTCGCT 61.406 60.000 0.00 0.00 0.00 4.93
8 9 1.070445 CCTCCCTGATGATGGTCGC 59.930 63.158 0.00 0.00 0.00 5.19
9 10 1.070445 GCCTCCCTGATGATGGTCG 59.930 63.158 0.00 0.00 0.00 4.79
10 11 1.348008 TGGCCTCCCTGATGATGGTC 61.348 60.000 3.32 0.00 0.00 4.02
11 12 1.308128 TGGCCTCCCTGATGATGGT 60.308 57.895 3.32 0.00 0.00 3.55
12 13 1.058428 TCTGGCCTCCCTGATGATGG 61.058 60.000 3.32 0.00 34.54 3.51
13 14 0.108207 GTCTGGCCTCCCTGATGATG 59.892 60.000 3.32 0.00 40.61 3.07
14 15 1.406065 CGTCTGGCCTCCCTGATGAT 61.406 60.000 3.32 0.00 44.51 2.45
15 16 2.060383 CGTCTGGCCTCCCTGATGA 61.060 63.158 3.32 0.00 44.51 2.92
16 17 1.617018 TTCGTCTGGCCTCCCTGATG 61.617 60.000 3.32 0.43 43.64 3.07
17 18 1.306141 TTCGTCTGGCCTCCCTGAT 60.306 57.895 3.32 0.00 40.61 2.90
18 19 1.984570 CTTCGTCTGGCCTCCCTGA 60.985 63.158 3.32 0.00 36.81 3.86
19 20 1.544825 TTCTTCGTCTGGCCTCCCTG 61.545 60.000 3.32 0.00 0.00 4.45
20 21 0.836400 TTTCTTCGTCTGGCCTCCCT 60.836 55.000 3.32 0.00 0.00 4.20
21 22 0.036306 TTTTCTTCGTCTGGCCTCCC 59.964 55.000 3.32 0.00 0.00 4.30
22 23 1.892209 TTTTTCTTCGTCTGGCCTCC 58.108 50.000 3.32 0.00 0.00 4.30
23 24 3.074412 TGATTTTTCTTCGTCTGGCCTC 58.926 45.455 3.32 0.00 0.00 4.70
24 25 3.140325 TGATTTTTCTTCGTCTGGCCT 57.860 42.857 3.32 0.00 0.00 5.19
25 26 4.168760 CAATGATTTTTCTTCGTCTGGCC 58.831 43.478 0.00 0.00 0.00 5.36
26 27 3.609807 GCAATGATTTTTCTTCGTCTGGC 59.390 43.478 0.00 0.00 0.00 4.85
27 28 5.051891 AGCAATGATTTTTCTTCGTCTGG 57.948 39.130 0.00 0.00 0.00 3.86
28 29 7.301054 AGTTAGCAATGATTTTTCTTCGTCTG 58.699 34.615 0.00 0.00 0.00 3.51
29 30 7.440523 AGTTAGCAATGATTTTTCTTCGTCT 57.559 32.000 0.00 0.00 0.00 4.18
30 31 8.443937 ACTAGTTAGCAATGATTTTTCTTCGTC 58.556 33.333 0.00 0.00 0.00 4.20
31 32 8.324163 ACTAGTTAGCAATGATTTTTCTTCGT 57.676 30.769 0.00 0.00 0.00 3.85
32 33 9.055248 CAACTAGTTAGCAATGATTTTTCTTCG 57.945 33.333 8.04 0.00 0.00 3.79
33 34 9.899226 ACAACTAGTTAGCAATGATTTTTCTTC 57.101 29.630 8.04 0.00 0.00 2.87
34 35 9.683069 CACAACTAGTTAGCAATGATTTTTCTT 57.317 29.630 8.04 0.00 0.00 2.52
35 36 9.066892 TCACAACTAGTTAGCAATGATTTTTCT 57.933 29.630 8.04 0.00 0.00 2.52
36 37 9.846248 ATCACAACTAGTTAGCAATGATTTTTC 57.154 29.630 8.04 0.00 0.00 2.29
41 42 8.562892 GCATAATCACAACTAGTTAGCAATGAT 58.437 33.333 8.04 9.59 0.00 2.45
42 43 7.552330 TGCATAATCACAACTAGTTAGCAATGA 59.448 33.333 8.04 7.79 0.00 2.57
43 44 7.641411 GTGCATAATCACAACTAGTTAGCAATG 59.359 37.037 8.04 8.69 36.97 2.82
44 45 7.554118 AGTGCATAATCACAACTAGTTAGCAAT 59.446 33.333 8.04 5.44 39.35 3.56
45 46 6.878923 AGTGCATAATCACAACTAGTTAGCAA 59.121 34.615 8.04 0.00 39.35 3.91
46 47 6.406370 AGTGCATAATCACAACTAGTTAGCA 58.594 36.000 8.04 6.04 39.35 3.49
47 48 6.758886 AGAGTGCATAATCACAACTAGTTAGC 59.241 38.462 8.04 3.67 39.35 3.09
48 49 7.976175 TGAGAGTGCATAATCACAACTAGTTAG 59.024 37.037 8.04 4.36 39.35 2.34
49 50 7.836842 TGAGAGTGCATAATCACAACTAGTTA 58.163 34.615 8.04 0.00 39.35 2.24
50 51 6.701340 TGAGAGTGCATAATCACAACTAGTT 58.299 36.000 1.12 1.12 39.35 2.24
51 52 6.286240 TGAGAGTGCATAATCACAACTAGT 57.714 37.500 0.00 0.00 39.35 2.57
52 53 8.877808 TTATGAGAGTGCATAATCACAACTAG 57.122 34.615 0.00 0.00 39.35 2.57
53 54 7.439356 GCTTATGAGAGTGCATAATCACAACTA 59.561 37.037 0.00 0.00 39.31 2.24
54 55 6.259608 GCTTATGAGAGTGCATAATCACAACT 59.740 38.462 0.00 0.00 39.31 3.16
55 56 6.037500 TGCTTATGAGAGTGCATAATCACAAC 59.962 38.462 0.00 0.00 39.31 3.32
56 57 6.037500 GTGCTTATGAGAGTGCATAATCACAA 59.962 38.462 18.51 0.00 46.58 3.33
57 58 5.525012 GTGCTTATGAGAGTGCATAATCACA 59.475 40.000 18.51 0.00 46.58 3.58
58 59 5.983475 GTGCTTATGAGAGTGCATAATCAC 58.017 41.667 12.40 12.40 44.02 3.06
59 60 5.673514 TGTGCTTATGAGAGTGCATAATCA 58.326 37.500 0.00 0.00 39.31 2.57
60 61 6.609237 TTGTGCTTATGAGAGTGCATAATC 57.391 37.500 0.00 0.00 39.31 1.75
61 62 7.578310 ATTTGTGCTTATGAGAGTGCATAAT 57.422 32.000 0.00 0.00 39.31 1.28
62 63 7.395190 AATTTGTGCTTATGAGAGTGCATAA 57.605 32.000 0.00 0.00 38.15 1.90
63 64 7.395190 AAATTTGTGCTTATGAGAGTGCATA 57.605 32.000 0.00 0.00 37.76 3.14
64 65 5.909621 AATTTGTGCTTATGAGAGTGCAT 57.090 34.783 0.00 0.00 37.76 3.96
65 66 5.710513 AAATTTGTGCTTATGAGAGTGCA 57.289 34.783 0.00 0.00 0.00 4.57
66 67 5.164022 GCAAAATTTGTGCTTATGAGAGTGC 60.164 40.000 7.60 3.05 39.00 4.40
67 68 5.346822 GGCAAAATTTGTGCTTATGAGAGTG 59.653 40.000 11.24 0.57 41.88 3.51
68 69 5.244626 AGGCAAAATTTGTGCTTATGAGAGT 59.755 36.000 11.24 0.00 41.88 3.24
69 70 5.717119 AGGCAAAATTTGTGCTTATGAGAG 58.283 37.500 11.24 0.00 41.88 3.20
70 71 5.477984 AGAGGCAAAATTTGTGCTTATGAGA 59.522 36.000 11.24 0.00 41.88 3.27
71 72 5.575606 CAGAGGCAAAATTTGTGCTTATGAG 59.424 40.000 11.68 0.00 41.31 2.90
72 73 5.472148 CAGAGGCAAAATTTGTGCTTATGA 58.528 37.500 11.68 0.00 41.31 2.15
73 74 4.092383 GCAGAGGCAAAATTTGTGCTTATG 59.908 41.667 12.52 12.52 41.61 1.90
74 75 4.248058 GCAGAGGCAAAATTTGTGCTTAT 58.752 39.130 11.24 0.00 41.88 1.73
75 76 3.554752 GGCAGAGGCAAAATTTGTGCTTA 60.555 43.478 15.36 0.00 43.71 3.09
76 77 2.486918 GCAGAGGCAAAATTTGTGCTT 58.513 42.857 11.24 3.57 41.88 3.91
77 78 1.270465 GGCAGAGGCAAAATTTGTGCT 60.270 47.619 15.36 5.50 43.71 4.40
78 79 1.150827 GGCAGAGGCAAAATTTGTGC 58.849 50.000 7.60 8.75 43.71 4.57
79 80 2.036217 TGAGGCAGAGGCAAAATTTGTG 59.964 45.455 7.60 0.00 43.71 3.33
80 81 2.318908 TGAGGCAGAGGCAAAATTTGT 58.681 42.857 7.60 0.00 43.71 2.83
81 82 3.389925 TTGAGGCAGAGGCAAAATTTG 57.610 42.857 0.57 0.57 43.71 2.32
82 83 3.389002 AGTTTGAGGCAGAGGCAAAATTT 59.611 39.130 0.00 0.00 43.71 1.82
83 84 2.967887 AGTTTGAGGCAGAGGCAAAATT 59.032 40.909 0.00 0.00 43.71 1.82
84 85 2.601905 AGTTTGAGGCAGAGGCAAAAT 58.398 42.857 0.00 0.00 43.71 1.82
85 86 2.071778 AGTTTGAGGCAGAGGCAAAA 57.928 45.000 0.00 0.00 43.71 2.44
86 87 2.949177 TAGTTTGAGGCAGAGGCAAA 57.051 45.000 0.00 0.00 43.71 3.68
87 88 2.305635 TGATAGTTTGAGGCAGAGGCAA 59.694 45.455 0.00 0.00 43.71 4.52
88 89 1.908619 TGATAGTTTGAGGCAGAGGCA 59.091 47.619 0.00 0.00 43.71 4.75
89 90 2.698855 TGATAGTTTGAGGCAGAGGC 57.301 50.000 0.00 0.00 40.13 4.70
90 91 4.148128 ACATGATAGTTTGAGGCAGAGG 57.852 45.455 0.00 0.00 0.00 3.69
91 92 5.664457 TGTACATGATAGTTTGAGGCAGAG 58.336 41.667 0.00 0.00 0.00 3.35
92 93 5.675684 TGTACATGATAGTTTGAGGCAGA 57.324 39.130 0.00 0.00 0.00 4.26
93 94 6.108687 TCTTGTACATGATAGTTTGAGGCAG 58.891 40.000 7.33 0.00 0.00 4.85
94 95 6.048732 TCTTGTACATGATAGTTTGAGGCA 57.951 37.500 7.33 0.00 0.00 4.75
95 96 6.985188 TTCTTGTACATGATAGTTTGAGGC 57.015 37.500 11.84 0.00 0.00 4.70
96 97 7.390440 TGGTTTCTTGTACATGATAGTTTGAGG 59.610 37.037 11.84 0.00 0.00 3.86
97 98 8.322906 TGGTTTCTTGTACATGATAGTTTGAG 57.677 34.615 11.84 0.00 0.00 3.02
98 99 8.684386 TTGGTTTCTTGTACATGATAGTTTGA 57.316 30.769 11.84 0.00 0.00 2.69
99 100 9.912634 ATTTGGTTTCTTGTACATGATAGTTTG 57.087 29.630 11.84 0.00 0.00 2.93
131 132 9.444600 GTACCACAGGAAAGATAGTATCAAAAA 57.555 33.333 12.66 0.00 0.00 1.94
132 133 8.822805 AGTACCACAGGAAAGATAGTATCAAAA 58.177 33.333 12.66 0.00 0.00 2.44
133 134 8.258007 CAGTACCACAGGAAAGATAGTATCAAA 58.742 37.037 12.66 0.00 0.00 2.69
134 135 7.618117 TCAGTACCACAGGAAAGATAGTATCAA 59.382 37.037 12.66 0.00 0.00 2.57
135 136 7.123383 TCAGTACCACAGGAAAGATAGTATCA 58.877 38.462 12.66 0.00 0.00 2.15
136 137 7.584122 TCAGTACCACAGGAAAGATAGTATC 57.416 40.000 1.55 1.55 0.00 2.24
137 138 9.303116 CTATCAGTACCACAGGAAAGATAGTAT 57.697 37.037 0.00 0.00 32.79 2.12
138 139 8.280084 ACTATCAGTACCACAGGAAAGATAGTA 58.720 37.037 9.31 0.00 42.80 1.82
139 140 7.126733 ACTATCAGTACCACAGGAAAGATAGT 58.873 38.462 0.00 0.00 40.98 2.12
140 141 7.589958 ACTATCAGTACCACAGGAAAGATAG 57.410 40.000 0.00 0.00 39.50 2.08
141 142 7.973048 AACTATCAGTACCACAGGAAAGATA 57.027 36.000 0.00 0.00 0.00 1.98
142 143 6.875972 AACTATCAGTACCACAGGAAAGAT 57.124 37.500 0.00 0.00 0.00 2.40
143 144 6.681729 AAACTATCAGTACCACAGGAAAGA 57.318 37.500 0.00 0.00 0.00 2.52
144 145 7.228706 ACAAAAACTATCAGTACCACAGGAAAG 59.771 37.037 0.00 0.00 0.00 2.62
145 146 7.057894 ACAAAAACTATCAGTACCACAGGAAA 58.942 34.615 0.00 0.00 0.00 3.13
146 147 6.597562 ACAAAAACTATCAGTACCACAGGAA 58.402 36.000 0.00 0.00 0.00 3.36
147 148 6.182507 ACAAAAACTATCAGTACCACAGGA 57.817 37.500 0.00 0.00 0.00 3.86
148 149 6.877611 AACAAAAACTATCAGTACCACAGG 57.122 37.500 0.00 0.00 0.00 4.00
149 150 6.636850 GCAAACAAAAACTATCAGTACCACAG 59.363 38.462 0.00 0.00 0.00 3.66
150 151 6.095580 TGCAAACAAAAACTATCAGTACCACA 59.904 34.615 0.00 0.00 0.00 4.17
151 152 6.500041 TGCAAACAAAAACTATCAGTACCAC 58.500 36.000 0.00 0.00 0.00 4.16
152 153 6.701145 TGCAAACAAAAACTATCAGTACCA 57.299 33.333 0.00 0.00 0.00 3.25
153 154 6.586082 CCATGCAAACAAAAACTATCAGTACC 59.414 38.462 0.00 0.00 0.00 3.34
154 155 7.145323 ACCATGCAAACAAAAACTATCAGTAC 58.855 34.615 0.00 0.00 0.00 2.73
155 156 7.283625 ACCATGCAAACAAAAACTATCAGTA 57.716 32.000 0.00 0.00 0.00 2.74
156 157 6.160576 ACCATGCAAACAAAAACTATCAGT 57.839 33.333 0.00 0.00 0.00 3.41
157 158 6.700960 TCAACCATGCAAACAAAAACTATCAG 59.299 34.615 0.00 0.00 0.00 2.90
158 159 6.577103 TCAACCATGCAAACAAAAACTATCA 58.423 32.000 0.00 0.00 0.00 2.15
159 160 7.475771 TTCAACCATGCAAACAAAAACTATC 57.524 32.000 0.00 0.00 0.00 2.08
160 161 7.041235 CCATTCAACCATGCAAACAAAAACTAT 60.041 33.333 0.00 0.00 0.00 2.12
161 162 6.259608 CCATTCAACCATGCAAACAAAAACTA 59.740 34.615 0.00 0.00 0.00 2.24
162 163 5.066246 CCATTCAACCATGCAAACAAAAACT 59.934 36.000 0.00 0.00 0.00 2.66
163 164 5.163673 ACCATTCAACCATGCAAACAAAAAC 60.164 36.000 0.00 0.00 0.00 2.43
164 165 4.946157 ACCATTCAACCATGCAAACAAAAA 59.054 33.333 0.00 0.00 0.00 1.94
165 166 4.521146 ACCATTCAACCATGCAAACAAAA 58.479 34.783 0.00 0.00 0.00 2.44
166 167 4.148128 ACCATTCAACCATGCAAACAAA 57.852 36.364 0.00 0.00 0.00 2.83
167 168 3.834489 ACCATTCAACCATGCAAACAA 57.166 38.095 0.00 0.00 0.00 2.83
168 169 3.464907 CAACCATTCAACCATGCAAACA 58.535 40.909 0.00 0.00 0.00 2.83
169 170 2.223845 GCAACCATTCAACCATGCAAAC 59.776 45.455 0.00 0.00 34.10 2.93
170 171 2.158856 TGCAACCATTCAACCATGCAAA 60.159 40.909 0.00 0.00 40.47 3.68
171 172 1.415289 TGCAACCATTCAACCATGCAA 59.585 42.857 0.00 0.00 40.47 4.08
172 173 1.046204 TGCAACCATTCAACCATGCA 58.954 45.000 0.00 0.00 41.08 3.96
173 174 2.389962 ATGCAACCATTCAACCATGC 57.610 45.000 0.00 0.00 0.00 4.06
174 175 4.865925 CAGTTATGCAACCATTCAACCATG 59.134 41.667 0.00 0.00 35.05 3.66
175 176 4.771577 TCAGTTATGCAACCATTCAACCAT 59.228 37.500 0.00 0.00 35.05 3.55
176 177 4.148079 TCAGTTATGCAACCATTCAACCA 58.852 39.130 0.00 0.00 35.05 3.67
177 178 4.782019 TCAGTTATGCAACCATTCAACC 57.218 40.909 0.00 0.00 35.05 3.77
178 179 8.810427 CAATATTCAGTTATGCAACCATTCAAC 58.190 33.333 0.00 0.00 35.05 3.18
179 180 8.530311 ACAATATTCAGTTATGCAACCATTCAA 58.470 29.630 0.00 0.00 35.05 2.69
180 181 8.065473 ACAATATTCAGTTATGCAACCATTCA 57.935 30.769 0.00 0.00 35.05 2.57
181 182 7.649306 GGACAATATTCAGTTATGCAACCATTC 59.351 37.037 0.00 0.00 35.05 2.67
182 183 7.342799 AGGACAATATTCAGTTATGCAACCATT 59.657 33.333 0.00 0.00 35.05 3.16
183 184 6.835488 AGGACAATATTCAGTTATGCAACCAT 59.165 34.615 0.00 0.00 35.05 3.55
184 185 6.095300 CAGGACAATATTCAGTTATGCAACCA 59.905 38.462 0.00 0.00 35.05 3.67
185 186 6.318648 TCAGGACAATATTCAGTTATGCAACC 59.681 38.462 0.00 0.00 35.05 3.77
186 187 7.320443 TCAGGACAATATTCAGTTATGCAAC 57.680 36.000 0.00 0.00 34.67 4.17
187 188 7.013559 CCATCAGGACAATATTCAGTTATGCAA 59.986 37.037 0.00 0.00 36.89 4.08
188 189 6.487668 CCATCAGGACAATATTCAGTTATGCA 59.512 38.462 0.00 0.00 36.89 3.96
189 190 6.712095 TCCATCAGGACAATATTCAGTTATGC 59.288 38.462 0.00 0.00 39.61 3.14
208 209 6.127507 GCATACAGACTATAGCTGATCCATCA 60.128 42.308 22.80 0.00 36.86 3.07
209 210 6.096705 AGCATACAGACTATAGCTGATCCATC 59.903 42.308 22.80 3.63 36.86 3.51
210 211 5.957168 AGCATACAGACTATAGCTGATCCAT 59.043 40.000 22.80 11.82 36.86 3.41
211 212 5.328565 AGCATACAGACTATAGCTGATCCA 58.671 41.667 22.80 10.61 36.86 3.41
212 213 5.913137 AGCATACAGACTATAGCTGATCC 57.087 43.478 22.80 12.18 36.86 3.36
215 216 8.409371 GCATATAAGCATACAGACTATAGCTGA 58.591 37.037 22.80 11.90 36.86 4.26
216 217 8.412456 AGCATATAAGCATACAGACTATAGCTG 58.588 37.037 17.40 17.40 36.85 4.24
217 218 8.532186 AGCATATAAGCATACAGACTATAGCT 57.468 34.615 2.37 0.00 36.85 3.32
267 268 5.010516 CCATTGACAACAAACATGACCCTTA 59.989 40.000 0.00 0.00 39.54 2.69
273 274 4.669206 AAGCCATTGACAACAAACATGA 57.331 36.364 0.00 0.00 39.54 3.07
280 281 8.673711 GTGTATATTTCTAAGCCATTGACAACA 58.326 33.333 0.00 0.00 0.00 3.33
326 327 5.061311 CAGCATAGCGGATTTTTGAAAACAG 59.939 40.000 0.00 0.00 0.00 3.16
333 334 4.825546 ATCTCAGCATAGCGGATTTTTG 57.174 40.909 0.00 0.00 31.76 2.44
335 336 5.181748 GGATATCTCAGCATAGCGGATTTT 58.818 41.667 2.05 0.00 31.76 1.82
349 350 4.218635 GTGAGATTACAGGCGGATATCTCA 59.781 45.833 21.66 21.66 45.26 3.27
352 353 3.368531 GGGTGAGATTACAGGCGGATATC 60.369 52.174 0.00 0.00 0.00 1.63
358 359 1.883084 GCGGGTGAGATTACAGGCG 60.883 63.158 0.00 0.00 0.00 5.52
359 360 0.750850 TAGCGGGTGAGATTACAGGC 59.249 55.000 0.00 0.00 0.00 4.85
362 363 1.611977 CGGATAGCGGGTGAGATTACA 59.388 52.381 0.00 0.00 0.00 2.41
363 364 1.669211 GCGGATAGCGGGTGAGATTAC 60.669 57.143 0.00 0.00 35.41 1.89
364 365 0.601558 GCGGATAGCGGGTGAGATTA 59.398 55.000 0.00 0.00 35.41 1.75
366 367 3.052081 GCGGATAGCGGGTGAGAT 58.948 61.111 0.00 0.00 35.41 2.75
395 396 2.158957 GGCGATAGTGGAATGAGGTTGA 60.159 50.000 0.00 0.00 39.35 3.18
425 430 2.427095 AGGGCCAAGCTTTTAAATAGCG 59.573 45.455 6.18 4.96 43.37 4.26
430 435 4.102367 ACAATCAAGGGCCAAGCTTTTAAA 59.898 37.500 6.18 0.00 0.00 1.52
433 438 2.049372 ACAATCAAGGGCCAAGCTTTT 58.951 42.857 6.18 0.00 0.00 2.27
438 443 3.749665 TTTGAACAATCAAGGGCCAAG 57.250 42.857 6.18 0.00 45.82 3.61
469 474 9.418045 GGATTTTAAATGGATTTGACGAAAGAA 57.582 29.630 0.00 0.00 0.00 2.52
511 530 5.305585 TCTTTCTTCGCTACCTCAACATTT 58.694 37.500 0.00 0.00 0.00 2.32
523 542 3.594134 CCAGAAGTCATCTTTCTTCGCT 58.406 45.455 0.00 0.00 43.07 4.93
525 544 2.675348 GGCCAGAAGTCATCTTTCTTCG 59.325 50.000 0.00 0.00 43.07 3.79
585 604 4.216257 ACACAGAAGCTCATAAAAATGCGT 59.784 37.500 0.00 0.00 0.00 5.24
590 609 4.975502 CGCAAACACAGAAGCTCATAAAAA 59.024 37.500 0.00 0.00 0.00 1.94
599 618 0.848305 CAAAGCGCAAACACAGAAGC 59.152 50.000 11.47 0.00 0.00 3.86
600 619 2.111756 GACAAAGCGCAAACACAGAAG 58.888 47.619 11.47 0.00 0.00 2.85
664 684 5.558818 AGTCGTTATATCGGTAGTCTCCAT 58.441 41.667 3.50 0.00 0.00 3.41
667 687 6.783892 AGAAGTCGTTATATCGGTAGTCTC 57.216 41.667 3.50 0.00 0.00 3.36
670 690 9.547753 TTTAGTAGAAGTCGTTATATCGGTAGT 57.452 33.333 3.50 0.00 0.00 2.73
704 724 4.940905 TCATGGCATGGATGGTTATTTG 57.059 40.909 26.15 0.00 0.00 2.32
705 725 5.603395 TGATTCATGGCATGGATGGTTATTT 59.397 36.000 25.70 0.00 0.00 1.40
711 731 2.557056 GTCTGATTCATGGCATGGATGG 59.443 50.000 25.70 16.84 0.00 3.51
720 740 6.882678 TGCCATATTATCTGTCTGATTCATGG 59.117 38.462 15.39 15.39 38.36 3.66
738 758 2.358195 GGAGGGGTCAACTTTGCCATAT 60.358 50.000 5.26 0.00 0.00 1.78
773 793 7.657354 AGAATCTTTTATGGCAAACAGAAAACC 59.343 33.333 0.00 0.00 43.21 3.27
774 794 8.490355 CAGAATCTTTTATGGCAAACAGAAAAC 58.510 33.333 0.00 0.00 43.21 2.43
778 798 6.942005 TCTCAGAATCTTTTATGGCAAACAGA 59.058 34.615 0.00 0.00 0.00 3.41
843 868 1.882352 GCAGAAAGAATGGTGGGTCGT 60.882 52.381 0.00 0.00 0.00 4.34
979 2195 2.663520 TGCGAGCGAGCCGAAAAA 60.664 55.556 9.45 0.00 36.02 1.94
1188 2404 4.202070 GGATCACTAGTTCGAGAAGGAAGG 60.202 50.000 0.00 0.00 0.00 3.46
1199 2415 2.037381 GGAATCCGGGGATCACTAGTTC 59.963 54.545 0.00 0.00 33.08 3.01
1201 2417 1.062428 TGGAATCCGGGGATCACTAGT 60.062 52.381 0.00 0.00 33.08 2.57
1205 2421 0.250901 CCATGGAATCCGGGGATCAC 60.251 60.000 5.56 0.00 33.08 3.06
1247 2464 5.291128 CGACCGTATTAGCTGACAAATCTTT 59.709 40.000 0.00 0.00 0.00 2.52
1248 2465 4.804139 CGACCGTATTAGCTGACAAATCTT 59.196 41.667 0.00 0.00 0.00 2.40
1249 2466 4.360563 CGACCGTATTAGCTGACAAATCT 58.639 43.478 0.00 0.00 0.00 2.40
1250 2467 3.060473 GCGACCGTATTAGCTGACAAATC 60.060 47.826 0.00 0.00 0.00 2.17
1251 2468 2.864343 GCGACCGTATTAGCTGACAAAT 59.136 45.455 0.00 0.00 0.00 2.32
1252 2469 2.094390 AGCGACCGTATTAGCTGACAAA 60.094 45.455 0.00 0.00 38.67 2.83
1253 2470 1.475280 AGCGACCGTATTAGCTGACAA 59.525 47.619 0.00 0.00 38.67 3.18
1254 2471 1.100510 AGCGACCGTATTAGCTGACA 58.899 50.000 0.00 0.00 38.67 3.58
1255 2472 1.852895 CAAGCGACCGTATTAGCTGAC 59.147 52.381 0.00 0.00 40.17 3.51
1265 2482 4.003788 CCACTCCCAAGCGACCGT 62.004 66.667 0.00 0.00 0.00 4.83
1273 2490 3.916184 GGAAGTCCCCACTCCCAA 58.084 61.111 0.00 0.00 29.93 4.12
1297 2514 6.377712 CCTCTGGTAGCCTAGGTTATATGTAC 59.622 46.154 11.31 0.00 0.00 2.90
1298 2515 6.491383 CCTCTGGTAGCCTAGGTTATATGTA 58.509 44.000 11.31 0.00 0.00 2.29
1299 2516 5.334421 CCTCTGGTAGCCTAGGTTATATGT 58.666 45.833 11.31 0.00 0.00 2.29
1300 2517 4.712337 CCCTCTGGTAGCCTAGGTTATATG 59.288 50.000 11.31 3.37 0.00 1.78
1301 2518 4.611150 TCCCTCTGGTAGCCTAGGTTATAT 59.389 45.833 11.31 0.00 0.00 0.86
1302 2519 3.992311 TCCCTCTGGTAGCCTAGGTTATA 59.008 47.826 11.31 1.75 0.00 0.98
1303 2520 2.795960 TCCCTCTGGTAGCCTAGGTTAT 59.204 50.000 11.31 0.00 0.00 1.89
1304 2521 2.220470 TCCCTCTGGTAGCCTAGGTTA 58.780 52.381 11.31 5.83 0.00 2.85
1328 2545 3.870274 AGTATCCCCTGCGTCTAAAAAC 58.130 45.455 0.00 0.00 0.00 2.43
1336 2553 3.039011 ACAGATTAAGTATCCCCTGCGT 58.961 45.455 0.00 0.00 33.45 5.24
1339 2556 6.884295 TGTTGAAACAGATTAAGTATCCCCTG 59.116 38.462 0.00 0.00 34.30 4.45
1445 2662 7.579589 TTATTCTTTGCATGGAAAATCAACG 57.420 32.000 13.69 1.25 0.00 4.10
1538 2761 4.507756 TCAACAAGAGAACATCGAACACAG 59.492 41.667 0.00 0.00 0.00 3.66
1541 2764 4.693283 AGTCAACAAGAGAACATCGAACA 58.307 39.130 0.00 0.00 0.00 3.18
1598 2825 2.554032 CCACAGGAACAGATTTGGTGAC 59.446 50.000 0.00 0.00 0.00 3.67
1601 2828 3.312736 AACCACAGGAACAGATTTGGT 57.687 42.857 0.00 0.00 39.05 3.67
1617 2844 9.710900 CAACAACAGCATATATAGAGATAACCA 57.289 33.333 0.00 0.00 0.00 3.67
1798 3063 6.159293 GGATGAAACCCAAAAAGCTCTAAAG 58.841 40.000 0.00 0.00 0.00 1.85
1902 3167 7.148239 CCAGATAAAGTTAAATTCCACGAAGCT 60.148 37.037 0.00 0.00 0.00 3.74
1903 3168 6.967199 CCAGATAAAGTTAAATTCCACGAAGC 59.033 38.462 0.00 0.00 0.00 3.86
1932 3197 3.823873 TGCCCAGCGAAATTCTTTTCTAA 59.176 39.130 0.00 0.00 39.30 2.10
1941 3206 1.747355 CTTCTGATGCCCAGCGAAATT 59.253 47.619 0.00 0.00 42.62 1.82
1956 3221 3.119566 GCAATCAAAAGGAGCCTCTTCTG 60.120 47.826 0.00 0.00 0.00 3.02
1957 3222 3.087781 GCAATCAAAAGGAGCCTCTTCT 58.912 45.455 0.00 0.00 0.00 2.85
1961 3226 3.949842 AAAGCAATCAAAAGGAGCCTC 57.050 42.857 0.00 0.00 0.00 4.70
1962 3227 3.642848 TCAAAAGCAATCAAAAGGAGCCT 59.357 39.130 0.00 0.00 0.00 4.58
1963 3228 3.742882 GTCAAAAGCAATCAAAAGGAGCC 59.257 43.478 0.00 0.00 0.00 4.70
1964 3229 3.742882 GGTCAAAAGCAATCAAAAGGAGC 59.257 43.478 0.00 0.00 0.00 4.70
1965 3230 5.205759 AGGTCAAAAGCAATCAAAAGGAG 57.794 39.130 0.00 0.00 0.00 3.69
1967 3232 5.358922 TGAAGGTCAAAAGCAATCAAAAGG 58.641 37.500 0.00 0.00 0.00 3.11
1968 3233 8.653338 CATATGAAGGTCAAAAGCAATCAAAAG 58.347 33.333 0.00 0.00 0.00 2.27
1969 3234 7.603404 CCATATGAAGGTCAAAAGCAATCAAAA 59.397 33.333 3.65 0.00 0.00 2.44
1970 3235 7.098477 CCATATGAAGGTCAAAAGCAATCAAA 58.902 34.615 3.65 0.00 0.00 2.69
1971 3236 6.351202 CCCATATGAAGGTCAAAAGCAATCAA 60.351 38.462 3.65 0.00 0.00 2.57
1972 3237 5.127519 CCCATATGAAGGTCAAAAGCAATCA 59.872 40.000 3.65 0.00 0.00 2.57
1973 3238 5.594926 CCCATATGAAGGTCAAAAGCAATC 58.405 41.667 3.65 0.00 0.00 2.67
1974 3239 4.141869 GCCCATATGAAGGTCAAAAGCAAT 60.142 41.667 3.65 0.00 0.00 3.56
1975 3240 3.195396 GCCCATATGAAGGTCAAAAGCAA 59.805 43.478 3.65 0.00 0.00 3.91
1976 3241 2.760092 GCCCATATGAAGGTCAAAAGCA 59.240 45.455 3.65 0.00 0.00 3.91
1977 3242 3.026694 AGCCCATATGAAGGTCAAAAGC 58.973 45.455 3.65 0.00 0.00 3.51
1978 3243 4.019174 ACAGCCCATATGAAGGTCAAAAG 58.981 43.478 3.65 0.00 0.00 2.27
1979 3244 4.046286 ACAGCCCATATGAAGGTCAAAA 57.954 40.909 3.65 0.00 0.00 2.44
1980 3245 3.737559 ACAGCCCATATGAAGGTCAAA 57.262 42.857 3.65 0.00 0.00 2.69
1989 3254 3.303351 AGGAAGGAAACAGCCCATATG 57.697 47.619 0.00 0.00 0.00 1.78
1990 3255 4.751028 GCATAGGAAGGAAACAGCCCATAT 60.751 45.833 0.00 0.00 0.00 1.78
2010 3275 5.220777 CGTTATTAGATCCAACAAACGGCAT 60.221 40.000 12.48 0.00 35.76 4.40
2013 3278 5.808540 TCTCGTTATTAGATCCAACAAACGG 59.191 40.000 17.19 11.27 38.86 4.44
2025 3290 6.703319 TGTCACCCATTTTCTCGTTATTAGA 58.297 36.000 0.00 0.00 0.00 2.10
2033 3298 6.038603 ACATCAATATGTCACCCATTTTCTCG 59.961 38.462 0.00 0.00 42.92 4.04
2059 3324 9.577110 CATGAAAATTGCAGAAAGTACATACAT 57.423 29.630 0.00 0.00 0.00 2.29
2060 3325 8.575589 ACATGAAAATTGCAGAAAGTACATACA 58.424 29.630 0.00 0.00 0.00 2.29
2143 3408 2.431057 GCTAAAGATCGGACAGAAGGGA 59.569 50.000 0.00 0.00 0.00 4.20
2178 3443 6.480763 TGGCTGGTCTCAAATCTAAATAACA 58.519 36.000 0.00 0.00 0.00 2.41
2179 3444 6.458888 GCTGGCTGGTCTCAAATCTAAATAAC 60.459 42.308 0.00 0.00 0.00 1.89
2181 3446 5.126067 GCTGGCTGGTCTCAAATCTAAATA 58.874 41.667 0.00 0.00 0.00 1.40
2182 3447 3.950395 GCTGGCTGGTCTCAAATCTAAAT 59.050 43.478 0.00 0.00 0.00 1.40
2387 3659 8.623903 TGGATAACAATGAAAGTGCAGAATATC 58.376 33.333 0.00 0.00 33.50 1.63
2562 3839 2.675348 GAGCTTAACACCATCTGCTCAC 59.325 50.000 0.00 0.00 44.19 3.51
2797 4084 7.664552 ATGCCTTCCATTTTGAGAATTATCA 57.335 32.000 0.00 0.00 0.00 2.15
2969 4256 8.155510 TCCAATGAATTCATGAACCAAAAATCA 58.844 29.630 21.39 7.29 36.56 2.57
3041 4328 3.387374 ACAAAAGTTGGCATTCACCATCA 59.613 39.130 0.00 0.00 40.13 3.07
3044 4331 2.158986 CCACAAAAGTTGGCATTCACCA 60.159 45.455 0.00 0.00 38.16 4.17
3058 4345 2.015736 ACAAACGCATTGCCACAAAA 57.984 40.000 2.41 0.00 43.13 2.44
3137 4424 4.584638 ACAAGAGGCCACCATTAACATA 57.415 40.909 5.01 0.00 0.00 2.29
3156 4443 8.800370 TTAACAATGAGGCAATATTCAGTACA 57.200 30.769 0.00 0.00 0.00 2.90
3190 4477 4.394300 TTTGATGTGCAAACCAAGTTTTGG 59.606 37.500 6.30 6.30 43.73 3.28
3311 4606 1.851666 GCAACAAAATGTGTGACACCG 59.148 47.619 13.85 0.00 40.60 4.94
3360 4655 5.120830 CAGAAAGAGCAGCGTTTTAGTACAT 59.879 40.000 0.00 0.00 0.00 2.29
3424 4727 9.823647 TTGTAGCCAAATGAAAATTTAGAACAA 57.176 25.926 0.00 0.00 0.00 2.83
3500 4803 5.011533 TGTTGGAAGGTAATGTCCCATTTTG 59.988 40.000 0.00 0.00 32.48 2.44
3509 4812 3.910627 AGAGGTCTGTTGGAAGGTAATGT 59.089 43.478 0.00 0.00 0.00 2.71
3510 4813 4.559862 AGAGGTCTGTTGGAAGGTAATG 57.440 45.455 0.00 0.00 0.00 1.90
3511 4814 5.187967 CAGTAGAGGTCTGTTGGAAGGTAAT 59.812 44.000 0.00 0.00 0.00 1.89
3512 4815 4.527038 CAGTAGAGGTCTGTTGGAAGGTAA 59.473 45.833 0.00 0.00 0.00 2.85
3521 4825 3.515901 GGGAATGACAGTAGAGGTCTGTT 59.484 47.826 0.00 0.00 44.68 3.16
3553 4857 2.290367 CGAATGAGACAAAGTTGTGGCA 59.710 45.455 0.42 0.10 42.43 4.92
3626 4932 4.903045 TGCTTAGCCACTAGTAAACCTT 57.097 40.909 0.29 0.00 0.00 3.50
3651 4957 6.530120 TGTTAGCTCCTAAAATCAGTTGACA 58.470 36.000 0.00 0.00 0.00 3.58
3655 4961 8.465273 AAAGTTGTTAGCTCCTAAAATCAGTT 57.535 30.769 0.00 0.00 0.00 3.16
3670 4976 4.545823 TCACGAAGCCAAAAGTTGTTAG 57.454 40.909 0.00 0.00 0.00 2.34
3684 4990 1.208614 GGCAGCTTGCTTCACGAAG 59.791 57.895 2.29 2.29 44.28 3.79
3829 5135 2.136878 CAGCCCCAGATCTAGCGGT 61.137 63.158 0.00 0.00 0.00 5.68
3868 5174 4.577320 AGGCTCCTTCCTGAAGCT 57.423 55.556 1.25 0.00 37.11 3.74
3928 5234 1.306633 GGCTCCCCCTAAAACCAGG 59.693 63.158 0.00 0.00 35.26 4.45
4006 5312 2.869801 CAGGCAGAACAAGTTCACGTAA 59.130 45.455 14.69 0.00 41.84 3.18
4048 5354 1.205655 TCTCCTTGTTGCTCGATCCAG 59.794 52.381 0.00 0.00 0.00 3.86
4072 5378 6.119666 GATGTGAACCATTGCTTCCAAGCT 62.120 45.833 12.43 0.00 42.57 3.74
4142 5448 1.590238 GGTCAAGCGTCTTCGATCATG 59.410 52.381 0.00 0.00 39.71 3.07
4143 5449 1.204704 TGGTCAAGCGTCTTCGATCAT 59.795 47.619 0.00 0.00 39.71 2.45
4144 5450 0.601057 TGGTCAAGCGTCTTCGATCA 59.399 50.000 0.00 0.00 39.71 2.92
4145 5451 1.135373 TCTGGTCAAGCGTCTTCGATC 60.135 52.381 0.00 0.00 39.71 3.69
4146 5452 0.888619 TCTGGTCAAGCGTCTTCGAT 59.111 50.000 0.00 0.00 39.71 3.59
4147 5453 0.671796 TTCTGGTCAAGCGTCTTCGA 59.328 50.000 0.00 0.00 39.71 3.71
4148 5454 1.063806 CTTCTGGTCAAGCGTCTTCG 58.936 55.000 0.00 0.00 40.37 3.79
4232 5546 4.308458 TGGCACCCGAACTCCACG 62.308 66.667 0.00 0.00 0.00 4.94
4291 5607 4.588278 CTTCTCGTTGAAGTTGTGGAAAC 58.412 43.478 11.00 0.00 45.26 2.78
4403 5728 2.369203 TCCGACAACACCAGGAATACAA 59.631 45.455 0.00 0.00 0.00 2.41
4413 5738 2.699954 AGATCATGTTCCGACAACACC 58.300 47.619 0.00 0.00 39.66 4.16
4521 6003 2.621055 CTCACCCGAGAACCTCTATCTG 59.379 54.545 0.00 0.00 42.34 2.90
4547 6030 1.212751 CGCTGTCGACATCACTCCA 59.787 57.895 20.40 0.00 38.10 3.86
4638 6928 6.904626 AGAGGGCATGAAGACAATAACTAAT 58.095 36.000 0.00 0.00 0.00 1.73
4639 6929 6.313519 AGAGGGCATGAAGACAATAACTAA 57.686 37.500 0.00 0.00 0.00 2.24
4640 6930 5.957771 AGAGGGCATGAAGACAATAACTA 57.042 39.130 0.00 0.00 0.00 2.24
4720 7013 4.101741 ACTCAATGTAGAGGCCAAGGATAC 59.898 45.833 5.01 0.51 39.97 2.24
4727 7020 2.420547 GCATCACTCAATGTAGAGGCCA 60.421 50.000 5.01 0.00 39.97 5.36
4728 7021 2.216898 GCATCACTCAATGTAGAGGCC 58.783 52.381 0.00 0.00 39.97 5.19
4739 7032 1.140652 TCAGGTTGTGTGCATCACTCA 59.859 47.619 16.70 0.00 46.27 3.41
4808 7101 1.210234 TGGGCTATCCATGTGTGACTG 59.790 52.381 0.00 0.00 41.46 3.51
4809 7102 1.583556 TGGGCTATCCATGTGTGACT 58.416 50.000 0.00 0.00 41.46 3.41
4908 7202 0.109597 GTCTTCGGTTGCAGCCAATG 60.110 55.000 20.42 3.56 32.75 2.82
4910 7204 1.148273 AGTCTTCGGTTGCAGCCAA 59.852 52.632 20.42 11.58 0.00 4.52
4911 7205 1.597854 CAGTCTTCGGTTGCAGCCA 60.598 57.895 20.42 4.02 0.00 4.75
4912 7206 0.320421 TACAGTCTTCGGTTGCAGCC 60.320 55.000 10.00 10.00 0.00 4.85
4916 7210 1.352156 CGCCTACAGTCTTCGGTTGC 61.352 60.000 0.00 0.00 0.00 4.17
4922 7216 0.461961 ATCAGGCGCCTACAGTCTTC 59.538 55.000 32.30 0.00 0.00 2.87
4928 7222 2.134287 GGAGGATCAGGCGCCTACA 61.134 63.158 32.30 19.91 35.09 2.74
4954 7250 8.560374 GTTATCTTCAAGGCCATCAACTATTAC 58.440 37.037 5.01 0.00 0.00 1.89
4961 7257 4.591321 AGGTTATCTTCAAGGCCATCAA 57.409 40.909 5.01 0.00 0.00 2.57
4962 7258 4.473196 TGTAGGTTATCTTCAAGGCCATCA 59.527 41.667 5.01 0.00 0.00 3.07
4965 7261 6.569127 TTATGTAGGTTATCTTCAAGGCCA 57.431 37.500 5.01 0.00 0.00 5.36
5026 7331 3.645884 CACTTCACTTTGAGCCATTTGG 58.354 45.455 0.00 0.00 38.53 3.28
5042 7347 1.335872 CCGTGTGGGAATTTGCACTTC 60.336 52.381 0.00 0.00 38.47 3.01
5045 7350 0.318614 CACCGTGTGGGAATTTGCAC 60.319 55.000 0.00 0.00 40.75 4.57
5063 7368 0.809385 GAAGTCTCGGATCCGTGTCA 59.191 55.000 32.15 13.46 40.74 3.58
5064 7369 0.809385 TGAAGTCTCGGATCCGTGTC 59.191 55.000 32.15 25.94 40.74 3.67
5065 7370 1.067776 GTTGAAGTCTCGGATCCGTGT 60.068 52.381 32.15 15.17 40.74 4.49
5066 7371 1.202582 AGTTGAAGTCTCGGATCCGTG 59.797 52.381 32.15 29.16 40.74 4.94
5067 7372 1.546961 AGTTGAAGTCTCGGATCCGT 58.453 50.000 32.15 14.22 40.74 4.69
5068 7373 2.094700 TCAAGTTGAAGTCTCGGATCCG 60.095 50.000 28.62 28.62 41.35 4.18
5069 7374 3.193691 TCTCAAGTTGAAGTCTCGGATCC 59.806 47.826 7.06 0.00 0.00 3.36
5070 7375 4.442375 TCTCAAGTTGAAGTCTCGGATC 57.558 45.455 7.06 0.00 0.00 3.36
5089 7394 2.632537 ACTGGTTAGTGGGGTGAATCT 58.367 47.619 0.00 0.00 35.34 2.40
5097 7402 3.815809 TGTTCAGAAACTGGTTAGTGGG 58.184 45.455 0.00 0.00 37.19 4.61
5098 7403 7.413000 CGAATATGTTCAGAAACTGGTTAGTGG 60.413 40.741 2.95 0.00 33.96 4.00
5113 7419 4.417506 CACGAGTGGTACGAATATGTTCA 58.582 43.478 2.95 0.00 33.86 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.