Multiple sequence alignment - TraesCS3B01G179400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G179400 chr3B 100.000 5369 0 0 1 5369 187351153 187356521 0.000000e+00 9915.0
1 TraesCS3B01G179400 chr3B 92.632 95 7 0 2014 2108 51031824 51031730 2.610000e-28 137.0
2 TraesCS3B01G179400 chr3B 90.909 55 5 0 1001 1055 525832718 525832664 2.070000e-09 75.0
3 TraesCS3B01G179400 chr3B 100.000 33 0 0 1152 1184 447229387 447229419 1.610000e-05 62.1
4 TraesCS3B01G179400 chr3D 91.360 1574 74 26 3457 4996 130935390 130936935 0.000000e+00 2097.0
5 TraesCS3B01G179400 chr3D 92.122 1282 65 20 2151 3405 130934114 130935386 0.000000e+00 1775.0
6 TraesCS3B01G179400 chr3D 87.604 718 40 19 705 1396 130932796 130933490 0.000000e+00 787.0
7 TraesCS3B01G179400 chr3D 88.550 393 37 3 4979 5369 130936950 130937336 2.260000e-128 470.0
8 TraesCS3B01G179400 chr3D 88.095 252 13 4 107 356 130932032 130932268 3.170000e-72 283.0
9 TraesCS3B01G179400 chr3D 85.897 234 16 3 1535 1767 130933796 130934013 3.230000e-57 233.0
10 TraesCS3B01G179400 chr3D 87.000 200 7 8 516 715 130932401 130932581 1.960000e-49 207.0
11 TraesCS3B01G179400 chr3D 99.029 103 1 0 1910 2012 130934013 130934115 9.180000e-43 185.0
12 TraesCS3B01G179400 chr3D 86.713 143 15 3 2011 2152 11421046 11420907 7.200000e-34 156.0
13 TraesCS3B01G179400 chr3D 90.909 55 5 0 1001 1055 400277434 400277380 2.070000e-09 75.0
14 TraesCS3B01G179400 chr3A 92.526 1271 73 13 2946 4198 142898596 142899862 0.000000e+00 1801.0
15 TraesCS3B01G179400 chr3A 86.599 1567 92 59 516 2010 142896187 142897707 0.000000e+00 1622.0
16 TraesCS3B01G179400 chr3A 89.228 984 75 16 4394 5369 142899910 142900870 0.000000e+00 1201.0
17 TraesCS3B01G179400 chr3A 94.155 787 39 5 2150 2930 142897708 142898493 0.000000e+00 1192.0
18 TraesCS3B01G179400 chr3A 92.715 302 7 2 4 291 142895121 142895421 6.430000e-114 422.0
19 TraesCS3B01G179400 chr3A 93.519 108 5 2 1683 1789 142897495 142897601 5.570000e-35 159.0
20 TraesCS3B01G179400 chr3A 92.632 95 7 0 2007 2101 572596738 572596644 2.610000e-28 137.0
21 TraesCS3B01G179400 chr3A 90.909 55 5 0 1001 1055 519210206 519210152 2.070000e-09 75.0
22 TraesCS3B01G179400 chr5D 88.806 134 11 2 2026 2155 519344064 519343931 1.550000e-35 161.0
23 TraesCS3B01G179400 chr5D 79.070 172 17 8 2011 2164 61106125 61106295 3.420000e-17 100.0
24 TraesCS3B01G179400 chr5B 85.417 144 20 1 2011 2153 271941862 271942005 1.200000e-31 148.0
25 TraesCS3B01G179400 chr5B 88.991 109 10 2 2002 2108 149590387 149590495 3.370000e-27 134.0
26 TraesCS3B01G179400 chrUn 91.176 102 8 1 2007 2108 81477635 81477735 2.610000e-28 137.0
27 TraesCS3B01G179400 chr4A 91.837 98 8 0 2011 2108 139870766 139870669 2.610000e-28 137.0
28 TraesCS3B01G179400 chr1A 90.909 99 8 1 2010 2108 368368351 368368448 1.210000e-26 132.0
29 TraesCS3B01G179400 chr1A 88.235 102 12 0 1277 1378 527175291 527175392 7.300000e-24 122.0
30 TraesCS3B01G179400 chr1A 91.071 56 5 0 1001 1056 527174617 527174672 5.770000e-10 76.8
31 TraesCS3B01G179400 chr4D 86.735 98 13 0 2011 2108 294699654 294699557 5.690000e-20 110.0
32 TraesCS3B01G179400 chr7B 77.707 157 25 7 2011 2159 33530282 33530128 2.660000e-13 87.9
33 TraesCS3B01G179400 chr1B 83.696 92 10 4 970 1061 580631890 580631976 1.240000e-11 82.4
34 TraesCS3B01G179400 chr2D 92.593 54 4 0 1262 1315 36758233 36758180 1.600000e-10 78.7
35 TraesCS3B01G179400 chr2D 84.615 78 6 4 2083 2155 116641941 116641865 7.460000e-09 73.1
36 TraesCS3B01G179400 chr6A 87.692 65 7 1 2104 2168 574574342 574574279 2.070000e-09 75.0
37 TraesCS3B01G179400 chr6A 88.710 62 6 1 2108 2168 574611886 574611825 2.070000e-09 75.0
38 TraesCS3B01G179400 chr1D 89.286 56 6 0 1001 1056 429696452 429696507 2.680000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G179400 chr3B 187351153 187356521 5368 False 9915.000000 9915 100.000000 1 5369 1 chr3B.!!$F1 5368
1 TraesCS3B01G179400 chr3D 130932032 130937336 5304 False 754.625000 2097 89.957125 107 5369 8 chr3D.!!$F1 5262
2 TraesCS3B01G179400 chr3A 142895121 142900870 5749 False 1066.166667 1801 91.457000 4 5369 6 chr3A.!!$F1 5365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 1761 0.032615 AAAGGCCAAACCAGACCACA 60.033 50.0 5.01 0.00 43.14 4.17 F
1193 2088 0.035739 TGAACCAGTAAGGCCGAACC 59.964 55.0 0.00 0.00 43.14 3.62 F
1194 2089 0.035739 GAACCAGTAAGGCCGAACCA 59.964 55.0 0.00 0.00 43.14 3.67 F
1195 2090 0.250597 AACCAGTAAGGCCGAACCAC 60.251 55.0 0.00 0.00 43.14 4.16 F
1271 2167 0.316841 CGATTTGGGTGGTTGGTTGG 59.683 55.0 0.00 0.00 0.00 3.77 F
1818 2896 0.453390 GCAAACATCCTGCTGGTAGC 59.547 55.0 9.73 2.84 42.82 3.58 F
1826 2904 0.687757 CCTGCTGGTAGCCTGGTAGA 60.688 60.0 0.51 0.00 41.51 2.59 F
3413 4621 0.724549 TGGATCGTGTGCGTTATTGC 59.275 50.0 0.00 0.00 39.49 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2702 3802 0.109412 GAATGCACTGAACAGGCTGC 60.109 55.000 15.89 8.28 32.85 5.25 R
2718 3819 3.866816 TGAGAGATGGGCCATAGAGAAT 58.133 45.455 21.26 2.25 0.00 2.40 R
2817 3918 4.270008 CGGTGGGGATAAAGAGACAAATT 58.730 43.478 0.00 0.00 0.00 1.82 R
2943 4048 4.406456 TCAAATCAACCAGCATACCAAGT 58.594 39.130 0.00 0.00 0.00 3.16 R
3220 4423 5.123227 CCATATTAAGTGTCCGGTGAATGT 58.877 41.667 0.00 0.00 0.00 2.71 R
3385 4593 1.003116 GCACACGATCCATGCTTCATC 60.003 52.381 0.00 0.00 36.40 2.92 R
3798 5011 1.247567 ATGACGGGCCAAACTTTCAG 58.752 50.000 4.39 0.00 0.00 3.02 R
5329 6610 0.178301 GCTACTGCAACCTCCTACCC 59.822 60.000 0.00 0.00 39.41 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.009829 GGCTAACGAGATGCTGTTGG 58.990 55.000 0.00 0.00 0.00 3.77
50 51 1.405526 GGCTAACGAGATGCTGTTGGA 60.406 52.381 0.00 0.00 0.00 3.53
56 57 2.234661 ACGAGATGCTGTTGGATTCAGA 59.765 45.455 0.00 0.00 35.20 3.27
58 59 2.613133 GAGATGCTGTTGGATTCAGAGC 59.387 50.000 0.93 0.93 35.20 4.09
78 79 2.114616 CAAGAGCCAGGGAGATACAGT 58.885 52.381 0.00 0.00 0.00 3.55
250 265 4.867047 AGTAGCATTCAGAATCTGTTGACG 59.133 41.667 10.36 0.00 32.61 4.35
301 316 2.302260 TGAGTTTCAACGGCATTTCCA 58.698 42.857 0.00 0.00 34.01 3.53
303 318 3.320541 TGAGTTTCAACGGCATTTCCATT 59.679 39.130 0.00 0.00 34.01 3.16
304 319 4.520874 TGAGTTTCAACGGCATTTCCATTA 59.479 37.500 0.00 0.00 34.01 1.90
305 320 5.059404 AGTTTCAACGGCATTTCCATTAG 57.941 39.130 0.00 0.00 34.01 1.73
325 342 8.077991 CCATTAGTACATGCCAATGTTCTTATG 58.922 37.037 13.19 13.19 44.94 1.90
369 981 2.569853 TCGATCTTAGCCCTCAAACCAA 59.430 45.455 0.00 0.00 0.00 3.67
373 985 0.955905 TTAGCCCTCAAACCAAACGC 59.044 50.000 0.00 0.00 0.00 4.84
393 1005 1.397390 CCCCTGCCTGCATTCATTCC 61.397 60.000 0.00 0.00 0.00 3.01
400 1012 2.626743 GCCTGCATTCATTCCAGCTTAT 59.373 45.455 0.00 0.00 0.00 1.73
410 1022 4.572389 TCATTCCAGCTTATCTTTCTTCGC 59.428 41.667 0.00 0.00 0.00 4.70
422 1034 8.547967 TTATCTTTCTTCGCAAAATCTGTAGT 57.452 30.769 0.00 0.00 0.00 2.73
423 1035 9.647797 TTATCTTTCTTCGCAAAATCTGTAGTA 57.352 29.630 0.00 0.00 0.00 1.82
425 1037 7.152645 TCTTTCTTCGCAAAATCTGTAGTAGT 58.847 34.615 0.00 0.00 0.00 2.73
434 1046 6.631016 CAAAATCTGTAGTAGTAGGTGCAGA 58.369 40.000 0.00 3.58 37.38 4.26
436 1048 5.838531 ATCTGTAGTAGTAGGTGCAGAAC 57.161 43.478 4.85 0.00 36.70 3.01
445 1057 3.511934 AGTAGGTGCAGAACGAAAGAGAT 59.488 43.478 0.00 0.00 0.00 2.75
446 1058 3.409026 AGGTGCAGAACGAAAGAGATT 57.591 42.857 0.00 0.00 0.00 2.40
451 1063 4.923871 GTGCAGAACGAAAGAGATTACAGA 59.076 41.667 0.00 0.00 0.00 3.41
454 1066 6.975197 TGCAGAACGAAAGAGATTACAGATAG 59.025 38.462 0.00 0.00 0.00 2.08
462 1074 7.171167 CGAAAGAGATTACAGATAGTAGTCGGA 59.829 40.741 0.00 0.00 42.45 4.55
463 1075 7.733402 AAGAGATTACAGATAGTAGTCGGAC 57.267 40.000 0.00 0.00 42.45 4.79
464 1076 7.069877 AGAGATTACAGATAGTAGTCGGACT 57.930 40.000 15.95 15.95 42.45 3.85
465 1077 7.156673 AGAGATTACAGATAGTAGTCGGACTC 58.843 42.308 15.05 6.70 42.45 3.36
466 1078 5.927689 AGATTACAGATAGTAGTCGGACTCG 59.072 44.000 15.05 0.20 42.45 4.18
467 1079 2.836262 ACAGATAGTAGTCGGACTCGG 58.164 52.381 15.05 3.55 36.95 4.63
468 1080 2.144730 CAGATAGTAGTCGGACTCGGG 58.855 57.143 15.05 0.00 36.95 5.14
478 1090 0.806102 CGGACTCGGGCAGTACATTG 60.806 60.000 0.00 0.00 35.26 2.82
479 1091 1.090052 GGACTCGGGCAGTACATTGC 61.090 60.000 0.00 0.00 43.34 3.56
483 1095 1.078497 CGGGCAGTACATTGCTCCA 60.078 57.895 7.01 0.00 41.62 3.86
490 1102 4.640201 GGCAGTACATTGCTCCATTCTTTA 59.360 41.667 7.01 0.00 43.57 1.85
491 1103 5.300286 GGCAGTACATTGCTCCATTCTTTAT 59.700 40.000 7.01 0.00 43.57 1.40
493 1105 7.308229 GGCAGTACATTGCTCCATTCTTTATAG 60.308 40.741 7.01 0.00 43.57 1.31
494 1106 7.442364 GCAGTACATTGCTCCATTCTTTATAGA 59.558 37.037 0.00 0.00 40.89 1.98
495 1107 9.330063 CAGTACATTGCTCCATTCTTTATAGAA 57.670 33.333 0.00 0.00 44.16 2.10
496 1108 9.905713 AGTACATTGCTCCATTCTTTATAGAAA 57.094 29.630 0.00 0.00 43.32 2.52
589 1201 9.866936 GATGAACCGCGTACAATAATAATTTTA 57.133 29.630 4.92 0.00 0.00 1.52
622 1234 6.607600 TGATCAAGCTCATACTTGTAGGTAGT 59.392 38.462 0.00 0.00 45.86 2.73
734 1570 0.387878 CTGTCTGTCTGTCTGTCGCC 60.388 60.000 0.00 0.00 0.00 5.54
746 1583 3.994392 TGTCTGTCGCCACTCTAAAAATC 59.006 43.478 0.00 0.00 0.00 2.17
791 1628 1.945522 CAACGCGTCCATCCAAACA 59.054 52.632 14.44 0.00 0.00 2.83
792 1629 0.521291 CAACGCGTCCATCCAAACAT 59.479 50.000 14.44 0.00 0.00 2.71
793 1630 1.735018 CAACGCGTCCATCCAAACATA 59.265 47.619 14.44 0.00 0.00 2.29
794 1631 1.365699 ACGCGTCCATCCAAACATAC 58.634 50.000 5.58 0.00 0.00 2.39
795 1632 1.338294 ACGCGTCCATCCAAACATACA 60.338 47.619 5.58 0.00 0.00 2.29
798 1635 3.206150 GCGTCCATCCAAACATACAGAT 58.794 45.455 0.00 0.00 0.00 2.90
842 1691 0.811281 CCTTCCAGCAAAACCGATCC 59.189 55.000 0.00 0.00 0.00 3.36
883 1732 3.747976 GCGCACACACCAATCCCC 61.748 66.667 0.30 0.00 0.00 4.81
884 1733 3.430862 CGCACACACCAATCCCCG 61.431 66.667 0.00 0.00 0.00 5.73
893 1742 1.678635 CCAATCCCCGAGCAAAGCA 60.679 57.895 0.00 0.00 0.00 3.91
911 1760 0.389025 CAAAGGCCAAACCAGACCAC 59.611 55.000 5.01 0.00 43.14 4.16
912 1761 0.032615 AAAGGCCAAACCAGACCACA 60.033 50.000 5.01 0.00 43.14 4.17
933 1782 1.000274 ACACAGCGCAAAAATCTTCCC 60.000 47.619 11.47 0.00 0.00 3.97
936 1785 2.094545 ACAGCGCAAAAATCTTCCCATC 60.095 45.455 11.47 0.00 0.00 3.51
937 1786 2.165030 CAGCGCAAAAATCTTCCCATCT 59.835 45.455 11.47 0.00 0.00 2.90
939 1788 2.480244 GCGCAAAAATCTTCCCATCTCC 60.480 50.000 0.30 0.00 0.00 3.71
940 1789 3.019564 CGCAAAAATCTTCCCATCTCCT 58.980 45.455 0.00 0.00 0.00 3.69
961 1810 4.095400 TCCTCCTCAGCCCCCTCC 62.095 72.222 0.00 0.00 0.00 4.30
1073 1958 2.983592 CGCGCCTTTTCCCCAGTT 60.984 61.111 0.00 0.00 0.00 3.16
1130 2025 0.167470 CTGATCAACCTGTGCGCTTG 59.833 55.000 9.73 4.21 0.00 4.01
1138 2033 0.882042 CCTGTGCGCTTGTGTTCTCT 60.882 55.000 9.73 0.00 0.00 3.10
1142 2037 1.136141 GTGCGCTTGTGTTCTCTGATG 60.136 52.381 9.73 0.00 0.00 3.07
1143 2038 1.270252 TGCGCTTGTGTTCTCTGATGA 60.270 47.619 9.73 0.00 0.00 2.92
1144 2039 2.005451 GCGCTTGTGTTCTCTGATGAT 58.995 47.619 0.00 0.00 0.00 2.45
1193 2088 0.035739 TGAACCAGTAAGGCCGAACC 59.964 55.000 0.00 0.00 43.14 3.62
1194 2089 0.035739 GAACCAGTAAGGCCGAACCA 59.964 55.000 0.00 0.00 43.14 3.67
1195 2090 0.250597 AACCAGTAAGGCCGAACCAC 60.251 55.000 0.00 0.00 43.14 4.16
1229 2124 2.795470 GTCTGATTCGTCTAATTCGGGC 59.205 50.000 0.00 0.00 0.00 6.13
1234 2129 5.227908 TGATTCGTCTAATTCGGGCTATTC 58.772 41.667 0.00 0.00 0.00 1.75
1270 2166 1.036707 ACGATTTGGGTGGTTGGTTG 58.963 50.000 0.00 0.00 0.00 3.77
1271 2167 0.316841 CGATTTGGGTGGTTGGTTGG 59.683 55.000 0.00 0.00 0.00 3.77
1401 2331 8.254508 ACAGGTTCTTCATTCATTCTACTACTC 58.745 37.037 0.00 0.00 0.00 2.59
1405 2335 9.424319 GTTCTTCATTCATTCTACTACTCACAA 57.576 33.333 0.00 0.00 0.00 3.33
1406 2336 9.996554 TTCTTCATTCATTCTACTACTCACAAA 57.003 29.630 0.00 0.00 0.00 2.83
1408 2338 7.812309 TCATTCATTCTACTACTCACAAACG 57.188 36.000 0.00 0.00 0.00 3.60
1409 2339 6.811665 TCATTCATTCTACTACTCACAAACGG 59.188 38.462 0.00 0.00 0.00 4.44
1410 2340 5.970317 TCATTCTACTACTCACAAACGGA 57.030 39.130 0.00 0.00 0.00 4.69
1432 2387 6.812160 CGGATAATTAGCTCTGGGTGTATTAC 59.188 42.308 0.02 0.00 0.00 1.89
1433 2388 7.524863 CGGATAATTAGCTCTGGGTGTATTACA 60.525 40.741 0.02 0.00 0.00 2.41
1434 2389 8.322091 GGATAATTAGCTCTGGGTGTATTACAT 58.678 37.037 0.02 0.00 0.00 2.29
1435 2390 9.372369 GATAATTAGCTCTGGGTGTATTACATC 57.628 37.037 0.00 0.00 0.00 3.06
1436 2391 7.380423 AATTAGCTCTGGGTGTATTACATCT 57.620 36.000 7.01 0.00 27.98 2.90
1437 2392 6.808321 TTAGCTCTGGGTGTATTACATCTT 57.192 37.500 7.01 0.00 27.98 2.40
1565 2638 4.024556 CCGATGATGATCAAGTTTAGTGGC 60.025 45.833 0.00 0.00 0.00 5.01
1608 2684 6.539649 TGTACTCTGCAGTTTGTTTATGAC 57.460 37.500 14.67 6.84 33.62 3.06
1609 2685 6.052360 TGTACTCTGCAGTTTGTTTATGACA 58.948 36.000 14.67 9.07 33.23 3.58
1610 2686 5.679734 ACTCTGCAGTTTGTTTATGACAG 57.320 39.130 14.67 0.95 39.94 3.51
1611 2687 5.368145 ACTCTGCAGTTTGTTTATGACAGA 58.632 37.500 14.67 0.00 39.94 3.41
1657 2733 5.880332 TGAGTTATTCAGGTCAACATAAGCC 59.120 40.000 0.00 0.00 0.00 4.35
1709 2785 1.669604 TTGCAAACGTTCTGCTGGTA 58.330 45.000 25.12 10.89 40.59 3.25
1714 2790 0.602905 AACGTTCTGCTGGTAGGTGC 60.603 55.000 0.00 0.00 0.00 5.01
1731 2807 5.211174 AGGTGCTTATCGGATAGGTTAAC 57.789 43.478 8.66 0.00 0.00 2.01
1734 2810 2.660236 GCTTATCGGATAGGTTAACGCG 59.340 50.000 3.53 3.53 0.00 6.01
1753 2829 3.312421 CGCGATTACAGATGGTTGGATTT 59.688 43.478 0.00 0.00 0.00 2.17
1788 2866 5.715434 TTTTCCTTACCCAATTCGAAAGG 57.285 39.130 0.00 7.52 38.44 3.11
1811 2889 5.979517 GGATATACTTTTGCAAACATCCTGC 59.020 40.000 12.39 0.00 40.35 4.85
1812 2890 6.183360 GGATATACTTTTGCAAACATCCTGCT 60.183 38.462 12.39 0.00 40.59 4.24
1813 2891 3.102052 ACTTTTGCAAACATCCTGCTG 57.898 42.857 12.39 0.00 40.59 4.41
1814 2892 2.224113 ACTTTTGCAAACATCCTGCTGG 60.224 45.455 12.39 2.58 40.59 4.85
1815 2893 1.412079 TTTGCAAACATCCTGCTGGT 58.588 45.000 8.05 0.00 40.59 4.00
1816 2894 2.284754 TTGCAAACATCCTGCTGGTA 57.715 45.000 9.73 0.00 40.59 3.25
1817 2895 1.825090 TGCAAACATCCTGCTGGTAG 58.175 50.000 9.73 6.08 40.59 3.18
1818 2896 0.453390 GCAAACATCCTGCTGGTAGC 59.547 55.000 9.73 2.84 42.82 3.58
1826 2904 0.687757 CCTGCTGGTAGCCTGGTAGA 60.688 60.000 0.51 0.00 41.51 2.59
1848 2926 9.944376 GTAGATGCTTATTGGATAGGTTAATGA 57.056 33.333 0.00 0.00 0.00 2.57
1872 2950 7.094248 TGAGATTACAGATGGTTGGATTGTTTG 60.094 37.037 0.00 0.00 0.00 2.93
1885 2963 7.039293 GGTTGGATTGTTTGTAGGGTAGATTTT 60.039 37.037 0.00 0.00 0.00 1.82
1907 2985 1.396996 CTTACCCAATCGAAAGGCACG 59.603 52.381 0.00 0.00 0.00 5.34
2012 3091 5.056553 AGGATTAGAGGACTGAGACCTAC 57.943 47.826 2.88 0.00 37.93 3.18
2013 3092 4.729881 AGGATTAGAGGACTGAGACCTACT 59.270 45.833 2.88 5.92 37.93 2.57
2014 3093 5.067954 GGATTAGAGGACTGAGACCTACTC 58.932 50.000 2.88 0.00 45.11 2.59
2015 3094 4.506937 TTAGAGGACTGAGACCTACTCC 57.493 50.000 2.88 0.00 44.34 3.85
2016 3095 1.567175 AGAGGACTGAGACCTACTCCC 59.433 57.143 2.88 0.00 44.34 4.30
2017 3096 1.567175 GAGGACTGAGACCTACTCCCT 59.433 57.143 2.88 0.00 44.34 4.20
2018 3097 2.004589 AGGACTGAGACCTACTCCCTT 58.995 52.381 0.55 0.00 44.34 3.95
2019 3098 3.199671 AGGACTGAGACCTACTCCCTTA 58.800 50.000 0.55 0.00 44.34 2.69
2020 3099 3.203487 AGGACTGAGACCTACTCCCTTAG 59.797 52.174 0.55 0.00 44.34 2.18
2021 3100 3.053470 GGACTGAGACCTACTCCCTTAGT 60.053 52.174 0.00 0.00 44.34 2.24
2022 3101 4.570292 GGACTGAGACCTACTCCCTTAGTT 60.570 50.000 0.00 0.00 44.34 2.24
2023 3102 4.602107 ACTGAGACCTACTCCCTTAGTTC 58.398 47.826 0.00 0.00 44.34 3.01
2024 3103 3.955551 CTGAGACCTACTCCCTTAGTTCC 59.044 52.174 0.00 0.00 44.34 3.62
2025 3104 3.596956 TGAGACCTACTCCCTTAGTTCCT 59.403 47.826 0.00 0.00 44.34 3.36
2026 3105 4.792426 TGAGACCTACTCCCTTAGTTCCTA 59.208 45.833 0.00 0.00 44.34 2.94
2027 3106 5.254737 TGAGACCTACTCCCTTAGTTCCTAA 59.745 44.000 0.00 0.00 44.34 2.69
2028 3107 6.163110 AGACCTACTCCCTTAGTTCCTAAA 57.837 41.667 0.00 0.00 39.80 1.85
2029 3108 6.754178 AGACCTACTCCCTTAGTTCCTAAAT 58.246 40.000 0.00 0.00 39.80 1.40
2030 3109 7.891328 AGACCTACTCCCTTAGTTCCTAAATA 58.109 38.462 0.00 0.00 39.80 1.40
2031 3110 8.521301 AGACCTACTCCCTTAGTTCCTAAATAT 58.479 37.037 0.00 0.00 39.80 1.28
2032 3111 9.819754 GACCTACTCCCTTAGTTCCTAAATATA 57.180 37.037 0.00 0.00 39.80 0.86
2037 3116 9.725206 ACTCCCTTAGTTCCTAAATATAAGTCA 57.275 33.333 0.00 0.00 33.35 3.41
2058 3137 9.667107 AAGTCATTTTAGAGATTTCAATACGGA 57.333 29.630 0.00 0.00 0.00 4.69
2059 3138 9.099454 AGTCATTTTAGAGATTTCAATACGGAC 57.901 33.333 0.00 0.00 0.00 4.79
2060 3139 9.099454 GTCATTTTAGAGATTTCAATACGGACT 57.901 33.333 0.00 0.00 0.00 3.85
2067 3146 8.234136 AGAGATTTCAATACGGACTACATACA 57.766 34.615 0.00 0.00 0.00 2.29
2068 3147 8.353684 AGAGATTTCAATACGGACTACATACAG 58.646 37.037 0.00 0.00 0.00 2.74
2069 3148 8.234136 AGATTTCAATACGGACTACATACAGA 57.766 34.615 0.00 0.00 0.00 3.41
2070 3149 8.861086 AGATTTCAATACGGACTACATACAGAT 58.139 33.333 0.00 0.00 0.00 2.90
2071 3150 8.818141 ATTTCAATACGGACTACATACAGATG 57.182 34.615 0.00 0.00 39.16 2.90
2073 3152 8.454570 TTCAATACGGACTACATACAGATGTA 57.545 34.615 0.00 0.00 44.77 2.29
2074 3153 8.631480 TCAATACGGACTACATACAGATGTAT 57.369 34.615 0.00 0.00 45.42 2.29
2075 3154 9.729281 TCAATACGGACTACATACAGATGTATA 57.271 33.333 5.21 0.00 45.42 1.47
2080 3159 9.381033 ACGGACTACATACAGATGTATATAGAC 57.619 37.037 19.96 15.03 45.42 2.59
2081 3160 8.828644 CGGACTACATACAGATGTATATAGACC 58.171 40.741 19.96 20.24 45.42 3.85
2082 3161 9.908747 GGACTACATACAGATGTATATAGACCT 57.091 37.037 21.92 6.24 45.42 3.85
2102 3181 6.979238 AGACCTATTTTACAGTGTAGATTCGC 59.021 38.462 2.68 0.00 0.00 4.70
2103 3182 6.875076 ACCTATTTTACAGTGTAGATTCGCT 58.125 36.000 2.68 0.00 0.00 4.93
2104 3183 6.979238 ACCTATTTTACAGTGTAGATTCGCTC 59.021 38.462 2.68 0.00 0.00 5.03
2105 3184 6.978659 CCTATTTTACAGTGTAGATTCGCTCA 59.021 38.462 2.68 0.00 0.00 4.26
2106 3185 7.653713 CCTATTTTACAGTGTAGATTCGCTCAT 59.346 37.037 2.68 0.00 0.00 2.90
2107 3186 7.849804 ATTTTACAGTGTAGATTCGCTCATT 57.150 32.000 2.68 0.00 0.00 2.57
2108 3187 8.942338 ATTTTACAGTGTAGATTCGCTCATTA 57.058 30.769 2.68 0.00 0.00 1.90
2109 3188 7.751047 TTTACAGTGTAGATTCGCTCATTAC 57.249 36.000 2.68 0.00 0.00 1.89
2110 3189 5.584253 ACAGTGTAGATTCGCTCATTACT 57.416 39.130 0.00 0.00 0.00 2.24
2111 3190 5.344066 ACAGTGTAGATTCGCTCATTACTG 58.656 41.667 0.00 0.00 36.73 2.74
2112 3191 4.742167 CAGTGTAGATTCGCTCATTACTGG 59.258 45.833 0.00 0.00 31.72 4.00
2113 3192 4.645136 AGTGTAGATTCGCTCATTACTGGA 59.355 41.667 0.00 0.00 0.00 3.86
2114 3193 5.127194 AGTGTAGATTCGCTCATTACTGGAA 59.873 40.000 0.00 0.00 0.00 3.53
2115 3194 5.986135 GTGTAGATTCGCTCATTACTGGAAT 59.014 40.000 0.00 0.00 0.00 3.01
2116 3195 6.144724 GTGTAGATTCGCTCATTACTGGAATC 59.855 42.308 4.38 4.38 41.91 2.52
2117 3196 5.543507 AGATTCGCTCATTACTGGAATCT 57.456 39.130 8.36 8.36 45.01 2.40
2118 3197 5.537188 AGATTCGCTCATTACTGGAATCTC 58.463 41.667 8.36 0.00 46.13 2.75
2119 3198 5.304101 AGATTCGCTCATTACTGGAATCTCT 59.696 40.000 8.36 0.00 46.13 3.10
2120 3199 6.491745 AGATTCGCTCATTACTGGAATCTCTA 59.508 38.462 8.36 0.00 46.13 2.43
2121 3200 6.465439 TTCGCTCATTACTGGAATCTCTAA 57.535 37.500 0.00 0.00 0.00 2.10
2122 3201 6.465439 TCGCTCATTACTGGAATCTCTAAA 57.535 37.500 0.00 0.00 0.00 1.85
2123 3202 6.873997 TCGCTCATTACTGGAATCTCTAAAA 58.126 36.000 0.00 0.00 0.00 1.52
2124 3203 7.327975 TCGCTCATTACTGGAATCTCTAAAAA 58.672 34.615 0.00 0.00 0.00 1.94
2125 3204 7.492669 TCGCTCATTACTGGAATCTCTAAAAAG 59.507 37.037 0.00 0.00 0.00 2.27
2126 3205 7.492669 CGCTCATTACTGGAATCTCTAAAAAGA 59.507 37.037 0.00 0.00 0.00 2.52
2127 3206 8.608317 GCTCATTACTGGAATCTCTAAAAAGAC 58.392 37.037 0.00 0.00 0.00 3.01
2128 3207 9.883142 CTCATTACTGGAATCTCTAAAAAGACT 57.117 33.333 0.00 0.00 0.00 3.24
2147 3226 9.462606 AAAAGACTTATATTTAGGAACAGTGGG 57.537 33.333 0.00 0.00 0.00 4.61
2148 3227 7.989947 AGACTTATATTTAGGAACAGTGGGA 57.010 36.000 0.00 0.00 0.00 4.37
2149 3228 8.024145 AGACTTATATTTAGGAACAGTGGGAG 57.976 38.462 0.00 0.00 0.00 4.30
2150 3229 7.624077 AGACTTATATTTAGGAACAGTGGGAGT 59.376 37.037 0.00 0.00 0.00 3.85
2151 3230 8.849543 ACTTATATTTAGGAACAGTGGGAGTA 57.150 34.615 0.00 0.00 0.00 2.59
2155 3234 4.884668 TTAGGAACAGTGGGAGTAGTTG 57.115 45.455 0.00 0.00 0.00 3.16
2161 3240 2.110188 ACAGTGGGAGTAGTTGAGAGGA 59.890 50.000 0.00 0.00 0.00 3.71
2251 3340 2.113139 ACTTCCAGTGGCCCAACG 59.887 61.111 3.51 0.00 0.00 4.10
2306 3395 3.394274 TCCAAGTCCAGAGGAAACATGAA 59.606 43.478 0.00 0.00 31.38 2.57
2313 3402 4.588106 TCCAGAGGAAACATGAATTTTGCA 59.412 37.500 0.00 0.00 0.00 4.08
2319 3408 7.011669 AGAGGAAACATGAATTTTGCAAAGTTG 59.988 33.333 22.77 12.83 0.00 3.16
2328 3417 2.582728 TTGCAAAGTTGTGGCTTCAG 57.417 45.000 0.00 0.00 0.00 3.02
2457 3557 2.949177 AGTATAATTGATGCGCCCCA 57.051 45.000 4.18 0.00 0.00 4.96
2472 3572 1.408822 GCCCCAAATCCTCCAGTACTG 60.409 57.143 16.34 16.34 0.00 2.74
2477 3577 4.446371 CCAAATCCTCCAGTACTGTGATC 58.554 47.826 21.18 0.00 0.00 2.92
2555 3655 3.243068 CGACTTGCTTGCTTTGGTTAAGT 60.243 43.478 0.00 0.00 36.19 2.24
2565 3665 7.539022 GCTTGCTTTGGTTAAGTCTAAGAAATC 59.461 37.037 0.00 0.00 36.19 2.17
2702 3802 7.615582 TCTATTTAACAGGACAGCAATGAAG 57.384 36.000 0.00 0.00 0.00 3.02
2718 3819 1.152902 AAGCAGCCTGTTCAGTGCA 60.153 52.632 14.58 0.00 38.44 4.57
2752 3853 6.127703 GGCCCATCTCTCATTCATCATATTTG 60.128 42.308 0.00 0.00 0.00 2.32
2836 3937 6.789268 TCAGAAATTTGTCTCTTTATCCCCA 58.211 36.000 0.00 0.00 0.00 4.96
3027 4219 8.195436 TGGCTGTGAGTACTAGTTAATAACATC 58.805 37.037 0.00 0.00 0.00 3.06
3099 4302 8.783093 TGACTCCAAGTGAAATTAATTGTACTG 58.217 33.333 14.72 10.43 0.00 2.74
3170 4373 7.869016 TTCGTTAATATCAGTCCGATGATTC 57.131 36.000 3.58 0.00 40.40 2.52
3220 4423 7.438160 CACAATTCAGTGAAGTAACTCTGTGTA 59.562 37.037 11.91 0.00 42.05 2.90
3233 4436 1.964933 TCTGTGTACATTCACCGGACA 59.035 47.619 9.46 0.00 37.51 4.02
3249 4452 4.224370 ACCGGACACTTAATATGGTTGAGT 59.776 41.667 9.46 0.00 0.00 3.41
3252 4455 6.150474 CCGGACACTTAATATGGTTGAGTTTT 59.850 38.462 0.00 0.00 0.00 2.43
3338 4542 7.981789 TGTATATTGTTTTTGGTTGCTGTGAAA 59.018 29.630 0.00 0.00 0.00 2.69
3339 4543 7.856145 ATATTGTTTTTGGTTGCTGTGAAAA 57.144 28.000 0.00 0.00 0.00 2.29
3375 4579 2.033299 GTGCTTGCTGCTTTGTGTCTTA 59.967 45.455 0.00 0.00 43.37 2.10
3385 4593 5.868257 TGCTTTGTGTCTTATTCTATTGCG 58.132 37.500 0.00 0.00 0.00 4.85
3387 4595 6.316140 TGCTTTGTGTCTTATTCTATTGCGAT 59.684 34.615 0.00 0.00 0.00 4.58
3413 4621 0.724549 TGGATCGTGTGCGTTATTGC 59.275 50.000 0.00 0.00 39.49 3.56
3449 4657 6.015772 GCAAAGTAACCCCAAAATCTTCACTA 60.016 38.462 0.00 0.00 0.00 2.74
3570 4782 6.594159 AGTTCCACTCACATTTAATCTTACCG 59.406 38.462 0.00 0.00 0.00 4.02
3574 4786 6.194463 CACTCACATTTAATCTTACCGCATG 58.806 40.000 0.00 0.00 0.00 4.06
3837 5050 2.821366 CTGTTGCAGGCTAGCCCG 60.821 66.667 30.42 21.94 39.21 6.13
3855 5068 3.878778 CCCGTCAGATCCAGAGAATTTT 58.121 45.455 0.00 0.00 0.00 1.82
4151 5364 8.443953 AATGAACCTGAAGAAGATATGTAAGC 57.556 34.615 0.00 0.00 0.00 3.09
4166 5379 5.869753 ATGTAAGCTTACTTCTTGCAGTG 57.130 39.130 31.14 0.00 39.00 3.66
4190 5403 4.614555 TGCATTGTATACGCAAAAGGAG 57.385 40.909 1.93 0.00 31.46 3.69
4198 5411 8.780846 TTGTATACGCAAAAGGAGAATTCTTA 57.219 30.769 9.87 0.00 0.00 2.10
4201 5414 7.923414 ATACGCAAAAGGAGAATTCTTACTT 57.077 32.000 9.87 13.88 0.00 2.24
4202 5415 6.002062 ACGCAAAAGGAGAATTCTTACTTG 57.998 37.500 20.41 16.33 0.00 3.16
4219 5432 7.848128 TCTTACTTGATTATTTTCCTCGGAGT 58.152 34.615 4.02 0.00 0.00 3.85
4251 5464 5.784750 TTCGAAATAGCAACACAGAGATG 57.215 39.130 0.00 0.00 0.00 2.90
4252 5465 3.618594 TCGAAATAGCAACACAGAGATGC 59.381 43.478 0.00 0.00 45.50 3.91
4356 5572 2.244651 GCAACAACGCTCGTCAGGT 61.245 57.895 0.00 0.00 0.00 4.00
4384 5600 4.100279 TGCTAGAAGATACGGATCCTCA 57.900 45.455 10.75 0.00 31.81 3.86
4385 5601 4.075682 TGCTAGAAGATACGGATCCTCAG 58.924 47.826 10.75 5.43 31.81 3.35
4386 5602 4.076394 GCTAGAAGATACGGATCCTCAGT 58.924 47.826 10.75 2.90 31.81 3.41
4387 5603 4.083003 GCTAGAAGATACGGATCCTCAGTG 60.083 50.000 10.75 0.00 31.81 3.66
4388 5604 3.904717 AGAAGATACGGATCCTCAGTGT 58.095 45.455 10.75 2.10 31.81 3.55
4389 5605 3.886505 AGAAGATACGGATCCTCAGTGTC 59.113 47.826 10.75 8.41 34.14 3.67
4390 5606 2.222886 AGATACGGATCCTCAGTGTCG 58.777 52.381 10.75 0.00 37.65 4.35
4391 5607 1.267261 GATACGGATCCTCAGTGTCGG 59.733 57.143 10.75 0.00 0.00 4.79
4392 5608 0.034767 TACGGATCCTCAGTGTCGGT 60.035 55.000 10.75 0.00 0.00 4.69
4506 5743 4.553547 GCGAGATGGGAGAAATTTCATTCG 60.554 45.833 19.99 15.97 34.46 3.34
4510 5747 7.517417 CGAGATGGGAGAAATTTCATTCGTAAG 60.517 40.741 19.99 1.42 34.46 2.34
4539 5776 7.716612 TGATTCTTTCTATGAGCGTTAGATGA 58.283 34.615 0.00 0.00 0.00 2.92
4547 5784 8.148807 TCTATGAGCGTTAGATGATATAGAGC 57.851 38.462 0.00 0.00 0.00 4.09
4658 5897 1.154197 GTACAGAAGAACGGCCCAAC 58.846 55.000 0.00 0.00 0.00 3.77
4663 5902 0.526211 GAAGAACGGCCCAACATTCC 59.474 55.000 0.00 0.00 0.00 3.01
4666 5905 1.595093 GAACGGCCCAACATTCCTGG 61.595 60.000 0.00 0.00 0.00 4.45
4673 5912 1.895131 CCCAACATTCCTGGTTTCCTG 59.105 52.381 0.00 0.00 31.45 3.86
4736 5975 9.014297 CATATATGGTTCTTCTTTTACCCATCC 57.986 37.037 4.68 0.00 34.64 3.51
4742 5982 6.493802 GGTTCTTCTTTTACCCATCCTTTTCT 59.506 38.462 0.00 0.00 0.00 2.52
4747 5987 8.547481 TTCTTTTACCCATCCTTTTCTTTTCT 57.453 30.769 0.00 0.00 0.00 2.52
4754 5994 6.197903 CCCATCCTTTTCTTTTCTATTCCCT 58.802 40.000 0.00 0.00 0.00 4.20
4768 6008 6.439636 TCTATTCCCTTCTTCCATGGTATG 57.560 41.667 12.58 3.38 0.00 2.39
4818 6058 7.043854 CGATTTTCATTTCTGTGTATTCATGCC 60.044 37.037 0.00 0.00 0.00 4.40
4821 6061 5.423886 TCATTTCTGTGTATTCATGCCGTA 58.576 37.500 0.00 0.00 0.00 4.02
4926 6172 9.472361 CATTTATCAAATTTCTGGATGGATCAC 57.528 33.333 0.00 0.00 0.00 3.06
4956 6202 5.422666 TTCAATGAGTGCTACAGTTTGTG 57.577 39.130 0.00 0.00 0.00 3.33
4971 6217 6.092748 ACAGTTTGTGTTGATTTCTGTTGTC 58.907 36.000 0.00 0.00 34.94 3.18
5040 6318 1.384222 ATTGGATTCGCCTTTCCCGC 61.384 55.000 0.00 0.00 37.63 6.13
5084 6364 2.286713 TGCAAAACGACCAACTCATTCG 60.287 45.455 0.00 0.00 38.73 3.34
5109 6389 3.384789 CCCTACTACAGAGCAGCAACATA 59.615 47.826 0.00 0.00 0.00 2.29
5110 6390 4.039730 CCCTACTACAGAGCAGCAACATAT 59.960 45.833 0.00 0.00 0.00 1.78
5128 6408 6.346477 ACATATCTGGTCTATATTGCGTGT 57.654 37.500 0.00 0.00 0.00 4.49
5132 6412 3.955551 TCTGGTCTATATTGCGTGTGGTA 59.044 43.478 0.00 0.00 0.00 3.25
5138 6418 2.267188 TATTGCGTGTGGTACTCGTC 57.733 50.000 5.51 0.09 37.41 4.20
5207 6487 1.126479 CAAATCAACAATTTGCCCGCG 59.874 47.619 0.00 0.00 45.66 6.46
5223 6503 2.044860 CCGCGTCGATCAGAATTAGAC 58.955 52.381 4.92 0.00 0.00 2.59
5250 6530 2.147958 CACCAAAAGTTGCGGTAGCTA 58.852 47.619 0.00 0.00 45.42 3.32
5267 6547 6.317391 CGGTAGCTACTAAGTAAACTACACCT 59.683 42.308 22.74 0.00 33.30 4.00
5301 6581 2.223479 CCAAACTGGAGTGGTTTCGTTG 60.223 50.000 0.00 0.00 40.96 4.10
5344 6625 0.036306 AAACGGGTAGGAGGTTGCAG 59.964 55.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.081892 CTTCCAAGCATGACACCGAG 58.918 55.000 0.00 0.00 0.00 4.63
1 2 0.684535 TCTTCCAAGCATGACACCGA 59.315 50.000 0.00 0.00 0.00 4.69
2 3 1.522668 TTCTTCCAAGCATGACACCG 58.477 50.000 0.00 0.00 0.00 4.94
49 50 1.666054 CCTGGCTCTTGCTCTGAATC 58.334 55.000 0.00 0.00 39.59 2.52
50 51 0.255318 CCCTGGCTCTTGCTCTGAAT 59.745 55.000 0.00 0.00 39.59 2.57
56 57 1.127343 GTATCTCCCTGGCTCTTGCT 58.873 55.000 0.00 0.00 39.59 3.91
58 59 2.114616 ACTGTATCTCCCTGGCTCTTG 58.885 52.381 0.00 0.00 0.00 3.02
78 79 1.134220 GGTCCAACGAATCCATGCCTA 60.134 52.381 0.00 0.00 0.00 3.93
250 265 0.603439 TAAACCGACCGGCACCTTTC 60.603 55.000 8.55 0.00 39.32 2.62
294 309 6.808829 ACATTGGCATGTACTAATGGAAATG 58.191 36.000 11.97 0.00 42.24 2.32
295 310 7.342799 AGAACATTGGCATGTACTAATGGAAAT 59.657 33.333 11.97 0.00 43.34 2.17
301 316 7.998383 TCCATAAGAACATTGGCATGTACTAAT 59.002 33.333 0.00 0.00 43.34 1.73
303 318 6.894682 TCCATAAGAACATTGGCATGTACTA 58.105 36.000 0.00 0.00 43.34 1.82
304 319 5.754782 TCCATAAGAACATTGGCATGTACT 58.245 37.500 0.00 0.00 43.34 2.73
305 320 5.506317 GCTCCATAAGAACATTGGCATGTAC 60.506 44.000 0.00 0.00 43.34 2.90
325 342 4.760204 ACACACCTAATGTTTGTTAGCTCC 59.240 41.667 0.00 0.00 40.64 4.70
350 367 3.127030 CGTTTGGTTTGAGGGCTAAGATC 59.873 47.826 0.00 0.00 0.00 2.75
373 985 1.382146 AATGAATGCAGGCAGGGGG 60.382 57.895 0.00 0.00 0.00 5.40
393 1005 6.468319 CAGATTTTGCGAAGAAAGATAAGCTG 59.532 38.462 0.00 0.00 0.00 4.24
400 1012 7.152645 ACTACTACAGATTTTGCGAAGAAAGA 58.847 34.615 0.00 0.00 0.00 2.52
410 1022 6.631016 TCTGCACCTACTACTACAGATTTTG 58.369 40.000 0.00 0.00 0.00 2.44
422 1034 4.077108 TCTCTTTCGTTCTGCACCTACTA 58.923 43.478 0.00 0.00 0.00 1.82
423 1035 2.891580 TCTCTTTCGTTCTGCACCTACT 59.108 45.455 0.00 0.00 0.00 2.57
425 1037 4.537135 AATCTCTTTCGTTCTGCACCTA 57.463 40.909 0.00 0.00 0.00 3.08
434 1046 8.336806 CGACTACTATCTGTAATCTCTTTCGTT 58.663 37.037 0.00 0.00 0.00 3.85
436 1048 7.171167 TCCGACTACTATCTGTAATCTCTTTCG 59.829 40.741 0.00 0.00 0.00 3.46
445 1057 4.375272 CCGAGTCCGACTACTATCTGTAA 58.625 47.826 0.00 0.00 38.22 2.41
446 1058 3.244009 CCCGAGTCCGACTACTATCTGTA 60.244 52.174 0.00 0.00 38.22 2.74
451 1063 0.182061 TGCCCGAGTCCGACTACTAT 59.818 55.000 0.00 0.00 38.22 2.12
454 1066 0.745845 TACTGCCCGAGTCCGACTAC 60.746 60.000 0.00 0.00 38.22 2.73
462 1074 0.108138 GAGCAATGTACTGCCCGAGT 60.108 55.000 3.63 0.00 43.73 4.18
463 1075 0.811616 GGAGCAATGTACTGCCCGAG 60.812 60.000 3.63 0.00 43.73 4.63
464 1076 1.220749 GGAGCAATGTACTGCCCGA 59.779 57.895 3.63 0.00 43.73 5.14
465 1077 0.464373 ATGGAGCAATGTACTGCCCG 60.464 55.000 3.63 0.00 43.73 6.13
466 1078 1.678101 GAATGGAGCAATGTACTGCCC 59.322 52.381 3.63 5.79 43.73 5.36
467 1079 2.648059 AGAATGGAGCAATGTACTGCC 58.352 47.619 3.63 0.00 43.73 4.85
468 1080 4.708726 AAAGAATGGAGCAATGTACTGC 57.291 40.909 0.00 0.00 42.97 4.40
498 1110 0.109723 TGCCCTACTGCCGACTTTTT 59.890 50.000 0.00 0.00 0.00 1.94
499 1111 0.605589 GTGCCCTACTGCCGACTTTT 60.606 55.000 0.00 0.00 0.00 2.27
500 1112 1.003718 GTGCCCTACTGCCGACTTT 60.004 57.895 0.00 0.00 0.00 2.66
501 1113 1.889530 GAGTGCCCTACTGCCGACTT 61.890 60.000 0.00 0.00 40.53 3.01
502 1114 2.283966 AGTGCCCTACTGCCGACT 60.284 61.111 0.00 0.00 38.49 4.18
503 1115 2.184579 GAGTGCCCTACTGCCGAC 59.815 66.667 0.00 0.00 40.53 4.79
504 1116 3.449227 CGAGTGCCCTACTGCCGA 61.449 66.667 0.00 0.00 40.53 5.54
505 1117 3.417275 CTCGAGTGCCCTACTGCCG 62.417 68.421 3.62 0.00 40.53 5.69
506 1118 2.052690 TCTCGAGTGCCCTACTGCC 61.053 63.158 13.13 0.00 40.53 4.85
507 1119 1.139947 GTCTCGAGTGCCCTACTGC 59.860 63.158 13.13 0.00 40.53 4.40
508 1120 0.171455 GTGTCTCGAGTGCCCTACTG 59.829 60.000 13.13 0.00 40.53 2.74
509 1121 0.966370 GGTGTCTCGAGTGCCCTACT 60.966 60.000 13.13 0.00 44.02 2.57
510 1122 1.511768 GGTGTCTCGAGTGCCCTAC 59.488 63.158 13.13 2.33 0.00 3.18
511 1123 2.044555 CGGTGTCTCGAGTGCCCTA 61.045 63.158 13.13 0.00 0.00 3.53
512 1124 3.374402 CGGTGTCTCGAGTGCCCT 61.374 66.667 13.13 0.00 0.00 5.19
513 1125 3.681835 ACGGTGTCTCGAGTGCCC 61.682 66.667 13.13 9.36 0.00 5.36
514 1126 2.430921 CACGGTGTCTCGAGTGCC 60.431 66.667 13.13 11.78 0.00 5.01
589 1201 8.746530 ACAAGTATGAGCTTGATCATTCAAATT 58.253 29.630 12.05 0.00 46.34 1.82
591 1203 7.692460 ACAAGTATGAGCTTGATCATTCAAA 57.308 32.000 12.05 0.00 46.34 2.69
594 1206 6.989169 ACCTACAAGTATGAGCTTGATCATTC 59.011 38.462 12.05 2.35 46.34 2.67
595 1207 6.893583 ACCTACAAGTATGAGCTTGATCATT 58.106 36.000 12.05 0.00 46.34 2.57
596 1208 6.491714 ACCTACAAGTATGAGCTTGATCAT 57.508 37.500 12.05 6.61 46.34 2.45
597 1209 5.939764 ACCTACAAGTATGAGCTTGATCA 57.060 39.130 12.05 0.00 46.34 2.92
598 1210 7.045126 ACTACCTACAAGTATGAGCTTGATC 57.955 40.000 12.05 0.00 46.34 2.92
599 1211 7.560262 TGTACTACCTACAAGTATGAGCTTGAT 59.440 37.037 12.05 0.00 46.34 2.57
600 1212 6.888088 TGTACTACCTACAAGTATGAGCTTGA 59.112 38.462 12.05 0.00 46.34 3.02
602 1214 7.117397 TCTGTACTACCTACAAGTATGAGCTT 58.883 38.462 0.00 0.00 34.80 3.74
603 1215 6.660800 TCTGTACTACCTACAAGTATGAGCT 58.339 40.000 0.00 0.00 34.80 4.09
604 1216 6.513720 GCTCTGTACTACCTACAAGTATGAGC 60.514 46.154 17.16 17.16 43.30 4.26
605 1217 6.016943 GGCTCTGTACTACCTACAAGTATGAG 60.017 46.154 0.00 0.00 34.80 2.90
642 1254 4.314522 TTGATTGGGACAGGCAGATTTA 57.685 40.909 0.00 0.00 42.39 1.40
689 1301 7.218204 GCAGTATTGTTTCATTATTTGTCGTCC 59.782 37.037 0.00 0.00 0.00 4.79
695 1307 9.069078 CAGACAGCAGTATTGTTTCATTATTTG 57.931 33.333 0.00 0.00 0.00 2.32
702 1314 4.751600 CAGACAGACAGCAGTATTGTTTCA 59.248 41.667 1.32 0.00 0.00 2.69
703 1315 4.752101 ACAGACAGACAGCAGTATTGTTTC 59.248 41.667 1.32 0.00 0.00 2.78
746 1583 2.091588 CGGGCGAATTATTATTCCGTCG 59.908 50.000 0.00 0.00 37.46 5.12
784 1621 4.780554 TCCACCTGTATCTGTATGTTTGGA 59.219 41.667 0.00 0.00 0.00 3.53
791 1628 1.964223 CGCCTCCACCTGTATCTGTAT 59.036 52.381 0.00 0.00 0.00 2.29
792 1629 1.399714 CGCCTCCACCTGTATCTGTA 58.600 55.000 0.00 0.00 0.00 2.74
793 1630 1.330655 CCGCCTCCACCTGTATCTGT 61.331 60.000 0.00 0.00 0.00 3.41
794 1631 1.043116 TCCGCCTCCACCTGTATCTG 61.043 60.000 0.00 0.00 0.00 2.90
795 1632 0.757188 CTCCGCCTCCACCTGTATCT 60.757 60.000 0.00 0.00 0.00 1.98
798 1635 3.075005 GCTCCGCCTCCACCTGTA 61.075 66.667 0.00 0.00 0.00 2.74
830 1667 2.115343 AGGAGAAGGATCGGTTTTGC 57.885 50.000 0.00 0.00 0.00 3.68
842 1691 2.221055 CGTTGTCACGGAAAAGGAGAAG 59.779 50.000 0.00 0.00 43.16 2.85
883 1732 0.249405 TTTGGCCTTTGCTTTGCTCG 60.249 50.000 3.32 0.00 37.74 5.03
884 1733 1.220529 GTTTGGCCTTTGCTTTGCTC 58.779 50.000 3.32 0.00 37.74 4.26
893 1742 0.032615 TGTGGTCTGGTTTGGCCTTT 60.033 50.000 3.32 0.00 38.35 3.11
911 1760 2.472488 GGAAGATTTTTGCGCTGTGTTG 59.528 45.455 9.73 0.00 0.00 3.33
912 1761 2.545742 GGGAAGATTTTTGCGCTGTGTT 60.546 45.455 9.73 0.00 0.00 3.32
933 1782 2.318908 CTGAGGAGGAGGAAGGAGATG 58.681 57.143 0.00 0.00 0.00 2.90
936 1785 1.048160 GGCTGAGGAGGAGGAAGGAG 61.048 65.000 0.00 0.00 0.00 3.69
937 1786 1.002274 GGCTGAGGAGGAGGAAGGA 59.998 63.158 0.00 0.00 0.00 3.36
939 1788 2.069430 GGGGCTGAGGAGGAGGAAG 61.069 68.421 0.00 0.00 0.00 3.46
940 1789 2.041265 GGGGCTGAGGAGGAGGAA 59.959 66.667 0.00 0.00 0.00 3.36
1012 1880 2.176273 CCTTGAGGAGCATTCGCCG 61.176 63.158 0.00 0.00 39.83 6.46
1130 2025 2.299993 TGGCGATCATCAGAGAACAC 57.700 50.000 0.00 0.00 0.00 3.32
1142 2037 2.029666 CCGACCCTGATGGCGATC 59.970 66.667 1.08 1.08 37.83 3.69
1143 2038 3.550431 CCCGACCCTGATGGCGAT 61.550 66.667 0.00 0.00 37.83 4.58
1144 2039 4.770362 TCCCGACCCTGATGGCGA 62.770 66.667 0.00 0.00 37.83 5.54
1193 2088 0.742281 CAGACAGGGCGAGATTGGTG 60.742 60.000 0.00 0.00 0.00 4.17
1194 2089 0.904865 TCAGACAGGGCGAGATTGGT 60.905 55.000 0.00 0.00 0.00 3.67
1195 2090 0.467384 ATCAGACAGGGCGAGATTGG 59.533 55.000 0.00 0.00 0.00 3.16
1229 2124 0.034477 AAACCCCCGCACAGGAATAG 60.034 55.000 0.00 0.00 45.00 1.73
1234 2129 2.203422 TTCAAACCCCCGCACAGG 60.203 61.111 0.00 0.00 40.63 4.00
1270 2166 0.531090 TGTTGACGTACCTGCACACC 60.531 55.000 0.00 0.00 0.00 4.16
1271 2167 1.004292 GTTGTTGACGTACCTGCACAC 60.004 52.381 0.00 0.00 0.00 3.82
1401 2331 4.273480 CCCAGAGCTAATTATCCGTTTGTG 59.727 45.833 0.00 0.00 0.00 3.33
1405 2335 3.454812 ACACCCAGAGCTAATTATCCGTT 59.545 43.478 0.00 0.00 0.00 4.44
1406 2336 3.039011 ACACCCAGAGCTAATTATCCGT 58.961 45.455 0.00 0.00 0.00 4.69
1408 2338 7.676947 TGTAATACACCCAGAGCTAATTATCC 58.323 38.462 0.00 0.00 0.00 2.59
1409 2339 9.372369 GATGTAATACACCCAGAGCTAATTATC 57.628 37.037 0.00 0.00 0.00 1.75
1410 2340 9.105844 AGATGTAATACACCCAGAGCTAATTAT 57.894 33.333 0.00 0.00 0.00 1.28
1432 2387 7.517417 GCATAGAATCCGTTAGTGTTCAAGATG 60.517 40.741 0.00 0.00 0.00 2.90
1433 2388 6.480320 GCATAGAATCCGTTAGTGTTCAAGAT 59.520 38.462 0.00 0.00 0.00 2.40
1434 2389 5.810587 GCATAGAATCCGTTAGTGTTCAAGA 59.189 40.000 0.00 0.00 0.00 3.02
1435 2390 5.812642 AGCATAGAATCCGTTAGTGTTCAAG 59.187 40.000 0.00 0.00 0.00 3.02
1436 2391 5.580691 CAGCATAGAATCCGTTAGTGTTCAA 59.419 40.000 0.00 0.00 0.00 2.69
1437 2392 5.109210 CAGCATAGAATCCGTTAGTGTTCA 58.891 41.667 0.00 0.00 0.00 3.18
1497 2458 6.708054 ACACTAACCAGAGAATGAGAACTTTG 59.292 38.462 0.00 0.00 0.00 2.77
1565 2638 5.997384 ACAAGGGTCCTAGTTTAGTACTG 57.003 43.478 5.39 0.00 37.73 2.74
1608 2684 3.475566 TCAACCTTCTCAACCTGTCTG 57.524 47.619 0.00 0.00 0.00 3.51
1609 2685 4.505742 GGAATCAACCTTCTCAACCTGTCT 60.506 45.833 0.00 0.00 0.00 3.41
1610 2686 3.753797 GGAATCAACCTTCTCAACCTGTC 59.246 47.826 0.00 0.00 0.00 3.51
1611 2687 3.395941 AGGAATCAACCTTCTCAACCTGT 59.604 43.478 0.00 0.00 36.86 4.00
1709 2785 4.261909 CGTTAACCTATCCGATAAGCACCT 60.262 45.833 0.00 0.00 0.00 4.00
1714 2790 4.151258 TCGCGTTAACCTATCCGATAAG 57.849 45.455 5.77 0.00 0.00 1.73
1731 2807 1.934589 TCCAACCATCTGTAATCGCG 58.065 50.000 0.00 0.00 0.00 5.87
1762 2838 7.338449 CCTTTCGAATTGGGTAAGGAAAATCTA 59.662 37.037 13.33 0.00 38.05 1.98
1763 2839 6.152831 CCTTTCGAATTGGGTAAGGAAAATCT 59.847 38.462 13.33 0.00 38.05 2.40
1764 2840 6.152154 TCCTTTCGAATTGGGTAAGGAAAATC 59.848 38.462 16.72 0.00 40.90 2.17
1765 2841 6.014012 TCCTTTCGAATTGGGTAAGGAAAAT 58.986 36.000 16.72 0.00 40.90 1.82
1766 2842 5.386924 TCCTTTCGAATTGGGTAAGGAAAA 58.613 37.500 16.72 2.36 40.90 2.29
1770 2846 7.450903 AGTATATCCTTTCGAATTGGGTAAGG 58.549 38.462 12.68 8.64 37.34 2.69
1788 2866 6.694411 CAGCAGGATGTTTGCAAAAGTATATC 59.306 38.462 14.67 12.01 43.92 1.63
1811 2889 1.418334 AGCATCTACCAGGCTACCAG 58.582 55.000 0.00 0.00 35.82 4.00
1812 2890 1.879575 AAGCATCTACCAGGCTACCA 58.120 50.000 0.00 0.00 36.76 3.25
1813 2891 4.319177 CAATAAGCATCTACCAGGCTACC 58.681 47.826 0.00 0.00 36.76 3.18
1814 2892 4.040461 TCCAATAAGCATCTACCAGGCTAC 59.960 45.833 0.00 0.00 36.76 3.58
1815 2893 4.231273 TCCAATAAGCATCTACCAGGCTA 58.769 43.478 0.00 0.00 36.76 3.93
1816 2894 3.048600 TCCAATAAGCATCTACCAGGCT 58.951 45.455 0.00 0.00 40.14 4.58
1817 2895 3.492102 TCCAATAAGCATCTACCAGGC 57.508 47.619 0.00 0.00 0.00 4.85
1818 2896 5.249393 ACCTATCCAATAAGCATCTACCAGG 59.751 44.000 0.00 0.00 0.00 4.45
1848 2926 6.721208 ACAAACAATCCAACCATCTGTAATCT 59.279 34.615 0.00 0.00 0.00 2.40
1885 2963 1.631388 TGCCTTTCGATTGGGTAAGGA 59.369 47.619 14.16 0.00 39.60 3.36
2032 3111 9.667107 TCCGTATTGAAATCTCTAAAATGACTT 57.333 29.630 0.00 0.00 0.00 3.01
2033 3112 9.099454 GTCCGTATTGAAATCTCTAAAATGACT 57.901 33.333 0.00 0.00 0.00 3.41
2034 3113 9.099454 AGTCCGTATTGAAATCTCTAAAATGAC 57.901 33.333 0.00 0.00 0.00 3.06
2041 3120 9.346005 TGTATGTAGTCCGTATTGAAATCTCTA 57.654 33.333 0.00 0.00 0.00 2.43
2042 3121 8.234136 TGTATGTAGTCCGTATTGAAATCTCT 57.766 34.615 0.00 0.00 0.00 3.10
2043 3122 8.350722 TCTGTATGTAGTCCGTATTGAAATCTC 58.649 37.037 0.00 0.00 0.00 2.75
2044 3123 8.234136 TCTGTATGTAGTCCGTATTGAAATCT 57.766 34.615 0.00 0.00 0.00 2.40
2045 3124 8.916654 CATCTGTATGTAGTCCGTATTGAAATC 58.083 37.037 0.00 0.00 0.00 2.17
2046 3125 8.421784 ACATCTGTATGTAGTCCGTATTGAAAT 58.578 33.333 0.00 0.00 44.66 2.17
2047 3126 7.778083 ACATCTGTATGTAGTCCGTATTGAAA 58.222 34.615 0.00 0.00 44.66 2.69
2048 3127 7.342769 ACATCTGTATGTAGTCCGTATTGAA 57.657 36.000 0.00 0.00 44.66 2.69
2049 3128 6.954487 ACATCTGTATGTAGTCCGTATTGA 57.046 37.500 0.00 0.00 44.66 2.57
2076 3155 8.133627 GCGAATCTACACTGTAAAATAGGTCTA 58.866 37.037 0.00 0.00 0.00 2.59
2077 3156 6.979238 GCGAATCTACACTGTAAAATAGGTCT 59.021 38.462 0.00 0.00 0.00 3.85
2078 3157 6.979238 AGCGAATCTACACTGTAAAATAGGTC 59.021 38.462 0.00 0.00 0.00 3.85
2079 3158 6.875076 AGCGAATCTACACTGTAAAATAGGT 58.125 36.000 0.00 0.00 0.00 3.08
2080 3159 6.978659 TGAGCGAATCTACACTGTAAAATAGG 59.021 38.462 0.00 0.00 0.00 2.57
2081 3160 7.987268 TGAGCGAATCTACACTGTAAAATAG 57.013 36.000 0.00 0.00 0.00 1.73
2082 3161 8.942338 AATGAGCGAATCTACACTGTAAAATA 57.058 30.769 0.00 0.00 0.00 1.40
2083 3162 7.849804 AATGAGCGAATCTACACTGTAAAAT 57.150 32.000 0.00 0.00 0.00 1.82
2084 3163 8.033038 AGTAATGAGCGAATCTACACTGTAAAA 58.967 33.333 0.00 0.00 0.00 1.52
2085 3164 7.488150 CAGTAATGAGCGAATCTACACTGTAAA 59.512 37.037 0.00 0.00 31.43 2.01
2086 3165 6.972901 CAGTAATGAGCGAATCTACACTGTAA 59.027 38.462 0.00 0.00 31.43 2.41
2087 3166 6.459710 CCAGTAATGAGCGAATCTACACTGTA 60.460 42.308 0.00 0.00 32.84 2.74
2088 3167 5.344066 CAGTAATGAGCGAATCTACACTGT 58.656 41.667 0.00 0.00 31.43 3.55
2089 3168 4.742167 CCAGTAATGAGCGAATCTACACTG 59.258 45.833 0.00 0.00 33.69 3.66
2090 3169 4.645136 TCCAGTAATGAGCGAATCTACACT 59.355 41.667 0.00 0.00 0.00 3.55
2091 3170 4.933330 TCCAGTAATGAGCGAATCTACAC 58.067 43.478 0.00 0.00 0.00 2.90
2092 3171 5.592104 TTCCAGTAATGAGCGAATCTACA 57.408 39.130 0.00 0.00 0.00 2.74
2093 3172 6.451393 AGATTCCAGTAATGAGCGAATCTAC 58.549 40.000 16.48 0.00 44.48 2.59
2094 3173 6.491745 AGAGATTCCAGTAATGAGCGAATCTA 59.508 38.462 17.43 0.00 45.63 1.98
2095 3174 5.543507 AGATTCCAGTAATGAGCGAATCT 57.456 39.130 13.82 13.82 42.59 2.40
2096 3175 5.537188 AGAGATTCCAGTAATGAGCGAATC 58.463 41.667 10.70 10.70 39.28 2.52
2097 3176 5.543507 AGAGATTCCAGTAATGAGCGAAT 57.456 39.130 0.00 0.00 0.00 3.34
2098 3177 6.465439 TTAGAGATTCCAGTAATGAGCGAA 57.535 37.500 0.00 0.00 0.00 4.70
2099 3178 6.465439 TTTAGAGATTCCAGTAATGAGCGA 57.535 37.500 0.00 0.00 0.00 4.93
2100 3179 7.492669 TCTTTTTAGAGATTCCAGTAATGAGCG 59.507 37.037 0.00 0.00 0.00 5.03
2101 3180 8.608317 GTCTTTTTAGAGATTCCAGTAATGAGC 58.392 37.037 0.00 0.00 0.00 4.26
2102 3181 9.883142 AGTCTTTTTAGAGATTCCAGTAATGAG 57.117 33.333 0.00 0.00 0.00 2.90
2121 3200 9.462606 CCCACTGTTCCTAAATATAAGTCTTTT 57.537 33.333 0.00 0.00 0.00 2.27
2122 3201 8.832735 TCCCACTGTTCCTAAATATAAGTCTTT 58.167 33.333 0.00 0.00 0.00 2.52
2123 3202 8.388656 TCCCACTGTTCCTAAATATAAGTCTT 57.611 34.615 0.00 0.00 0.00 3.01
2124 3203 7.624077 ACTCCCACTGTTCCTAAATATAAGTCT 59.376 37.037 0.00 0.00 0.00 3.24
2125 3204 7.793036 ACTCCCACTGTTCCTAAATATAAGTC 58.207 38.462 0.00 0.00 0.00 3.01
2126 3205 7.750947 ACTCCCACTGTTCCTAAATATAAGT 57.249 36.000 0.00 0.00 0.00 2.24
2127 3206 8.925338 ACTACTCCCACTGTTCCTAAATATAAG 58.075 37.037 0.00 0.00 0.00 1.73
2128 3207 8.849543 ACTACTCCCACTGTTCCTAAATATAA 57.150 34.615 0.00 0.00 0.00 0.98
2129 3208 8.701895 CAACTACTCCCACTGTTCCTAAATATA 58.298 37.037 0.00 0.00 0.00 0.86
2130 3209 7.402071 TCAACTACTCCCACTGTTCCTAAATAT 59.598 37.037 0.00 0.00 0.00 1.28
2131 3210 6.727231 TCAACTACTCCCACTGTTCCTAAATA 59.273 38.462 0.00 0.00 0.00 1.40
2132 3211 5.546499 TCAACTACTCCCACTGTTCCTAAAT 59.454 40.000 0.00 0.00 0.00 1.40
2133 3212 4.903049 TCAACTACTCCCACTGTTCCTAAA 59.097 41.667 0.00 0.00 0.00 1.85
2134 3213 4.485875 TCAACTACTCCCACTGTTCCTAA 58.514 43.478 0.00 0.00 0.00 2.69
2135 3214 4.087182 CTCAACTACTCCCACTGTTCCTA 58.913 47.826 0.00 0.00 0.00 2.94
2136 3215 2.900546 CTCAACTACTCCCACTGTTCCT 59.099 50.000 0.00 0.00 0.00 3.36
2137 3216 2.897969 TCTCAACTACTCCCACTGTTCC 59.102 50.000 0.00 0.00 0.00 3.62
2138 3217 3.056465 CCTCTCAACTACTCCCACTGTTC 60.056 52.174 0.00 0.00 0.00 3.18
2139 3218 2.900546 CCTCTCAACTACTCCCACTGTT 59.099 50.000 0.00 0.00 0.00 3.16
2140 3219 2.110188 TCCTCTCAACTACTCCCACTGT 59.890 50.000 0.00 0.00 0.00 3.55
2141 3220 2.808919 TCCTCTCAACTACTCCCACTG 58.191 52.381 0.00 0.00 0.00 3.66
2142 3221 3.544698 TTCCTCTCAACTACTCCCACT 57.455 47.619 0.00 0.00 0.00 4.00
2143 3222 4.618920 TTTTCCTCTCAACTACTCCCAC 57.381 45.455 0.00 0.00 0.00 4.61
2280 3369 1.352083 TTCCTCTGGACTTGGACAGG 58.648 55.000 0.00 0.00 35.47 4.00
2306 3395 3.871485 TGAAGCCACAACTTTGCAAAAT 58.129 36.364 13.84 0.00 0.00 1.82
2313 3402 4.887071 TCACATTACTGAAGCCACAACTTT 59.113 37.500 0.00 0.00 0.00 2.66
2319 3408 5.238583 AGTAACTCACATTACTGAAGCCAC 58.761 41.667 0.00 0.00 42.53 5.01
2401 3501 4.067944 ACAGAAAGAGACCCCAGAGTAT 57.932 45.455 0.00 0.00 0.00 2.12
2453 3553 1.916181 ACAGTACTGGAGGATTTGGGG 59.084 52.381 26.12 0.00 34.19 4.96
2457 3557 3.769844 ACGATCACAGTACTGGAGGATTT 59.230 43.478 26.12 13.27 34.19 2.17
2472 3572 7.463544 TGTGTTCATCAATTTATGACGATCAC 58.536 34.615 1.72 9.44 44.93 3.06
2477 3577 7.919690 ACCTATGTGTTCATCAATTTATGACG 58.080 34.615 1.72 0.00 41.93 4.35
2509 3609 4.819105 ACATGGTCCATAAAGTTCGAGA 57.181 40.909 3.38 0.00 0.00 4.04
2702 3802 0.109412 GAATGCACTGAACAGGCTGC 60.109 55.000 15.89 8.28 32.85 5.25
2718 3819 3.866816 TGAGAGATGGGCCATAGAGAAT 58.133 45.455 21.26 2.25 0.00 2.40
2752 3853 6.962182 TCCCATATGGTCATATCCTTGATTC 58.038 40.000 20.46 0.00 31.98 2.52
2817 3918 4.270008 CGGTGGGGATAAAGAGACAAATT 58.730 43.478 0.00 0.00 0.00 1.82
2836 3937 8.691661 ATGCTTATTCAAATAAACTATCCGGT 57.308 30.769 0.00 0.00 31.03 5.28
2943 4048 4.406456 TCAAATCAACCAGCATACCAAGT 58.594 39.130 0.00 0.00 0.00 3.16
3078 4281 9.965824 AAAGACAGTACAATTAATTTCACTTGG 57.034 29.630 0.00 0.00 0.00 3.61
3220 4423 5.123227 CCATATTAAGTGTCCGGTGAATGT 58.877 41.667 0.00 0.00 0.00 2.71
3294 4497 1.264288 ACACGCAAAAGCAGAACTAGC 59.736 47.619 0.00 0.00 0.00 3.42
3338 4542 4.797275 GCAAGCACTACAAAATGAAGGCTT 60.797 41.667 0.00 0.00 40.64 4.35
3339 4543 3.305608 GCAAGCACTACAAAATGAAGGCT 60.306 43.478 0.00 0.00 0.00 4.58
3375 4579 4.392047 TCCATGCTTCATCGCAATAGAAT 58.608 39.130 0.00 0.00 44.06 2.40
3385 4593 1.003116 GCACACGATCCATGCTTCATC 60.003 52.381 0.00 0.00 36.40 2.92
3387 4595 1.360931 CGCACACGATCCATGCTTCA 61.361 55.000 8.40 0.00 43.93 3.02
3426 4634 6.492429 GGTAGTGAAGATTTTGGGGTTACTTT 59.508 38.462 0.00 0.00 0.00 2.66
3429 4637 4.703575 GGGTAGTGAAGATTTTGGGGTTAC 59.296 45.833 0.00 0.00 0.00 2.50
3449 4657 8.946797 ATACGTAATGATTAACTACCTAGGGT 57.053 34.615 14.81 0.00 40.16 4.34
3555 4767 5.353123 ACGAACATGCGGTAAGATTAAATGT 59.647 36.000 0.00 0.00 35.12 2.71
3570 4782 2.293399 AGTTCCAGGAAAACGAACATGC 59.707 45.455 2.45 0.00 38.67 4.06
3574 4786 7.201617 CCATATCTAAGTTCCAGGAAAACGAAC 60.202 40.741 2.45 0.00 36.88 3.95
3798 5011 1.247567 ATGACGGGCCAAACTTTCAG 58.752 50.000 4.39 0.00 0.00 3.02
3837 5050 7.040132 ACAAAAGGAAAATTCTCTGGATCTGAC 60.040 37.037 0.00 0.00 0.00 3.51
3987 5200 9.581099 TTTTTCTCAGAAACCTGAAATACAAAC 57.419 29.630 0.00 0.00 39.92 2.93
4014 5227 1.763770 AGCACACCAGGCTTTAGCT 59.236 52.632 1.26 0.00 38.81 3.32
4023 5236 0.178992 TTCCCTTGGAAGCACACCAG 60.179 55.000 0.00 0.00 36.71 4.00
4119 5332 7.627298 ATCTTCTTCAGGTTCATTCTTGATG 57.373 36.000 0.00 0.00 37.08 3.07
4177 5390 7.606456 TCAAGTAAGAATTCTCCTTTTGCGTAT 59.394 33.333 8.78 0.00 0.00 3.06
4190 5403 9.937175 CCGAGGAAAATAATCAAGTAAGAATTC 57.063 33.333 0.00 0.00 0.00 2.17
4198 5411 5.045869 TCCACTCCGAGGAAAATAATCAAGT 60.046 40.000 0.00 0.00 30.71 3.16
4201 5414 5.023533 CTCCACTCCGAGGAAAATAATCA 57.976 43.478 0.00 0.00 34.08 2.57
4219 5432 2.297701 GCTATTTCGAAATGCCCTCCA 58.702 47.619 29.20 9.88 0.00 3.86
4295 5511 7.337184 TGTCGATTGTATCAGGGAGATATCTAC 59.663 40.741 6.38 6.38 41.10 2.59
4356 5572 5.592104 TCCGTATCTTCTAGCATTCACAA 57.408 39.130 0.00 0.00 0.00 3.33
4506 5743 7.489757 ACGCTCATAGAAAGAATCAGAACTTAC 59.510 37.037 0.00 0.00 0.00 2.34
4510 5747 6.654793 AACGCTCATAGAAAGAATCAGAAC 57.345 37.500 0.00 0.00 0.00 3.01
4523 5760 8.069574 CAGCTCTATATCATCTAACGCTCATAG 58.930 40.741 0.00 0.00 0.00 2.23
4539 5776 8.986929 AACTAAAAAGAATGCCAGCTCTATAT 57.013 30.769 0.00 0.00 0.00 0.86
4547 5784 5.461737 TCGCAAAAACTAAAAAGAATGCCAG 59.538 36.000 0.00 0.00 0.00 4.85
4640 5879 0.759959 TGTTGGGCCGTTCTTCTGTA 59.240 50.000 0.00 0.00 0.00 2.74
4658 5897 4.459337 GGTTAGAACAGGAAACCAGGAATG 59.541 45.833 0.00 0.00 41.89 2.67
4666 5905 6.868339 CCATCAAAATGGTTAGAACAGGAAAC 59.132 38.462 0.00 0.00 46.43 2.78
4710 5949 9.014297 GGATGGGTAAAAGAAGAACCATATATG 57.986 37.037 5.68 5.68 38.72 1.78
4711 5950 8.960064 AGGATGGGTAAAAGAAGAACCATATAT 58.040 33.333 0.00 0.00 38.72 0.86
4722 5961 8.547481 AGAAAAGAAAAGGATGGGTAAAAGAA 57.453 30.769 0.00 0.00 0.00 2.52
4736 5975 8.409358 TGGAAGAAGGGAATAGAAAAGAAAAG 57.591 34.615 0.00 0.00 0.00 2.27
4742 5982 6.152638 ACCATGGAAGAAGGGAATAGAAAA 57.847 37.500 21.47 0.00 0.00 2.29
4779 6019 3.531538 TGAAAATCGTAGTGGCTGATCC 58.468 45.455 0.00 0.00 0.00 3.36
4818 6058 3.120234 TCACATCATTGCAGCAAACTACG 60.120 43.478 12.97 2.77 0.00 3.51
4821 6061 2.624364 TGTCACATCATTGCAGCAAACT 59.376 40.909 12.97 0.00 0.00 2.66
4926 6172 1.802960 AGCACTCATTGAAAGTGAGCG 59.197 47.619 9.54 0.00 45.64 5.03
4956 6202 5.389935 GGAGATGTCGACAACAGAAATCAAC 60.390 44.000 24.13 11.06 42.37 3.18
5040 6318 4.865761 GCACATGCATGGCGCTGG 62.866 66.667 29.41 12.71 43.06 4.85
5059 6337 3.701241 TGAGTTGGTCGTTTTGCATTTC 58.299 40.909 0.00 0.00 0.00 2.17
5084 6364 1.825474 TGCTGCTCTGTAGTAGGGAAC 59.175 52.381 0.00 0.00 36.08 3.62
5087 6367 1.550524 TGTTGCTGCTCTGTAGTAGGG 59.449 52.381 0.00 0.00 36.08 3.53
5109 6389 3.388024 ACCACACGCAATATAGACCAGAT 59.612 43.478 0.00 0.00 0.00 2.90
5110 6390 2.764010 ACCACACGCAATATAGACCAGA 59.236 45.455 0.00 0.00 0.00 3.86
5128 6408 4.098960 ACTTTCAGAAGTTGACGAGTACCA 59.901 41.667 0.00 0.00 43.48 3.25
5132 6412 3.181489 ACGACTTTCAGAAGTTGACGAGT 60.181 43.478 12.25 0.00 46.15 4.18
5138 6418 3.194861 TGACCACGACTTTCAGAAGTTG 58.805 45.455 5.25 5.25 45.88 3.16
5202 6482 1.001706 TCTAATTCTGATCGACGCGGG 60.002 52.381 12.47 1.12 0.00 6.13
5207 6487 2.789893 GTGGCGTCTAATTCTGATCGAC 59.210 50.000 0.00 0.00 0.00 4.20
5223 6503 0.594796 GCAACTTTTGGTGAGTGGCG 60.595 55.000 0.00 0.00 40.19 5.69
5250 6530 8.565416 GCATTTCAAAGGTGTAGTTTACTTAGT 58.435 33.333 0.00 0.00 0.00 2.24
5254 6534 6.952773 TGCATTTCAAAGGTGTAGTTTACT 57.047 33.333 0.00 0.00 0.00 2.24
5255 6535 7.328493 GGAATGCATTTCAAAGGTGTAGTTTAC 59.672 37.037 14.33 0.00 35.94 2.01
5257 6537 6.183360 TGGAATGCATTTCAAAGGTGTAGTTT 60.183 34.615 18.35 0.00 35.94 2.66
5258 6538 5.304101 TGGAATGCATTTCAAAGGTGTAGTT 59.696 36.000 18.35 0.00 35.94 2.24
5259 6539 4.832266 TGGAATGCATTTCAAAGGTGTAGT 59.168 37.500 18.35 0.00 35.94 2.73
5267 6547 5.287674 TCCAGTTTGGAATGCATTTCAAA 57.712 34.783 32.80 32.80 45.00 2.69
5291 6571 4.258543 ACTTCTGAAACTCAACGAAACCA 58.741 39.130 0.00 0.00 0.00 3.67
5297 6577 4.686554 CCTCCTAACTTCTGAAACTCAACG 59.313 45.833 0.00 0.00 0.00 4.10
5301 6581 3.055021 CCCCCTCCTAACTTCTGAAACTC 60.055 52.174 0.00 0.00 0.00 3.01
5329 6610 0.178301 GCTACTGCAACCTCCTACCC 59.822 60.000 0.00 0.00 39.41 3.69
5330 6611 3.762674 GCTACTGCAACCTCCTACC 57.237 57.895 0.00 0.00 39.41 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.