Multiple sequence alignment - TraesCS3B01G178800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G178800 chr3B 100.000 3065 0 0 1 3065 183541629 183544693 0.000000e+00 5661
1 TraesCS3B01G178800 chr3B 81.333 375 66 4 43 415 732847637 732847265 4.970000e-78 302
2 TraesCS3B01G178800 chr3B 76.359 368 73 11 57 418 821235669 821235310 5.220000e-43 185
3 TraesCS3B01G178800 chr3B 75.890 365 73 10 62 419 778677165 778676809 4.060000e-39 172
4 TraesCS3B01G178800 chr3A 90.349 2611 152 41 23 2557 141909126 141911712 0.000000e+00 3334
5 TraesCS3B01G178800 chr3A 78.214 280 51 9 142 415 597083195 597083470 1.460000e-38 171
6 TraesCS3B01G178800 chr3A 92.683 82 6 0 2571 2652 141911695 141911776 5.370000e-23 119
7 TraesCS3B01G178800 chr3A 77.143 210 38 8 220 420 704367898 704367690 2.500000e-21 113
8 TraesCS3B01G178800 chr3D 95.127 1929 61 12 641 2557 129396836 129398743 0.000000e+00 3011
9 TraesCS3B01G178800 chr3D 76.923 364 73 8 62 420 582537251 582537608 2.410000e-46 196
10 TraesCS3B01G178800 chr3D 96.341 82 3 0 2571 2652 129398726 129398807 5.330000e-28 135
11 TraesCS3B01G178800 chr3D 89.796 98 7 3 2809 2906 129398806 129398900 4.150000e-24 122
12 TraesCS3B01G178800 chr6A 82.114 369 57 7 57 420 57511368 57511004 1.070000e-79 307
13 TraesCS3B01G178800 chr1A 78.492 358 62 9 62 418 531990544 531990201 1.430000e-53 220
14 TraesCS3B01G178800 chrUn 76.791 349 65 10 77 418 51210671 51210332 6.750000e-42 182
15 TraesCS3B01G178800 chr5D 75.538 372 69 18 57 415 430155986 430155624 2.450000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G178800 chr3B 183541629 183544693 3064 False 5661.000000 5661 100.000000 1 3065 1 chr3B.!!$F1 3064
1 TraesCS3B01G178800 chr3A 141909126 141911776 2650 False 1726.500000 3334 91.516000 23 2652 2 chr3A.!!$F2 2629
2 TraesCS3B01G178800 chr3D 129396836 129398900 2064 False 1089.333333 3011 93.754667 641 2906 3 chr3D.!!$F2 2265

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 475 0.108138 GTCTACGCATGACTTGGCCT 60.108 55.0 3.32 0.0 0.0 5.19 F
450 476 0.613260 TCTACGCATGACTTGGCCTT 59.387 50.0 3.32 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2102 0.761802 GGAGGATGACCCAGATGTCC 59.238 60.000 0.00 0.0 37.41 4.02 R
2324 2404 1.945394 CTCTGGCCAAATCTGAATCCG 59.055 52.381 7.01 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.663695 TTATAAAGTCAGGCGGCTGC 58.336 50.000 32.43 25.68 41.71 5.25
37 38 1.676014 GCGGCTGCCTTCTCTCTAAAA 60.676 52.381 17.92 0.00 33.98 1.52
38 39 2.003301 CGGCTGCCTTCTCTCTAAAAC 58.997 52.381 17.92 0.00 0.00 2.43
47 48 5.368989 CCTTCTCTCTAAAACAACAGTGGT 58.631 41.667 0.00 0.00 0.00 4.16
49 50 4.703897 TCTCTCTAAAACAACAGTGGTGG 58.296 43.478 13.89 0.00 0.00 4.61
59 60 2.124570 AGTGGTGGCGGATGCATC 60.125 61.111 18.81 18.81 45.35 3.91
60 61 2.438254 GTGGTGGCGGATGCATCA 60.438 61.111 27.25 5.32 45.35 3.07
71 72 2.804212 CGGATGCATCACATGTAGCAGA 60.804 50.000 27.25 6.09 39.84 4.26
79 80 0.385751 ACATGTAGCAGACGGGATCG 59.614 55.000 0.00 0.00 43.02 3.69
133 134 2.148916 TGTTGGTGTTGCTACTCGAG 57.851 50.000 11.84 11.84 0.00 4.04
148 149 2.043852 GAGCCCCTGGTCTCGAGA 60.044 66.667 12.08 12.08 36.07 4.04
151 152 1.456705 GCCCCTGGTCTCGAGATCT 60.457 63.158 25.40 0.00 0.00 2.75
197 198 3.187227 CGAGTGGTTATATCTGGCAATGC 59.813 47.826 0.00 0.00 0.00 3.56
213 214 6.611380 GGCAATGCCGATATTATTTTTACG 57.389 37.500 9.14 0.00 39.62 3.18
214 215 6.146898 GGCAATGCCGATATTATTTTTACGT 58.853 36.000 9.14 0.00 39.62 3.57
216 217 7.358023 GGCAATGCCGATATTATTTTTACGTTG 60.358 37.037 9.14 0.00 39.62 4.10
217 218 7.166804 GCAATGCCGATATTATTTTTACGTTGT 59.833 33.333 0.00 0.00 0.00 3.32
218 219 8.468349 CAATGCCGATATTATTTTTACGTTGTG 58.532 33.333 0.00 0.00 0.00 3.33
219 220 5.966503 TGCCGATATTATTTTTACGTTGTGC 59.033 36.000 0.00 0.00 0.00 4.57
239 242 3.374988 TGCCTTATTGAAGACATTGCTCG 59.625 43.478 0.00 0.00 34.25 5.03
240 243 3.375299 GCCTTATTGAAGACATTGCTCGT 59.625 43.478 0.00 0.00 34.25 4.18
249 252 6.371389 TGAAGACATTGCTCGTATATACTCG 58.629 40.000 11.05 3.12 0.00 4.18
250 253 5.298197 AGACATTGCTCGTATATACTCGG 57.702 43.478 11.05 2.55 0.00 4.63
252 255 5.648526 AGACATTGCTCGTATATACTCGGAT 59.351 40.000 11.05 0.00 0.00 4.18
253 256 5.881447 ACATTGCTCGTATATACTCGGATC 58.119 41.667 11.05 0.00 0.00 3.36
255 258 2.934553 TGCTCGTATATACTCGGATCGG 59.065 50.000 11.05 0.00 0.00 4.18
256 259 2.935201 GCTCGTATATACTCGGATCGGT 59.065 50.000 11.05 0.00 0.00 4.69
294 297 3.578282 CCTAGATTTTGGCCTTGTGGTTT 59.422 43.478 3.32 0.00 35.27 3.27
302 305 1.883021 CCTTGTGGTTTGATCCGGC 59.117 57.895 0.00 0.00 0.00 6.13
303 306 1.501741 CTTGTGGTTTGATCCGGCG 59.498 57.895 0.00 0.00 0.00 6.46
307 310 1.451207 TGGTTTGATCCGGCGATGG 60.451 57.895 9.30 0.00 0.00 3.51
332 335 0.322456 CTTCAATGTCGCCCCCTTCA 60.322 55.000 0.00 0.00 0.00 3.02
333 336 0.331278 TTCAATGTCGCCCCCTTCAT 59.669 50.000 0.00 0.00 0.00 2.57
334 337 0.394216 TCAATGTCGCCCCCTTCATG 60.394 55.000 0.00 0.00 0.00 3.07
336 339 0.331278 AATGTCGCCCCCTTCATGAA 59.669 50.000 8.12 8.12 0.00 2.57
352 355 4.873817 TCATGAAGGCATTGTTGTTGAAG 58.126 39.130 0.00 0.00 30.68 3.02
360 363 3.245990 GCATTGTTGTTGAAGAACCTTGC 59.754 43.478 11.59 11.59 0.00 4.01
369 372 1.244019 AAGAACCTTGCCGTCCATGC 61.244 55.000 0.00 0.00 0.00 4.06
390 393 2.086869 GGTGTCATGAGATGGTTGGTG 58.913 52.381 0.00 0.00 0.00 4.17
393 396 1.281867 GTCATGAGATGGTTGGTGGGA 59.718 52.381 0.00 0.00 0.00 4.37
397 400 4.416513 TCATGAGATGGTTGGTGGGATATT 59.583 41.667 0.00 0.00 0.00 1.28
420 423 7.812309 TTGTCATTACTCTAGTTTGTCGATG 57.188 36.000 0.00 0.00 0.00 3.84
439 465 1.067142 TGCTTTTCCTCGTCTACGCAT 60.067 47.619 0.00 0.00 39.60 4.73
445 471 1.132453 TCCTCGTCTACGCATGACTTG 59.868 52.381 0.00 0.00 39.60 3.16
447 473 0.457853 TCGTCTACGCATGACTTGGC 60.458 55.000 0.00 0.00 39.60 4.52
448 474 1.421410 CGTCTACGCATGACTTGGCC 61.421 60.000 0.00 0.00 32.70 5.36
449 475 0.108138 GTCTACGCATGACTTGGCCT 60.108 55.000 3.32 0.00 0.00 5.19
450 476 0.613260 TCTACGCATGACTTGGCCTT 59.387 50.000 3.32 0.00 0.00 4.35
451 477 0.729116 CTACGCATGACTTGGCCTTG 59.271 55.000 3.32 0.00 0.00 3.61
454 481 1.340017 ACGCATGACTTGGCCTTGTAT 60.340 47.619 3.32 0.00 0.00 2.29
456 483 2.094675 GCATGACTTGGCCTTGTATGT 58.905 47.619 3.32 0.00 0.00 2.29
461 488 4.072131 TGACTTGGCCTTGTATGTCTTTC 58.928 43.478 3.32 0.00 0.00 2.62
464 491 4.288626 ACTTGGCCTTGTATGTCTTTCCTA 59.711 41.667 3.32 0.00 0.00 2.94
471 498 3.857052 TGTATGTCTTTCCTAGTTGCCG 58.143 45.455 0.00 0.00 0.00 5.69
481 508 1.193874 CCTAGTTGCCGACGTGTTTTC 59.806 52.381 0.00 0.00 0.00 2.29
483 510 1.085501 AGTTGCCGACGTGTTTTCGT 61.086 50.000 0.00 0.00 46.88 3.85
493 534 4.430703 CGACGTGTTTTCGTGTGTAGTATG 60.431 45.833 0.00 0.00 44.21 2.39
494 535 3.182972 ACGTGTTTTCGTGTGTAGTATGC 59.817 43.478 0.00 0.00 42.56 3.14
496 537 4.663140 CGTGTTTTCGTGTGTAGTATGCAG 60.663 45.833 0.00 0.00 0.00 4.41
498 539 4.684242 TGTTTTCGTGTGTAGTATGCAGAG 59.316 41.667 0.00 0.00 0.00 3.35
501 542 2.823747 TCGTGTGTAGTATGCAGAGGTT 59.176 45.455 0.00 0.00 32.15 3.50
505 546 3.056107 TGTGTAGTATGCAGAGGTTGGAC 60.056 47.826 0.00 0.00 0.00 4.02
508 549 1.066858 AGTATGCAGAGGTTGGACGTG 60.067 52.381 0.00 0.00 0.00 4.49
521 562 2.616960 TGGACGTGTGCTCATTGTATC 58.383 47.619 0.00 0.00 0.00 2.24
530 578 6.476706 CGTGTGCTCATTGTATCTTCTTGATA 59.523 38.462 0.00 0.00 36.65 2.15
546 594 8.740906 TCTTCTTGATACTTCGTTTGAGTCTAT 58.259 33.333 0.00 0.00 0.00 1.98
557 605 9.959775 CTTCGTTTGAGTCTATAAAATTCACTC 57.040 33.333 0.00 0.00 35.11 3.51
591 639 1.001633 ACAGGCCAGTAATTCGTTCGT 59.998 47.619 5.01 0.00 0.00 3.85
592 640 2.073816 CAGGCCAGTAATTCGTTCGTT 58.926 47.619 5.01 0.00 0.00 3.85
602 650 1.700523 TTCGTTCGTTCCACCGTATG 58.299 50.000 0.00 0.00 0.00 2.39
626 674 5.585445 GTCATATCTGGAATGCTGGATGATC 59.415 44.000 0.00 0.00 0.00 2.92
627 675 2.538512 TCTGGAATGCTGGATGATCG 57.461 50.000 0.00 0.00 0.00 3.69
636 684 1.270199 GCTGGATGATCGCTCAGTGAT 60.270 52.381 0.00 0.00 35.33 3.06
639 687 2.030805 TGGATGATCGCTCAGTGATACG 60.031 50.000 0.00 8.91 32.57 3.06
645 693 5.827666 TGATCGCTCAGTGATACGAAAATA 58.172 37.500 18.71 6.51 38.15 1.40
652 700 7.126398 GCTCAGTGATACGAAAATATGTTTCC 58.874 38.462 0.00 0.00 0.00 3.13
654 702 5.901884 CAGTGATACGAAAATATGTTTCCGC 59.098 40.000 0.00 0.00 0.00 5.54
659 707 3.088552 CGAAAATATGTTTCCGCGTCAC 58.911 45.455 4.92 0.00 0.00 3.67
669 717 1.876714 CCGCGTCACTCCATAACGG 60.877 63.158 4.92 0.00 36.92 4.44
821 873 1.031235 TCGTCACGTGACCCACTTTA 58.969 50.000 36.01 14.67 41.86 1.85
909 961 4.899239 CGGCTCCATCTCCCACGC 62.899 72.222 0.00 0.00 0.00 5.34
942 1001 3.612247 GATGGCTCGGCACCAGTGT 62.612 63.158 0.00 0.00 41.46 3.55
954 1013 1.352622 ACCAGTGTTCCCCTGCTTCA 61.353 55.000 0.00 0.00 0.00 3.02
1016 1075 3.754068 CATGGATCATGGTGGCGG 58.246 61.111 0.00 0.00 38.11 6.13
1017 1076 1.148949 CATGGATCATGGTGGCGGA 59.851 57.895 0.00 0.00 38.11 5.54
1018 1077 0.887836 CATGGATCATGGTGGCGGAG 60.888 60.000 0.00 0.00 38.11 4.63
1019 1078 2.060567 ATGGATCATGGTGGCGGAGG 62.061 60.000 0.00 0.00 0.00 4.30
1020 1079 2.746375 GGATCATGGTGGCGGAGGT 61.746 63.158 0.00 0.00 0.00 3.85
1021 1080 1.524621 GATCATGGTGGCGGAGGTG 60.525 63.158 0.00 0.00 0.00 4.00
1051 1110 3.461773 GGAGTAGCAGCCGCCTCA 61.462 66.667 6.06 0.00 39.83 3.86
1119 1178 1.138459 CTGCAACAACAACACCGCA 59.862 52.632 0.00 0.00 0.00 5.69
1332 1391 1.289066 CGAGTCCTTCTCCAACGCA 59.711 57.895 0.00 0.00 39.84 5.24
1398 1457 3.144193 CCTCCGGCTCGCTTCTCT 61.144 66.667 0.00 0.00 0.00 3.10
1449 1508 1.128188 AAAAGAGCCCTCTCCACGGT 61.128 55.000 0.00 0.00 39.39 4.83
1450 1509 1.545706 AAAGAGCCCTCTCCACGGTC 61.546 60.000 0.00 0.00 39.39 4.79
1451 1510 2.680352 GAGCCCTCTCCACGGTCA 60.680 66.667 0.00 0.00 33.19 4.02
1453 1512 2.187946 GCCCTCTCCACGGTCATG 59.812 66.667 0.00 0.00 0.00 3.07
1496 1558 4.760047 CCGGGTCAAGGGCGACAG 62.760 72.222 0.00 0.00 37.66 3.51
1694 1756 6.587273 AGTTCTACAGCAAGAAGAAGAAACT 58.413 36.000 0.00 0.00 36.19 2.66
1707 1769 9.892130 AAGAAGAAGAAACTAAAGAAGAAGTCA 57.108 29.630 0.00 0.00 0.00 3.41
1713 1775 3.654414 ACTAAAGAAGAAGTCACCTGCG 58.346 45.455 0.00 0.00 0.00 5.18
1923 1991 4.221422 CGGGCGTCGATGGTGGAT 62.221 66.667 6.79 0.00 42.43 3.41
1929 1997 1.935300 GCGTCGATGGTGGATATGGTC 60.935 57.143 6.79 0.00 0.00 4.02
2034 2102 1.045350 TCATCCTCCAGGCCTTCTCG 61.045 60.000 0.00 0.00 34.44 4.04
2047 2115 1.186200 CTTCTCGGACATCTGGGTCA 58.814 55.000 0.00 0.00 39.59 4.02
2115 2187 5.426833 ACTCACTCAGTTATTAATCCAGCCT 59.573 40.000 0.00 0.00 26.56 4.58
2127 2199 1.661463 TCCAGCCTCAGGATGTTTCT 58.339 50.000 8.49 0.00 37.40 2.52
2136 2208 6.013293 AGCCTCAGGATGTTTCTTTAACTACT 60.013 38.462 0.00 0.00 37.64 2.57
2139 2211 7.982354 CCTCAGGATGTTTCTTTAACTACTAGG 59.018 40.741 0.00 0.00 37.64 3.02
2164 2241 8.310382 GGACTATCATAAGTAATCATGCTCTGT 58.690 37.037 0.00 0.00 0.00 3.41
2205 2282 7.148423 CCAACGATGTTCATCAGTTTGATCTTA 60.148 37.037 12.34 0.00 34.28 2.10
2206 2283 7.905604 ACGATGTTCATCAGTTTGATCTTAA 57.094 32.000 12.34 0.00 34.28 1.85
2207 2284 8.498054 ACGATGTTCATCAGTTTGATCTTAAT 57.502 30.769 12.34 0.00 34.28 1.40
2208 2285 8.950210 ACGATGTTCATCAGTTTGATCTTAATT 58.050 29.630 12.34 0.00 34.28 1.40
2263 2343 5.360144 GGTTCTGCTGTAATGTACTCCTAGA 59.640 44.000 0.00 0.00 0.00 2.43
2324 2404 6.448207 AAAGCTAGCTTCTGATTTGGAATC 57.552 37.500 29.42 0.00 34.84 2.52
2535 2615 1.301244 GGATGCTCGCCATGTCGAT 60.301 57.895 0.00 0.00 37.87 3.59
2540 2620 2.351455 TGCTCGCCATGTCGATTTTAA 58.649 42.857 0.00 0.00 37.87 1.52
2541 2621 2.744741 TGCTCGCCATGTCGATTTTAAA 59.255 40.909 0.00 0.00 37.87 1.52
2542 2622 3.189495 TGCTCGCCATGTCGATTTTAAAA 59.811 39.130 0.00 2.51 37.87 1.52
2543 2623 4.162812 GCTCGCCATGTCGATTTTAAAAA 58.837 39.130 0.00 0.00 37.87 1.94
2544 2624 4.798387 GCTCGCCATGTCGATTTTAAAAAT 59.202 37.500 0.00 0.00 37.87 1.82
2545 2625 5.275881 GCTCGCCATGTCGATTTTAAAAATG 60.276 40.000 0.00 3.90 37.87 2.32
2546 2626 5.944013 TCGCCATGTCGATTTTAAAAATGA 58.056 33.333 4.44 3.22 33.02 2.57
2547 2627 6.382608 TCGCCATGTCGATTTTAAAAATGAA 58.617 32.000 4.44 0.00 33.02 2.57
2548 2628 6.306837 TCGCCATGTCGATTTTAAAAATGAAC 59.693 34.615 4.44 2.55 33.02 3.18
2549 2629 6.088749 CGCCATGTCGATTTTAAAAATGAACA 59.911 34.615 4.44 7.77 0.00 3.18
2550 2630 7.358765 CGCCATGTCGATTTTAAAAATGAACAA 60.359 33.333 4.44 0.00 0.00 2.83
2551 2631 8.279103 GCCATGTCGATTTTAAAAATGAACAAA 58.721 29.630 4.44 0.00 0.00 2.83
2611 2691 6.266786 TCATTCATCGGTGCCTAGTAGATTAA 59.733 38.462 0.00 0.00 0.00 1.40
2619 2699 6.315393 CGGTGCCTAGTAGATTAAATTTGTGT 59.685 38.462 0.00 0.00 0.00 3.72
2652 2732 7.094075 TGTGGAAGTACGTATCATGTAGACTTT 60.094 37.037 0.00 0.00 0.00 2.66
2653 2733 7.220300 GTGGAAGTACGTATCATGTAGACTTTG 59.780 40.741 0.00 0.00 0.00 2.77
2654 2734 6.696148 GGAAGTACGTATCATGTAGACTTTGG 59.304 42.308 0.00 0.00 0.00 3.28
2655 2735 5.589192 AGTACGTATCATGTAGACTTTGGC 58.411 41.667 0.00 0.00 0.00 4.52
2656 2736 3.793559 ACGTATCATGTAGACTTTGGCC 58.206 45.455 0.00 0.00 0.00 5.36
2657 2737 3.131396 CGTATCATGTAGACTTTGGCCC 58.869 50.000 0.00 0.00 0.00 5.80
2658 2738 2.736670 ATCATGTAGACTTTGGCCCC 57.263 50.000 0.00 0.00 0.00 5.80
2659 2739 0.251916 TCATGTAGACTTTGGCCCCG 59.748 55.000 0.00 0.00 0.00 5.73
2660 2740 1.077716 ATGTAGACTTTGGCCCCGC 60.078 57.895 0.00 0.00 0.00 6.13
2661 2741 1.562672 ATGTAGACTTTGGCCCCGCT 61.563 55.000 0.00 0.00 0.00 5.52
2662 2742 1.002502 GTAGACTTTGGCCCCGCTT 60.003 57.895 0.00 0.00 0.00 4.68
2663 2743 0.251073 GTAGACTTTGGCCCCGCTTA 59.749 55.000 0.00 0.00 0.00 3.09
2664 2744 0.539986 TAGACTTTGGCCCCGCTTAG 59.460 55.000 0.00 0.00 0.00 2.18
2665 2745 1.198759 AGACTTTGGCCCCGCTTAGA 61.199 55.000 0.00 0.00 0.00 2.10
2666 2746 0.107165 GACTTTGGCCCCGCTTAGAT 60.107 55.000 0.00 0.00 0.00 1.98
2667 2747 0.331616 ACTTTGGCCCCGCTTAGATT 59.668 50.000 0.00 0.00 0.00 2.40
2668 2748 0.740737 CTTTGGCCCCGCTTAGATTG 59.259 55.000 0.00 0.00 0.00 2.67
2669 2749 0.039035 TTTGGCCCCGCTTAGATTGT 59.961 50.000 0.00 0.00 0.00 2.71
2670 2750 0.393808 TTGGCCCCGCTTAGATTGTC 60.394 55.000 0.00 0.00 0.00 3.18
2671 2751 1.887707 GGCCCCGCTTAGATTGTCG 60.888 63.158 0.00 0.00 0.00 4.35
2672 2752 1.887707 GCCCCGCTTAGATTGTCGG 60.888 63.158 0.00 0.00 41.41 4.79
2673 2753 1.520666 CCCCGCTTAGATTGTCGGT 59.479 57.895 0.00 0.00 40.23 4.69
2674 2754 0.107848 CCCCGCTTAGATTGTCGGTT 60.108 55.000 0.00 0.00 40.23 4.44
2675 2755 1.677820 CCCCGCTTAGATTGTCGGTTT 60.678 52.381 0.00 0.00 40.23 3.27
2676 2756 1.396996 CCCGCTTAGATTGTCGGTTTG 59.603 52.381 0.00 0.00 40.23 2.93
2677 2757 1.202031 CCGCTTAGATTGTCGGTTTGC 60.202 52.381 0.00 0.00 37.33 3.68
2678 2758 1.732259 CGCTTAGATTGTCGGTTTGCT 59.268 47.619 0.00 0.00 0.00 3.91
2679 2759 2.222819 CGCTTAGATTGTCGGTTTGCTC 60.223 50.000 0.00 0.00 0.00 4.26
2680 2760 2.096013 GCTTAGATTGTCGGTTTGCTCC 59.904 50.000 0.00 0.00 0.00 4.70
2681 2761 3.600388 CTTAGATTGTCGGTTTGCTCCT 58.400 45.455 0.00 0.00 0.00 3.69
2682 2762 4.755411 CTTAGATTGTCGGTTTGCTCCTA 58.245 43.478 0.00 0.00 0.00 2.94
2683 2763 3.695830 AGATTGTCGGTTTGCTCCTAA 57.304 42.857 0.00 0.00 0.00 2.69
2684 2764 4.015872 AGATTGTCGGTTTGCTCCTAAA 57.984 40.909 0.00 0.00 0.00 1.85
2685 2765 4.589908 AGATTGTCGGTTTGCTCCTAAAT 58.410 39.130 0.00 0.00 0.00 1.40
2686 2766 5.741011 AGATTGTCGGTTTGCTCCTAAATA 58.259 37.500 0.00 0.00 0.00 1.40
2687 2767 6.177610 AGATTGTCGGTTTGCTCCTAAATAA 58.822 36.000 0.00 0.00 0.00 1.40
2688 2768 5.616488 TTGTCGGTTTGCTCCTAAATAAC 57.384 39.130 0.00 0.00 0.00 1.89
2689 2769 4.004982 TGTCGGTTTGCTCCTAAATAACC 58.995 43.478 0.00 0.00 35.91 2.85
2690 2770 3.376234 GTCGGTTTGCTCCTAAATAACCC 59.624 47.826 0.00 0.00 35.87 4.11
2691 2771 2.686405 CGGTTTGCTCCTAAATAACCCC 59.314 50.000 0.00 0.00 35.87 4.95
2692 2772 2.686405 GGTTTGCTCCTAAATAACCCCG 59.314 50.000 0.00 0.00 33.72 5.73
2693 2773 3.349927 GTTTGCTCCTAAATAACCCCGT 58.650 45.455 0.00 0.00 0.00 5.28
2694 2774 4.516323 GTTTGCTCCTAAATAACCCCGTA 58.484 43.478 0.00 0.00 0.00 4.02
2695 2775 5.128205 GTTTGCTCCTAAATAACCCCGTAT 58.872 41.667 0.00 0.00 0.00 3.06
2696 2776 5.376756 TTGCTCCTAAATAACCCCGTATT 57.623 39.130 0.00 0.00 0.00 1.89
2697 2777 4.964593 TGCTCCTAAATAACCCCGTATTC 58.035 43.478 0.00 0.00 0.00 1.75
2698 2778 4.409574 TGCTCCTAAATAACCCCGTATTCA 59.590 41.667 0.00 0.00 0.00 2.57
2699 2779 5.104444 TGCTCCTAAATAACCCCGTATTCAA 60.104 40.000 0.00 0.00 0.00 2.69
2700 2780 6.002082 GCTCCTAAATAACCCCGTATTCAAT 58.998 40.000 0.00 0.00 0.00 2.57
2701 2781 7.163441 GCTCCTAAATAACCCCGTATTCAATA 58.837 38.462 0.00 0.00 0.00 1.90
2702 2782 7.118825 GCTCCTAAATAACCCCGTATTCAATAC 59.881 40.741 0.00 0.00 0.00 1.89
2703 2783 8.032045 TCCTAAATAACCCCGTATTCAATACA 57.968 34.615 8.29 0.00 35.48 2.29
2704 2784 8.152246 TCCTAAATAACCCCGTATTCAATACAG 58.848 37.037 8.29 0.00 35.48 2.74
2705 2785 8.152246 CCTAAATAACCCCGTATTCAATACAGA 58.848 37.037 8.29 0.00 35.48 3.41
2706 2786 7.797038 AAATAACCCCGTATTCAATACAGAC 57.203 36.000 8.29 0.00 35.48 3.51
2707 2787 3.832615 ACCCCGTATTCAATACAGACC 57.167 47.619 8.29 0.00 35.48 3.85
2708 2788 3.381335 ACCCCGTATTCAATACAGACCT 58.619 45.455 8.29 0.00 35.48 3.85
2709 2789 3.387050 ACCCCGTATTCAATACAGACCTC 59.613 47.826 8.29 0.00 35.48 3.85
2710 2790 3.244112 CCCCGTATTCAATACAGACCTCC 60.244 52.174 8.29 0.00 35.48 4.30
2711 2791 3.552273 CCCGTATTCAATACAGACCTCCG 60.552 52.174 8.29 0.00 35.48 4.63
2712 2792 3.552273 CCGTATTCAATACAGACCTCCGG 60.552 52.174 8.29 0.00 35.48 5.14
2713 2793 2.622064 ATTCAATACAGACCTCCGGC 57.378 50.000 0.00 0.00 0.00 6.13
2714 2794 0.539986 TTCAATACAGACCTCCGGCC 59.460 55.000 0.00 0.00 0.00 6.13
2715 2795 0.616395 TCAATACAGACCTCCGGCCA 60.616 55.000 2.24 0.00 0.00 5.36
2716 2796 0.469917 CAATACAGACCTCCGGCCAT 59.530 55.000 2.24 0.00 0.00 4.40
2717 2797 0.759346 AATACAGACCTCCGGCCATC 59.241 55.000 2.24 0.00 0.00 3.51
2718 2798 1.464376 ATACAGACCTCCGGCCATCG 61.464 60.000 2.24 0.00 38.88 3.84
2719 2799 2.849096 TACAGACCTCCGGCCATCGT 62.849 60.000 2.24 0.00 37.11 3.73
2720 2800 2.683933 AGACCTCCGGCCATCGTT 60.684 61.111 2.24 0.00 37.11 3.85
2721 2801 2.267961 GACCTCCGGCCATCGTTT 59.732 61.111 2.24 0.00 37.11 3.60
2722 2802 1.376812 GACCTCCGGCCATCGTTTT 60.377 57.895 2.24 0.00 37.11 2.43
2723 2803 1.366854 GACCTCCGGCCATCGTTTTC 61.367 60.000 2.24 0.00 37.11 2.29
2724 2804 1.376683 CCTCCGGCCATCGTTTTCA 60.377 57.895 2.24 0.00 37.11 2.69
2725 2805 0.748005 CCTCCGGCCATCGTTTTCAT 60.748 55.000 2.24 0.00 37.11 2.57
2726 2806 1.094785 CTCCGGCCATCGTTTTCATT 58.905 50.000 2.24 0.00 37.11 2.57
2727 2807 1.064060 CTCCGGCCATCGTTTTCATTC 59.936 52.381 2.24 0.00 37.11 2.67
2728 2808 0.100503 CCGGCCATCGTTTTCATTCC 59.899 55.000 2.24 0.00 37.11 3.01
2729 2809 0.808125 CGGCCATCGTTTTCATTCCA 59.192 50.000 2.24 0.00 0.00 3.53
2730 2810 1.405105 CGGCCATCGTTTTCATTCCAT 59.595 47.619 2.24 0.00 0.00 3.41
2731 2811 2.616376 CGGCCATCGTTTTCATTCCATA 59.384 45.455 2.24 0.00 0.00 2.74
2732 2812 3.548014 CGGCCATCGTTTTCATTCCATAC 60.548 47.826 2.24 0.00 0.00 2.39
2733 2813 3.548014 GGCCATCGTTTTCATTCCATACG 60.548 47.826 0.00 0.00 0.00 3.06
2734 2814 3.548014 GCCATCGTTTTCATTCCATACGG 60.548 47.826 0.00 0.00 33.37 4.02
2735 2815 3.874543 CCATCGTTTTCATTCCATACGGA 59.125 43.478 0.00 0.00 40.60 4.69
2742 2822 4.602159 TTCCATACGGAACACGGC 57.398 55.556 0.00 0.00 46.79 5.68
2743 2823 1.446445 TTCCATACGGAACACGGCG 60.446 57.895 4.80 4.80 46.79 6.46
2744 2824 2.839043 TTCCATACGGAACACGGCGG 62.839 60.000 13.24 2.35 46.79 6.13
2757 2837 3.198187 CGGCGGCCGTTAATATACA 57.802 52.632 32.14 0.00 42.73 2.29
2758 2838 0.785979 CGGCGGCCGTTAATATACAC 59.214 55.000 32.14 5.15 42.73 2.90
2759 2839 1.868469 GGCGGCCGTTAATATACACA 58.132 50.000 28.70 0.00 0.00 3.72
2760 2840 2.419667 GGCGGCCGTTAATATACACAT 58.580 47.619 28.70 0.00 0.00 3.21
2761 2841 2.158841 GGCGGCCGTTAATATACACATG 59.841 50.000 28.70 0.00 0.00 3.21
2762 2842 2.803956 GCGGCCGTTAATATACACATGT 59.196 45.455 28.70 0.00 0.00 3.21
2763 2843 3.989167 GCGGCCGTTAATATACACATGTA 59.011 43.478 28.70 0.00 34.67 2.29
2764 2844 4.090930 GCGGCCGTTAATATACACATGTAG 59.909 45.833 28.70 0.00 33.52 2.74
2765 2845 5.463286 CGGCCGTTAATATACACATGTAGA 58.537 41.667 19.50 0.00 33.52 2.59
2766 2846 6.097356 CGGCCGTTAATATACACATGTAGAT 58.903 40.000 19.50 0.00 34.27 1.98
2767 2847 6.588756 CGGCCGTTAATATACACATGTAGATT 59.411 38.462 19.50 14.44 42.78 2.40
2768 2848 7.756272 CGGCCGTTAATATACACATGTAGATTA 59.244 37.037 19.50 12.79 41.18 1.75
2769 2849 9.426837 GGCCGTTAATATACACATGTAGATTAA 57.573 33.333 20.22 20.22 45.06 1.40
2795 2875 9.920946 AATCCAGATGTATAAAATTACACCTGT 57.079 29.630 5.50 0.00 40.67 4.00
2796 2876 9.920946 ATCCAGATGTATAAAATTACACCTGTT 57.079 29.630 5.50 0.00 40.67 3.16
2797 2877 9.391006 TCCAGATGTATAAAATTACACCTGTTC 57.609 33.333 5.50 0.00 40.67 3.18
2798 2878 8.621286 CCAGATGTATAAAATTACACCTGTTCC 58.379 37.037 5.50 0.00 40.67 3.62
2799 2879 9.173021 CAGATGTATAAAATTACACCTGTTCCA 57.827 33.333 0.00 0.00 38.44 3.53
2800 2880 9.747898 AGATGTATAAAATTACACCTGTTCCAA 57.252 29.630 0.00 0.00 35.04 3.53
2802 2882 7.822658 TGTATAAAATTACACCTGTTCCAAGC 58.177 34.615 0.00 0.00 0.00 4.01
2803 2883 4.600692 AAAATTACACCTGTTCCAAGCC 57.399 40.909 0.00 0.00 0.00 4.35
2804 2884 1.821216 ATTACACCTGTTCCAAGCCG 58.179 50.000 0.00 0.00 0.00 5.52
2805 2885 0.250553 TTACACCTGTTCCAAGCCGG 60.251 55.000 0.00 0.00 0.00 6.13
2806 2886 2.119484 TACACCTGTTCCAAGCCGGG 62.119 60.000 2.18 0.00 34.36 5.73
2807 2887 3.175710 ACCTGTTCCAAGCCGGGT 61.176 61.111 0.00 0.00 35.46 5.28
2808 2888 2.115266 CCTGTTCCAAGCCGGGTT 59.885 61.111 14.44 14.44 34.36 4.11
2809 2889 1.530655 CCTGTTCCAAGCCGGGTTT 60.531 57.895 18.04 0.00 34.36 3.27
2820 2900 2.668625 AGCCGGGTTTAACCTTTTTGA 58.331 42.857 14.27 0.00 38.64 2.69
2827 2907 7.435305 CCGGGTTTAACCTTTTTGAAAGAATA 58.565 34.615 14.27 0.00 38.64 1.75
2865 2945 9.202273 GGTTAAACAATGAATAACATCTTGCAA 57.798 29.630 0.00 0.00 38.38 4.08
2907 2987 9.719355 ACAATGTGTATTGACATAAGAAGTACA 57.281 29.630 6.98 0.00 45.21 2.90
2929 3009 9.315525 GTACATAATTCCTCTAAGTCTTTGACC 57.684 37.037 0.00 0.00 32.18 4.02
2930 3010 8.152023 ACATAATTCCTCTAAGTCTTTGACCT 57.848 34.615 0.00 0.00 32.18 3.85
2931 3011 8.606830 ACATAATTCCTCTAAGTCTTTGACCTT 58.393 33.333 0.00 0.00 32.18 3.50
2932 3012 8.887717 CATAATTCCTCTAAGTCTTTGACCTTG 58.112 37.037 0.00 0.00 32.18 3.61
2933 3013 4.891992 TCCTCTAAGTCTTTGACCTTGG 57.108 45.455 0.00 0.00 32.18 3.61
2934 3014 3.583086 TCCTCTAAGTCTTTGACCTTGGG 59.417 47.826 0.00 0.00 32.18 4.12
2935 3015 3.339141 CTCTAAGTCTTTGACCTTGGGC 58.661 50.000 0.00 0.00 32.18 5.36
2936 3016 2.039879 TCTAAGTCTTTGACCTTGGGCC 59.960 50.000 0.00 0.00 32.18 5.80
2937 3017 0.537371 AAGTCTTTGACCTTGGGCCG 60.537 55.000 0.00 0.00 32.18 6.13
2938 3018 1.072505 GTCTTTGACCTTGGGCCGA 59.927 57.895 0.00 0.00 0.00 5.54
2939 3019 0.536460 GTCTTTGACCTTGGGCCGAA 60.536 55.000 0.00 0.00 0.00 4.30
2940 3020 0.183971 TCTTTGACCTTGGGCCGAAA 59.816 50.000 0.54 0.00 0.00 3.46
2941 3021 1.036707 CTTTGACCTTGGGCCGAAAA 58.963 50.000 0.54 0.00 0.00 2.29
2942 3022 1.618343 CTTTGACCTTGGGCCGAAAAT 59.382 47.619 0.54 0.00 0.00 1.82
2943 3023 1.253100 TTGACCTTGGGCCGAAAATC 58.747 50.000 0.54 2.78 0.00 2.17
2944 3024 0.610785 TGACCTTGGGCCGAAAATCC 60.611 55.000 0.54 0.00 0.00 3.01
2945 3025 0.610785 GACCTTGGGCCGAAAATCCA 60.611 55.000 0.54 0.00 0.00 3.41
2946 3026 0.041090 ACCTTGGGCCGAAAATCCAT 59.959 50.000 0.54 0.00 0.00 3.41
2947 3027 1.194218 CCTTGGGCCGAAAATCCATT 58.806 50.000 0.54 0.00 0.00 3.16
2948 3028 1.554617 CCTTGGGCCGAAAATCCATTT 59.445 47.619 0.54 0.00 0.00 2.32
2949 3029 2.027285 CCTTGGGCCGAAAATCCATTTT 60.027 45.455 0.54 0.00 42.24 1.82
2950 3030 3.558958 CCTTGGGCCGAAAATCCATTTTT 60.559 43.478 0.54 0.00 39.86 1.94
2951 3031 4.323104 CCTTGGGCCGAAAATCCATTTTTA 60.323 41.667 0.54 0.00 39.86 1.52
2952 3032 5.427378 CTTGGGCCGAAAATCCATTTTTAT 58.573 37.500 0.54 0.00 39.86 1.40
2953 3033 6.407525 CCTTGGGCCGAAAATCCATTTTTATA 60.408 38.462 0.54 0.00 39.86 0.98
2954 3034 5.908341 TGGGCCGAAAATCCATTTTTATAC 58.092 37.500 0.00 0.00 39.86 1.47
2955 3035 5.163395 TGGGCCGAAAATCCATTTTTATACC 60.163 40.000 0.00 2.08 39.86 2.73
2956 3036 5.294356 GGCCGAAAATCCATTTTTATACCC 58.706 41.667 0.00 0.00 39.86 3.69
2957 3037 4.979815 GCCGAAAATCCATTTTTATACCCG 59.020 41.667 0.00 0.00 39.86 5.28
2958 3038 5.221087 GCCGAAAATCCATTTTTATACCCGA 60.221 40.000 0.00 0.00 39.86 5.14
2959 3039 6.435428 CCGAAAATCCATTTTTATACCCGAG 58.565 40.000 0.00 0.00 39.86 4.63
2960 3040 5.912955 CGAAAATCCATTTTTATACCCGAGC 59.087 40.000 0.00 0.00 39.86 5.03
2961 3041 6.238648 CGAAAATCCATTTTTATACCCGAGCT 60.239 38.462 0.00 0.00 39.86 4.09
2962 3042 6.635030 AAATCCATTTTTATACCCGAGCTC 57.365 37.500 2.73 2.73 0.00 4.09
2963 3043 5.568620 ATCCATTTTTATACCCGAGCTCT 57.431 39.130 12.85 0.00 0.00 4.09
2964 3044 4.957296 TCCATTTTTATACCCGAGCTCTC 58.043 43.478 12.85 0.00 0.00 3.20
2965 3045 4.654262 TCCATTTTTATACCCGAGCTCTCT 59.346 41.667 12.85 0.00 0.00 3.10
2966 3046 4.991687 CCATTTTTATACCCGAGCTCTCTC 59.008 45.833 12.85 0.00 35.99 3.20
2967 3047 4.667519 TTTTTATACCCGAGCTCTCTCC 57.332 45.455 12.85 0.00 35.94 3.71
2968 3048 3.596940 TTTATACCCGAGCTCTCTCCT 57.403 47.619 12.85 0.00 35.94 3.69
2969 3049 2.863132 TATACCCGAGCTCTCTCCTC 57.137 55.000 12.85 0.00 35.94 3.71
2970 3050 1.145571 ATACCCGAGCTCTCTCCTCT 58.854 55.000 12.85 0.00 35.94 3.69
2971 3051 0.470766 TACCCGAGCTCTCTCCTCTC 59.529 60.000 12.85 0.00 35.94 3.20
2972 3052 1.891919 CCCGAGCTCTCTCCTCTCG 60.892 68.421 12.85 4.13 46.44 4.04
2976 3056 2.254546 GAGCTCTCTCCTCTCGATGA 57.745 55.000 6.43 0.00 33.19 2.92
2977 3057 2.146342 GAGCTCTCTCCTCTCGATGAG 58.854 57.143 6.43 5.27 42.30 2.90
2978 3058 1.490490 AGCTCTCTCCTCTCGATGAGT 59.510 52.381 9.90 0.00 41.11 3.41
2979 3059 2.703536 AGCTCTCTCCTCTCGATGAGTA 59.296 50.000 9.90 0.00 41.11 2.59
2980 3060 3.067106 GCTCTCTCCTCTCGATGAGTAG 58.933 54.545 9.90 5.15 41.11 2.57
2981 3061 3.494398 GCTCTCTCCTCTCGATGAGTAGT 60.494 52.174 9.90 0.00 41.11 2.73
2982 3062 4.262292 GCTCTCTCCTCTCGATGAGTAGTA 60.262 50.000 9.90 0.00 41.11 1.82
2983 3063 5.740803 GCTCTCTCCTCTCGATGAGTAGTAA 60.741 48.000 9.90 0.00 41.11 2.24
2984 3064 6.236558 TCTCTCCTCTCGATGAGTAGTAAA 57.763 41.667 9.90 0.00 41.11 2.01
2985 3065 6.651086 TCTCTCCTCTCGATGAGTAGTAAAA 58.349 40.000 9.90 0.00 41.11 1.52
2986 3066 7.284074 TCTCTCCTCTCGATGAGTAGTAAAAT 58.716 38.462 9.90 0.00 41.11 1.82
2987 3067 8.430431 TCTCTCCTCTCGATGAGTAGTAAAATA 58.570 37.037 9.90 0.00 41.11 1.40
2988 3068 8.975663 TCTCCTCTCGATGAGTAGTAAAATAA 57.024 34.615 9.90 0.00 41.11 1.40
2989 3069 9.404848 TCTCCTCTCGATGAGTAGTAAAATAAA 57.595 33.333 9.90 0.00 41.11 1.40
3042 3122 9.679661 TTTTATAGAAGATGTTAAGGTGCATGA 57.320 29.630 0.00 0.00 0.00 3.07
3043 3123 8.893219 TTATAGAAGATGTTAAGGTGCATGAG 57.107 34.615 0.00 0.00 0.00 2.90
3044 3124 4.521146 AGAAGATGTTAAGGTGCATGAGG 58.479 43.478 0.00 0.00 0.00 3.86
3045 3125 4.018960 AGAAGATGTTAAGGTGCATGAGGT 60.019 41.667 0.00 0.00 0.00 3.85
3046 3126 3.878778 AGATGTTAAGGTGCATGAGGTC 58.121 45.455 0.00 0.00 0.00 3.85
3047 3127 2.489938 TGTTAAGGTGCATGAGGTCC 57.510 50.000 0.00 0.00 0.00 4.46
3048 3128 1.702401 TGTTAAGGTGCATGAGGTCCA 59.298 47.619 0.00 0.00 0.00 4.02
3049 3129 2.107378 TGTTAAGGTGCATGAGGTCCAA 59.893 45.455 0.00 0.00 0.00 3.53
3050 3130 3.153919 GTTAAGGTGCATGAGGTCCAAA 58.846 45.455 0.00 0.00 0.00 3.28
3051 3131 1.620822 AAGGTGCATGAGGTCCAAAC 58.379 50.000 0.00 0.00 0.00 2.93
3052 3132 0.251341 AGGTGCATGAGGTCCAAACC 60.251 55.000 0.00 0.00 46.87 3.27
3064 3144 3.802866 GGTCCAAACCAAAATTTCAGCA 58.197 40.909 0.00 0.00 45.68 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.220970 GCAGCCGCCTGACTTTATAAATAAA 60.221 40.000 0.00 0.00 41.77 1.40
1 2 4.274950 GCAGCCGCCTGACTTTATAAATAA 59.725 41.667 0.00 0.00 41.77 1.40
2 3 3.813166 GCAGCCGCCTGACTTTATAAATA 59.187 43.478 0.00 0.00 41.77 1.40
3 4 2.618709 GCAGCCGCCTGACTTTATAAAT 59.381 45.455 0.00 0.00 41.77 1.40
4 5 2.014128 GCAGCCGCCTGACTTTATAAA 58.986 47.619 0.00 0.00 41.77 1.40
5 6 1.663695 GCAGCCGCCTGACTTTATAA 58.336 50.000 0.00 0.00 41.77 0.98
6 7 3.379650 GCAGCCGCCTGACTTTATA 57.620 52.632 0.00 0.00 41.77 0.98
7 8 4.225497 GCAGCCGCCTGACTTTAT 57.775 55.556 0.00 0.00 41.77 1.40
17 18 0.108138 TTTAGAGAGAAGGCAGCCGC 60.108 55.000 5.55 2.03 37.44 6.53
18 19 2.003301 GTTTTAGAGAGAAGGCAGCCG 58.997 52.381 5.55 0.00 0.00 5.52
19 20 3.059352 TGTTTTAGAGAGAAGGCAGCC 57.941 47.619 1.84 1.84 0.00 4.85
20 21 3.815401 TGTTGTTTTAGAGAGAAGGCAGC 59.185 43.478 0.00 0.00 0.00 5.25
21 22 5.049818 CACTGTTGTTTTAGAGAGAAGGCAG 60.050 44.000 0.00 0.00 0.00 4.85
24 25 5.237344 CACCACTGTTGTTTTAGAGAGAAGG 59.763 44.000 0.00 0.00 0.00 3.46
33 34 1.025812 CCGCCACCACTGTTGTTTTA 58.974 50.000 0.00 0.00 0.00 1.52
37 38 1.600636 CATCCGCCACCACTGTTGT 60.601 57.895 0.00 0.00 0.00 3.32
38 39 2.981560 GCATCCGCCACCACTGTTG 61.982 63.158 0.00 0.00 0.00 3.33
47 48 0.179936 TACATGTGATGCATCCGCCA 59.820 50.000 23.67 16.96 35.19 5.69
49 50 0.236711 GCTACATGTGATGCATCCGC 59.763 55.000 23.67 16.32 35.19 5.54
59 60 1.858091 GATCCCGTCTGCTACATGTG 58.142 55.000 9.11 0.00 0.00 3.21
60 61 0.385751 CGATCCCGTCTGCTACATGT 59.614 55.000 2.69 2.69 0.00 3.21
71 72 1.296056 CCACTTTTTCGCGATCCCGT 61.296 55.000 10.88 2.39 38.24 5.28
79 80 0.179124 TGTTGCCACCACTTTTTCGC 60.179 50.000 0.00 0.00 0.00 4.70
114 115 2.148916 CTCGAGTAGCAACACCAACA 57.851 50.000 3.62 0.00 0.00 3.33
133 134 1.456705 AGATCTCGAGACCAGGGGC 60.457 63.158 19.30 1.56 0.00 5.80
135 136 0.106469 TCCAGATCTCGAGACCAGGG 60.106 60.000 19.30 14.20 0.00 4.45
138 139 1.098129 CGCTCCAGATCTCGAGACCA 61.098 60.000 19.30 0.00 0.00 4.02
148 149 0.103208 CGTAGGCTTTCGCTCCAGAT 59.897 55.000 0.00 0.00 36.09 2.90
151 152 1.214589 GACGTAGGCTTTCGCTCCA 59.785 57.895 10.73 0.00 36.09 3.86
197 198 6.721321 AGGCACAACGTAAAAATAATATCGG 58.279 36.000 0.00 0.00 0.00 4.18
204 205 8.784994 TCTTCAATAAGGCACAACGTAAAAATA 58.215 29.630 0.00 0.00 33.22 1.40
205 206 7.593644 GTCTTCAATAAGGCACAACGTAAAAAT 59.406 33.333 0.00 0.00 37.28 1.82
209 210 5.057819 TGTCTTCAATAAGGCACAACGTAA 58.942 37.500 0.00 0.00 42.34 3.18
211 212 3.472652 TGTCTTCAATAAGGCACAACGT 58.527 40.909 0.00 0.00 42.34 3.99
218 219 3.375299 ACGAGCAATGTCTTCAATAAGGC 59.625 43.478 0.00 0.00 37.86 4.35
219 220 6.851222 ATACGAGCAATGTCTTCAATAAGG 57.149 37.500 0.00 0.00 33.22 2.69
239 242 4.940046 TGGAGAACCGATCCGAGTATATAC 59.060 45.833 4.60 4.60 39.91 1.47
240 243 5.169992 TGGAGAACCGATCCGAGTATATA 57.830 43.478 0.00 0.00 39.91 0.86
249 252 0.902531 TCACCTTGGAGAACCGATCC 59.097 55.000 0.00 0.00 39.42 3.36
250 253 2.762535 TTCACCTTGGAGAACCGATC 57.237 50.000 0.00 0.00 39.42 3.69
252 255 2.567985 GTTTTCACCTTGGAGAACCGA 58.432 47.619 0.00 0.00 39.42 4.69
253 256 1.607148 GGTTTTCACCTTGGAGAACCG 59.393 52.381 0.00 0.00 40.74 4.44
294 297 4.585526 GTCGCCATCGCCGGATCA 62.586 66.667 5.05 0.00 35.26 2.92
302 305 1.061131 GACATTGAAGTGTCGCCATCG 59.939 52.381 0.00 0.00 39.12 3.84
303 306 2.813779 GACATTGAAGTGTCGCCATC 57.186 50.000 0.00 0.00 39.12 3.51
316 319 0.394216 TCATGAAGGGGGCGACATTG 60.394 55.000 0.00 0.00 0.00 2.82
318 321 0.107017 CTTCATGAAGGGGGCGACAT 60.107 55.000 25.14 0.00 34.87 3.06
332 335 5.291971 GTTCTTCAACAACAATGCCTTCAT 58.708 37.500 0.00 0.00 32.14 2.57
333 336 4.441356 GGTTCTTCAACAACAATGCCTTCA 60.441 41.667 0.00 0.00 33.70 3.02
334 337 4.051237 GGTTCTTCAACAACAATGCCTTC 58.949 43.478 0.00 0.00 33.70 3.46
336 339 3.299503 AGGTTCTTCAACAACAATGCCT 58.700 40.909 0.00 0.00 33.70 4.75
338 341 3.245990 GCAAGGTTCTTCAACAACAATGC 59.754 43.478 0.00 0.00 33.70 3.56
339 342 3.803778 GGCAAGGTTCTTCAACAACAATG 59.196 43.478 0.00 0.00 33.70 2.82
340 343 3.490761 CGGCAAGGTTCTTCAACAACAAT 60.491 43.478 0.00 0.00 33.70 2.71
344 347 1.673920 GACGGCAAGGTTCTTCAACAA 59.326 47.619 0.00 0.00 33.70 2.83
347 350 0.181587 TGGACGGCAAGGTTCTTCAA 59.818 50.000 0.00 0.00 0.00 2.69
352 355 2.877691 GCATGGACGGCAAGGTTC 59.122 61.111 0.00 0.00 0.00 3.62
369 372 1.339055 ACCAACCATCTCATGACACCG 60.339 52.381 0.00 0.00 0.00 4.94
390 393 9.262358 GACAAACTAGAGTAATGACAATATCCC 57.738 37.037 0.00 0.00 0.00 3.85
397 400 5.805486 GCATCGACAAACTAGAGTAATGACA 59.195 40.000 0.00 0.00 0.00 3.58
420 423 1.324736 CATGCGTAGACGAGGAAAAGC 59.675 52.381 6.19 0.00 43.02 3.51
439 465 3.788227 AAGACATACAAGGCCAAGTCA 57.212 42.857 5.01 0.00 0.00 3.41
445 471 4.489306 ACTAGGAAAGACATACAAGGCC 57.511 45.455 0.00 0.00 0.00 5.19
447 473 4.636206 GGCAACTAGGAAAGACATACAAGG 59.364 45.833 0.00 0.00 0.00 3.61
448 474 4.330074 CGGCAACTAGGAAAGACATACAAG 59.670 45.833 0.00 0.00 0.00 3.16
449 475 4.020928 TCGGCAACTAGGAAAGACATACAA 60.021 41.667 0.00 0.00 0.00 2.41
450 476 3.512329 TCGGCAACTAGGAAAGACATACA 59.488 43.478 0.00 0.00 0.00 2.29
451 477 3.864003 GTCGGCAACTAGGAAAGACATAC 59.136 47.826 0.00 0.00 0.00 2.39
454 481 1.336517 CGTCGGCAACTAGGAAAGACA 60.337 52.381 0.00 0.00 0.00 3.41
456 483 0.963962 ACGTCGGCAACTAGGAAAGA 59.036 50.000 0.00 0.00 0.00 2.52
461 488 1.193874 GAAAACACGTCGGCAACTAGG 59.806 52.381 0.00 0.00 0.00 3.02
464 491 1.085501 ACGAAAACACGTCGGCAACT 61.086 50.000 0.00 0.00 43.02 3.16
471 498 4.662394 GCATACTACACACGAAAACACGTC 60.662 45.833 0.00 0.00 44.76 4.34
481 508 2.923655 CAACCTCTGCATACTACACACG 59.076 50.000 0.00 0.00 0.00 4.49
483 510 3.056107 GTCCAACCTCTGCATACTACACA 60.056 47.826 0.00 0.00 0.00 3.72
493 534 2.607892 GCACACGTCCAACCTCTGC 61.608 63.158 0.00 0.00 0.00 4.26
494 535 0.946221 GAGCACACGTCCAACCTCTG 60.946 60.000 0.00 0.00 0.00 3.35
496 537 0.320771 ATGAGCACACGTCCAACCTC 60.321 55.000 0.00 0.00 0.00 3.85
498 539 0.238289 CAATGAGCACACGTCCAACC 59.762 55.000 0.00 0.00 0.00 3.77
501 542 2.233676 AGATACAATGAGCACACGTCCA 59.766 45.455 0.00 0.00 0.00 4.02
505 546 4.627035 TCAAGAAGATACAATGAGCACACG 59.373 41.667 0.00 0.00 0.00 4.49
521 562 8.918961 ATAGACTCAAACGAAGTATCAAGAAG 57.081 34.615 0.00 0.00 45.00 2.85
533 581 9.706691 AAGAGTGAATTTTATAGACTCAAACGA 57.293 29.630 0.00 0.00 36.34 3.85
570 618 2.073816 CGAACGAATTACTGGCCTGTT 58.926 47.619 21.33 2.47 0.00 3.16
572 620 1.722011 ACGAACGAATTACTGGCCTG 58.278 50.000 8.29 8.29 0.00 4.85
573 621 2.344025 GAACGAACGAATTACTGGCCT 58.656 47.619 3.32 0.00 0.00 5.19
574 622 1.395954 GGAACGAACGAATTACTGGCC 59.604 52.381 0.00 0.00 0.00 5.36
576 624 2.414138 GGTGGAACGAACGAATTACTGG 59.586 50.000 0.14 0.00 38.12 4.00
591 639 4.219919 TCCAGATATGACATACGGTGGAA 58.780 43.478 15.31 4.75 29.85 3.53
592 640 3.839778 TCCAGATATGACATACGGTGGA 58.160 45.455 14.28 14.28 0.00 4.02
602 650 4.903054 TCATCCAGCATTCCAGATATGAC 58.097 43.478 0.00 0.00 0.00 3.06
626 674 5.890110 ACATATTTTCGTATCACTGAGCG 57.110 39.130 0.77 0.77 0.00 5.03
627 675 7.126398 GGAAACATATTTTCGTATCACTGAGC 58.874 38.462 0.00 0.00 0.00 4.26
636 684 3.925299 TGACGCGGAAACATATTTTCGTA 59.075 39.130 12.47 0.00 46.75 3.43
639 687 4.331962 GAGTGACGCGGAAACATATTTTC 58.668 43.478 12.47 0.00 0.00 2.29
645 693 0.036388 ATGGAGTGACGCGGAAACAT 60.036 50.000 12.47 4.19 0.00 2.71
652 700 1.138036 TCCGTTATGGAGTGACGCG 59.862 57.895 3.53 3.53 43.74 6.01
783 835 8.279800 CGTGACGAATTATTAATCAAGGCATAA 58.720 33.333 0.00 0.00 0.00 1.90
784 836 7.439955 ACGTGACGAATTATTAATCAAGGCATA 59.560 33.333 13.70 0.00 0.00 3.14
821 873 1.063649 CACTACGAGCCGTGCGTAT 59.936 57.895 10.01 0.00 42.52 3.06
942 1001 0.260230 TGGTTGTTGAAGCAGGGGAA 59.740 50.000 0.00 0.00 34.63 3.97
954 1013 1.826487 GCCGGACTGGTTGGTTGTT 60.826 57.895 5.05 0.00 41.21 2.83
1026 1085 3.774528 CTGCTACTCCTGCCGCCA 61.775 66.667 0.00 0.00 0.00 5.69
1119 1178 0.930726 AGGAGGAAGAGGAGGTCGAT 59.069 55.000 0.00 0.00 0.00 3.59
1398 1457 3.822192 AGAGGCGACGCGTGCATA 61.822 61.111 20.70 0.00 34.13 3.14
1929 1997 2.434884 AACATCTGCCGGCTCACG 60.435 61.111 29.70 16.08 43.80 4.35
2013 2081 0.985490 AGAAGGCCTGGAGGATGACC 60.985 60.000 5.69 0.00 37.39 4.02
2034 2102 0.761802 GGAGGATGACCCAGATGTCC 59.238 60.000 0.00 0.00 37.41 4.02
2047 2115 3.227276 CTAGCCGCCGTGGAGGAT 61.227 66.667 13.32 8.93 45.00 3.24
2115 2187 8.529476 GTCCTAGTAGTTAAAGAAACATCCTGA 58.471 37.037 0.00 0.00 40.83 3.86
2136 2208 9.760926 AGAGCATGATTACTTATGATAGTCCTA 57.239 33.333 0.00 0.00 0.00 2.94
2139 2211 9.138062 CACAGAGCATGATTACTTATGATAGTC 57.862 37.037 0.00 0.00 0.00 2.59
2164 2241 4.200838 TCGTTGGAGCTAATCATGAACA 57.799 40.909 0.00 0.00 0.00 3.18
2207 2284 8.463607 GCCAGTTACAGCCAATATTAAAACTAA 58.536 33.333 0.00 0.00 0.00 2.24
2208 2285 7.992008 GCCAGTTACAGCCAATATTAAAACTA 58.008 34.615 0.00 0.00 0.00 2.24
2263 2343 6.011481 AGAGCCAAGAACAGTAGTACTACTT 58.989 40.000 29.08 18.13 43.35 2.24
2324 2404 1.945394 CTCTGGCCAAATCTGAATCCG 59.055 52.381 7.01 0.00 0.00 4.18
2506 2586 1.469940 GCGAGCATCCGGGTATGATAG 60.470 57.143 0.00 0.00 0.00 2.08
2510 2590 2.357517 GGCGAGCATCCGGGTATG 60.358 66.667 0.00 0.00 0.00 2.39
2511 2591 2.217038 ATGGCGAGCATCCGGGTAT 61.217 57.895 0.00 0.00 0.00 2.73
2513 2593 4.552365 CATGGCGAGCATCCGGGT 62.552 66.667 0.00 0.00 0.00 5.28
2514 2594 4.552365 ACATGGCGAGCATCCGGG 62.552 66.667 0.00 0.00 0.00 5.73
2515 2595 2.969238 GACATGGCGAGCATCCGG 60.969 66.667 0.00 0.00 0.00 5.14
2553 2633 9.764363 GTTCATCTTTCCCTAAAACAAAAGATT 57.236 29.630 6.48 0.00 42.75 2.40
2554 2634 8.923270 TGTTCATCTTTCCCTAAAACAAAAGAT 58.077 29.630 3.92 3.92 44.94 2.40
2555 2635 8.299990 TGTTCATCTTTCCCTAAAACAAAAGA 57.700 30.769 0.00 0.00 40.78 2.52
2556 2636 8.940768 TTGTTCATCTTTCCCTAAAACAAAAG 57.059 30.769 0.00 0.00 0.00 2.27
2557 2637 9.898152 ATTTGTTCATCTTTCCCTAAAACAAAA 57.102 25.926 12.67 0.67 35.53 2.44
2566 2646 9.258629 TGAATGATTATTTGTTCATCTTTCCCT 57.741 29.630 0.00 0.00 33.33 4.20
2588 2668 6.665992 TTAATCTACTAGGCACCGATGAAT 57.334 37.500 0.00 0.00 0.00 2.57
2611 2691 6.409524 ACTTCCACATGAATCACACAAATT 57.590 33.333 0.00 0.00 31.06 1.82
2619 2699 6.215495 TGATACGTACTTCCACATGAATCA 57.785 37.500 0.00 0.00 31.06 2.57
2652 2732 1.223487 GACAATCTAAGCGGGGCCA 59.777 57.895 4.39 0.00 0.00 5.36
2653 2733 1.887707 CGACAATCTAAGCGGGGCC 60.888 63.158 0.00 0.00 0.00 5.80
2654 2734 1.887707 CCGACAATCTAAGCGGGGC 60.888 63.158 0.00 0.00 40.08 5.80
2655 2735 4.438346 CCGACAATCTAAGCGGGG 57.562 61.111 0.00 0.00 40.08 5.73
2658 2738 1.732259 AGCAAACCGACAATCTAAGCG 59.268 47.619 0.00 0.00 0.00 4.68
2659 2739 2.096013 GGAGCAAACCGACAATCTAAGC 59.904 50.000 0.00 0.00 0.00 3.09
2660 2740 3.600388 AGGAGCAAACCGACAATCTAAG 58.400 45.455 0.00 0.00 34.73 2.18
2661 2741 3.695830 AGGAGCAAACCGACAATCTAA 57.304 42.857 0.00 0.00 34.73 2.10
2662 2742 4.811969 TTAGGAGCAAACCGACAATCTA 57.188 40.909 0.00 0.00 34.73 1.98
2663 2743 3.695830 TTAGGAGCAAACCGACAATCT 57.304 42.857 0.00 0.00 34.73 2.40
2664 2744 4.965119 ATTTAGGAGCAAACCGACAATC 57.035 40.909 0.00 0.00 34.73 2.67
2665 2745 5.124936 GGTTATTTAGGAGCAAACCGACAAT 59.875 40.000 0.00 0.00 31.09 2.71
2666 2746 4.456566 GGTTATTTAGGAGCAAACCGACAA 59.543 41.667 0.00 0.00 31.09 3.18
2667 2747 4.004982 GGTTATTTAGGAGCAAACCGACA 58.995 43.478 0.00 0.00 31.09 4.35
2668 2748 3.376234 GGGTTATTTAGGAGCAAACCGAC 59.624 47.826 0.00 0.00 40.42 4.79
2669 2749 3.613030 GGGTTATTTAGGAGCAAACCGA 58.387 45.455 0.00 0.00 40.42 4.69
2670 2750 2.686405 GGGGTTATTTAGGAGCAAACCG 59.314 50.000 0.00 0.00 40.42 4.44
2671 2751 2.686405 CGGGGTTATTTAGGAGCAAACC 59.314 50.000 0.00 0.00 39.09 3.27
2672 2752 3.349927 ACGGGGTTATTTAGGAGCAAAC 58.650 45.455 0.00 0.00 0.00 2.93
2673 2753 3.724732 ACGGGGTTATTTAGGAGCAAA 57.275 42.857 0.00 0.00 0.00 3.68
2674 2754 5.104444 TGAATACGGGGTTATTTAGGAGCAA 60.104 40.000 0.00 0.00 0.00 3.91
2675 2755 4.409574 TGAATACGGGGTTATTTAGGAGCA 59.590 41.667 0.00 0.00 0.00 4.26
2676 2756 4.964593 TGAATACGGGGTTATTTAGGAGC 58.035 43.478 0.00 0.00 0.00 4.70
2677 2757 8.152246 TGTATTGAATACGGGGTTATTTAGGAG 58.848 37.037 10.43 0.00 38.59 3.69
2678 2758 8.032045 TGTATTGAATACGGGGTTATTTAGGA 57.968 34.615 10.43 0.00 38.59 2.94
2679 2759 8.152246 TCTGTATTGAATACGGGGTTATTTAGG 58.848 37.037 20.63 0.00 41.43 2.69
2680 2760 8.985805 GTCTGTATTGAATACGGGGTTATTTAG 58.014 37.037 20.63 5.31 41.43 1.85
2681 2761 7.933033 GGTCTGTATTGAATACGGGGTTATTTA 59.067 37.037 20.63 0.15 41.43 1.40
2682 2762 6.769341 GGTCTGTATTGAATACGGGGTTATTT 59.231 38.462 20.63 0.00 41.43 1.40
2683 2763 6.100714 AGGTCTGTATTGAATACGGGGTTATT 59.899 38.462 20.63 2.76 41.43 1.40
2684 2764 5.605488 AGGTCTGTATTGAATACGGGGTTAT 59.395 40.000 20.63 4.15 41.43 1.89
2685 2765 4.964262 AGGTCTGTATTGAATACGGGGTTA 59.036 41.667 20.63 2.41 41.43 2.85
2686 2766 3.778629 AGGTCTGTATTGAATACGGGGTT 59.221 43.478 20.63 6.80 41.43 4.11
2687 2767 3.381335 AGGTCTGTATTGAATACGGGGT 58.619 45.455 20.63 6.26 41.43 4.95
2688 2768 3.244112 GGAGGTCTGTATTGAATACGGGG 60.244 52.174 20.63 9.49 41.43 5.73
2689 2769 3.552273 CGGAGGTCTGTATTGAATACGGG 60.552 52.174 20.63 11.57 41.43 5.28
2690 2770 3.639538 CGGAGGTCTGTATTGAATACGG 58.360 50.000 16.21 16.21 42.26 4.02
2707 2787 1.064060 GAATGAAAACGATGGCCGGAG 59.936 52.381 5.05 0.00 43.93 4.63
2708 2788 1.091537 GAATGAAAACGATGGCCGGA 58.908 50.000 5.05 0.00 43.93 5.14
2709 2789 0.100503 GGAATGAAAACGATGGCCGG 59.899 55.000 0.00 0.00 43.93 6.13
2710 2790 0.808125 TGGAATGAAAACGATGGCCG 59.192 50.000 0.00 0.00 45.44 6.13
2711 2791 3.548014 CGTATGGAATGAAAACGATGGCC 60.548 47.826 0.00 0.00 35.66 5.36
2712 2792 3.548014 CCGTATGGAATGAAAACGATGGC 60.548 47.826 0.00 0.00 37.49 4.40
2713 2793 3.874543 TCCGTATGGAATGAAAACGATGG 59.125 43.478 0.00 0.00 42.85 3.51
2726 2806 2.182284 CGCCGTGTTCCGTATGGA 59.818 61.111 0.00 0.00 44.61 3.41
2727 2807 2.888534 CCGCCGTGTTCCGTATGG 60.889 66.667 0.00 0.00 33.66 2.74
2728 2808 3.560278 GCCGCCGTGTTCCGTATG 61.560 66.667 0.00 0.00 33.66 2.39
2729 2809 4.825252 GGCCGCCGTGTTCCGTAT 62.825 66.667 0.00 0.00 33.66 3.06
2740 2820 1.868469 TGTGTATATTAACGGCCGCC 58.132 50.000 28.58 0.00 0.00 6.13
2741 2821 2.803956 ACATGTGTATATTAACGGCCGC 59.196 45.455 28.58 6.62 0.00 6.53
2742 2822 5.463286 TCTACATGTGTATATTAACGGCCG 58.537 41.667 26.86 26.86 0.00 6.13
2743 2823 7.900782 AATCTACATGTGTATATTAACGGCC 57.099 36.000 9.11 0.00 29.23 6.13
2774 2854 9.747898 TTGGAACAGGTGTAATTTTATACATCT 57.252 29.630 0.00 0.00 45.79 2.90
2776 2856 8.466798 GCTTGGAACAGGTGTAATTTTATACAT 58.533 33.333 0.63 0.00 42.39 2.29
2777 2857 7.094118 GGCTTGGAACAGGTGTAATTTTATACA 60.094 37.037 0.63 0.00 42.39 2.29
2778 2858 7.255569 GGCTTGGAACAGGTGTAATTTTATAC 58.744 38.462 0.00 0.00 42.39 1.47
2779 2859 6.094325 CGGCTTGGAACAGGTGTAATTTTATA 59.906 38.462 0.00 0.00 42.39 0.98
2780 2860 5.105917 CGGCTTGGAACAGGTGTAATTTTAT 60.106 40.000 0.00 0.00 42.39 1.40
2781 2861 4.216687 CGGCTTGGAACAGGTGTAATTTTA 59.783 41.667 0.00 0.00 42.39 1.52
2782 2862 3.005367 CGGCTTGGAACAGGTGTAATTTT 59.995 43.478 0.00 0.00 42.39 1.82
2783 2863 2.556622 CGGCTTGGAACAGGTGTAATTT 59.443 45.455 0.00 0.00 42.39 1.82
2784 2864 2.159382 CGGCTTGGAACAGGTGTAATT 58.841 47.619 0.00 0.00 42.39 1.40
2785 2865 1.613255 CCGGCTTGGAACAGGTGTAAT 60.613 52.381 0.00 0.00 42.39 1.89
2786 2866 0.250553 CCGGCTTGGAACAGGTGTAA 60.251 55.000 0.00 0.00 42.39 2.41
2787 2867 1.373435 CCGGCTTGGAACAGGTGTA 59.627 57.895 0.00 0.00 42.39 2.90
2788 2868 2.113139 CCGGCTTGGAACAGGTGT 59.887 61.111 0.00 0.00 42.39 4.16
2789 2869 2.672996 CCCGGCTTGGAACAGGTG 60.673 66.667 0.00 0.00 42.39 4.00
2790 2870 2.292785 AAACCCGGCTTGGAACAGGT 62.293 55.000 0.00 0.00 42.39 4.00
2791 2871 0.250989 TAAACCCGGCTTGGAACAGG 60.251 55.000 0.00 0.00 42.39 4.00
2792 2872 1.268625 GTTAAACCCGGCTTGGAACAG 59.731 52.381 0.00 0.00 42.39 3.16
2793 2873 1.320507 GTTAAACCCGGCTTGGAACA 58.679 50.000 0.00 0.00 42.00 3.18
2794 2874 0.599558 GGTTAAACCCGGCTTGGAAC 59.400 55.000 0.00 0.00 42.00 3.62
2795 2875 0.479378 AGGTTAAACCCGGCTTGGAA 59.521 50.000 0.00 0.00 39.75 3.53
2796 2876 0.479378 AAGGTTAAACCCGGCTTGGA 59.521 50.000 0.00 0.00 39.75 3.53
2797 2877 1.334160 AAAGGTTAAACCCGGCTTGG 58.666 50.000 0.00 0.00 39.75 3.61
2798 2878 3.127589 CAAAAAGGTTAAACCCGGCTTG 58.872 45.455 0.00 0.00 39.75 4.01
2799 2879 3.032459 TCAAAAAGGTTAAACCCGGCTT 58.968 40.909 0.00 0.00 39.75 4.35
2800 2880 2.668625 TCAAAAAGGTTAAACCCGGCT 58.331 42.857 0.00 0.00 39.75 5.52
2801 2881 3.455990 TTCAAAAAGGTTAAACCCGGC 57.544 42.857 0.00 0.00 39.75 6.13
2802 2882 5.265350 TCTTTCAAAAAGGTTAAACCCGG 57.735 39.130 0.00 0.00 39.75 5.73
2803 2883 8.874744 TTATTCTTTCAAAAAGGTTAAACCCG 57.125 30.769 0.00 0.00 39.75 5.28
2906 2986 8.887717 CAAGGTCAAAGACTTAGAGGAATTATG 58.112 37.037 0.00 0.00 32.47 1.90
2907 2987 8.049721 CCAAGGTCAAAGACTTAGAGGAATTAT 58.950 37.037 0.00 0.00 32.47 1.28
2908 2988 7.394816 CCAAGGTCAAAGACTTAGAGGAATTA 58.605 38.462 0.00 0.00 32.47 1.40
2909 2989 6.241645 CCAAGGTCAAAGACTTAGAGGAATT 58.758 40.000 0.00 0.00 32.47 2.17
2910 2990 5.280727 CCCAAGGTCAAAGACTTAGAGGAAT 60.281 44.000 0.00 0.00 32.47 3.01
2911 2991 4.041691 CCCAAGGTCAAAGACTTAGAGGAA 59.958 45.833 0.00 0.00 32.47 3.36
2912 2992 3.583086 CCCAAGGTCAAAGACTTAGAGGA 59.417 47.826 0.00 0.00 32.47 3.71
2913 2993 3.870299 GCCCAAGGTCAAAGACTTAGAGG 60.870 52.174 0.00 0.00 32.47 3.69
2914 2994 3.339141 GCCCAAGGTCAAAGACTTAGAG 58.661 50.000 0.00 0.00 32.47 2.43
2915 2995 2.039879 GGCCCAAGGTCAAAGACTTAGA 59.960 50.000 0.00 0.00 32.47 2.10
2916 2996 2.437413 GGCCCAAGGTCAAAGACTTAG 58.563 52.381 0.00 0.00 32.47 2.18
2917 2997 1.271163 CGGCCCAAGGTCAAAGACTTA 60.271 52.381 0.00 0.00 32.47 2.24
2918 2998 0.537371 CGGCCCAAGGTCAAAGACTT 60.537 55.000 0.00 0.00 32.47 3.01
2919 2999 1.073199 CGGCCCAAGGTCAAAGACT 59.927 57.895 0.00 0.00 32.47 3.24
2920 3000 0.536460 TTCGGCCCAAGGTCAAAGAC 60.536 55.000 0.00 0.00 0.00 3.01
2921 3001 0.183971 TTTCGGCCCAAGGTCAAAGA 59.816 50.000 0.00 0.00 0.00 2.52
2922 3002 1.036707 TTTTCGGCCCAAGGTCAAAG 58.963 50.000 0.00 0.00 0.00 2.77
2923 3003 1.616374 GATTTTCGGCCCAAGGTCAAA 59.384 47.619 0.00 0.00 0.00 2.69
2924 3004 1.253100 GATTTTCGGCCCAAGGTCAA 58.747 50.000 0.00 0.00 0.00 3.18
2925 3005 0.610785 GGATTTTCGGCCCAAGGTCA 60.611 55.000 0.00 0.00 0.00 4.02
2926 3006 0.610785 TGGATTTTCGGCCCAAGGTC 60.611 55.000 0.00 0.00 0.00 3.85
2927 3007 0.041090 ATGGATTTTCGGCCCAAGGT 59.959 50.000 0.00 0.00 33.15 3.50
2928 3008 1.194218 AATGGATTTTCGGCCCAAGG 58.806 50.000 0.00 0.00 33.15 3.61
2929 3009 3.333029 AAAATGGATTTTCGGCCCAAG 57.667 42.857 0.00 0.00 35.18 3.61
2930 3010 3.778954 AAAAATGGATTTTCGGCCCAA 57.221 38.095 0.00 0.00 38.92 4.12
2931 3011 5.163395 GGTATAAAAATGGATTTTCGGCCCA 60.163 40.000 0.00 0.00 41.42 5.36
2932 3012 5.294356 GGTATAAAAATGGATTTTCGGCCC 58.706 41.667 0.00 0.00 41.42 5.80
2933 3013 5.294356 GGGTATAAAAATGGATTTTCGGCC 58.706 41.667 0.00 0.00 41.42 6.13
2934 3014 4.979815 CGGGTATAAAAATGGATTTTCGGC 59.020 41.667 0.00 0.00 41.42 5.54
2935 3015 6.380095 TCGGGTATAAAAATGGATTTTCGG 57.620 37.500 0.00 0.00 41.42 4.30
2936 3016 5.912955 GCTCGGGTATAAAAATGGATTTTCG 59.087 40.000 0.00 0.00 41.42 3.46
2937 3017 7.013369 AGAGCTCGGGTATAAAAATGGATTTTC 59.987 37.037 8.37 0.00 41.42 2.29
2938 3018 6.833933 AGAGCTCGGGTATAAAAATGGATTTT 59.166 34.615 8.37 0.00 43.52 1.82
2939 3019 6.365520 AGAGCTCGGGTATAAAAATGGATTT 58.634 36.000 8.37 0.00 0.00 2.17
2940 3020 5.941788 AGAGCTCGGGTATAAAAATGGATT 58.058 37.500 8.37 0.00 0.00 3.01
2941 3021 5.308237 AGAGAGCTCGGGTATAAAAATGGAT 59.692 40.000 8.37 0.00 34.09 3.41
2942 3022 4.654262 AGAGAGCTCGGGTATAAAAATGGA 59.346 41.667 8.37 0.00 34.09 3.41
2943 3023 4.962155 AGAGAGCTCGGGTATAAAAATGG 58.038 43.478 8.37 0.00 34.09 3.16
2944 3024 4.991687 GGAGAGAGCTCGGGTATAAAAATG 59.008 45.833 8.37 0.00 42.25 2.32
2945 3025 4.902448 AGGAGAGAGCTCGGGTATAAAAAT 59.098 41.667 8.37 0.00 42.25 1.82
2946 3026 4.287552 AGGAGAGAGCTCGGGTATAAAAA 58.712 43.478 8.37 0.00 42.25 1.94
2947 3027 3.890147 GAGGAGAGAGCTCGGGTATAAAA 59.110 47.826 8.37 0.00 42.25 1.52
2948 3028 3.138653 AGAGGAGAGAGCTCGGGTATAAA 59.861 47.826 8.37 0.00 42.25 1.40
2949 3029 2.712087 AGAGGAGAGAGCTCGGGTATAA 59.288 50.000 8.37 0.00 42.25 0.98
2950 3030 2.303600 GAGAGGAGAGAGCTCGGGTATA 59.696 54.545 8.37 0.00 42.25 1.47
2951 3031 1.073284 GAGAGGAGAGAGCTCGGGTAT 59.927 57.143 8.37 0.00 42.25 2.73
2952 3032 0.470766 GAGAGGAGAGAGCTCGGGTA 59.529 60.000 8.37 0.00 42.25 3.69
2953 3033 1.226262 GAGAGGAGAGAGCTCGGGT 59.774 63.158 8.37 0.00 42.25 5.28
2954 3034 1.891919 CGAGAGGAGAGAGCTCGGG 60.892 68.421 8.37 0.00 45.54 5.14
2955 3035 3.731136 CGAGAGGAGAGAGCTCGG 58.269 66.667 8.37 0.00 45.54 4.63
2957 3037 2.146342 CTCATCGAGAGGAGAGAGCTC 58.854 57.143 5.27 5.27 41.37 4.09
2958 3038 2.260844 CTCATCGAGAGGAGAGAGCT 57.739 55.000 8.90 0.00 41.37 4.09
3016 3096 9.679661 TCATGCACCTTAACATCTTCTATAAAA 57.320 29.630 0.00 0.00 0.00 1.52
3017 3097 9.330063 CTCATGCACCTTAACATCTTCTATAAA 57.670 33.333 0.00 0.00 0.00 1.40
3018 3098 7.933577 CCTCATGCACCTTAACATCTTCTATAA 59.066 37.037 0.00 0.00 0.00 0.98
3019 3099 7.071196 ACCTCATGCACCTTAACATCTTCTATA 59.929 37.037 0.00 0.00 0.00 1.31
3020 3100 6.126652 ACCTCATGCACCTTAACATCTTCTAT 60.127 38.462 0.00 0.00 0.00 1.98
3021 3101 5.189736 ACCTCATGCACCTTAACATCTTCTA 59.810 40.000 0.00 0.00 0.00 2.10
3022 3102 4.018960 ACCTCATGCACCTTAACATCTTCT 60.019 41.667 0.00 0.00 0.00 2.85
3023 3103 4.265073 ACCTCATGCACCTTAACATCTTC 58.735 43.478 0.00 0.00 0.00 2.87
3024 3104 4.265073 GACCTCATGCACCTTAACATCTT 58.735 43.478 0.00 0.00 0.00 2.40
3025 3105 3.370953 GGACCTCATGCACCTTAACATCT 60.371 47.826 0.00 0.00 0.00 2.90
3026 3106 2.945668 GGACCTCATGCACCTTAACATC 59.054 50.000 0.00 0.00 0.00 3.06
3027 3107 2.308570 TGGACCTCATGCACCTTAACAT 59.691 45.455 0.00 0.00 0.00 2.71
3028 3108 1.702401 TGGACCTCATGCACCTTAACA 59.298 47.619 0.00 0.00 0.00 2.41
3029 3109 2.489938 TGGACCTCATGCACCTTAAC 57.510 50.000 0.00 0.00 0.00 2.01
3030 3110 3.153919 GTTTGGACCTCATGCACCTTAA 58.846 45.455 0.00 0.00 0.00 1.85
3031 3111 2.554344 GGTTTGGACCTCATGCACCTTA 60.554 50.000 0.00 0.00 42.99 2.69
3032 3112 1.620822 GTTTGGACCTCATGCACCTT 58.379 50.000 0.00 0.00 0.00 3.50
3033 3113 0.251341 GGTTTGGACCTCATGCACCT 60.251 55.000 0.00 0.00 42.99 4.00
3034 3114 0.539438 TGGTTTGGACCTCATGCACC 60.539 55.000 0.00 0.00 46.66 5.01
3035 3115 1.327303 TTGGTTTGGACCTCATGCAC 58.673 50.000 0.00 0.00 46.66 4.57
3036 3116 2.079170 TTTGGTTTGGACCTCATGCA 57.921 45.000 0.00 0.00 46.66 3.96
3037 3117 3.683365 ATTTTGGTTTGGACCTCATGC 57.317 42.857 0.00 0.00 46.66 4.06
3038 3118 5.609423 TGAAATTTTGGTTTGGACCTCATG 58.391 37.500 0.00 0.00 46.66 3.07
3039 3119 5.742838 GCTGAAATTTTGGTTTGGACCTCAT 60.743 40.000 0.00 0.00 46.66 2.90
3040 3120 4.442753 GCTGAAATTTTGGTTTGGACCTCA 60.443 41.667 0.00 0.00 46.66 3.86
3041 3121 4.058124 GCTGAAATTTTGGTTTGGACCTC 58.942 43.478 0.00 0.00 46.66 3.85
3042 3122 3.454082 TGCTGAAATTTTGGTTTGGACCT 59.546 39.130 0.00 0.00 46.66 3.85
3043 3123 3.802866 TGCTGAAATTTTGGTTTGGACC 58.197 40.909 0.00 0.00 46.71 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.