Multiple sequence alignment - TraesCS3B01G178700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G178700 chr3B 100.000 3136 0 0 1 3136 183476292 183479427 0.000000e+00 5792
1 TraesCS3B01G178700 chr3B 98.462 3055 43 4 82 3136 761378844 761381894 0.000000e+00 5378
2 TraesCS3B01G178700 chr3B 98.364 3056 47 3 82 3136 766969476 766972529 0.000000e+00 5363
3 TraesCS3B01G178700 chr1B 98.920 3055 29 2 82 3136 310368153 310371203 0.000000e+00 5456
4 TraesCS3B01G178700 chr7B 98.527 3055 43 2 82 3136 253903495 253906547 0.000000e+00 5391
5 TraesCS3B01G178700 chr4B 98.527 3056 41 4 82 3136 468285209 468282157 0.000000e+00 5391
6 TraesCS3B01G178700 chr5B 98.462 3055 42 3 82 3136 579529875 579532924 0.000000e+00 5376
7 TraesCS3B01G178700 chr4A 98.396 3055 47 2 82 3136 463885913 463882861 0.000000e+00 5369
8 TraesCS3B01G178700 chr5A 98.363 3055 48 2 82 3136 549962796 549965848 0.000000e+00 5363
9 TraesCS3B01G178700 chr1A 98.363 3055 47 3 82 3136 64885527 64888578 0.000000e+00 5361
10 TraesCS3B01G178700 chr3A 91.765 85 2 1 1 85 141885490 141885569 2.560000e-21 113
11 TraesCS3B01G178700 chr3D 98.305 59 1 0 1 59 129359609 129359667 1.540000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G178700 chr3B 183476292 183479427 3135 False 5792 5792 100.000 1 3136 1 chr3B.!!$F1 3135
1 TraesCS3B01G178700 chr3B 761378844 761381894 3050 False 5378 5378 98.462 82 3136 1 chr3B.!!$F2 3054
2 TraesCS3B01G178700 chr3B 766969476 766972529 3053 False 5363 5363 98.364 82 3136 1 chr3B.!!$F3 3054
3 TraesCS3B01G178700 chr1B 310368153 310371203 3050 False 5456 5456 98.920 82 3136 1 chr1B.!!$F1 3054
4 TraesCS3B01G178700 chr7B 253903495 253906547 3052 False 5391 5391 98.527 82 3136 1 chr7B.!!$F1 3054
5 TraesCS3B01G178700 chr4B 468282157 468285209 3052 True 5391 5391 98.527 82 3136 1 chr4B.!!$R1 3054
6 TraesCS3B01G178700 chr5B 579529875 579532924 3049 False 5376 5376 98.462 82 3136 1 chr5B.!!$F1 3054
7 TraesCS3B01G178700 chr4A 463882861 463885913 3052 True 5369 5369 98.396 82 3136 1 chr4A.!!$R1 3054
8 TraesCS3B01G178700 chr5A 549962796 549965848 3052 False 5363 5363 98.363 82 3136 1 chr5A.!!$F1 3054
9 TraesCS3B01G178700 chr1A 64885527 64888578 3051 False 5361 5361 98.363 82 3136 1 chr1A.!!$F1 3054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.616111 ACTACAGCTACTGGCCTGCT 60.616 55.000 9.95 8.34 43.05 4.24 F
73 74 2.809861 TACTGGCCTGCTGCTGCTTC 62.810 60.000 17.00 5.57 40.92 3.86 F
1407 1414 1.134367 GGATGTCTCGTTGATCACCGA 59.866 52.381 14.93 14.93 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 1414 0.962489 CCTCCCGTCGATAGCAAGAT 59.038 55.000 0.00 0.0 0.00 2.40 R
1864 1873 4.248058 CGCATCATCCAGCTACATATGAA 58.752 43.478 10.38 0.0 32.47 2.57 R
2339 2348 1.000274 GCAAATGAAACTCAACCGCCT 60.000 47.619 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.978934 GATGCCATCAATTTCAAATGTCC 57.021 39.130 0.00 0.00 0.00 4.02
23 24 4.205065 TGCCATCAATTTCAAATGTCCC 57.795 40.909 0.00 0.00 0.00 4.46
24 25 3.581770 TGCCATCAATTTCAAATGTCCCA 59.418 39.130 0.00 0.00 0.00 4.37
25 26 4.041321 TGCCATCAATTTCAAATGTCCCAA 59.959 37.500 0.00 0.00 0.00 4.12
26 27 4.632688 GCCATCAATTTCAAATGTCCCAAG 59.367 41.667 0.00 0.00 0.00 3.61
27 28 4.632688 CCATCAATTTCAAATGTCCCAAGC 59.367 41.667 0.00 0.00 0.00 4.01
28 29 4.952071 TCAATTTCAAATGTCCCAAGCA 57.048 36.364 0.00 0.00 0.00 3.91
29 30 4.885413 TCAATTTCAAATGTCCCAAGCAG 58.115 39.130 0.00 0.00 0.00 4.24
30 31 4.588106 TCAATTTCAAATGTCCCAAGCAGA 59.412 37.500 0.00 0.00 0.00 4.26
31 32 5.070180 TCAATTTCAAATGTCCCAAGCAGAA 59.930 36.000 0.00 0.00 0.00 3.02
32 33 5.549742 ATTTCAAATGTCCCAAGCAGAAA 57.450 34.783 0.00 0.00 0.00 2.52
33 34 5.350504 TTTCAAATGTCCCAAGCAGAAAA 57.649 34.783 0.00 0.00 0.00 2.29
34 35 4.589216 TCAAATGTCCCAAGCAGAAAAG 57.411 40.909 0.00 0.00 0.00 2.27
35 36 4.214310 TCAAATGTCCCAAGCAGAAAAGA 58.786 39.130 0.00 0.00 0.00 2.52
36 37 4.834496 TCAAATGTCCCAAGCAGAAAAGAT 59.166 37.500 0.00 0.00 0.00 2.40
37 38 5.047802 TCAAATGTCCCAAGCAGAAAAGATC 60.048 40.000 0.00 0.00 0.00 2.75
38 39 2.795329 TGTCCCAAGCAGAAAAGATCC 58.205 47.619 0.00 0.00 0.00 3.36
39 40 2.376518 TGTCCCAAGCAGAAAAGATCCT 59.623 45.455 0.00 0.00 0.00 3.24
40 41 3.181429 TGTCCCAAGCAGAAAAGATCCTT 60.181 43.478 0.00 0.00 0.00 3.36
41 42 3.441922 GTCCCAAGCAGAAAAGATCCTTC 59.558 47.826 0.00 0.00 0.00 3.46
42 43 2.757314 CCCAAGCAGAAAAGATCCTTCC 59.243 50.000 2.31 0.00 0.00 3.46
43 44 3.563043 CCCAAGCAGAAAAGATCCTTCCT 60.563 47.826 2.31 0.00 0.00 3.36
44 45 4.085009 CCAAGCAGAAAAGATCCTTCCTT 58.915 43.478 2.31 0.00 0.00 3.36
45 46 4.525874 CCAAGCAGAAAAGATCCTTCCTTT 59.474 41.667 2.31 0.00 35.55 3.11
46 47 5.711976 CCAAGCAGAAAAGATCCTTCCTTTA 59.288 40.000 2.31 0.00 33.85 1.85
47 48 6.349694 CCAAGCAGAAAAGATCCTTCCTTTAC 60.350 42.308 2.31 0.00 33.85 2.01
48 49 6.133253 AGCAGAAAAGATCCTTCCTTTACT 57.867 37.500 2.31 0.00 33.85 2.24
49 50 7.259088 AGCAGAAAAGATCCTTCCTTTACTA 57.741 36.000 2.31 0.00 33.85 1.82
50 51 7.106890 AGCAGAAAAGATCCTTCCTTTACTAC 58.893 38.462 2.31 0.00 33.85 2.73
51 52 6.879458 GCAGAAAAGATCCTTCCTTTACTACA 59.121 38.462 2.31 0.00 33.85 2.74
52 53 7.065204 GCAGAAAAGATCCTTCCTTTACTACAG 59.935 40.741 2.31 0.00 33.85 2.74
53 54 7.065204 CAGAAAAGATCCTTCCTTTACTACAGC 59.935 40.741 2.31 0.00 33.85 4.40
54 55 6.628644 AAAGATCCTTCCTTTACTACAGCT 57.371 37.500 0.00 0.00 32.59 4.24
55 56 7.735326 AAAGATCCTTCCTTTACTACAGCTA 57.265 36.000 0.00 0.00 32.59 3.32
56 57 6.718522 AGATCCTTCCTTTACTACAGCTAC 57.281 41.667 0.00 0.00 0.00 3.58
57 58 6.436890 AGATCCTTCCTTTACTACAGCTACT 58.563 40.000 0.00 0.00 0.00 2.57
58 59 5.916661 TCCTTCCTTTACTACAGCTACTG 57.083 43.478 0.00 0.00 37.52 2.74
59 60 4.710375 TCCTTCCTTTACTACAGCTACTGG 59.290 45.833 0.00 0.00 35.51 4.00
60 61 4.434520 CTTCCTTTACTACAGCTACTGGC 58.565 47.826 0.00 0.00 42.19 4.85
61 62 2.764572 TCCTTTACTACAGCTACTGGCC 59.235 50.000 0.00 0.00 43.05 5.36
62 63 2.766828 CCTTTACTACAGCTACTGGCCT 59.233 50.000 3.32 0.00 43.05 5.19
63 64 3.430929 CCTTTACTACAGCTACTGGCCTG 60.431 52.174 8.29 8.29 43.05 4.85
64 65 1.112113 TACTACAGCTACTGGCCTGC 58.888 55.000 9.95 6.04 43.05 4.85
65 66 0.616111 ACTACAGCTACTGGCCTGCT 60.616 55.000 9.95 8.34 43.05 4.24
67 68 2.823147 CAGCTACTGGCCTGCTGC 60.823 66.667 20.86 18.62 45.76 5.25
68 69 3.007920 AGCTACTGGCCTGCTGCT 61.008 61.111 19.35 19.35 43.05 4.24
69 70 2.823147 GCTACTGGCCTGCTGCTG 60.823 66.667 9.95 0.00 40.92 4.41
70 71 2.823147 CTACTGGCCTGCTGCTGC 60.823 66.667 9.95 8.89 40.92 5.25
71 72 3.324930 TACTGGCCTGCTGCTGCT 61.325 61.111 17.00 0.00 40.92 4.24
72 73 2.816601 CTACTGGCCTGCTGCTGCTT 62.817 60.000 17.00 0.00 40.92 3.91
73 74 2.809861 TACTGGCCTGCTGCTGCTTC 62.810 60.000 17.00 5.57 40.92 3.86
75 76 4.737177 GGCCTGCTGCTGCTTCCT 62.737 66.667 17.00 0.00 40.92 3.36
76 77 3.132801 GCCTGCTGCTGCTTCCTC 61.133 66.667 17.00 0.00 40.48 3.71
77 78 2.818714 CCTGCTGCTGCTTCCTCG 60.819 66.667 17.00 0.00 40.48 4.63
78 79 3.497932 CTGCTGCTGCTTCCTCGC 61.498 66.667 17.00 0.00 40.48 5.03
79 80 4.318949 TGCTGCTGCTTCCTCGCA 62.319 61.111 17.00 0.00 40.48 5.10
80 81 3.052082 GCTGCTGCTTCCTCGCAA 61.052 61.111 8.53 0.00 39.80 4.85
489 492 4.708177 AGATTTGATCCGTGGATTCGATT 58.292 39.130 2.32 0.00 34.60 3.34
1407 1414 1.134367 GGATGTCTCGTTGATCACCGA 59.866 52.381 14.93 14.93 0.00 4.69
2133 2142 0.172803 GGACACGATTACGCCTGAGT 59.827 55.000 0.00 0.00 43.96 3.41
2339 2348 2.505407 AGTGCCCACTGATATGCAACTA 59.495 45.455 0.00 0.00 40.75 2.24
2367 2376 0.881118 AGTTTCATTTGCCGCATCGT 59.119 45.000 0.00 0.00 0.00 3.73
2435 2444 1.659098 GGACACGGATAAAGCACTTCG 59.341 52.381 0.00 0.00 0.00 3.79
2669 2678 7.654520 ACTCACTTGCTTTTGATAACTACGTAA 59.345 33.333 0.00 0.00 0.00 3.18
2735 2744 9.166173 CGGCATATAATGAGGATATTCTTGAAA 57.834 33.333 0.00 0.00 0.00 2.69
2930 2939 2.176273 GCAGCGCACCGAGATCAAT 61.176 57.895 11.47 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.812626 GGGACATTTGAAATTGATGGCATC 59.187 41.667 20.52 20.52 30.25 3.91
1 2 4.225492 TGGGACATTTGAAATTGATGGCAT 59.775 37.500 0.00 0.00 30.25 4.40
2 3 3.581770 TGGGACATTTGAAATTGATGGCA 59.418 39.130 0.00 0.00 30.25 4.92
3 4 4.205065 TGGGACATTTGAAATTGATGGC 57.795 40.909 0.00 0.00 0.00 4.40
4 5 4.632688 GCTTGGGACATTTGAAATTGATGG 59.367 41.667 0.00 0.00 39.30 3.51
5 6 5.239351 TGCTTGGGACATTTGAAATTGATG 58.761 37.500 0.00 0.00 39.30 3.07
6 7 5.246656 TCTGCTTGGGACATTTGAAATTGAT 59.753 36.000 0.00 0.00 39.30 2.57
7 8 4.588106 TCTGCTTGGGACATTTGAAATTGA 59.412 37.500 0.00 0.00 39.30 2.57
8 9 4.885413 TCTGCTTGGGACATTTGAAATTG 58.115 39.130 0.00 0.00 39.30 2.32
9 10 5.549742 TTCTGCTTGGGACATTTGAAATT 57.450 34.783 0.00 0.00 39.30 1.82
10 11 5.549742 TTTCTGCTTGGGACATTTGAAAT 57.450 34.783 0.00 0.00 39.30 2.17
11 12 5.128499 TCTTTTCTGCTTGGGACATTTGAAA 59.872 36.000 0.00 0.00 39.30 2.69
12 13 4.648762 TCTTTTCTGCTTGGGACATTTGAA 59.351 37.500 0.00 0.00 39.30 2.69
13 14 4.214310 TCTTTTCTGCTTGGGACATTTGA 58.786 39.130 0.00 0.00 39.30 2.69
14 15 4.589216 TCTTTTCTGCTTGGGACATTTG 57.411 40.909 0.00 0.00 39.30 2.32
15 16 4.221482 GGATCTTTTCTGCTTGGGACATTT 59.779 41.667 0.00 0.00 39.30 2.32
16 17 3.766051 GGATCTTTTCTGCTTGGGACATT 59.234 43.478 0.00 0.00 39.30 2.71
17 18 3.011032 AGGATCTTTTCTGCTTGGGACAT 59.989 43.478 0.00 0.00 39.30 3.06
18 19 2.376518 AGGATCTTTTCTGCTTGGGACA 59.623 45.455 0.00 0.00 0.00 4.02
19 20 3.078891 AGGATCTTTTCTGCTTGGGAC 57.921 47.619 0.00 0.00 0.00 4.46
20 21 3.562176 GGAAGGATCTTTTCTGCTTGGGA 60.562 47.826 9.36 0.00 0.00 4.37
21 22 2.757314 GGAAGGATCTTTTCTGCTTGGG 59.243 50.000 9.36 0.00 0.00 4.12
22 23 3.694926 AGGAAGGATCTTTTCTGCTTGG 58.305 45.455 0.00 0.00 0.00 3.61
23 24 5.718724 AAAGGAAGGATCTTTTCTGCTTG 57.281 39.130 0.00 0.00 29.66 4.01
24 25 6.547402 AGTAAAGGAAGGATCTTTTCTGCTT 58.453 36.000 0.00 0.00 36.41 3.91
25 26 6.133253 AGTAAAGGAAGGATCTTTTCTGCT 57.867 37.500 0.00 0.00 36.41 4.24
26 27 6.879458 TGTAGTAAAGGAAGGATCTTTTCTGC 59.121 38.462 0.00 0.00 36.41 4.26
27 28 7.065204 GCTGTAGTAAAGGAAGGATCTTTTCTG 59.935 40.741 0.00 0.00 36.41 3.02
28 29 7.037945 AGCTGTAGTAAAGGAAGGATCTTTTCT 60.038 37.037 0.00 0.00 36.41 2.52
29 30 7.106890 AGCTGTAGTAAAGGAAGGATCTTTTC 58.893 38.462 0.00 0.00 36.41 2.29
30 31 7.021998 AGCTGTAGTAAAGGAAGGATCTTTT 57.978 36.000 0.00 0.00 38.32 2.27
31 32 6.628644 AGCTGTAGTAAAGGAAGGATCTTT 57.371 37.500 0.00 0.00 38.00 2.52
32 33 6.898521 AGTAGCTGTAGTAAAGGAAGGATCTT 59.101 38.462 0.00 0.00 0.00 2.40
33 34 6.322712 CAGTAGCTGTAGTAAAGGAAGGATCT 59.677 42.308 0.00 0.00 0.00 2.75
34 35 6.461788 CCAGTAGCTGTAGTAAAGGAAGGATC 60.462 46.154 0.00 0.00 0.00 3.36
35 36 5.364157 CCAGTAGCTGTAGTAAAGGAAGGAT 59.636 44.000 0.00 0.00 0.00 3.24
36 37 4.710375 CCAGTAGCTGTAGTAAAGGAAGGA 59.290 45.833 0.00 0.00 0.00 3.36
37 38 4.680975 GCCAGTAGCTGTAGTAAAGGAAGG 60.681 50.000 0.00 0.00 38.99 3.46
38 39 4.434520 GCCAGTAGCTGTAGTAAAGGAAG 58.565 47.826 0.00 0.00 38.99 3.46
39 40 3.197116 GGCCAGTAGCTGTAGTAAAGGAA 59.803 47.826 0.00 0.00 43.05 3.36
40 41 2.764572 GGCCAGTAGCTGTAGTAAAGGA 59.235 50.000 0.00 0.00 43.05 3.36
41 42 2.766828 AGGCCAGTAGCTGTAGTAAAGG 59.233 50.000 5.01 0.00 43.05 3.11
42 43 3.786635 CAGGCCAGTAGCTGTAGTAAAG 58.213 50.000 5.01 0.00 43.05 1.85
43 44 2.093658 GCAGGCCAGTAGCTGTAGTAAA 60.094 50.000 5.01 0.00 43.05 2.01
44 45 1.480954 GCAGGCCAGTAGCTGTAGTAA 59.519 52.381 5.01 0.00 43.05 2.24
45 46 1.112113 GCAGGCCAGTAGCTGTAGTA 58.888 55.000 5.01 0.00 43.05 1.82
46 47 0.616111 AGCAGGCCAGTAGCTGTAGT 60.616 55.000 5.01 0.00 43.05 2.73
47 48 2.206635 AGCAGGCCAGTAGCTGTAG 58.793 57.895 5.01 0.00 43.05 2.74
48 49 4.461119 AGCAGGCCAGTAGCTGTA 57.539 55.556 5.01 0.00 43.05 2.74
51 52 3.007920 AGCAGCAGGCCAGTAGCT 61.008 61.111 5.01 8.17 46.50 3.32
52 53 2.823147 CAGCAGCAGGCCAGTAGC 60.823 66.667 5.01 5.60 46.50 3.58
53 54 2.816601 AAGCAGCAGCAGGCCAGTAG 62.817 60.000 5.01 0.00 46.50 2.57
54 55 2.809861 GAAGCAGCAGCAGGCCAGTA 62.810 60.000 5.01 0.00 46.50 2.74
55 56 4.281527 AAGCAGCAGCAGGCCAGT 62.282 61.111 5.01 0.00 46.50 4.00
56 57 3.441290 GAAGCAGCAGCAGGCCAG 61.441 66.667 5.01 0.00 46.50 4.85
58 59 4.737177 AGGAAGCAGCAGCAGGCC 62.737 66.667 3.17 0.00 46.50 5.19
59 60 3.132801 GAGGAAGCAGCAGCAGGC 61.133 66.667 3.17 0.00 45.49 4.85
60 61 2.818714 CGAGGAAGCAGCAGCAGG 60.819 66.667 3.17 0.00 45.49 4.85
61 62 3.497932 GCGAGGAAGCAGCAGCAG 61.498 66.667 3.17 0.00 45.49 4.24
62 63 4.318949 TGCGAGGAAGCAGCAGCA 62.319 61.111 3.17 0.00 45.49 4.41
68 69 2.359107 CTGCCTTGCGAGGAAGCA 60.359 61.111 25.25 13.32 46.74 3.91
71 72 1.271325 TGATTTCTGCCTTGCGAGGAA 60.271 47.619 25.25 13.21 46.74 3.36
72 73 0.324614 TGATTTCTGCCTTGCGAGGA 59.675 50.000 25.25 8.01 46.74 3.71
73 74 0.449388 GTGATTTCTGCCTTGCGAGG 59.551 55.000 16.53 16.53 46.50 4.63
74 75 1.129998 CTGTGATTTCTGCCTTGCGAG 59.870 52.381 0.00 0.00 0.00 5.03
75 76 1.159285 CTGTGATTTCTGCCTTGCGA 58.841 50.000 0.00 0.00 0.00 5.10
76 77 1.159285 TCTGTGATTTCTGCCTTGCG 58.841 50.000 0.00 0.00 0.00 4.85
77 78 3.863142 AATCTGTGATTTCTGCCTTGC 57.137 42.857 0.00 0.00 0.00 4.01
78 79 5.159209 GTCAAATCTGTGATTTCTGCCTTG 58.841 41.667 2.92 0.00 0.00 3.61
79 80 4.219288 GGTCAAATCTGTGATTTCTGCCTT 59.781 41.667 2.92 0.00 0.00 4.35
80 81 3.760684 GGTCAAATCTGTGATTTCTGCCT 59.239 43.478 2.92 0.00 0.00 4.75
209 211 1.753463 CGACGCCTAAGGGAGAGGT 60.753 63.158 0.00 0.00 36.37 3.85
489 492 5.427857 TTACCTAGTAGGATGGATTGGGA 57.572 43.478 23.50 0.00 37.67 4.37
1037 1044 2.980233 GCATCATGTAGGCCCGGC 60.980 66.667 0.00 0.00 0.00 6.13
1407 1414 0.962489 CCTCCCGTCGATAGCAAGAT 59.038 55.000 0.00 0.00 0.00 2.40
1864 1873 4.248058 CGCATCATCCAGCTACATATGAA 58.752 43.478 10.38 0.00 32.47 2.57
2133 2142 7.562821 GGACTAAAGTAATGACCTCCTTACCTA 59.437 40.741 0.00 0.00 0.00 3.08
2339 2348 1.000274 GCAAATGAAACTCAACCGCCT 60.000 47.619 0.00 0.00 0.00 5.52
2367 2376 4.330944 AAGACCAAACTGACGATACACA 57.669 40.909 0.00 0.00 0.00 3.72
2526 2535 3.973206 TTATCTTCCGTTGCCTTCTCA 57.027 42.857 0.00 0.00 0.00 3.27
2669 2678 6.154706 ACTCGAGTAGTTCCAATAAACCATCT 59.845 38.462 18.46 0.00 33.35 2.90
2735 2744 4.286291 AGATCCTCAAAGTTTACGGGTTCT 59.714 41.667 0.00 0.00 0.00 3.01
2930 2939 1.556451 TGGCTCTCATCAGCTGCTTTA 59.444 47.619 9.47 0.00 39.58 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.