Multiple sequence alignment - TraesCS3B01G178600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G178600
chr3B
100.000
4073
0
0
1
4073
183081463
183085535
0.000000e+00
7522.0
1
TraesCS3B01G178600
chr3B
80.000
755
132
17
1897
2643
410774942
410774199
1.290000e-149
540.0
2
TraesCS3B01G178600
chr3B
77.455
275
54
7
2713
2983
410774098
410773828
1.520000e-34
158.0
3
TraesCS3B01G178600
chr3A
91.127
2750
129
48
698
3377
140807904
140805200
0.000000e+00
3620.0
4
TraesCS3B01G178600
chr3A
90.015
681
43
10
4
669
140808573
140807903
0.000000e+00
857.0
5
TraesCS3B01G178600
chr3A
79.665
777
141
16
1874
2643
421720843
421720077
9.960000e-151
544.0
6
TraesCS3B01G178600
chr3A
78.182
275
52
7
2713
2983
421719960
421719690
7.000000e-38
169.0
7
TraesCS3B01G178600
chr3A
88.889
135
11
4
3510
3643
140805109
140804978
3.260000e-36
163.0
8
TraesCS3B01G178600
chr3D
92.669
2469
90
23
921
3336
129024198
129026628
0.000000e+00
3472.0
9
TraesCS3B01G178600
chr3D
90.215
930
61
19
1
912
129023233
129024150
0.000000e+00
1186.0
10
TraesCS3B01G178600
chr3D
91.160
543
40
5
3533
4073
129027004
129027540
0.000000e+00
730.0
11
TraesCS3B01G178600
chr3D
79.896
766
135
17
1874
2631
310683039
310683793
9.960000e-151
544.0
12
TraesCS3B01G178600
chr3D
78.824
255
50
4
2713
2965
310684034
310684286
7.000000e-38
169.0
13
TraesCS3B01G178600
chr3D
97.500
40
1
0
3512
3551
129026950
129026989
7.310000e-08
69.4
14
TraesCS3B01G178600
chr1D
81.830
776
135
6
1867
2639
137968331
137967559
0.000000e+00
647.0
15
TraesCS3B01G178600
chr1A
81.306
781
134
10
1867
2641
154700612
154701386
1.240000e-174
623.0
16
TraesCS3B01G178600
chr1B
81.057
776
141
6
1867
2639
212410383
212409611
7.480000e-172
614.0
17
TraesCS3B01G178600
chr5D
79.135
393
41
19
2903
3284
359584081
359584443
2.450000e-57
233.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G178600
chr3B
183081463
183085535
4072
False
7522.000000
7522
100.000000
1
4073
1
chr3B.!!$F1
4072
1
TraesCS3B01G178600
chr3B
410773828
410774942
1114
True
349.000000
540
78.727500
1897
2983
2
chr3B.!!$R1
1086
2
TraesCS3B01G178600
chr3A
140804978
140808573
3595
True
1546.666667
3620
90.010333
4
3643
3
chr3A.!!$R1
3639
3
TraesCS3B01G178600
chr3A
421719690
421720843
1153
True
356.500000
544
78.923500
1874
2983
2
chr3A.!!$R2
1109
4
TraesCS3B01G178600
chr3D
129023233
129027540
4307
False
1364.350000
3472
92.886000
1
4073
4
chr3D.!!$F1
4072
5
TraesCS3B01G178600
chr3D
310683039
310684286
1247
False
356.500000
544
79.360000
1874
2965
2
chr3D.!!$F2
1091
6
TraesCS3B01G178600
chr1D
137967559
137968331
772
True
647.000000
647
81.830000
1867
2639
1
chr1D.!!$R1
772
7
TraesCS3B01G178600
chr1A
154700612
154701386
774
False
623.000000
623
81.306000
1867
2641
1
chr1A.!!$F1
774
8
TraesCS3B01G178600
chr1B
212409611
212410383
772
True
614.000000
614
81.057000
1867
2639
1
chr1B.!!$R1
772
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
523
536
0.239082
TGCTACACGTACTGTCACCG
59.761
55.000
0.00
0.0
33.91
4.94
F
627
648
0.250901
AATTCCTGAGCGCCACAAGT
60.251
50.000
2.29
0.0
0.00
3.16
F
834
863
1.414181
CCCTATGTGGTTCAGCGAGAT
59.586
52.381
0.00
0.0
0.00
2.75
F
1419
1519
1.444553
GAGCACGTCGAGAAGGTGG
60.445
63.158
0.00
0.0
42.68
4.61
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2141
2247
0.242825
AGAAGTTGACGCGAATCGGA
59.757
50.000
15.93
0.00
43.86
4.55
R
2147
2253
1.405461
CGAAGAAGAAGTTGACGCGA
58.595
50.000
15.93
0.00
0.00
5.87
R
2659
2768
2.120232
CGGTTATCACAGCGATCAGTC
58.880
52.381
0.00
0.00
40.13
3.51
R
3413
3932
0.108992
TTGTACGCTCACGGTGATCC
60.109
55.000
11.86
5.17
46.04
3.36
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
90
94
3.372822
GTCCGAAATCCGAATTTGTGCTA
59.627
43.478
0.00
0.00
41.76
3.49
139
144
3.549794
CCCCCTGACAGAGAAAATGATC
58.450
50.000
3.32
0.00
0.00
2.92
150
155
2.044908
AGAAAATGATCCAAGGCCCCTT
59.955
45.455
0.00
0.00
36.60
3.95
280
286
0.386478
GCTTTGCCGAGTTGAAGCTG
60.386
55.000
0.00
0.00
40.87
4.24
308
320
0.972134
TGCTGAGGTCTGAGGTGAAG
59.028
55.000
0.00
0.00
0.00
3.02
350
362
2.885676
CGTCGCATATGCCCTGCAC
61.886
63.158
21.77
9.63
43.04
4.57
456
469
7.273320
CAATCTTTGCCTGAAGATCATATGT
57.727
36.000
1.90
0.00
43.66
2.29
469
482
9.987272
TGAAGATCATATGTATTTCCTACAGTG
57.013
33.333
1.90
0.00
43.44
3.66
472
485
7.514127
AGATCATATGTATTTCCTACAGTGGGT
59.486
37.037
2.32
0.00
43.44
4.51
484
497
1.490490
ACAGTGGGTGTGTCTGAATGT
59.510
47.619
0.00
0.00
38.28
2.71
486
499
2.549754
CAGTGGGTGTGTCTGAATGTTC
59.450
50.000
0.00
0.00
0.00
3.18
490
503
4.097892
GTGGGTGTGTCTGAATGTTCTTTT
59.902
41.667
0.00
0.00
0.00
2.27
495
508
6.638468
GGTGTGTCTGAATGTTCTTTTCATTC
59.362
38.462
10.48
10.48
46.33
2.67
507
520
2.014010
TTTCATTCCCCTGCTTTGCT
57.986
45.000
0.00
0.00
0.00
3.91
521
534
2.155155
GCTTTGCTACACGTACTGTCAC
59.845
50.000
0.00
0.00
33.91
3.67
522
535
2.427232
TTGCTACACGTACTGTCACC
57.573
50.000
0.00
0.00
33.91
4.02
523
536
0.239082
TGCTACACGTACTGTCACCG
59.761
55.000
0.00
0.00
33.91
4.94
524
537
0.455633
GCTACACGTACTGTCACCGG
60.456
60.000
0.00
0.00
33.91
5.28
529
550
4.065281
GTACTGTCACCGGCGCCT
62.065
66.667
26.68
2.78
0.00
5.52
606
627
1.227556
ATTGCCATACTCGTCGGCC
60.228
57.895
0.00
0.00
45.63
6.13
610
631
0.814010
GCCATACTCGTCGGCCAAAT
60.814
55.000
2.24
0.00
40.07
2.32
627
648
0.250901
AATTCCTGAGCGCCACAAGT
60.251
50.000
2.29
0.00
0.00
3.16
631
652
3.245948
CTGAGCGCCACAAGTGTGC
62.246
63.158
2.29
4.23
44.34
4.57
633
654
3.527360
GAGCGCCACAAGTGTGCAC
62.527
63.158
10.75
10.75
44.34
4.57
695
716
6.183360
ACGAAATATATACATACGGCCATCGA
60.183
38.462
2.24
0.00
42.43
3.59
764
793
3.857038
AGTCCGGCACCAACACGT
61.857
61.111
0.00
0.00
0.00
4.49
780
809
4.545823
ACACGTCGTGATCATTTTGTTT
57.454
36.364
30.95
1.50
36.96
2.83
794
823
3.441496
TTTGTTTTGAAGCTGGCAGAG
57.559
42.857
20.86
0.00
0.00
3.35
804
833
2.983229
AGCTGGCAGAGACTTGTTATG
58.017
47.619
20.86
0.00
0.00
1.90
805
834
2.304180
AGCTGGCAGAGACTTGTTATGT
59.696
45.455
20.86
0.00
0.00
2.29
806
835
3.077359
GCTGGCAGAGACTTGTTATGTT
58.923
45.455
20.86
0.00
0.00
2.71
807
836
4.020218
AGCTGGCAGAGACTTGTTATGTTA
60.020
41.667
20.86
0.00
0.00
2.41
808
837
4.878397
GCTGGCAGAGACTTGTTATGTTAT
59.122
41.667
20.86
0.00
0.00
1.89
834
863
1.414181
CCCTATGTGGTTCAGCGAGAT
59.586
52.381
0.00
0.00
0.00
2.75
843
872
4.172512
CAGCGAGATGGGCAGGCT
62.173
66.667
0.00
0.00
0.00
4.58
913
950
3.823873
ACCGAGCTACTGAGGATTGATAG
59.176
47.826
0.00
0.00
0.00
2.08
1359
1459
3.076296
GACGAGTCGCACATGCTGC
62.076
63.158
13.59
9.41
43.21
5.25
1392
1492
4.429212
CGTCGCCGATGGTGTCCA
62.429
66.667
0.00
0.00
38.19
4.02
1419
1519
1.444553
GAGCACGTCGAGAAGGTGG
60.445
63.158
0.00
0.00
42.68
4.61
1491
1591
2.203998
ACTCCCAGTCCCAGGTGG
60.204
66.667
0.00
0.00
0.00
4.61
1569
1669
3.588336
GGGACACGAGCTACGACT
58.412
61.111
11.64
0.00
45.77
4.18
1757
1863
1.888018
CCCCGAACTCGACAAGCTA
59.112
57.895
0.00
0.00
43.02
3.32
2141
2247
2.496291
GCGGCGGGAGTACTACCAT
61.496
63.158
24.29
0.00
31.13
3.55
2147
2253
2.236766
CGGGAGTACTACCATCCGATT
58.763
52.381
24.29
0.00
39.83
3.34
2221
2330
4.489771
GCCGGAGATGGTGGTGGG
62.490
72.222
5.05
0.00
0.00
4.61
2228
2337
3.017581
ATGGTGGTGGGGAGCCTC
61.018
66.667
0.00
0.00
0.00
4.70
2300
2409
4.412843
TCAAGATATACGGGCAGTGGATA
58.587
43.478
0.00
0.00
0.00
2.59
2402
2511
2.399607
GGGGGCCATCATGGGGTTA
61.400
63.158
5.62
0.00
38.19
2.85
2486
2595
3.390521
TACCAGAGGCTGCCCACG
61.391
66.667
16.57
3.26
0.00
4.94
2659
2768
1.663445
GGTAAGCACCTCGATCGATCG
60.663
57.143
35.91
35.91
42.48
3.69
3030
3301
4.368808
CACGGCAACAAGGACGCG
62.369
66.667
3.53
3.53
0.00
6.01
3081
3352
0.178987
ATAGACCCTGATCGACGCCT
60.179
55.000
0.00
0.00
0.00
5.52
3083
3354
0.178987
AGACCCTGATCGACGCCTAT
60.179
55.000
0.00
0.00
0.00
2.57
3084
3355
1.073444
AGACCCTGATCGACGCCTATA
59.927
52.381
0.00
0.00
0.00
1.31
3085
3356
1.469308
GACCCTGATCGACGCCTATAG
59.531
57.143
0.00
0.00
0.00
1.31
3086
3357
1.073444
ACCCTGATCGACGCCTATAGA
59.927
52.381
0.00
0.00
0.00
1.98
3087
3358
1.469308
CCCTGATCGACGCCTATAGAC
59.531
57.143
0.00
0.00
0.00
2.59
3088
3359
1.469308
CCTGATCGACGCCTATAGACC
59.531
57.143
0.00
0.00
0.00
3.85
3089
3360
1.469308
CTGATCGACGCCTATAGACCC
59.531
57.143
0.00
0.00
0.00
4.46
3090
3361
1.073444
TGATCGACGCCTATAGACCCT
59.927
52.381
0.00
0.00
0.00
4.34
3091
3362
1.469308
GATCGACGCCTATAGACCCTG
59.531
57.143
0.00
0.00
0.00
4.45
3092
3363
0.471191
TCGACGCCTATAGACCCTGA
59.529
55.000
0.00
0.00
0.00
3.86
3093
3364
1.073444
TCGACGCCTATAGACCCTGAT
59.927
52.381
0.00
0.00
0.00
2.90
3094
3365
1.469308
CGACGCCTATAGACCCTGATC
59.531
57.143
0.00
0.00
0.00
2.92
3095
3366
1.469308
GACGCCTATAGACCCTGATCG
59.531
57.143
0.00
0.00
0.00
3.69
3096
3367
1.073444
ACGCCTATAGACCCTGATCGA
59.927
52.381
0.00
0.00
0.00
3.59
3097
3368
1.469308
CGCCTATAGACCCTGATCGAC
59.531
57.143
0.00
0.00
0.00
4.20
3098
3369
1.469308
GCCTATAGACCCTGATCGACG
59.531
57.143
0.00
0.00
0.00
5.12
3099
3370
1.469308
CCTATAGACCCTGATCGACGC
59.531
57.143
0.00
0.00
0.00
5.19
3100
3371
1.469308
CTATAGACCCTGATCGACGCC
59.531
57.143
0.00
0.00
0.00
5.68
3135
3412
1.180029
GCCTTCTTCATGCATGTGGT
58.820
50.000
25.43
0.00
0.00
4.16
3144
3421
2.063266
CATGCATGTGGTGAAGCAAAC
58.937
47.619
18.91
0.00
40.76
2.93
3145
3422
1.109609
TGCATGTGGTGAAGCAAACA
58.890
45.000
0.00
0.00
33.48
2.83
3146
3423
1.202394
TGCATGTGGTGAAGCAAACAC
60.202
47.619
0.00
0.00
37.51
3.32
3147
3424
1.067516
GCATGTGGTGAAGCAAACACT
59.932
47.619
0.00
0.00
38.20
3.55
3337
3616
3.047877
GCGTGGTGGTGTGTAGGC
61.048
66.667
0.00
0.00
0.00
3.93
3357
3874
2.860735
GCAGGACTTAGATGCTGTTACG
59.139
50.000
5.60
0.00
40.02
3.18
3361
3878
6.273825
CAGGACTTAGATGCTGTTACGTATT
58.726
40.000
0.00
0.00
33.62
1.89
3362
3879
7.423199
CAGGACTTAGATGCTGTTACGTATTA
58.577
38.462
0.00
0.00
33.62
0.98
3363
3880
8.082852
CAGGACTTAGATGCTGTTACGTATTAT
58.917
37.037
0.00
0.00
33.62
1.28
3364
3881
8.082852
AGGACTTAGATGCTGTTACGTATTATG
58.917
37.037
0.00
0.00
0.00
1.90
3386
3905
4.081365
TGGCTTAACCGTGAGATGTGATAA
60.081
41.667
0.00
0.00
43.94
1.75
3387
3906
4.873827
GGCTTAACCGTGAGATGTGATAAA
59.126
41.667
0.00
0.00
0.00
1.40
3388
3907
5.527582
GGCTTAACCGTGAGATGTGATAAAT
59.472
40.000
0.00
0.00
0.00
1.40
3390
3909
6.292919
GCTTAACCGTGAGATGTGATAAATCC
60.293
42.308
0.00
0.00
0.00
3.01
3391
3910
3.717707
ACCGTGAGATGTGATAAATCCG
58.282
45.455
0.00
0.00
0.00
4.18
3392
3911
3.132289
ACCGTGAGATGTGATAAATCCGT
59.868
43.478
0.00
0.00
0.00
4.69
3393
3912
3.736252
CCGTGAGATGTGATAAATCCGTC
59.264
47.826
0.00
0.00
0.00
4.79
3394
3913
4.499865
CCGTGAGATGTGATAAATCCGTCT
60.500
45.833
4.03
4.03
0.00
4.18
3395
3914
4.677378
CGTGAGATGTGATAAATCCGTCTC
59.323
45.833
16.11
16.11
38.80
3.36
3396
3915
5.506483
CGTGAGATGTGATAAATCCGTCTCT
60.506
44.000
19.89
6.66
38.94
3.10
3397
3916
5.689514
GTGAGATGTGATAAATCCGTCTCTG
59.310
44.000
19.89
0.00
38.94
3.35
3398
3917
5.360999
TGAGATGTGATAAATCCGTCTCTGT
59.639
40.000
19.89
0.05
38.94
3.41
3399
3918
6.546034
TGAGATGTGATAAATCCGTCTCTGTA
59.454
38.462
19.89
7.75
38.94
2.74
3400
3919
7.231519
TGAGATGTGATAAATCCGTCTCTGTAT
59.768
37.037
19.89
0.00
38.94
2.29
3401
3920
7.374272
AGATGTGATAAATCCGTCTCTGTATG
58.626
38.462
0.00
0.00
0.00
2.39
3402
3921
6.465439
TGTGATAAATCCGTCTCTGTATGT
57.535
37.500
0.00
0.00
0.00
2.29
3403
3922
6.273071
TGTGATAAATCCGTCTCTGTATGTG
58.727
40.000
0.00
0.00
0.00
3.21
3404
3923
5.692204
GTGATAAATCCGTCTCTGTATGTGG
59.308
44.000
0.00
0.00
0.00
4.17
3405
3924
5.362717
TGATAAATCCGTCTCTGTATGTGGT
59.637
40.000
0.00
0.00
0.00
4.16
3406
3925
6.548251
TGATAAATCCGTCTCTGTATGTGGTA
59.452
38.462
0.00
0.00
0.00
3.25
3407
3926
4.650754
AATCCGTCTCTGTATGTGGTAC
57.349
45.455
0.00
0.00
0.00
3.34
3408
3927
3.076079
TCCGTCTCTGTATGTGGTACA
57.924
47.619
0.00
0.00
40.93
2.90
3409
3928
3.628008
TCCGTCTCTGTATGTGGTACAT
58.372
45.455
0.00
0.00
44.52
2.29
3410
3929
4.021229
TCCGTCTCTGTATGTGGTACATT
58.979
43.478
0.00
0.00
44.52
2.71
3411
3930
5.195185
TCCGTCTCTGTATGTGGTACATTA
58.805
41.667
0.00
0.00
44.52
1.90
3412
3931
5.066893
TCCGTCTCTGTATGTGGTACATTAC
59.933
44.000
0.00
0.00
44.52
1.89
3413
3932
4.968181
CGTCTCTGTATGTGGTACATTACG
59.032
45.833
0.00
0.00
44.52
3.18
3414
3933
5.279384
GTCTCTGTATGTGGTACATTACGG
58.721
45.833
0.00
2.96
44.52
4.02
3415
3934
5.066893
GTCTCTGTATGTGGTACATTACGGA
59.933
44.000
0.00
6.41
44.52
4.69
3416
3935
5.831525
TCTCTGTATGTGGTACATTACGGAT
59.168
40.000
0.00
0.00
44.52
4.18
3417
3936
6.016527
TCTCTGTATGTGGTACATTACGGATC
60.017
42.308
0.00
0.00
44.52
3.36
3418
3937
5.595133
TCTGTATGTGGTACATTACGGATCA
59.405
40.000
0.00
0.00
44.52
2.92
3419
3938
5.593968
TGTATGTGGTACATTACGGATCAC
58.406
41.667
0.00
0.00
44.52
3.06
3420
3939
3.530265
TGTGGTACATTACGGATCACC
57.470
47.619
0.00
0.00
44.52
4.02
3443
3962
3.244579
GTGAGCGTACAATAAATCCGTCC
59.755
47.826
0.00
0.00
0.00
4.79
3448
3967
2.032680
ACAATAAATCCGTCCCCGTG
57.967
50.000
0.00
0.00
0.00
4.94
3462
3987
1.352114
CCCGTGTGTGGTACATTACG
58.648
55.000
11.92
11.92
44.52
3.18
3465
3990
2.883574
CGTGTGTGGTACATTACGGAT
58.116
47.619
11.35
0.00
44.52
4.18
3489
4014
1.608336
TGGAAGATCGTGACCGGGT
60.608
57.895
6.32
0.00
33.95
5.28
3492
4017
2.501223
GAAGATCGTGACCGGGTGCA
62.501
60.000
3.30
0.00
33.95
4.57
3493
4018
2.507110
AAGATCGTGACCGGGTGCAG
62.507
60.000
3.30
0.00
33.95
4.41
3494
4019
3.296709
GATCGTGACCGGGTGCAGT
62.297
63.158
3.30
0.00
33.95
4.40
3495
4020
1.940883
GATCGTGACCGGGTGCAGTA
61.941
60.000
3.30
0.00
33.95
2.74
3496
4021
1.327690
ATCGTGACCGGGTGCAGTAT
61.328
55.000
3.30
0.00
33.95
2.12
3497
4022
1.079405
CGTGACCGGGTGCAGTATT
60.079
57.895
3.30
0.00
0.00
1.89
3498
4023
1.082117
CGTGACCGGGTGCAGTATTC
61.082
60.000
3.30
0.00
0.00
1.75
3499
4024
1.082117
GTGACCGGGTGCAGTATTCG
61.082
60.000
3.30
0.00
0.00
3.34
3500
4025
2.125269
ACCGGGTGCAGTATTCGC
60.125
61.111
6.32
0.00
0.00
4.70
3501
4026
2.186903
CCGGGTGCAGTATTCGCT
59.813
61.111
0.00
0.00
0.00
4.93
3502
4027
1.883084
CCGGGTGCAGTATTCGCTC
60.883
63.158
0.00
0.00
0.00
5.03
3503
4028
1.153647
CGGGTGCAGTATTCGCTCA
60.154
57.895
0.00
0.00
0.00
4.26
3504
4029
0.530650
CGGGTGCAGTATTCGCTCAT
60.531
55.000
0.00
0.00
0.00
2.90
3505
4030
1.221414
GGGTGCAGTATTCGCTCATC
58.779
55.000
0.00
0.00
0.00
2.92
3506
4031
1.221414
GGTGCAGTATTCGCTCATCC
58.779
55.000
0.00
0.00
0.00
3.51
3507
4032
0.855349
GTGCAGTATTCGCTCATCCG
59.145
55.000
0.00
0.00
0.00
4.18
3508
4033
0.249447
TGCAGTATTCGCTCATCCGG
60.249
55.000
0.00
0.00
0.00
5.14
3509
4034
0.249489
GCAGTATTCGCTCATCCGGT
60.249
55.000
0.00
0.00
0.00
5.28
3510
4035
1.772182
CAGTATTCGCTCATCCGGTC
58.228
55.000
0.00
0.00
0.00
4.79
3516
4041
3.148279
GCTCATCCGGTCGTCCCT
61.148
66.667
0.00
0.00
0.00
4.20
3561
4119
3.253230
CGAAGCATGTCAGTATGTCACA
58.747
45.455
0.00
0.00
36.88
3.58
3582
4140
0.392595
CCACCTTTTCCCCTACGAGC
60.393
60.000
0.00
0.00
0.00
5.03
3595
4153
5.820947
TCCCCTACGAGCTATTGAAAATTTC
59.179
40.000
0.00
0.00
0.00
2.17
3601
4159
6.624423
ACGAGCTATTGAAAATTTCAGCAAT
58.376
32.000
16.93
14.38
41.38
3.56
3707
4265
6.994221
AGTAGTCATGCAATAGGGTACATAC
58.006
40.000
0.00
0.00
0.00
2.39
3733
4291
7.054751
CAGATGAACATCATATGGGCATCTAT
58.945
38.462
18.21
4.56
45.22
1.98
3756
4315
4.080243
TGGATAAAAATAGAGACCGGGCAA
60.080
41.667
11.69
0.00
0.00
4.52
3757
4316
4.885325
GGATAAAAATAGAGACCGGGCAAA
59.115
41.667
11.69
0.00
0.00
3.68
3772
4331
0.109735
GCAAAGTGCCTAACCGAAGC
60.110
55.000
0.00
0.00
37.42
3.86
3776
4335
2.125673
TGCCTAACCGAAGCGAGC
60.126
61.111
0.00
0.00
0.00
5.03
3778
4337
2.167861
GCCTAACCGAAGCGAGCAG
61.168
63.158
0.00
0.00
0.00
4.24
3786
4345
1.354040
CGAAGCGAGCAGAAGACATT
58.646
50.000
0.00
0.00
0.00
2.71
3789
4348
2.462456
AGCGAGCAGAAGACATTCAA
57.538
45.000
0.00
0.00
37.94
2.69
3795
4354
1.796617
GCAGAAGACATTCAATGCGGC
60.797
52.381
0.00
0.00
37.94
6.53
3811
4370
0.097674
CGGCGAAAGAAGATGCAAGG
59.902
55.000
0.00
0.00
0.00
3.61
3817
4376
3.004734
CGAAAGAAGATGCAAGGGTTGTT
59.995
43.478
0.00
0.00
0.00
2.83
3820
4379
4.640771
AGAAGATGCAAGGGTTGTTCTA
57.359
40.909
0.00
0.00
0.00
2.10
3856
4415
0.579630
TGCGTTGTTCGTCATGTCAC
59.420
50.000
0.00
0.00
42.13
3.67
3858
4417
1.125270
CGTTGTTCGTCATGTCACGA
58.875
50.000
5.60
5.60
46.91
4.35
3873
4432
5.400066
TGTCACGAAAGAGGTGATCAATA
57.600
39.130
0.00
0.00
45.29
1.90
3934
4493
7.015098
AGGAAGATCCTCTGTACATGATTACAG
59.985
40.741
14.44
14.44
45.66
2.74
3941
4501
5.773091
TCTGTACATGATTACAGGGACCTA
58.227
41.667
18.43
1.62
46.21
3.08
3946
4506
6.388619
ACATGATTACAGGGACCTAGTTTT
57.611
37.500
0.00
0.00
31.68
2.43
3957
4517
4.700692
GGGACCTAGTTTTGAAGGATTGAC
59.299
45.833
0.00
0.00
0.00
3.18
3963
4523
2.552315
GTTTTGAAGGATTGACGCCTCA
59.448
45.455
0.00
0.00
33.76
3.86
3964
4524
1.808411
TTGAAGGATTGACGCCTCAC
58.192
50.000
0.00
0.00
33.76
3.51
3965
4525
0.976641
TGAAGGATTGACGCCTCACT
59.023
50.000
0.00
0.00
33.76
3.41
3966
4526
1.347707
TGAAGGATTGACGCCTCACTT
59.652
47.619
0.00
0.00
33.76
3.16
3967
4527
2.003301
GAAGGATTGACGCCTCACTTC
58.997
52.381
0.00
0.00
33.76
3.01
3968
4528
1.270907
AGGATTGACGCCTCACTTCT
58.729
50.000
0.00
0.00
0.00
2.85
3969
4529
1.625818
AGGATTGACGCCTCACTTCTT
59.374
47.619
0.00
0.00
0.00
2.52
3970
4530
1.734465
GGATTGACGCCTCACTTCTTG
59.266
52.381
0.00
0.00
0.00
3.02
4002
4562
2.894126
AGACACACTGGAGATTCTCGTT
59.106
45.455
7.57
0.00
0.00
3.85
4045
4605
9.624373
CTCTTATAGGTGTGTTTACTAGTAGGA
57.376
37.037
2.23
0.00
0.00
2.94
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
48
52
6.373216
TCGGACGGATCATTACAATTTTCTTT
59.627
34.615
0.00
0.00
0.00
2.52
90
94
5.780793
AGTCTAATCACTGTCTACCCAAAGT
59.219
40.000
0.00
0.00
0.00
2.66
139
144
0.186143
GGGATAGAAAGGGGCCTTGG
59.814
60.000
0.84
0.00
36.26
3.61
150
155
2.110899
TGCCAAAACCCTTGGGATAGAA
59.889
45.455
13.39
0.00
39.90
2.10
280
286
5.055812
CCTCAGACCTCAGCAATAGAAATC
58.944
45.833
0.00
0.00
0.00
2.17
308
320
6.035112
CGAAGTCTGAATTTTCTAGTACCAGC
59.965
42.308
0.00
0.00
0.00
4.85
350
362
2.224549
TGTAAGAAACGGTGCCAATTCG
59.775
45.455
0.00
0.00
0.00
3.34
385
397
2.885266
TCAGTAGGATGTAGGCACGATC
59.115
50.000
0.00
0.00
0.00
3.69
388
401
3.643763
GATTCAGTAGGATGTAGGCACG
58.356
50.000
0.00
0.00
0.00
5.34
389
402
3.643763
CGATTCAGTAGGATGTAGGCAC
58.356
50.000
0.00
0.00
0.00
5.01
455
468
4.020485
AGACACACCCACTGTAGGAAATAC
60.020
45.833
0.00
0.00
34.72
1.89
456
469
4.020573
CAGACACACCCACTGTAGGAAATA
60.021
45.833
0.00
0.00
0.00
1.40
469
482
4.338118
TGAAAAGAACATTCAGACACACCC
59.662
41.667
0.00
0.00
33.15
4.61
484
497
3.244181
GCAAAGCAGGGGAATGAAAAGAA
60.244
43.478
0.00
0.00
0.00
2.52
486
499
2.301009
AGCAAAGCAGGGGAATGAAAAG
59.699
45.455
0.00
0.00
0.00
2.27
490
503
1.354031
TGTAGCAAAGCAGGGGAATGA
59.646
47.619
0.00
0.00
0.00
2.57
495
508
0.036765
TACGTGTAGCAAAGCAGGGG
60.037
55.000
0.00
0.00
0.00
4.79
507
520
1.580942
GCCGGTGACAGTACGTGTA
59.419
57.895
1.90
0.00
40.56
2.90
529
550
1.488705
CCTGGTCTGCTGGTAACCCA
61.489
60.000
0.00
0.00
38.87
4.51
606
627
0.597568
TTGTGGCGCTCAGGAATTTG
59.402
50.000
7.64
0.00
0.00
2.32
610
631
1.597854
CACTTGTGGCGCTCAGGAA
60.598
57.895
17.87
6.29
0.00
3.36
627
648
3.005684
GTCAAAGGAAATGGATGTGCACA
59.994
43.478
24.08
24.08
0.00
4.57
631
652
5.909621
AGATGTCAAAGGAAATGGATGTG
57.090
39.130
0.00
0.00
0.00
3.21
633
654
5.107133
GCAAGATGTCAAAGGAAATGGATG
58.893
41.667
0.00
0.00
0.00
3.51
695
716
0.870307
GCAACTCGACGCCGATGTAT
60.870
55.000
0.00
0.00
44.62
2.29
764
793
5.686841
CAGCTTCAAAACAAAATGATCACGA
59.313
36.000
0.00
0.00
0.00
4.35
780
809
1.141657
ACAAGTCTCTGCCAGCTTCAA
59.858
47.619
0.00
0.00
0.00
2.69
804
833
7.705325
CGCTGAACCACATAGGGTATATATAAC
59.295
40.741
0.00
0.00
37.53
1.89
805
834
7.616542
TCGCTGAACCACATAGGGTATATATAA
59.383
37.037
0.00
0.00
37.53
0.98
806
835
7.120716
TCGCTGAACCACATAGGGTATATATA
58.879
38.462
0.00
0.00
37.53
0.86
807
836
5.955959
TCGCTGAACCACATAGGGTATATAT
59.044
40.000
0.00
0.00
37.53
0.86
808
837
5.326900
TCGCTGAACCACATAGGGTATATA
58.673
41.667
0.00
0.00
37.53
0.86
843
872
1.747325
GAAGCCAAAACCAGCTGCCA
61.747
55.000
8.66
0.00
39.87
4.92
913
950
1.004595
GAACCACCGATTCCTTACGC
58.995
55.000
0.00
0.00
0.00
4.42
1107
1198
0.804364
TCAAGTCGGCATTGCATGAC
59.196
50.000
19.72
19.72
36.29
3.06
1406
1506
0.666577
GGAACACCACCTTCTCGACG
60.667
60.000
0.00
0.00
0.00
5.12
1407
1507
0.666577
CGGAACACCACCTTCTCGAC
60.667
60.000
0.00
0.00
0.00
4.20
1413
1513
2.030562
CGAGCGGAACACCACCTT
59.969
61.111
0.00
0.00
0.00
3.50
1450
1550
2.651361
CGTTGGACAGCTCGGAGT
59.349
61.111
6.90
0.00
0.00
3.85
1461
1561
3.319198
GGAGTCCTGGGCGTTGGA
61.319
66.667
0.41
0.00
0.00
3.53
1464
1564
3.322466
CTGGGAGTCCTGGGCGTT
61.322
66.667
9.58
0.00
0.00
4.84
1491
1591
1.128724
CTCATCGAGTCGTCGTGCAC
61.129
60.000
13.12
6.82
46.85
4.57
1550
1650
3.807538
TCGTAGCTCGTGTCCCGC
61.808
66.667
0.00
0.00
40.80
6.13
1551
1651
2.099831
GTCGTAGCTCGTGTCCCG
59.900
66.667
0.00
0.00
40.80
5.14
1757
1863
2.500714
TTGCTCGTGGTGTACCCGT
61.501
57.895
10.31
0.00
35.15
5.28
2141
2247
0.242825
AGAAGTTGACGCGAATCGGA
59.757
50.000
15.93
0.00
43.86
4.55
2147
2253
1.405461
CGAAGAAGAAGTTGACGCGA
58.595
50.000
15.93
0.00
0.00
5.87
2228
2337
3.390521
TACCAGAGCCAGTGCGGG
61.391
66.667
0.00
0.00
44.33
6.13
2659
2768
2.120232
CGGTTATCACAGCGATCAGTC
58.880
52.381
0.00
0.00
40.13
3.51
2666
2775
2.120232
GATCAGTCGGTTATCACAGCG
58.880
52.381
0.00
0.00
39.05
5.18
2667
2776
2.120232
CGATCAGTCGGTTATCACAGC
58.880
52.381
0.00
0.00
44.00
4.40
2725
2993
2.162681
GAACCCCCTGAACATGTTGAG
58.837
52.381
17.58
17.33
0.00
3.02
3030
3301
0.179108
GGTCTCTGTATGCGGTGTCC
60.179
60.000
0.00
0.00
0.00
4.02
3041
3312
2.995872
GCGGCTTCGAGGTCTCTGT
61.996
63.158
0.00
0.00
35.61
3.41
3081
3352
1.531423
GGCGTCGATCAGGGTCTATA
58.469
55.000
0.00
0.00
0.00
1.31
3083
3354
2.184830
CGGCGTCGATCAGGGTCTA
61.185
63.158
1.44
0.00
39.00
2.59
3084
3355
3.518998
CGGCGTCGATCAGGGTCT
61.519
66.667
1.44
0.00
39.00
3.85
3085
3356
3.515286
TCGGCGTCGATCAGGGTC
61.515
66.667
8.66
0.00
40.88
4.46
3093
3364
1.792301
CTAGTTCAGTCGGCGTCGA
59.208
57.895
8.66
8.66
43.86
4.20
3094
3365
1.868251
GCTAGTTCAGTCGGCGTCG
60.868
63.158
1.15
1.15
37.82
5.12
3095
3366
1.868251
CGCTAGTTCAGTCGGCGTC
60.868
63.158
6.85
0.00
40.78
5.19
3096
3367
2.178521
CGCTAGTTCAGTCGGCGT
59.821
61.111
6.85
0.00
40.78
5.68
3097
3368
1.868251
GTCGCTAGTTCAGTCGGCG
60.868
63.158
0.00
0.00
45.93
6.46
3098
3369
1.868251
CGTCGCTAGTTCAGTCGGC
60.868
63.158
0.00
0.00
0.00
5.54
3099
3370
1.868251
GCGTCGCTAGTTCAGTCGG
60.868
63.158
10.68
0.00
0.00
4.79
3100
3371
1.868251
GGCGTCGCTAGTTCAGTCG
60.868
63.158
18.11
0.00
0.00
4.18
3135
3412
1.679139
CCACCAGAGTGTTTGCTTCA
58.321
50.000
0.00
0.00
42.88
3.02
3144
3421
2.047844
CCAGTCGCCACCAGAGTG
60.048
66.667
0.00
0.00
44.12
3.51
3145
3422
2.524394
ACCAGTCGCCACCAGAGT
60.524
61.111
0.00
0.00
0.00
3.24
3146
3423
2.262915
GACCAGTCGCCACCAGAG
59.737
66.667
0.00
0.00
0.00
3.35
3147
3424
3.680786
CGACCAGTCGCCACCAGA
61.681
66.667
7.33
0.00
46.50
3.86
3337
3616
4.111375
ACGTAACAGCATCTAAGTCCTG
57.889
45.455
0.00
0.00
0.00
3.86
3357
3874
5.989777
ACATCTCACGGTTAAGCCATAATAC
59.010
40.000
0.00
0.00
36.97
1.89
3361
3878
3.449377
TCACATCTCACGGTTAAGCCATA
59.551
43.478
0.00
0.00
36.97
2.74
3362
3879
2.236146
TCACATCTCACGGTTAAGCCAT
59.764
45.455
0.00
0.00
36.97
4.40
3363
3880
1.621317
TCACATCTCACGGTTAAGCCA
59.379
47.619
0.00
0.00
36.97
4.75
3364
3881
2.380084
TCACATCTCACGGTTAAGCC
57.620
50.000
0.00
0.00
0.00
4.35
3386
3905
4.021229
TGTACCACATACAGAGACGGATT
58.979
43.478
0.00
0.00
38.95
3.01
3387
3906
3.628008
TGTACCACATACAGAGACGGAT
58.372
45.455
0.00
0.00
38.95
4.18
3388
3907
3.076079
TGTACCACATACAGAGACGGA
57.924
47.619
0.00
0.00
38.95
4.69
3390
3909
4.968181
CGTAATGTACCACATACAGAGACG
59.032
45.833
0.00
0.00
47.00
4.18
3391
3910
5.066893
TCCGTAATGTACCACATACAGAGAC
59.933
44.000
0.00
0.00
47.00
3.36
3392
3911
5.195185
TCCGTAATGTACCACATACAGAGA
58.805
41.667
0.00
0.00
47.00
3.10
3393
3912
5.509716
TCCGTAATGTACCACATACAGAG
57.490
43.478
0.00
0.00
47.00
3.35
3394
3913
5.595133
TGATCCGTAATGTACCACATACAGA
59.405
40.000
0.00
0.00
47.00
3.41
3395
3914
5.690409
GTGATCCGTAATGTACCACATACAG
59.310
44.000
0.00
0.00
47.00
2.74
3397
3916
4.986659
GGTGATCCGTAATGTACCACATAC
59.013
45.833
0.00
0.00
37.97
2.39
3398
3917
5.204409
GGTGATCCGTAATGTACCACATA
57.796
43.478
0.00
0.00
37.97
2.29
3399
3918
4.067972
GGTGATCCGTAATGTACCACAT
57.932
45.455
0.00
0.00
41.31
3.21
3400
3919
3.530265
GGTGATCCGTAATGTACCACA
57.470
47.619
0.00
0.00
0.00
4.17
3413
3932
0.108992
TTGTACGCTCACGGTGATCC
60.109
55.000
11.86
5.17
46.04
3.36
3414
3933
1.922570
ATTGTACGCTCACGGTGATC
58.077
50.000
11.86
6.60
46.04
2.92
3415
3934
3.513680
TTATTGTACGCTCACGGTGAT
57.486
42.857
11.86
0.00
46.04
3.06
3416
3935
3.300852
TTTATTGTACGCTCACGGTGA
57.699
42.857
10.88
10.88
46.04
4.02
3417
3936
3.000925
GGATTTATTGTACGCTCACGGTG
59.999
47.826
0.56
0.56
46.04
4.94
3418
3937
3.192466
GGATTTATTGTACGCTCACGGT
58.808
45.455
0.00
0.00
46.04
4.83
3419
3938
2.217847
CGGATTTATTGTACGCTCACGG
59.782
50.000
0.00
0.00
46.04
4.94
3421
3940
3.244579
GGACGGATTTATTGTACGCTCAC
59.755
47.826
0.00
0.00
0.00
3.51
3422
3941
3.450578
GGACGGATTTATTGTACGCTCA
58.549
45.455
0.00
0.00
0.00
4.26
3423
3942
2.798847
GGGACGGATTTATTGTACGCTC
59.201
50.000
0.00
0.00
0.00
5.03
3424
3943
2.484241
GGGGACGGATTTATTGTACGCT
60.484
50.000
0.00
0.00
0.00
5.07
3425
3944
1.869132
GGGGACGGATTTATTGTACGC
59.131
52.381
0.00
0.00
0.00
4.42
3443
3962
1.352114
CGTAATGTACCACACACGGG
58.648
55.000
7.16
0.00
40.86
5.28
3448
3967
3.192466
GGTGATCCGTAATGTACCACAC
58.808
50.000
0.00
0.00
0.00
3.82
3462
3987
0.460311
ACGATCTTCCACGGTGATCC
59.540
55.000
10.28
0.00
34.70
3.36
3465
3990
0.242825
GTCACGATCTTCCACGGTGA
59.757
55.000
10.28
0.00
0.00
4.02
3471
3996
1.608336
ACCCGGTCACGATCTTCCA
60.608
57.895
0.00
0.00
44.60
3.53
3489
4014
0.249447
CCGGATGAGCGAATACTGCA
60.249
55.000
0.00
0.00
33.85
4.41
3492
4017
0.311165
CGACCGGATGAGCGAATACT
59.689
55.000
9.46
0.00
0.00
2.12
3493
4018
0.030369
ACGACCGGATGAGCGAATAC
59.970
55.000
9.46
0.00
0.00
1.89
3494
4019
0.309922
GACGACCGGATGAGCGAATA
59.690
55.000
9.46
0.00
0.00
1.75
3495
4020
1.065928
GACGACCGGATGAGCGAAT
59.934
57.895
9.46
0.00
0.00
3.34
3496
4021
2.488355
GACGACCGGATGAGCGAA
59.512
61.111
9.46
0.00
0.00
4.70
3497
4022
3.515286
GGACGACCGGATGAGCGA
61.515
66.667
9.46
0.00
0.00
4.93
3498
4023
4.570663
GGGACGACCGGATGAGCG
62.571
72.222
9.46
6.16
36.97
5.03
3499
4024
1.179814
ATAGGGACGACCGGATGAGC
61.180
60.000
9.46
0.00
46.96
4.26
3500
4025
1.269998
GAATAGGGACGACCGGATGAG
59.730
57.143
9.46
0.00
46.96
2.90
3501
4026
1.325355
GAATAGGGACGACCGGATGA
58.675
55.000
9.46
0.00
46.96
2.92
3502
4027
0.039437
CGAATAGGGACGACCGGATG
60.039
60.000
9.46
1.33
46.96
3.51
3503
4028
0.466922
ACGAATAGGGACGACCGGAT
60.467
55.000
9.46
0.00
46.96
4.18
3504
4029
1.077501
ACGAATAGGGACGACCGGA
60.078
57.895
9.46
0.00
46.96
5.14
3505
4030
1.358046
GACGAATAGGGACGACCGG
59.642
63.158
0.00
0.00
46.96
5.28
3506
4031
1.099879
AGGACGAATAGGGACGACCG
61.100
60.000
0.00
0.00
45.37
4.79
3507
4032
1.878734
CTAGGACGAATAGGGACGACC
59.121
57.143
0.00
0.00
42.43
4.79
3508
4033
1.266446
GCTAGGACGAATAGGGACGAC
59.734
57.143
0.00
0.00
0.00
4.34
3509
4034
1.134007
TGCTAGGACGAATAGGGACGA
60.134
52.381
0.00
0.00
0.00
4.20
3510
4035
1.315690
TGCTAGGACGAATAGGGACG
58.684
55.000
0.00
0.00
0.00
4.79
3516
4041
2.958818
AGGGTGATGCTAGGACGAATA
58.041
47.619
0.00
0.00
0.00
1.75
3561
4119
0.474273
TCGTAGGGGAAAAGGTGGGT
60.474
55.000
0.00
0.00
0.00
4.51
3595
4153
9.993881
CAGATTAAACTTAACGAAAAATTGCTG
57.006
29.630
0.00
0.00
0.00
4.41
3668
4226
7.492344
TGCATGACTACTTACATCACATACTTG
59.508
37.037
0.00
0.00
0.00
3.16
3707
4265
3.758425
TGCCCATATGATGTTCATCTGG
58.242
45.455
3.65
12.57
45.45
3.86
3726
4284
7.278868
CCGGTCTCTATTTTTATCCATAGATGC
59.721
40.741
0.00
0.00
32.66
3.91
3733
4291
3.456644
TGCCCGGTCTCTATTTTTATCCA
59.543
43.478
0.00
0.00
0.00
3.41
3756
4315
0.389948
CTCGCTTCGGTTAGGCACTT
60.390
55.000
0.00
0.00
41.75
3.16
3757
4316
1.215647
CTCGCTTCGGTTAGGCACT
59.784
57.895
0.00
0.00
46.37
4.40
3767
4326
1.322936
GAATGTCTTCTGCTCGCTTCG
59.677
52.381
0.00
0.00
0.00
3.79
3772
4331
2.536329
CGCATTGAATGTCTTCTGCTCG
60.536
50.000
7.05
0.00
32.93
5.03
3776
4335
1.530441
CGCCGCATTGAATGTCTTCTG
60.530
52.381
7.05
0.00
32.29
3.02
3778
4337
0.726827
TCGCCGCATTGAATGTCTTC
59.273
50.000
7.05
0.00
0.00
2.87
3786
4345
1.398041
CATCTTCTTTCGCCGCATTGA
59.602
47.619
0.00
0.00
0.00
2.57
3789
4348
1.026182
TGCATCTTCTTTCGCCGCAT
61.026
50.000
0.00
0.00
0.00
4.73
3795
4354
2.554032
ACAACCCTTGCATCTTCTTTCG
59.446
45.455
0.00
0.00
0.00
3.46
3856
4415
4.516698
CCCCAATATTGATCACCTCTTTCG
59.483
45.833
17.23
0.00
0.00
3.46
3858
4417
5.732331
TCCCCAATATTGATCACCTCTTT
57.268
39.130
17.23
0.00
0.00
2.52
3860
4419
4.977739
TCTTCCCCAATATTGATCACCTCT
59.022
41.667
17.23
0.00
0.00
3.69
3873
4432
0.974383
ACGACGACTTCTTCCCCAAT
59.026
50.000
0.00
0.00
0.00
3.16
3920
4479
5.525484
ACTAGGTCCCTGTAATCATGTACA
58.475
41.667
0.00
0.00
33.04
2.90
3934
4493
4.700692
GTCAATCCTTCAAAACTAGGTCCC
59.299
45.833
0.00
0.00
0.00
4.46
3941
4501
2.814336
GAGGCGTCAATCCTTCAAAACT
59.186
45.455
0.52
0.00
33.24
2.66
3946
4506
0.976641
AGTGAGGCGTCAATCCTTCA
59.023
50.000
11.28
0.00
33.27
3.02
3957
4517
4.766404
ATTTTTACCAAGAAGTGAGGCG
57.234
40.909
0.00
0.00
0.00
5.52
3963
4523
9.185680
AGTGTGTCTTTATTTTTACCAAGAAGT
57.814
29.630
0.00
0.00
0.00
3.01
3964
4524
9.450807
CAGTGTGTCTTTATTTTTACCAAGAAG
57.549
33.333
0.00
0.00
0.00
2.85
3965
4525
8.410141
CCAGTGTGTCTTTATTTTTACCAAGAA
58.590
33.333
0.00
0.00
0.00
2.52
3966
4526
7.776030
TCCAGTGTGTCTTTATTTTTACCAAGA
59.224
33.333
0.00
0.00
0.00
3.02
3967
4527
7.936584
TCCAGTGTGTCTTTATTTTTACCAAG
58.063
34.615
0.00
0.00
0.00
3.61
3968
4528
7.776030
TCTCCAGTGTGTCTTTATTTTTACCAA
59.224
33.333
0.00
0.00
0.00
3.67
3969
4529
7.284074
TCTCCAGTGTGTCTTTATTTTTACCA
58.716
34.615
0.00
0.00
0.00
3.25
3970
4530
7.739498
TCTCCAGTGTGTCTTTATTTTTACC
57.261
36.000
0.00
0.00
0.00
2.85
4002
4562
3.129131
AGGTCCCTCCTCTCTCAGA
57.871
57.895
0.00
0.00
44.42
3.27
4031
4591
5.458041
AACGCTTGTCCTACTAGTAAACA
57.542
39.130
11.79
11.79
0.00
2.83
4045
4605
4.965119
AGAAAGAAGTTGAAACGCTTGT
57.035
36.364
5.51
0.00
31.89
3.16
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.