Multiple sequence alignment - TraesCS3B01G178600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G178600 chr3B 100.000 4073 0 0 1 4073 183081463 183085535 0.000000e+00 7522.0
1 TraesCS3B01G178600 chr3B 80.000 755 132 17 1897 2643 410774942 410774199 1.290000e-149 540.0
2 TraesCS3B01G178600 chr3B 77.455 275 54 7 2713 2983 410774098 410773828 1.520000e-34 158.0
3 TraesCS3B01G178600 chr3A 91.127 2750 129 48 698 3377 140807904 140805200 0.000000e+00 3620.0
4 TraesCS3B01G178600 chr3A 90.015 681 43 10 4 669 140808573 140807903 0.000000e+00 857.0
5 TraesCS3B01G178600 chr3A 79.665 777 141 16 1874 2643 421720843 421720077 9.960000e-151 544.0
6 TraesCS3B01G178600 chr3A 78.182 275 52 7 2713 2983 421719960 421719690 7.000000e-38 169.0
7 TraesCS3B01G178600 chr3A 88.889 135 11 4 3510 3643 140805109 140804978 3.260000e-36 163.0
8 TraesCS3B01G178600 chr3D 92.669 2469 90 23 921 3336 129024198 129026628 0.000000e+00 3472.0
9 TraesCS3B01G178600 chr3D 90.215 930 61 19 1 912 129023233 129024150 0.000000e+00 1186.0
10 TraesCS3B01G178600 chr3D 91.160 543 40 5 3533 4073 129027004 129027540 0.000000e+00 730.0
11 TraesCS3B01G178600 chr3D 79.896 766 135 17 1874 2631 310683039 310683793 9.960000e-151 544.0
12 TraesCS3B01G178600 chr3D 78.824 255 50 4 2713 2965 310684034 310684286 7.000000e-38 169.0
13 TraesCS3B01G178600 chr3D 97.500 40 1 0 3512 3551 129026950 129026989 7.310000e-08 69.4
14 TraesCS3B01G178600 chr1D 81.830 776 135 6 1867 2639 137968331 137967559 0.000000e+00 647.0
15 TraesCS3B01G178600 chr1A 81.306 781 134 10 1867 2641 154700612 154701386 1.240000e-174 623.0
16 TraesCS3B01G178600 chr1B 81.057 776 141 6 1867 2639 212410383 212409611 7.480000e-172 614.0
17 TraesCS3B01G178600 chr5D 79.135 393 41 19 2903 3284 359584081 359584443 2.450000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G178600 chr3B 183081463 183085535 4072 False 7522.000000 7522 100.000000 1 4073 1 chr3B.!!$F1 4072
1 TraesCS3B01G178600 chr3B 410773828 410774942 1114 True 349.000000 540 78.727500 1897 2983 2 chr3B.!!$R1 1086
2 TraesCS3B01G178600 chr3A 140804978 140808573 3595 True 1546.666667 3620 90.010333 4 3643 3 chr3A.!!$R1 3639
3 TraesCS3B01G178600 chr3A 421719690 421720843 1153 True 356.500000 544 78.923500 1874 2983 2 chr3A.!!$R2 1109
4 TraesCS3B01G178600 chr3D 129023233 129027540 4307 False 1364.350000 3472 92.886000 1 4073 4 chr3D.!!$F1 4072
5 TraesCS3B01G178600 chr3D 310683039 310684286 1247 False 356.500000 544 79.360000 1874 2965 2 chr3D.!!$F2 1091
6 TraesCS3B01G178600 chr1D 137967559 137968331 772 True 647.000000 647 81.830000 1867 2639 1 chr1D.!!$R1 772
7 TraesCS3B01G178600 chr1A 154700612 154701386 774 False 623.000000 623 81.306000 1867 2641 1 chr1A.!!$F1 774
8 TraesCS3B01G178600 chr1B 212409611 212410383 772 True 614.000000 614 81.057000 1867 2639 1 chr1B.!!$R1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 536 0.239082 TGCTACACGTACTGTCACCG 59.761 55.000 0.00 0.0 33.91 4.94 F
627 648 0.250901 AATTCCTGAGCGCCACAAGT 60.251 50.000 2.29 0.0 0.00 3.16 F
834 863 1.414181 CCCTATGTGGTTCAGCGAGAT 59.586 52.381 0.00 0.0 0.00 2.75 F
1419 1519 1.444553 GAGCACGTCGAGAAGGTGG 60.445 63.158 0.00 0.0 42.68 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 2247 0.242825 AGAAGTTGACGCGAATCGGA 59.757 50.000 15.93 0.00 43.86 4.55 R
2147 2253 1.405461 CGAAGAAGAAGTTGACGCGA 58.595 50.000 15.93 0.00 0.00 5.87 R
2659 2768 2.120232 CGGTTATCACAGCGATCAGTC 58.880 52.381 0.00 0.00 40.13 3.51 R
3413 3932 0.108992 TTGTACGCTCACGGTGATCC 60.109 55.000 11.86 5.17 46.04 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 94 3.372822 GTCCGAAATCCGAATTTGTGCTA 59.627 43.478 0.00 0.00 41.76 3.49
139 144 3.549794 CCCCCTGACAGAGAAAATGATC 58.450 50.000 3.32 0.00 0.00 2.92
150 155 2.044908 AGAAAATGATCCAAGGCCCCTT 59.955 45.455 0.00 0.00 36.60 3.95
280 286 0.386478 GCTTTGCCGAGTTGAAGCTG 60.386 55.000 0.00 0.00 40.87 4.24
308 320 0.972134 TGCTGAGGTCTGAGGTGAAG 59.028 55.000 0.00 0.00 0.00 3.02
350 362 2.885676 CGTCGCATATGCCCTGCAC 61.886 63.158 21.77 9.63 43.04 4.57
456 469 7.273320 CAATCTTTGCCTGAAGATCATATGT 57.727 36.000 1.90 0.00 43.66 2.29
469 482 9.987272 TGAAGATCATATGTATTTCCTACAGTG 57.013 33.333 1.90 0.00 43.44 3.66
472 485 7.514127 AGATCATATGTATTTCCTACAGTGGGT 59.486 37.037 2.32 0.00 43.44 4.51
484 497 1.490490 ACAGTGGGTGTGTCTGAATGT 59.510 47.619 0.00 0.00 38.28 2.71
486 499 2.549754 CAGTGGGTGTGTCTGAATGTTC 59.450 50.000 0.00 0.00 0.00 3.18
490 503 4.097892 GTGGGTGTGTCTGAATGTTCTTTT 59.902 41.667 0.00 0.00 0.00 2.27
495 508 6.638468 GGTGTGTCTGAATGTTCTTTTCATTC 59.362 38.462 10.48 10.48 46.33 2.67
507 520 2.014010 TTTCATTCCCCTGCTTTGCT 57.986 45.000 0.00 0.00 0.00 3.91
521 534 2.155155 GCTTTGCTACACGTACTGTCAC 59.845 50.000 0.00 0.00 33.91 3.67
522 535 2.427232 TTGCTACACGTACTGTCACC 57.573 50.000 0.00 0.00 33.91 4.02
523 536 0.239082 TGCTACACGTACTGTCACCG 59.761 55.000 0.00 0.00 33.91 4.94
524 537 0.455633 GCTACACGTACTGTCACCGG 60.456 60.000 0.00 0.00 33.91 5.28
529 550 4.065281 GTACTGTCACCGGCGCCT 62.065 66.667 26.68 2.78 0.00 5.52
606 627 1.227556 ATTGCCATACTCGTCGGCC 60.228 57.895 0.00 0.00 45.63 6.13
610 631 0.814010 GCCATACTCGTCGGCCAAAT 60.814 55.000 2.24 0.00 40.07 2.32
627 648 0.250901 AATTCCTGAGCGCCACAAGT 60.251 50.000 2.29 0.00 0.00 3.16
631 652 3.245948 CTGAGCGCCACAAGTGTGC 62.246 63.158 2.29 4.23 44.34 4.57
633 654 3.527360 GAGCGCCACAAGTGTGCAC 62.527 63.158 10.75 10.75 44.34 4.57
695 716 6.183360 ACGAAATATATACATACGGCCATCGA 60.183 38.462 2.24 0.00 42.43 3.59
764 793 3.857038 AGTCCGGCACCAACACGT 61.857 61.111 0.00 0.00 0.00 4.49
780 809 4.545823 ACACGTCGTGATCATTTTGTTT 57.454 36.364 30.95 1.50 36.96 2.83
794 823 3.441496 TTTGTTTTGAAGCTGGCAGAG 57.559 42.857 20.86 0.00 0.00 3.35
804 833 2.983229 AGCTGGCAGAGACTTGTTATG 58.017 47.619 20.86 0.00 0.00 1.90
805 834 2.304180 AGCTGGCAGAGACTTGTTATGT 59.696 45.455 20.86 0.00 0.00 2.29
806 835 3.077359 GCTGGCAGAGACTTGTTATGTT 58.923 45.455 20.86 0.00 0.00 2.71
807 836 4.020218 AGCTGGCAGAGACTTGTTATGTTA 60.020 41.667 20.86 0.00 0.00 2.41
808 837 4.878397 GCTGGCAGAGACTTGTTATGTTAT 59.122 41.667 20.86 0.00 0.00 1.89
834 863 1.414181 CCCTATGTGGTTCAGCGAGAT 59.586 52.381 0.00 0.00 0.00 2.75
843 872 4.172512 CAGCGAGATGGGCAGGCT 62.173 66.667 0.00 0.00 0.00 4.58
913 950 3.823873 ACCGAGCTACTGAGGATTGATAG 59.176 47.826 0.00 0.00 0.00 2.08
1359 1459 3.076296 GACGAGTCGCACATGCTGC 62.076 63.158 13.59 9.41 43.21 5.25
1392 1492 4.429212 CGTCGCCGATGGTGTCCA 62.429 66.667 0.00 0.00 38.19 4.02
1419 1519 1.444553 GAGCACGTCGAGAAGGTGG 60.445 63.158 0.00 0.00 42.68 4.61
1491 1591 2.203998 ACTCCCAGTCCCAGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
1569 1669 3.588336 GGGACACGAGCTACGACT 58.412 61.111 11.64 0.00 45.77 4.18
1757 1863 1.888018 CCCCGAACTCGACAAGCTA 59.112 57.895 0.00 0.00 43.02 3.32
2141 2247 2.496291 GCGGCGGGAGTACTACCAT 61.496 63.158 24.29 0.00 31.13 3.55
2147 2253 2.236766 CGGGAGTACTACCATCCGATT 58.763 52.381 24.29 0.00 39.83 3.34
2221 2330 4.489771 GCCGGAGATGGTGGTGGG 62.490 72.222 5.05 0.00 0.00 4.61
2228 2337 3.017581 ATGGTGGTGGGGAGCCTC 61.018 66.667 0.00 0.00 0.00 4.70
2300 2409 4.412843 TCAAGATATACGGGCAGTGGATA 58.587 43.478 0.00 0.00 0.00 2.59
2402 2511 2.399607 GGGGGCCATCATGGGGTTA 61.400 63.158 5.62 0.00 38.19 2.85
2486 2595 3.390521 TACCAGAGGCTGCCCACG 61.391 66.667 16.57 3.26 0.00 4.94
2659 2768 1.663445 GGTAAGCACCTCGATCGATCG 60.663 57.143 35.91 35.91 42.48 3.69
3030 3301 4.368808 CACGGCAACAAGGACGCG 62.369 66.667 3.53 3.53 0.00 6.01
3081 3352 0.178987 ATAGACCCTGATCGACGCCT 60.179 55.000 0.00 0.00 0.00 5.52
3083 3354 0.178987 AGACCCTGATCGACGCCTAT 60.179 55.000 0.00 0.00 0.00 2.57
3084 3355 1.073444 AGACCCTGATCGACGCCTATA 59.927 52.381 0.00 0.00 0.00 1.31
3085 3356 1.469308 GACCCTGATCGACGCCTATAG 59.531 57.143 0.00 0.00 0.00 1.31
3086 3357 1.073444 ACCCTGATCGACGCCTATAGA 59.927 52.381 0.00 0.00 0.00 1.98
3087 3358 1.469308 CCCTGATCGACGCCTATAGAC 59.531 57.143 0.00 0.00 0.00 2.59
3088 3359 1.469308 CCTGATCGACGCCTATAGACC 59.531 57.143 0.00 0.00 0.00 3.85
3089 3360 1.469308 CTGATCGACGCCTATAGACCC 59.531 57.143 0.00 0.00 0.00 4.46
3090 3361 1.073444 TGATCGACGCCTATAGACCCT 59.927 52.381 0.00 0.00 0.00 4.34
3091 3362 1.469308 GATCGACGCCTATAGACCCTG 59.531 57.143 0.00 0.00 0.00 4.45
3092 3363 0.471191 TCGACGCCTATAGACCCTGA 59.529 55.000 0.00 0.00 0.00 3.86
3093 3364 1.073444 TCGACGCCTATAGACCCTGAT 59.927 52.381 0.00 0.00 0.00 2.90
3094 3365 1.469308 CGACGCCTATAGACCCTGATC 59.531 57.143 0.00 0.00 0.00 2.92
3095 3366 1.469308 GACGCCTATAGACCCTGATCG 59.531 57.143 0.00 0.00 0.00 3.69
3096 3367 1.073444 ACGCCTATAGACCCTGATCGA 59.927 52.381 0.00 0.00 0.00 3.59
3097 3368 1.469308 CGCCTATAGACCCTGATCGAC 59.531 57.143 0.00 0.00 0.00 4.20
3098 3369 1.469308 GCCTATAGACCCTGATCGACG 59.531 57.143 0.00 0.00 0.00 5.12
3099 3370 1.469308 CCTATAGACCCTGATCGACGC 59.531 57.143 0.00 0.00 0.00 5.19
3100 3371 1.469308 CTATAGACCCTGATCGACGCC 59.531 57.143 0.00 0.00 0.00 5.68
3135 3412 1.180029 GCCTTCTTCATGCATGTGGT 58.820 50.000 25.43 0.00 0.00 4.16
3144 3421 2.063266 CATGCATGTGGTGAAGCAAAC 58.937 47.619 18.91 0.00 40.76 2.93
3145 3422 1.109609 TGCATGTGGTGAAGCAAACA 58.890 45.000 0.00 0.00 33.48 2.83
3146 3423 1.202394 TGCATGTGGTGAAGCAAACAC 60.202 47.619 0.00 0.00 37.51 3.32
3147 3424 1.067516 GCATGTGGTGAAGCAAACACT 59.932 47.619 0.00 0.00 38.20 3.55
3337 3616 3.047877 GCGTGGTGGTGTGTAGGC 61.048 66.667 0.00 0.00 0.00 3.93
3357 3874 2.860735 GCAGGACTTAGATGCTGTTACG 59.139 50.000 5.60 0.00 40.02 3.18
3361 3878 6.273825 CAGGACTTAGATGCTGTTACGTATT 58.726 40.000 0.00 0.00 33.62 1.89
3362 3879 7.423199 CAGGACTTAGATGCTGTTACGTATTA 58.577 38.462 0.00 0.00 33.62 0.98
3363 3880 8.082852 CAGGACTTAGATGCTGTTACGTATTAT 58.917 37.037 0.00 0.00 33.62 1.28
3364 3881 8.082852 AGGACTTAGATGCTGTTACGTATTATG 58.917 37.037 0.00 0.00 0.00 1.90
3386 3905 4.081365 TGGCTTAACCGTGAGATGTGATAA 60.081 41.667 0.00 0.00 43.94 1.75
3387 3906 4.873827 GGCTTAACCGTGAGATGTGATAAA 59.126 41.667 0.00 0.00 0.00 1.40
3388 3907 5.527582 GGCTTAACCGTGAGATGTGATAAAT 59.472 40.000 0.00 0.00 0.00 1.40
3390 3909 6.292919 GCTTAACCGTGAGATGTGATAAATCC 60.293 42.308 0.00 0.00 0.00 3.01
3391 3910 3.717707 ACCGTGAGATGTGATAAATCCG 58.282 45.455 0.00 0.00 0.00 4.18
3392 3911 3.132289 ACCGTGAGATGTGATAAATCCGT 59.868 43.478 0.00 0.00 0.00 4.69
3393 3912 3.736252 CCGTGAGATGTGATAAATCCGTC 59.264 47.826 0.00 0.00 0.00 4.79
3394 3913 4.499865 CCGTGAGATGTGATAAATCCGTCT 60.500 45.833 4.03 4.03 0.00 4.18
3395 3914 4.677378 CGTGAGATGTGATAAATCCGTCTC 59.323 45.833 16.11 16.11 38.80 3.36
3396 3915 5.506483 CGTGAGATGTGATAAATCCGTCTCT 60.506 44.000 19.89 6.66 38.94 3.10
3397 3916 5.689514 GTGAGATGTGATAAATCCGTCTCTG 59.310 44.000 19.89 0.00 38.94 3.35
3398 3917 5.360999 TGAGATGTGATAAATCCGTCTCTGT 59.639 40.000 19.89 0.05 38.94 3.41
3399 3918 6.546034 TGAGATGTGATAAATCCGTCTCTGTA 59.454 38.462 19.89 7.75 38.94 2.74
3400 3919 7.231519 TGAGATGTGATAAATCCGTCTCTGTAT 59.768 37.037 19.89 0.00 38.94 2.29
3401 3920 7.374272 AGATGTGATAAATCCGTCTCTGTATG 58.626 38.462 0.00 0.00 0.00 2.39
3402 3921 6.465439 TGTGATAAATCCGTCTCTGTATGT 57.535 37.500 0.00 0.00 0.00 2.29
3403 3922 6.273071 TGTGATAAATCCGTCTCTGTATGTG 58.727 40.000 0.00 0.00 0.00 3.21
3404 3923 5.692204 GTGATAAATCCGTCTCTGTATGTGG 59.308 44.000 0.00 0.00 0.00 4.17
3405 3924 5.362717 TGATAAATCCGTCTCTGTATGTGGT 59.637 40.000 0.00 0.00 0.00 4.16
3406 3925 6.548251 TGATAAATCCGTCTCTGTATGTGGTA 59.452 38.462 0.00 0.00 0.00 3.25
3407 3926 4.650754 AATCCGTCTCTGTATGTGGTAC 57.349 45.455 0.00 0.00 0.00 3.34
3408 3927 3.076079 TCCGTCTCTGTATGTGGTACA 57.924 47.619 0.00 0.00 40.93 2.90
3409 3928 3.628008 TCCGTCTCTGTATGTGGTACAT 58.372 45.455 0.00 0.00 44.52 2.29
3410 3929 4.021229 TCCGTCTCTGTATGTGGTACATT 58.979 43.478 0.00 0.00 44.52 2.71
3411 3930 5.195185 TCCGTCTCTGTATGTGGTACATTA 58.805 41.667 0.00 0.00 44.52 1.90
3412 3931 5.066893 TCCGTCTCTGTATGTGGTACATTAC 59.933 44.000 0.00 0.00 44.52 1.89
3413 3932 4.968181 CGTCTCTGTATGTGGTACATTACG 59.032 45.833 0.00 0.00 44.52 3.18
3414 3933 5.279384 GTCTCTGTATGTGGTACATTACGG 58.721 45.833 0.00 2.96 44.52 4.02
3415 3934 5.066893 GTCTCTGTATGTGGTACATTACGGA 59.933 44.000 0.00 6.41 44.52 4.69
3416 3935 5.831525 TCTCTGTATGTGGTACATTACGGAT 59.168 40.000 0.00 0.00 44.52 4.18
3417 3936 6.016527 TCTCTGTATGTGGTACATTACGGATC 60.017 42.308 0.00 0.00 44.52 3.36
3418 3937 5.595133 TCTGTATGTGGTACATTACGGATCA 59.405 40.000 0.00 0.00 44.52 2.92
3419 3938 5.593968 TGTATGTGGTACATTACGGATCAC 58.406 41.667 0.00 0.00 44.52 3.06
3420 3939 3.530265 TGTGGTACATTACGGATCACC 57.470 47.619 0.00 0.00 44.52 4.02
3443 3962 3.244579 GTGAGCGTACAATAAATCCGTCC 59.755 47.826 0.00 0.00 0.00 4.79
3448 3967 2.032680 ACAATAAATCCGTCCCCGTG 57.967 50.000 0.00 0.00 0.00 4.94
3462 3987 1.352114 CCCGTGTGTGGTACATTACG 58.648 55.000 11.92 11.92 44.52 3.18
3465 3990 2.883574 CGTGTGTGGTACATTACGGAT 58.116 47.619 11.35 0.00 44.52 4.18
3489 4014 1.608336 TGGAAGATCGTGACCGGGT 60.608 57.895 6.32 0.00 33.95 5.28
3492 4017 2.501223 GAAGATCGTGACCGGGTGCA 62.501 60.000 3.30 0.00 33.95 4.57
3493 4018 2.507110 AAGATCGTGACCGGGTGCAG 62.507 60.000 3.30 0.00 33.95 4.41
3494 4019 3.296709 GATCGTGACCGGGTGCAGT 62.297 63.158 3.30 0.00 33.95 4.40
3495 4020 1.940883 GATCGTGACCGGGTGCAGTA 61.941 60.000 3.30 0.00 33.95 2.74
3496 4021 1.327690 ATCGTGACCGGGTGCAGTAT 61.328 55.000 3.30 0.00 33.95 2.12
3497 4022 1.079405 CGTGACCGGGTGCAGTATT 60.079 57.895 3.30 0.00 0.00 1.89
3498 4023 1.082117 CGTGACCGGGTGCAGTATTC 61.082 60.000 3.30 0.00 0.00 1.75
3499 4024 1.082117 GTGACCGGGTGCAGTATTCG 61.082 60.000 3.30 0.00 0.00 3.34
3500 4025 2.125269 ACCGGGTGCAGTATTCGC 60.125 61.111 6.32 0.00 0.00 4.70
3501 4026 2.186903 CCGGGTGCAGTATTCGCT 59.813 61.111 0.00 0.00 0.00 4.93
3502 4027 1.883084 CCGGGTGCAGTATTCGCTC 60.883 63.158 0.00 0.00 0.00 5.03
3503 4028 1.153647 CGGGTGCAGTATTCGCTCA 60.154 57.895 0.00 0.00 0.00 4.26
3504 4029 0.530650 CGGGTGCAGTATTCGCTCAT 60.531 55.000 0.00 0.00 0.00 2.90
3505 4030 1.221414 GGGTGCAGTATTCGCTCATC 58.779 55.000 0.00 0.00 0.00 2.92
3506 4031 1.221414 GGTGCAGTATTCGCTCATCC 58.779 55.000 0.00 0.00 0.00 3.51
3507 4032 0.855349 GTGCAGTATTCGCTCATCCG 59.145 55.000 0.00 0.00 0.00 4.18
3508 4033 0.249447 TGCAGTATTCGCTCATCCGG 60.249 55.000 0.00 0.00 0.00 5.14
3509 4034 0.249489 GCAGTATTCGCTCATCCGGT 60.249 55.000 0.00 0.00 0.00 5.28
3510 4035 1.772182 CAGTATTCGCTCATCCGGTC 58.228 55.000 0.00 0.00 0.00 4.79
3516 4041 3.148279 GCTCATCCGGTCGTCCCT 61.148 66.667 0.00 0.00 0.00 4.20
3561 4119 3.253230 CGAAGCATGTCAGTATGTCACA 58.747 45.455 0.00 0.00 36.88 3.58
3582 4140 0.392595 CCACCTTTTCCCCTACGAGC 60.393 60.000 0.00 0.00 0.00 5.03
3595 4153 5.820947 TCCCCTACGAGCTATTGAAAATTTC 59.179 40.000 0.00 0.00 0.00 2.17
3601 4159 6.624423 ACGAGCTATTGAAAATTTCAGCAAT 58.376 32.000 16.93 14.38 41.38 3.56
3707 4265 6.994221 AGTAGTCATGCAATAGGGTACATAC 58.006 40.000 0.00 0.00 0.00 2.39
3733 4291 7.054751 CAGATGAACATCATATGGGCATCTAT 58.945 38.462 18.21 4.56 45.22 1.98
3756 4315 4.080243 TGGATAAAAATAGAGACCGGGCAA 60.080 41.667 11.69 0.00 0.00 4.52
3757 4316 4.885325 GGATAAAAATAGAGACCGGGCAAA 59.115 41.667 11.69 0.00 0.00 3.68
3772 4331 0.109735 GCAAAGTGCCTAACCGAAGC 60.110 55.000 0.00 0.00 37.42 3.86
3776 4335 2.125673 TGCCTAACCGAAGCGAGC 60.126 61.111 0.00 0.00 0.00 5.03
3778 4337 2.167861 GCCTAACCGAAGCGAGCAG 61.168 63.158 0.00 0.00 0.00 4.24
3786 4345 1.354040 CGAAGCGAGCAGAAGACATT 58.646 50.000 0.00 0.00 0.00 2.71
3789 4348 2.462456 AGCGAGCAGAAGACATTCAA 57.538 45.000 0.00 0.00 37.94 2.69
3795 4354 1.796617 GCAGAAGACATTCAATGCGGC 60.797 52.381 0.00 0.00 37.94 6.53
3811 4370 0.097674 CGGCGAAAGAAGATGCAAGG 59.902 55.000 0.00 0.00 0.00 3.61
3817 4376 3.004734 CGAAAGAAGATGCAAGGGTTGTT 59.995 43.478 0.00 0.00 0.00 2.83
3820 4379 4.640771 AGAAGATGCAAGGGTTGTTCTA 57.359 40.909 0.00 0.00 0.00 2.10
3856 4415 0.579630 TGCGTTGTTCGTCATGTCAC 59.420 50.000 0.00 0.00 42.13 3.67
3858 4417 1.125270 CGTTGTTCGTCATGTCACGA 58.875 50.000 5.60 5.60 46.91 4.35
3873 4432 5.400066 TGTCACGAAAGAGGTGATCAATA 57.600 39.130 0.00 0.00 45.29 1.90
3934 4493 7.015098 AGGAAGATCCTCTGTACATGATTACAG 59.985 40.741 14.44 14.44 45.66 2.74
3941 4501 5.773091 TCTGTACATGATTACAGGGACCTA 58.227 41.667 18.43 1.62 46.21 3.08
3946 4506 6.388619 ACATGATTACAGGGACCTAGTTTT 57.611 37.500 0.00 0.00 31.68 2.43
3957 4517 4.700692 GGGACCTAGTTTTGAAGGATTGAC 59.299 45.833 0.00 0.00 0.00 3.18
3963 4523 2.552315 GTTTTGAAGGATTGACGCCTCA 59.448 45.455 0.00 0.00 33.76 3.86
3964 4524 1.808411 TTGAAGGATTGACGCCTCAC 58.192 50.000 0.00 0.00 33.76 3.51
3965 4525 0.976641 TGAAGGATTGACGCCTCACT 59.023 50.000 0.00 0.00 33.76 3.41
3966 4526 1.347707 TGAAGGATTGACGCCTCACTT 59.652 47.619 0.00 0.00 33.76 3.16
3967 4527 2.003301 GAAGGATTGACGCCTCACTTC 58.997 52.381 0.00 0.00 33.76 3.01
3968 4528 1.270907 AGGATTGACGCCTCACTTCT 58.729 50.000 0.00 0.00 0.00 2.85
3969 4529 1.625818 AGGATTGACGCCTCACTTCTT 59.374 47.619 0.00 0.00 0.00 2.52
3970 4530 1.734465 GGATTGACGCCTCACTTCTTG 59.266 52.381 0.00 0.00 0.00 3.02
4002 4562 2.894126 AGACACACTGGAGATTCTCGTT 59.106 45.455 7.57 0.00 0.00 3.85
4045 4605 9.624373 CTCTTATAGGTGTGTTTACTAGTAGGA 57.376 37.037 2.23 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 52 6.373216 TCGGACGGATCATTACAATTTTCTTT 59.627 34.615 0.00 0.00 0.00 2.52
90 94 5.780793 AGTCTAATCACTGTCTACCCAAAGT 59.219 40.000 0.00 0.00 0.00 2.66
139 144 0.186143 GGGATAGAAAGGGGCCTTGG 59.814 60.000 0.84 0.00 36.26 3.61
150 155 2.110899 TGCCAAAACCCTTGGGATAGAA 59.889 45.455 13.39 0.00 39.90 2.10
280 286 5.055812 CCTCAGACCTCAGCAATAGAAATC 58.944 45.833 0.00 0.00 0.00 2.17
308 320 6.035112 CGAAGTCTGAATTTTCTAGTACCAGC 59.965 42.308 0.00 0.00 0.00 4.85
350 362 2.224549 TGTAAGAAACGGTGCCAATTCG 59.775 45.455 0.00 0.00 0.00 3.34
385 397 2.885266 TCAGTAGGATGTAGGCACGATC 59.115 50.000 0.00 0.00 0.00 3.69
388 401 3.643763 GATTCAGTAGGATGTAGGCACG 58.356 50.000 0.00 0.00 0.00 5.34
389 402 3.643763 CGATTCAGTAGGATGTAGGCAC 58.356 50.000 0.00 0.00 0.00 5.01
455 468 4.020485 AGACACACCCACTGTAGGAAATAC 60.020 45.833 0.00 0.00 34.72 1.89
456 469 4.020573 CAGACACACCCACTGTAGGAAATA 60.021 45.833 0.00 0.00 0.00 1.40
469 482 4.338118 TGAAAAGAACATTCAGACACACCC 59.662 41.667 0.00 0.00 33.15 4.61
484 497 3.244181 GCAAAGCAGGGGAATGAAAAGAA 60.244 43.478 0.00 0.00 0.00 2.52
486 499 2.301009 AGCAAAGCAGGGGAATGAAAAG 59.699 45.455 0.00 0.00 0.00 2.27
490 503 1.354031 TGTAGCAAAGCAGGGGAATGA 59.646 47.619 0.00 0.00 0.00 2.57
495 508 0.036765 TACGTGTAGCAAAGCAGGGG 60.037 55.000 0.00 0.00 0.00 4.79
507 520 1.580942 GCCGGTGACAGTACGTGTA 59.419 57.895 1.90 0.00 40.56 2.90
529 550 1.488705 CCTGGTCTGCTGGTAACCCA 61.489 60.000 0.00 0.00 38.87 4.51
606 627 0.597568 TTGTGGCGCTCAGGAATTTG 59.402 50.000 7.64 0.00 0.00 2.32
610 631 1.597854 CACTTGTGGCGCTCAGGAA 60.598 57.895 17.87 6.29 0.00 3.36
627 648 3.005684 GTCAAAGGAAATGGATGTGCACA 59.994 43.478 24.08 24.08 0.00 4.57
631 652 5.909621 AGATGTCAAAGGAAATGGATGTG 57.090 39.130 0.00 0.00 0.00 3.21
633 654 5.107133 GCAAGATGTCAAAGGAAATGGATG 58.893 41.667 0.00 0.00 0.00 3.51
695 716 0.870307 GCAACTCGACGCCGATGTAT 60.870 55.000 0.00 0.00 44.62 2.29
764 793 5.686841 CAGCTTCAAAACAAAATGATCACGA 59.313 36.000 0.00 0.00 0.00 4.35
780 809 1.141657 ACAAGTCTCTGCCAGCTTCAA 59.858 47.619 0.00 0.00 0.00 2.69
804 833 7.705325 CGCTGAACCACATAGGGTATATATAAC 59.295 40.741 0.00 0.00 37.53 1.89
805 834 7.616542 TCGCTGAACCACATAGGGTATATATAA 59.383 37.037 0.00 0.00 37.53 0.98
806 835 7.120716 TCGCTGAACCACATAGGGTATATATA 58.879 38.462 0.00 0.00 37.53 0.86
807 836 5.955959 TCGCTGAACCACATAGGGTATATAT 59.044 40.000 0.00 0.00 37.53 0.86
808 837 5.326900 TCGCTGAACCACATAGGGTATATA 58.673 41.667 0.00 0.00 37.53 0.86
843 872 1.747325 GAAGCCAAAACCAGCTGCCA 61.747 55.000 8.66 0.00 39.87 4.92
913 950 1.004595 GAACCACCGATTCCTTACGC 58.995 55.000 0.00 0.00 0.00 4.42
1107 1198 0.804364 TCAAGTCGGCATTGCATGAC 59.196 50.000 19.72 19.72 36.29 3.06
1406 1506 0.666577 GGAACACCACCTTCTCGACG 60.667 60.000 0.00 0.00 0.00 5.12
1407 1507 0.666577 CGGAACACCACCTTCTCGAC 60.667 60.000 0.00 0.00 0.00 4.20
1413 1513 2.030562 CGAGCGGAACACCACCTT 59.969 61.111 0.00 0.00 0.00 3.50
1450 1550 2.651361 CGTTGGACAGCTCGGAGT 59.349 61.111 6.90 0.00 0.00 3.85
1461 1561 3.319198 GGAGTCCTGGGCGTTGGA 61.319 66.667 0.41 0.00 0.00 3.53
1464 1564 3.322466 CTGGGAGTCCTGGGCGTT 61.322 66.667 9.58 0.00 0.00 4.84
1491 1591 1.128724 CTCATCGAGTCGTCGTGCAC 61.129 60.000 13.12 6.82 46.85 4.57
1550 1650 3.807538 TCGTAGCTCGTGTCCCGC 61.808 66.667 0.00 0.00 40.80 6.13
1551 1651 2.099831 GTCGTAGCTCGTGTCCCG 59.900 66.667 0.00 0.00 40.80 5.14
1757 1863 2.500714 TTGCTCGTGGTGTACCCGT 61.501 57.895 10.31 0.00 35.15 5.28
2141 2247 0.242825 AGAAGTTGACGCGAATCGGA 59.757 50.000 15.93 0.00 43.86 4.55
2147 2253 1.405461 CGAAGAAGAAGTTGACGCGA 58.595 50.000 15.93 0.00 0.00 5.87
2228 2337 3.390521 TACCAGAGCCAGTGCGGG 61.391 66.667 0.00 0.00 44.33 6.13
2659 2768 2.120232 CGGTTATCACAGCGATCAGTC 58.880 52.381 0.00 0.00 40.13 3.51
2666 2775 2.120232 GATCAGTCGGTTATCACAGCG 58.880 52.381 0.00 0.00 39.05 5.18
2667 2776 2.120232 CGATCAGTCGGTTATCACAGC 58.880 52.381 0.00 0.00 44.00 4.40
2725 2993 2.162681 GAACCCCCTGAACATGTTGAG 58.837 52.381 17.58 17.33 0.00 3.02
3030 3301 0.179108 GGTCTCTGTATGCGGTGTCC 60.179 60.000 0.00 0.00 0.00 4.02
3041 3312 2.995872 GCGGCTTCGAGGTCTCTGT 61.996 63.158 0.00 0.00 35.61 3.41
3081 3352 1.531423 GGCGTCGATCAGGGTCTATA 58.469 55.000 0.00 0.00 0.00 1.31
3083 3354 2.184830 CGGCGTCGATCAGGGTCTA 61.185 63.158 1.44 0.00 39.00 2.59
3084 3355 3.518998 CGGCGTCGATCAGGGTCT 61.519 66.667 1.44 0.00 39.00 3.85
3085 3356 3.515286 TCGGCGTCGATCAGGGTC 61.515 66.667 8.66 0.00 40.88 4.46
3093 3364 1.792301 CTAGTTCAGTCGGCGTCGA 59.208 57.895 8.66 8.66 43.86 4.20
3094 3365 1.868251 GCTAGTTCAGTCGGCGTCG 60.868 63.158 1.15 1.15 37.82 5.12
3095 3366 1.868251 CGCTAGTTCAGTCGGCGTC 60.868 63.158 6.85 0.00 40.78 5.19
3096 3367 2.178521 CGCTAGTTCAGTCGGCGT 59.821 61.111 6.85 0.00 40.78 5.68
3097 3368 1.868251 GTCGCTAGTTCAGTCGGCG 60.868 63.158 0.00 0.00 45.93 6.46
3098 3369 1.868251 CGTCGCTAGTTCAGTCGGC 60.868 63.158 0.00 0.00 0.00 5.54
3099 3370 1.868251 GCGTCGCTAGTTCAGTCGG 60.868 63.158 10.68 0.00 0.00 4.79
3100 3371 1.868251 GGCGTCGCTAGTTCAGTCG 60.868 63.158 18.11 0.00 0.00 4.18
3135 3412 1.679139 CCACCAGAGTGTTTGCTTCA 58.321 50.000 0.00 0.00 42.88 3.02
3144 3421 2.047844 CCAGTCGCCACCAGAGTG 60.048 66.667 0.00 0.00 44.12 3.51
3145 3422 2.524394 ACCAGTCGCCACCAGAGT 60.524 61.111 0.00 0.00 0.00 3.24
3146 3423 2.262915 GACCAGTCGCCACCAGAG 59.737 66.667 0.00 0.00 0.00 3.35
3147 3424 3.680786 CGACCAGTCGCCACCAGA 61.681 66.667 7.33 0.00 46.50 3.86
3337 3616 4.111375 ACGTAACAGCATCTAAGTCCTG 57.889 45.455 0.00 0.00 0.00 3.86
3357 3874 5.989777 ACATCTCACGGTTAAGCCATAATAC 59.010 40.000 0.00 0.00 36.97 1.89
3361 3878 3.449377 TCACATCTCACGGTTAAGCCATA 59.551 43.478 0.00 0.00 36.97 2.74
3362 3879 2.236146 TCACATCTCACGGTTAAGCCAT 59.764 45.455 0.00 0.00 36.97 4.40
3363 3880 1.621317 TCACATCTCACGGTTAAGCCA 59.379 47.619 0.00 0.00 36.97 4.75
3364 3881 2.380084 TCACATCTCACGGTTAAGCC 57.620 50.000 0.00 0.00 0.00 4.35
3386 3905 4.021229 TGTACCACATACAGAGACGGATT 58.979 43.478 0.00 0.00 38.95 3.01
3387 3906 3.628008 TGTACCACATACAGAGACGGAT 58.372 45.455 0.00 0.00 38.95 4.18
3388 3907 3.076079 TGTACCACATACAGAGACGGA 57.924 47.619 0.00 0.00 38.95 4.69
3390 3909 4.968181 CGTAATGTACCACATACAGAGACG 59.032 45.833 0.00 0.00 47.00 4.18
3391 3910 5.066893 TCCGTAATGTACCACATACAGAGAC 59.933 44.000 0.00 0.00 47.00 3.36
3392 3911 5.195185 TCCGTAATGTACCACATACAGAGA 58.805 41.667 0.00 0.00 47.00 3.10
3393 3912 5.509716 TCCGTAATGTACCACATACAGAG 57.490 43.478 0.00 0.00 47.00 3.35
3394 3913 5.595133 TGATCCGTAATGTACCACATACAGA 59.405 40.000 0.00 0.00 47.00 3.41
3395 3914 5.690409 GTGATCCGTAATGTACCACATACAG 59.310 44.000 0.00 0.00 47.00 2.74
3397 3916 4.986659 GGTGATCCGTAATGTACCACATAC 59.013 45.833 0.00 0.00 37.97 2.39
3398 3917 5.204409 GGTGATCCGTAATGTACCACATA 57.796 43.478 0.00 0.00 37.97 2.29
3399 3918 4.067972 GGTGATCCGTAATGTACCACAT 57.932 45.455 0.00 0.00 41.31 3.21
3400 3919 3.530265 GGTGATCCGTAATGTACCACA 57.470 47.619 0.00 0.00 0.00 4.17
3413 3932 0.108992 TTGTACGCTCACGGTGATCC 60.109 55.000 11.86 5.17 46.04 3.36
3414 3933 1.922570 ATTGTACGCTCACGGTGATC 58.077 50.000 11.86 6.60 46.04 2.92
3415 3934 3.513680 TTATTGTACGCTCACGGTGAT 57.486 42.857 11.86 0.00 46.04 3.06
3416 3935 3.300852 TTTATTGTACGCTCACGGTGA 57.699 42.857 10.88 10.88 46.04 4.02
3417 3936 3.000925 GGATTTATTGTACGCTCACGGTG 59.999 47.826 0.56 0.56 46.04 4.94
3418 3937 3.192466 GGATTTATTGTACGCTCACGGT 58.808 45.455 0.00 0.00 46.04 4.83
3419 3938 2.217847 CGGATTTATTGTACGCTCACGG 59.782 50.000 0.00 0.00 46.04 4.94
3421 3940 3.244579 GGACGGATTTATTGTACGCTCAC 59.755 47.826 0.00 0.00 0.00 3.51
3422 3941 3.450578 GGACGGATTTATTGTACGCTCA 58.549 45.455 0.00 0.00 0.00 4.26
3423 3942 2.798847 GGGACGGATTTATTGTACGCTC 59.201 50.000 0.00 0.00 0.00 5.03
3424 3943 2.484241 GGGGACGGATTTATTGTACGCT 60.484 50.000 0.00 0.00 0.00 5.07
3425 3944 1.869132 GGGGACGGATTTATTGTACGC 59.131 52.381 0.00 0.00 0.00 4.42
3443 3962 1.352114 CGTAATGTACCACACACGGG 58.648 55.000 7.16 0.00 40.86 5.28
3448 3967 3.192466 GGTGATCCGTAATGTACCACAC 58.808 50.000 0.00 0.00 0.00 3.82
3462 3987 0.460311 ACGATCTTCCACGGTGATCC 59.540 55.000 10.28 0.00 34.70 3.36
3465 3990 0.242825 GTCACGATCTTCCACGGTGA 59.757 55.000 10.28 0.00 0.00 4.02
3471 3996 1.608336 ACCCGGTCACGATCTTCCA 60.608 57.895 0.00 0.00 44.60 3.53
3489 4014 0.249447 CCGGATGAGCGAATACTGCA 60.249 55.000 0.00 0.00 33.85 4.41
3492 4017 0.311165 CGACCGGATGAGCGAATACT 59.689 55.000 9.46 0.00 0.00 2.12
3493 4018 0.030369 ACGACCGGATGAGCGAATAC 59.970 55.000 9.46 0.00 0.00 1.89
3494 4019 0.309922 GACGACCGGATGAGCGAATA 59.690 55.000 9.46 0.00 0.00 1.75
3495 4020 1.065928 GACGACCGGATGAGCGAAT 59.934 57.895 9.46 0.00 0.00 3.34
3496 4021 2.488355 GACGACCGGATGAGCGAA 59.512 61.111 9.46 0.00 0.00 4.70
3497 4022 3.515286 GGACGACCGGATGAGCGA 61.515 66.667 9.46 0.00 0.00 4.93
3498 4023 4.570663 GGGACGACCGGATGAGCG 62.571 72.222 9.46 6.16 36.97 5.03
3499 4024 1.179814 ATAGGGACGACCGGATGAGC 61.180 60.000 9.46 0.00 46.96 4.26
3500 4025 1.269998 GAATAGGGACGACCGGATGAG 59.730 57.143 9.46 0.00 46.96 2.90
3501 4026 1.325355 GAATAGGGACGACCGGATGA 58.675 55.000 9.46 0.00 46.96 2.92
3502 4027 0.039437 CGAATAGGGACGACCGGATG 60.039 60.000 9.46 1.33 46.96 3.51
3503 4028 0.466922 ACGAATAGGGACGACCGGAT 60.467 55.000 9.46 0.00 46.96 4.18
3504 4029 1.077501 ACGAATAGGGACGACCGGA 60.078 57.895 9.46 0.00 46.96 5.14
3505 4030 1.358046 GACGAATAGGGACGACCGG 59.642 63.158 0.00 0.00 46.96 5.28
3506 4031 1.099879 AGGACGAATAGGGACGACCG 61.100 60.000 0.00 0.00 45.37 4.79
3507 4032 1.878734 CTAGGACGAATAGGGACGACC 59.121 57.143 0.00 0.00 42.43 4.79
3508 4033 1.266446 GCTAGGACGAATAGGGACGAC 59.734 57.143 0.00 0.00 0.00 4.34
3509 4034 1.134007 TGCTAGGACGAATAGGGACGA 60.134 52.381 0.00 0.00 0.00 4.20
3510 4035 1.315690 TGCTAGGACGAATAGGGACG 58.684 55.000 0.00 0.00 0.00 4.79
3516 4041 2.958818 AGGGTGATGCTAGGACGAATA 58.041 47.619 0.00 0.00 0.00 1.75
3561 4119 0.474273 TCGTAGGGGAAAAGGTGGGT 60.474 55.000 0.00 0.00 0.00 4.51
3595 4153 9.993881 CAGATTAAACTTAACGAAAAATTGCTG 57.006 29.630 0.00 0.00 0.00 4.41
3668 4226 7.492344 TGCATGACTACTTACATCACATACTTG 59.508 37.037 0.00 0.00 0.00 3.16
3707 4265 3.758425 TGCCCATATGATGTTCATCTGG 58.242 45.455 3.65 12.57 45.45 3.86
3726 4284 7.278868 CCGGTCTCTATTTTTATCCATAGATGC 59.721 40.741 0.00 0.00 32.66 3.91
3733 4291 3.456644 TGCCCGGTCTCTATTTTTATCCA 59.543 43.478 0.00 0.00 0.00 3.41
3756 4315 0.389948 CTCGCTTCGGTTAGGCACTT 60.390 55.000 0.00 0.00 41.75 3.16
3757 4316 1.215647 CTCGCTTCGGTTAGGCACT 59.784 57.895 0.00 0.00 46.37 4.40
3767 4326 1.322936 GAATGTCTTCTGCTCGCTTCG 59.677 52.381 0.00 0.00 0.00 3.79
3772 4331 2.536329 CGCATTGAATGTCTTCTGCTCG 60.536 50.000 7.05 0.00 32.93 5.03
3776 4335 1.530441 CGCCGCATTGAATGTCTTCTG 60.530 52.381 7.05 0.00 32.29 3.02
3778 4337 0.726827 TCGCCGCATTGAATGTCTTC 59.273 50.000 7.05 0.00 0.00 2.87
3786 4345 1.398041 CATCTTCTTTCGCCGCATTGA 59.602 47.619 0.00 0.00 0.00 2.57
3789 4348 1.026182 TGCATCTTCTTTCGCCGCAT 61.026 50.000 0.00 0.00 0.00 4.73
3795 4354 2.554032 ACAACCCTTGCATCTTCTTTCG 59.446 45.455 0.00 0.00 0.00 3.46
3856 4415 4.516698 CCCCAATATTGATCACCTCTTTCG 59.483 45.833 17.23 0.00 0.00 3.46
3858 4417 5.732331 TCCCCAATATTGATCACCTCTTT 57.268 39.130 17.23 0.00 0.00 2.52
3860 4419 4.977739 TCTTCCCCAATATTGATCACCTCT 59.022 41.667 17.23 0.00 0.00 3.69
3873 4432 0.974383 ACGACGACTTCTTCCCCAAT 59.026 50.000 0.00 0.00 0.00 3.16
3920 4479 5.525484 ACTAGGTCCCTGTAATCATGTACA 58.475 41.667 0.00 0.00 33.04 2.90
3934 4493 4.700692 GTCAATCCTTCAAAACTAGGTCCC 59.299 45.833 0.00 0.00 0.00 4.46
3941 4501 2.814336 GAGGCGTCAATCCTTCAAAACT 59.186 45.455 0.52 0.00 33.24 2.66
3946 4506 0.976641 AGTGAGGCGTCAATCCTTCA 59.023 50.000 11.28 0.00 33.27 3.02
3957 4517 4.766404 ATTTTTACCAAGAAGTGAGGCG 57.234 40.909 0.00 0.00 0.00 5.52
3963 4523 9.185680 AGTGTGTCTTTATTTTTACCAAGAAGT 57.814 29.630 0.00 0.00 0.00 3.01
3964 4524 9.450807 CAGTGTGTCTTTATTTTTACCAAGAAG 57.549 33.333 0.00 0.00 0.00 2.85
3965 4525 8.410141 CCAGTGTGTCTTTATTTTTACCAAGAA 58.590 33.333 0.00 0.00 0.00 2.52
3966 4526 7.776030 TCCAGTGTGTCTTTATTTTTACCAAGA 59.224 33.333 0.00 0.00 0.00 3.02
3967 4527 7.936584 TCCAGTGTGTCTTTATTTTTACCAAG 58.063 34.615 0.00 0.00 0.00 3.61
3968 4528 7.776030 TCTCCAGTGTGTCTTTATTTTTACCAA 59.224 33.333 0.00 0.00 0.00 3.67
3969 4529 7.284074 TCTCCAGTGTGTCTTTATTTTTACCA 58.716 34.615 0.00 0.00 0.00 3.25
3970 4530 7.739498 TCTCCAGTGTGTCTTTATTTTTACC 57.261 36.000 0.00 0.00 0.00 2.85
4002 4562 3.129131 AGGTCCCTCCTCTCTCAGA 57.871 57.895 0.00 0.00 44.42 3.27
4031 4591 5.458041 AACGCTTGTCCTACTAGTAAACA 57.542 39.130 11.79 11.79 0.00 2.83
4045 4605 4.965119 AGAAAGAAGTTGAAACGCTTGT 57.035 36.364 5.51 0.00 31.89 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.