Multiple sequence alignment - TraesCS3B01G178500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G178500 chr3B 100.000 2963 0 0 1 2963 182753107 182756069 0.000000e+00 5472.0
1 TraesCS3B01G178500 chr3B 77.083 144 26 5 2675 2812 432948563 432948421 3.170000e-10 76.8
2 TraesCS3B01G178500 chr3A 93.571 1400 57 12 801 2192 140957849 140956475 0.000000e+00 2056.0
3 TraesCS3B01G178500 chr3A 88.785 321 25 6 2243 2554 140956477 140956159 1.670000e-102 383.0
4 TraesCS3B01G178500 chr3A 82.911 158 18 6 2661 2811 481084367 481084212 1.850000e-27 134.0
5 TraesCS3B01G178500 chr3A 90.476 42 4 0 2613 2654 140954761 140954720 4.130000e-04 56.5
6 TraesCS3B01G178500 chr3D 94.265 959 28 6 809 1755 129006660 129007603 0.000000e+00 1441.0
7 TraesCS3B01G178500 chr3D 93.193 808 52 3 1 807 40990938 40991743 0.000000e+00 1184.0
8 TraesCS3B01G178500 chr3D 90.323 310 24 5 2243 2548 129014201 129014508 4.600000e-108 401.0
9 TraesCS3B01G178500 chr3D 90.189 265 14 3 1930 2189 129013943 129014200 4.730000e-88 335.0
10 TraesCS3B01G178500 chr3D 95.855 193 8 0 1751 1943 129013009 129013201 2.220000e-81 313.0
11 TraesCS3B01G178500 chr6D 96.513 803 28 0 1 803 96700262 96701064 0.000000e+00 1328.0
12 TraesCS3B01G178500 chr2D 96.264 803 30 0 1 803 66553931 66553129 0.000000e+00 1317.0
13 TraesCS3B01G178500 chr2D 96.015 803 32 0 1 803 90248823 90248021 0.000000e+00 1306.0
14 TraesCS3B01G178500 chr2D 93.026 803 53 2 1 803 495035903 495035104 0.000000e+00 1170.0
15 TraesCS3B01G178500 chr7D 95.890 803 33 0 1 803 29983517 29984319 0.000000e+00 1301.0
16 TraesCS3B01G178500 chr5D 95.766 803 34 0 1 803 411999807 411999005 0.000000e+00 1295.0
17 TraesCS3B01G178500 chr5D 95.539 807 36 0 1 807 412043824 412043018 0.000000e+00 1291.0
18 TraesCS3B01G178500 chr5D 76.025 951 154 47 1011 1933 429150825 429149921 2.730000e-115 425.0
19 TraesCS3B01G178500 chr5D 85.714 161 18 4 2679 2835 474221471 474221630 6.570000e-37 165.0
20 TraesCS3B01G178500 chr2A 94.951 812 35 3 1 811 194707229 194708035 0.000000e+00 1267.0
21 TraesCS3B01G178500 chr2A 79.866 149 21 8 2673 2814 61784497 61784351 1.880000e-17 100.0
22 TraesCS3B01G178500 chr5A 75.645 969 168 41 990 1933 545048896 545047971 1.270000e-113 420.0
23 TraesCS3B01G178500 chr5A 82.394 142 18 5 2683 2818 328713780 328713640 1.870000e-22 117.0
24 TraesCS3B01G178500 chr5A 82.075 106 12 5 2671 2769 120308423 120308318 1.890000e-12 84.2
25 TraesCS3B01G178500 chr7A 82.249 169 24 4 2672 2835 603290347 603290180 1.110000e-29 141.0
26 TraesCS3B01G178500 chr7A 75.936 187 37 7 2657 2837 510144480 510144296 4.070000e-14 89.8
27 TraesCS3B01G178500 chr4D 82.692 156 22 2 2682 2832 62302533 62302378 1.850000e-27 134.0
28 TraesCS3B01G178500 chr4D 87.179 78 3 4 2671 2742 52036169 52036245 6.810000e-12 82.4
29 TraesCS3B01G178500 chr2B 83.696 92 12 3 2874 2963 235159335 235159245 1.890000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G178500 chr3B 182753107 182756069 2962 False 5472.000000 5472 100.000000 1 2963 1 chr3B.!!$F1 2962
1 TraesCS3B01G178500 chr3A 140954720 140957849 3129 True 831.833333 2056 90.944000 801 2654 3 chr3A.!!$R2 1853
2 TraesCS3B01G178500 chr3D 129006660 129007603 943 False 1441.000000 1441 94.265000 809 1755 1 chr3D.!!$F2 946
3 TraesCS3B01G178500 chr3D 40990938 40991743 805 False 1184.000000 1184 93.193000 1 807 1 chr3D.!!$F1 806
4 TraesCS3B01G178500 chr3D 129013009 129014508 1499 False 349.666667 401 92.122333 1751 2548 3 chr3D.!!$F3 797
5 TraesCS3B01G178500 chr6D 96700262 96701064 802 False 1328.000000 1328 96.513000 1 803 1 chr6D.!!$F1 802
6 TraesCS3B01G178500 chr2D 66553129 66553931 802 True 1317.000000 1317 96.264000 1 803 1 chr2D.!!$R1 802
7 TraesCS3B01G178500 chr2D 90248021 90248823 802 True 1306.000000 1306 96.015000 1 803 1 chr2D.!!$R2 802
8 TraesCS3B01G178500 chr2D 495035104 495035903 799 True 1170.000000 1170 93.026000 1 803 1 chr2D.!!$R3 802
9 TraesCS3B01G178500 chr7D 29983517 29984319 802 False 1301.000000 1301 95.890000 1 803 1 chr7D.!!$F1 802
10 TraesCS3B01G178500 chr5D 411999005 411999807 802 True 1295.000000 1295 95.766000 1 803 1 chr5D.!!$R1 802
11 TraesCS3B01G178500 chr5D 412043018 412043824 806 True 1291.000000 1291 95.539000 1 807 1 chr5D.!!$R2 806
12 TraesCS3B01G178500 chr5D 429149921 429150825 904 True 425.000000 425 76.025000 1011 1933 1 chr5D.!!$R3 922
13 TraesCS3B01G178500 chr2A 194707229 194708035 806 False 1267.000000 1267 94.951000 1 811 1 chr2A.!!$F1 810
14 TraesCS3B01G178500 chr5A 545047971 545048896 925 True 420.000000 420 75.645000 990 1933 1 chr5A.!!$R3 943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 553 0.108585 TCTTGAGGCGGCTTCAAACT 59.891 50.0 24.74 1.43 34.41 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2476 3275 0.039618 GGGGTCAAAGGAGATGGCAA 59.96 55.0 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.244526 TGAACTTCAGCTGGCAGATACAA 60.245 43.478 20.86 7.42 0.00 2.41
328 329 2.095768 AGTGAAAATCAACGTGGATGCG 60.096 45.455 6.11 0.00 37.94 4.73
426 428 0.465824 AGCTGGATTCTGCCTCATGC 60.466 55.000 0.00 0.00 38.41 4.06
432 434 1.474077 GATTCTGCCTCATGCCGTTTT 59.526 47.619 0.00 0.00 40.16 2.43
488 490 4.905429 TGGACTTATTCTTGCTGCTAACA 58.095 39.130 0.00 0.00 0.00 2.41
551 553 0.108585 TCTTGAGGCGGCTTCAAACT 59.891 50.000 24.74 1.43 34.41 2.66
552 554 0.954452 CTTGAGGCGGCTTCAAACTT 59.046 50.000 24.74 0.00 34.41 2.66
571 573 2.111999 TAGAGGCATACATGGGCGGC 62.112 60.000 0.00 0.00 35.71 6.53
611 613 3.374988 CGAAGCAACAATCTTGGCTATGA 59.625 43.478 0.00 0.00 35.11 2.15
706 708 9.593134 CATTGCTTTAGTACTAGAGTTTCAGAT 57.407 33.333 18.76 5.08 0.00 2.90
743 745 3.265995 TCCCCCTGACTTTATTCTTCCAC 59.734 47.826 0.00 0.00 0.00 4.02
756 758 8.804688 TTTATTCTTCCACAAATTGTAAACGG 57.195 30.769 0.00 0.00 0.00 4.44
786 788 7.706607 GGCCATCATTTGAGGAATAAAAGTTAC 59.293 37.037 0.00 0.00 0.00 2.50
869 876 5.467035 AAAACAAGAGAGAGAGAGACTGG 57.533 43.478 0.00 0.00 0.00 4.00
928 939 4.507512 GGGTCCATTCTGATTTATCCTCCC 60.508 50.000 0.00 0.00 0.00 4.30
954 965 3.064820 CGAAATTAGCGCACCCATTTACT 59.935 43.478 11.47 0.00 0.00 2.24
955 966 4.271533 CGAAATTAGCGCACCCATTTACTA 59.728 41.667 11.47 0.00 0.00 1.82
956 967 5.494632 AAATTAGCGCACCCATTTACTAC 57.505 39.130 11.47 0.00 0.00 2.73
1084 1095 2.518587 AGATCGATGCCGTCCCGA 60.519 61.111 0.54 0.00 37.05 5.14
1208 1219 1.318158 GGACGCTTCCTTCTCCGGTA 61.318 60.000 0.00 0.00 39.13 4.02
1324 1344 2.553765 CTTCGTCCCCTCCTCCTCGA 62.554 65.000 0.00 0.00 0.00 4.04
1424 1444 3.744719 CGCCGACTTCTGGGACGA 61.745 66.667 0.00 0.00 0.00 4.20
1438 1458 0.103937 GGACGATCTCCTGCTCTTGG 59.896 60.000 0.00 0.00 35.89 3.61
1617 1646 3.633361 CCTGTCCAACTTCAGGGTC 57.367 57.895 3.58 0.00 45.11 4.46
1732 1761 2.125147 GCATGGCAGTCTACGGCA 60.125 61.111 7.51 5.77 43.74 5.69
1783 1812 2.177594 CTTCCACTTCGCAGGGAGCT 62.178 60.000 0.00 0.00 42.61 4.09
1789 1818 1.304962 TTCGCAGGGAGCTCCTACA 60.305 57.895 31.36 9.31 46.12 2.74
1867 1896 0.393267 CGAGTTCTCCTCCTCCGTCT 60.393 60.000 0.00 0.00 36.82 4.18
1963 2747 1.133450 TCCGAGCCTGCTTATCCTAGT 60.133 52.381 0.00 0.00 0.00 2.57
1964 2748 1.689273 CCGAGCCTGCTTATCCTAGTT 59.311 52.381 0.00 0.00 0.00 2.24
1965 2749 2.288518 CCGAGCCTGCTTATCCTAGTTC 60.289 54.545 0.00 0.00 0.00 3.01
1966 2750 2.288518 CGAGCCTGCTTATCCTAGTTCC 60.289 54.545 0.00 0.00 0.00 3.62
1967 2751 2.969262 GAGCCTGCTTATCCTAGTTCCT 59.031 50.000 0.00 0.00 0.00 3.36
1968 2752 4.153411 GAGCCTGCTTATCCTAGTTCCTA 58.847 47.826 0.00 0.00 0.00 2.94
1969 2753 4.156477 AGCCTGCTTATCCTAGTTCCTAG 58.844 47.826 0.00 0.00 34.16 3.02
1975 2759 1.333177 ATCCTAGTTCCTAGCTGCCG 58.667 55.000 0.00 0.00 33.12 5.69
1978 2762 2.685387 CTAGTTCCTAGCTGCCGCGG 62.685 65.000 24.05 24.05 42.32 6.46
2058 2847 4.022935 AGCATCATACTTGTGTGTTTGTGG 60.023 41.667 0.00 0.00 0.00 4.17
2061 2850 4.527944 TCATACTTGTGTGTTTGTGGGAA 58.472 39.130 0.00 0.00 0.00 3.97
2062 2851 4.950475 TCATACTTGTGTGTTTGTGGGAAA 59.050 37.500 0.00 0.00 0.00 3.13
2063 2852 5.419155 TCATACTTGTGTGTTTGTGGGAAAA 59.581 36.000 0.00 0.00 0.00 2.29
2189 2979 7.824289 TGTTTGGTTATTGTTTTGGACATGAAA 59.176 29.630 0.00 0.00 38.26 2.69
2190 2980 7.778470 TTGGTTATTGTTTTGGACATGAAAC 57.222 32.000 0.00 0.00 38.26 2.78
2191 2981 7.118496 TGGTTATTGTTTTGGACATGAAACT 57.882 32.000 0.00 0.00 38.26 2.66
2192 2982 6.983307 TGGTTATTGTTTTGGACATGAAACTG 59.017 34.615 0.00 0.00 38.26 3.16
2193 2983 6.423604 GGTTATTGTTTTGGACATGAAACTGG 59.576 38.462 0.00 0.00 38.26 4.00
2194 2984 5.867903 ATTGTTTTGGACATGAAACTGGA 57.132 34.783 0.00 0.00 38.26 3.86
2195 2985 4.916983 TGTTTTGGACATGAAACTGGAG 57.083 40.909 0.00 0.00 36.84 3.86
2196 2986 3.068024 TGTTTTGGACATGAAACTGGAGC 59.932 43.478 0.00 0.00 36.84 4.70
2197 2987 2.655090 TTGGACATGAAACTGGAGCA 57.345 45.000 0.00 0.00 0.00 4.26
2198 2988 2.655090 TGGACATGAAACTGGAGCAA 57.345 45.000 0.00 0.00 0.00 3.91
2199 2989 2.229792 TGGACATGAAACTGGAGCAAC 58.770 47.619 0.00 0.00 0.00 4.17
2200 2990 1.197721 GGACATGAAACTGGAGCAACG 59.802 52.381 0.00 0.00 0.00 4.10
2201 2991 2.143122 GACATGAAACTGGAGCAACGA 58.857 47.619 0.00 0.00 0.00 3.85
2202 2992 2.548057 GACATGAAACTGGAGCAACGAA 59.452 45.455 0.00 0.00 0.00 3.85
2203 2993 2.290641 ACATGAAACTGGAGCAACGAAC 59.709 45.455 0.00 0.00 0.00 3.95
2204 2994 2.325583 TGAAACTGGAGCAACGAACT 57.674 45.000 0.00 0.00 0.00 3.01
2205 2995 1.939934 TGAAACTGGAGCAACGAACTG 59.060 47.619 0.00 0.00 0.00 3.16
2206 2996 2.210116 GAAACTGGAGCAACGAACTGA 58.790 47.619 0.00 0.00 0.00 3.41
2207 2997 2.325583 AACTGGAGCAACGAACTGAA 57.674 45.000 0.00 0.00 0.00 3.02
2208 2998 1.871080 ACTGGAGCAACGAACTGAAG 58.129 50.000 0.00 0.00 0.00 3.02
2209 2999 1.139058 ACTGGAGCAACGAACTGAAGT 59.861 47.619 0.00 0.00 0.00 3.01
2210 3000 2.213499 CTGGAGCAACGAACTGAAGTT 58.787 47.619 0.00 0.00 41.64 2.66
2211 3001 2.614057 CTGGAGCAACGAACTGAAGTTT 59.386 45.455 0.00 0.00 38.56 2.66
2212 3002 3.799366 TGGAGCAACGAACTGAAGTTTA 58.201 40.909 0.00 0.00 38.56 2.01
2213 3003 4.385825 TGGAGCAACGAACTGAAGTTTAT 58.614 39.130 0.00 0.00 38.56 1.40
2214 3004 4.819630 TGGAGCAACGAACTGAAGTTTATT 59.180 37.500 0.00 0.00 38.56 1.40
2215 3005 5.147162 GGAGCAACGAACTGAAGTTTATTG 58.853 41.667 12.55 12.55 38.56 1.90
2216 3006 5.277828 GGAGCAACGAACTGAAGTTTATTGT 60.278 40.000 15.84 4.77 38.56 2.71
2217 3007 6.131544 AGCAACGAACTGAAGTTTATTGTT 57.868 33.333 15.84 10.65 38.56 2.83
2218 3008 6.199393 AGCAACGAACTGAAGTTTATTGTTC 58.801 36.000 15.84 0.00 38.56 3.18
2219 3009 6.038271 AGCAACGAACTGAAGTTTATTGTTCT 59.962 34.615 15.84 7.71 38.56 3.01
2220 3010 7.225931 AGCAACGAACTGAAGTTTATTGTTCTA 59.774 33.333 15.84 0.00 38.56 2.10
2221 3011 8.015658 GCAACGAACTGAAGTTTATTGTTCTAT 58.984 33.333 15.84 0.00 38.56 1.98
2222 3012 9.878599 CAACGAACTGAAGTTTATTGTTCTATT 57.121 29.630 0.00 0.00 38.56 1.73
2223 3013 9.878599 AACGAACTGAAGTTTATTGTTCTATTG 57.121 29.630 0.00 0.00 38.56 1.90
2224 3014 8.015658 ACGAACTGAAGTTTATTGTTCTATTGC 58.984 33.333 0.00 0.00 38.56 3.56
2225 3015 7.481798 CGAACTGAAGTTTATTGTTCTATTGCC 59.518 37.037 0.00 0.00 38.56 4.52
2226 3016 6.842163 ACTGAAGTTTATTGTTCTATTGCCG 58.158 36.000 0.00 0.00 0.00 5.69
2227 3017 6.430000 ACTGAAGTTTATTGTTCTATTGCCGT 59.570 34.615 0.00 0.00 0.00 5.68
2228 3018 7.604927 ACTGAAGTTTATTGTTCTATTGCCGTA 59.395 33.333 0.00 0.00 0.00 4.02
2229 3019 7.745015 TGAAGTTTATTGTTCTATTGCCGTAC 58.255 34.615 0.00 0.00 0.00 3.67
2230 3020 7.388224 TGAAGTTTATTGTTCTATTGCCGTACA 59.612 33.333 0.00 0.00 0.00 2.90
2231 3021 7.068692 AGTTTATTGTTCTATTGCCGTACAC 57.931 36.000 0.00 0.00 0.00 2.90
2232 3022 6.877322 AGTTTATTGTTCTATTGCCGTACACT 59.123 34.615 0.00 0.00 0.00 3.55
2233 3023 7.389607 AGTTTATTGTTCTATTGCCGTACACTT 59.610 33.333 0.00 0.00 0.00 3.16
2234 3024 7.675962 TTATTGTTCTATTGCCGTACACTTT 57.324 32.000 0.00 0.00 0.00 2.66
2235 3025 6.569179 ATTGTTCTATTGCCGTACACTTTT 57.431 33.333 0.00 0.00 0.00 2.27
2236 3026 7.675962 ATTGTTCTATTGCCGTACACTTTTA 57.324 32.000 0.00 0.00 0.00 1.52
2237 3027 6.715344 TGTTCTATTGCCGTACACTTTTAG 57.285 37.500 0.00 0.00 0.00 1.85
2238 3028 6.457355 TGTTCTATTGCCGTACACTTTTAGA 58.543 36.000 0.00 0.00 0.00 2.10
2239 3029 7.101054 TGTTCTATTGCCGTACACTTTTAGAT 58.899 34.615 0.00 0.00 0.00 1.98
2240 3030 7.064134 TGTTCTATTGCCGTACACTTTTAGATG 59.936 37.037 0.00 0.00 0.00 2.90
2241 3031 6.636705 TCTATTGCCGTACACTTTTAGATGT 58.363 36.000 0.00 0.00 0.00 3.06
2266 3056 6.640518 TCTCGCCTTCAGTTTACTTTCATAT 58.359 36.000 0.00 0.00 0.00 1.78
2267 3057 7.778083 TCTCGCCTTCAGTTTACTTTCATATA 58.222 34.615 0.00 0.00 0.00 0.86
2299 3090 9.581099 GAAATTGTTTGTTTTGAGAAGGTCTTA 57.419 29.630 0.00 0.00 0.00 2.10
2358 3149 1.089920 GTTGTGCCACTATCCAGCTG 58.910 55.000 6.78 6.78 0.00 4.24
2379 3173 5.021033 TGAATGTGAAGGTTGCAACAAAT 57.979 34.783 29.55 15.43 0.00 2.32
2424 3218 2.050691 CAAACCGTGCGAAGAAATTGG 58.949 47.619 0.00 0.00 0.00 3.16
2430 3224 1.202114 GTGCGAAGAAATTGGGCATGA 59.798 47.619 0.00 0.00 35.88 3.07
2432 3226 1.202336 GCGAAGAAATTGGGCATGAGG 60.202 52.381 0.00 0.00 0.00 3.86
2445 3244 0.445436 CATGAGGCAGTGAAAGACGC 59.555 55.000 0.00 0.00 0.00 5.19
2453 3252 0.456995 AGTGAAAGACGCTAGCGCTC 60.457 55.000 35.63 28.48 44.19 5.03
2463 3262 0.802222 GCTAGCGCTCGTTGTCATCA 60.802 55.000 16.34 0.00 0.00 3.07
2475 3274 0.247460 TGTCATCAGCTCAACCCTCG 59.753 55.000 0.00 0.00 0.00 4.63
2476 3275 0.247736 GTCATCAGCTCAACCCTCGT 59.752 55.000 0.00 0.00 0.00 4.18
2477 3276 0.976641 TCATCAGCTCAACCCTCGTT 59.023 50.000 0.00 0.00 0.00 3.85
2507 3306 2.434359 GACCCCGTTCTTCGCTGG 60.434 66.667 0.00 0.00 38.35 4.85
2535 3334 1.004277 ACCATTTGGCCACGTAGTCAT 59.996 47.619 3.88 0.00 37.41 3.06
2536 3335 2.091541 CCATTTGGCCACGTAGTCATT 58.908 47.619 3.88 0.00 41.61 2.57
2537 3336 2.159393 CCATTTGGCCACGTAGTCATTG 60.159 50.000 3.88 0.00 41.61 2.82
2548 3347 6.363626 GCCACGTAGTCATTGATGAATAGTAG 59.636 42.308 1.75 0.89 41.61 2.57
2550 3349 7.426410 CACGTAGTCATTGATGAATAGTAGGT 58.574 38.462 1.75 0.00 41.61 3.08
2553 3352 7.255486 CGTAGTCATTGATGAATAGTAGGTCCA 60.255 40.741 1.75 0.00 37.94 4.02
2554 3353 6.821388 AGTCATTGATGAATAGTAGGTCCAC 58.179 40.000 0.00 0.00 38.75 4.02
2555 3354 5.992217 GTCATTGATGAATAGTAGGTCCACC 59.008 44.000 0.00 0.00 38.75 4.61
2556 3355 5.665360 TCATTGATGAATAGTAGGTCCACCA 59.335 40.000 0.00 0.00 34.18 4.17
2557 3356 5.614324 TTGATGAATAGTAGGTCCACCAG 57.386 43.478 0.00 0.00 38.89 4.00
2558 3357 3.388024 TGATGAATAGTAGGTCCACCAGC 59.612 47.826 0.00 0.00 38.89 4.85
2559 3358 2.827755 TGAATAGTAGGTCCACCAGCA 58.172 47.619 0.00 0.00 38.89 4.41
2560 3359 3.178046 TGAATAGTAGGTCCACCAGCAA 58.822 45.455 0.00 0.00 38.89 3.91
2561 3360 3.055385 TGAATAGTAGGTCCACCAGCAAC 60.055 47.826 0.00 0.00 38.89 4.17
2562 3361 2.018355 TAGTAGGTCCACCAGCAACA 57.982 50.000 0.00 0.00 38.89 3.33
2563 3362 0.396811 AGTAGGTCCACCAGCAACAC 59.603 55.000 0.00 0.00 38.89 3.32
2564 3363 0.396811 GTAGGTCCACCAGCAACACT 59.603 55.000 0.00 0.00 38.89 3.55
2565 3364 0.685097 TAGGTCCACCAGCAACACTC 59.315 55.000 0.00 0.00 38.89 3.51
2566 3365 1.961277 GGTCCACCAGCAACACTCG 60.961 63.158 0.00 0.00 35.64 4.18
2567 3366 1.069090 GTCCACCAGCAACACTCGA 59.931 57.895 0.00 0.00 0.00 4.04
2568 3367 0.946221 GTCCACCAGCAACACTCGAG 60.946 60.000 11.84 11.84 0.00 4.04
2569 3368 1.069765 CCACCAGCAACACTCGAGT 59.930 57.895 13.58 13.58 0.00 4.18
2570 3369 0.946221 CCACCAGCAACACTCGAGTC 60.946 60.000 16.96 4.27 0.00 3.36
2571 3370 0.946221 CACCAGCAACACTCGAGTCC 60.946 60.000 16.96 4.54 0.00 3.85
2572 3371 1.367471 CCAGCAACACTCGAGTCCA 59.633 57.895 16.96 0.00 0.00 4.02
2573 3372 0.668706 CCAGCAACACTCGAGTCCAG 60.669 60.000 16.96 7.53 0.00 3.86
2574 3373 1.005630 AGCAACACTCGAGTCCAGC 60.006 57.895 16.96 18.54 0.00 4.85
2575 3374 2.375766 GCAACACTCGAGTCCAGCG 61.376 63.158 16.96 6.71 0.00 5.18
2576 3375 1.734477 CAACACTCGAGTCCAGCGG 60.734 63.158 16.96 5.90 0.00 5.52
2577 3376 2.201022 AACACTCGAGTCCAGCGGT 61.201 57.895 16.96 6.63 0.00 5.68
2578 3377 0.892358 AACACTCGAGTCCAGCGGTA 60.892 55.000 16.96 0.00 0.00 4.02
2579 3378 1.136984 CACTCGAGTCCAGCGGTAC 59.863 63.158 16.96 0.00 0.00 3.34
2580 3379 1.303074 ACTCGAGTCCAGCGGTACA 60.303 57.895 13.58 0.00 0.00 2.90
2581 3380 0.680280 ACTCGAGTCCAGCGGTACAT 60.680 55.000 13.58 0.00 0.00 2.29
2582 3381 0.248661 CTCGAGTCCAGCGGTACATG 60.249 60.000 3.62 0.00 0.00 3.21
2583 3382 1.878522 CGAGTCCAGCGGTACATGC 60.879 63.158 0.00 0.00 0.00 4.06
2584 3383 1.878522 GAGTCCAGCGGTACATGCG 60.879 63.158 0.00 0.00 37.44 4.73
2590 3389 1.200483 CAGCGGTACATGCGAGTAAG 58.800 55.000 0.00 0.00 37.44 2.34
2594 3393 0.874607 GGTACATGCGAGTAAGGGCG 60.875 60.000 0.00 0.00 0.00 6.13
2596 3395 0.101759 TACATGCGAGTAAGGGCGTC 59.898 55.000 0.00 0.00 0.00 5.19
2602 3401 1.516603 GAGTAAGGGCGTCGCTGAC 60.517 63.158 18.11 9.82 0.00 3.51
2604 3403 3.766691 TAAGGGCGTCGCTGACCC 61.767 66.667 18.11 9.70 44.62 4.46
2618 3417 1.743394 CTGACCCGTAAATTTGCTCCC 59.257 52.381 0.00 0.00 0.00 4.30
2650 4820 9.884465 CAATTCAAAAACTGTTTAAACAAACCA 57.116 25.926 20.89 0.00 38.66 3.67
2654 4824 6.937886 AAAACTGTTTAAACAAACCAGACG 57.062 33.333 20.89 9.86 38.66 4.18
2655 4825 5.883503 AACTGTTTAAACAAACCAGACGA 57.116 34.783 20.89 0.00 38.66 4.20
2656 4826 5.479716 ACTGTTTAAACAAACCAGACGAG 57.520 39.130 20.89 8.56 38.66 4.18
2657 4827 4.201881 ACTGTTTAAACAAACCAGACGAGC 60.202 41.667 20.89 0.00 38.66 5.03
2658 4828 3.942748 TGTTTAAACAAACCAGACGAGCT 59.057 39.130 18.54 0.00 35.67 4.09
2659 4829 5.117584 TGTTTAAACAAACCAGACGAGCTA 58.882 37.500 18.54 0.00 35.67 3.32
2660 4830 5.761234 TGTTTAAACAAACCAGACGAGCTAT 59.239 36.000 18.54 0.00 35.67 2.97
2661 4831 5.856126 TTAAACAAACCAGACGAGCTATG 57.144 39.130 0.00 0.00 0.00 2.23
2662 4832 3.402628 AACAAACCAGACGAGCTATGT 57.597 42.857 0.00 0.00 0.00 2.29
2663 4833 4.530710 AACAAACCAGACGAGCTATGTA 57.469 40.909 0.00 0.00 0.00 2.29
2664 4834 4.737855 ACAAACCAGACGAGCTATGTAT 57.262 40.909 0.00 0.00 0.00 2.29
2665 4835 4.433615 ACAAACCAGACGAGCTATGTATG 58.566 43.478 6.29 6.29 0.00 2.39
2666 4836 2.802787 ACCAGACGAGCTATGTATGC 57.197 50.000 7.50 0.00 0.00 3.14
2667 4837 1.341531 ACCAGACGAGCTATGTATGCC 59.658 52.381 7.50 0.00 0.00 4.40
2668 4838 1.341209 CCAGACGAGCTATGTATGCCA 59.659 52.381 7.50 0.00 0.00 4.92
2669 4839 2.224042 CCAGACGAGCTATGTATGCCAA 60.224 50.000 7.50 0.00 0.00 4.52
2670 4840 2.797156 CAGACGAGCTATGTATGCCAAC 59.203 50.000 0.83 0.00 0.00 3.77
2671 4841 1.787155 GACGAGCTATGTATGCCAACG 59.213 52.381 0.00 0.00 0.00 4.10
2672 4842 1.136305 ACGAGCTATGTATGCCAACGT 59.864 47.619 0.00 0.00 33.41 3.99
2673 4843 1.787155 CGAGCTATGTATGCCAACGTC 59.213 52.381 0.00 0.00 0.00 4.34
2674 4844 1.787155 GAGCTATGTATGCCAACGTCG 59.213 52.381 0.00 0.00 0.00 5.12
2675 4845 0.232303 GCTATGTATGCCAACGTCGC 59.768 55.000 0.00 0.00 0.00 5.19
2676 4846 0.859232 CTATGTATGCCAACGTCGCC 59.141 55.000 5.24 0.00 0.00 5.54
2677 4847 0.462375 TATGTATGCCAACGTCGCCT 59.538 50.000 5.24 0.00 0.00 5.52
2678 4848 0.810031 ATGTATGCCAACGTCGCCTC 60.810 55.000 5.24 0.00 0.00 4.70
2679 4849 2.202690 TATGCCAACGTCGCCTCG 60.203 61.111 5.24 0.00 0.00 4.63
2680 4850 2.997075 TATGCCAACGTCGCCTCGT 61.997 57.895 5.24 0.00 46.19 4.18
2681 4851 2.877360 TATGCCAACGTCGCCTCGTC 62.877 60.000 5.24 0.00 43.38 4.20
2684 4854 4.695231 CAACGTCGCCTCGTCGGT 62.695 66.667 10.07 1.06 43.38 4.69
2685 4855 4.695231 AACGTCGCCTCGTCGGTG 62.695 66.667 10.07 1.46 43.38 4.94
2692 4862 3.691342 CCTCGTCGGTGGCCTTCA 61.691 66.667 3.32 0.00 0.00 3.02
2693 4863 2.579201 CTCGTCGGTGGCCTTCAT 59.421 61.111 3.32 0.00 0.00 2.57
2694 4864 1.811266 CTCGTCGGTGGCCTTCATG 60.811 63.158 3.32 0.00 0.00 3.07
2695 4865 2.819595 CGTCGGTGGCCTTCATGG 60.820 66.667 3.32 0.00 39.35 3.66
2696 4866 2.438434 GTCGGTGGCCTTCATGGG 60.438 66.667 3.32 0.00 36.00 4.00
2697 4867 2.609299 TCGGTGGCCTTCATGGGA 60.609 61.111 3.32 0.00 36.00 4.37
2698 4868 2.438434 CGGTGGCCTTCATGGGAC 60.438 66.667 3.32 0.00 36.00 4.46
2699 4869 2.043953 GGTGGCCTTCATGGGACC 60.044 66.667 3.32 0.00 36.00 4.46
2700 4870 2.043953 GTGGCCTTCATGGGACCC 60.044 66.667 2.45 2.45 36.00 4.46
2701 4871 2.534011 TGGCCTTCATGGGACCCA 60.534 61.111 17.73 17.73 38.19 4.51
2702 4872 2.166346 TGGCCTTCATGGGACCCAA 61.166 57.895 19.58 0.00 36.95 4.12
2703 4873 1.380380 GGCCTTCATGGGACCCAAG 60.380 63.158 19.58 14.31 36.95 3.61
2704 4874 1.380380 GCCTTCATGGGACCCAAGG 60.380 63.158 21.51 21.51 36.95 3.61
2705 4875 1.307647 CCTTCATGGGACCCAAGGG 59.692 63.158 19.58 8.27 36.95 3.95
2715 4885 3.006728 CCCAAGGGTGGCGGTCTA 61.007 66.667 0.00 0.00 44.46 2.59
2716 4886 2.267961 CCAAGGGTGGCGGTCTAC 59.732 66.667 0.00 0.00 38.35 2.59
2717 4887 2.267961 CAAGGGTGGCGGTCTACC 59.732 66.667 0.00 0.00 36.21 3.18
2718 4888 2.203877 AAGGGTGGCGGTCTACCA 60.204 61.111 0.00 0.00 38.74 3.25
2719 4889 1.615424 AAGGGTGGCGGTCTACCAT 60.615 57.895 0.00 0.00 39.95 3.55
2720 4890 1.910580 AAGGGTGGCGGTCTACCATG 61.911 60.000 0.00 0.00 39.95 3.66
2721 4891 2.666098 GGGTGGCGGTCTACCATGT 61.666 63.158 0.00 0.00 39.95 3.21
2722 4892 1.298667 GGTGGCGGTCTACCATGTT 59.701 57.895 0.00 0.00 39.95 2.71
2723 4893 0.743345 GGTGGCGGTCTACCATGTTC 60.743 60.000 0.00 0.00 39.95 3.18
2724 4894 0.249398 GTGGCGGTCTACCATGTTCT 59.751 55.000 0.00 0.00 39.95 3.01
2725 4895 1.479323 GTGGCGGTCTACCATGTTCTA 59.521 52.381 0.00 0.00 39.95 2.10
2726 4896 1.479323 TGGCGGTCTACCATGTTCTAC 59.521 52.381 0.00 0.00 35.14 2.59
2727 4897 1.755380 GGCGGTCTACCATGTTCTACT 59.245 52.381 0.00 0.00 35.14 2.57
2728 4898 2.167900 GGCGGTCTACCATGTTCTACTT 59.832 50.000 0.00 0.00 35.14 2.24
2729 4899 3.445857 GCGGTCTACCATGTTCTACTTC 58.554 50.000 0.00 0.00 35.14 3.01
2730 4900 3.737355 GCGGTCTACCATGTTCTACTTCC 60.737 52.174 0.00 0.00 35.14 3.46
2731 4901 3.488721 CGGTCTACCATGTTCTACTTCCG 60.489 52.174 0.00 0.00 35.14 4.30
2732 4902 3.698040 GGTCTACCATGTTCTACTTCCGA 59.302 47.826 0.00 0.00 35.64 4.55
2733 4903 4.341520 GGTCTACCATGTTCTACTTCCGAT 59.658 45.833 0.00 0.00 35.64 4.18
2734 4904 5.282510 GTCTACCATGTTCTACTTCCGATG 58.717 45.833 0.00 0.00 0.00 3.84
2735 4905 5.067413 GTCTACCATGTTCTACTTCCGATGA 59.933 44.000 0.00 0.00 0.00 2.92
2736 4906 5.833667 TCTACCATGTTCTACTTCCGATGAT 59.166 40.000 0.00 0.00 0.00 2.45
2737 4907 4.697514 ACCATGTTCTACTTCCGATGATG 58.302 43.478 0.00 0.00 0.00 3.07
2738 4908 4.060900 CCATGTTCTACTTCCGATGATGG 58.939 47.826 0.00 0.00 0.00 3.51
2739 4909 3.179443 TGTTCTACTTCCGATGATGGC 57.821 47.619 0.00 0.00 0.00 4.40
2740 4910 2.128035 GTTCTACTTCCGATGATGGCG 58.872 52.381 0.00 0.00 0.00 5.69
2777 4947 4.845580 CCGCCGCCTTGCTGATCT 62.846 66.667 0.00 0.00 0.00 2.75
2778 4948 3.267860 CGCCGCCTTGCTGATCTC 61.268 66.667 0.00 0.00 0.00 2.75
2779 4949 2.899339 GCCGCCTTGCTGATCTCC 60.899 66.667 0.00 0.00 0.00 3.71
2780 4950 2.587194 CCGCCTTGCTGATCTCCG 60.587 66.667 0.00 0.00 0.00 4.63
2781 4951 3.267860 CGCCTTGCTGATCTCCGC 61.268 66.667 0.00 0.00 0.00 5.54
2782 4952 3.267860 GCCTTGCTGATCTCCGCG 61.268 66.667 0.00 0.00 0.00 6.46
2783 4953 2.496341 CCTTGCTGATCTCCGCGA 59.504 61.111 8.23 0.00 0.00 5.87
2784 4954 1.153568 CCTTGCTGATCTCCGCGAA 60.154 57.895 8.23 0.00 0.00 4.70
2785 4955 1.150567 CCTTGCTGATCTCCGCGAAG 61.151 60.000 8.23 0.00 0.00 3.79
2800 4970 2.472355 GAAGCCGGCTTCTTTCTCC 58.528 57.895 46.69 28.62 46.38 3.71
2801 4971 1.362406 GAAGCCGGCTTCTTTCTCCG 61.362 60.000 46.69 1.83 46.38 4.63
2802 4972 3.500642 GCCGGCTTCTTTCTCCGC 61.501 66.667 22.15 0.00 41.68 5.54
2803 4973 2.820037 CCGGCTTCTTTCTCCGCC 60.820 66.667 0.00 0.00 41.68 6.13
2805 4975 2.820037 GGCTTCTTTCTCCGCCGG 60.820 66.667 0.00 0.00 32.22 6.13
2806 4976 3.500642 GCTTCTTTCTCCGCCGGC 61.501 66.667 19.07 19.07 0.00 6.13
2807 4977 2.047274 CTTCTTTCTCCGCCGGCA 60.047 61.111 28.98 6.80 0.00 5.69
2808 4978 2.047274 TTCTTTCTCCGCCGGCAG 60.047 61.111 28.98 16.96 0.00 4.85
2809 4979 3.605749 TTCTTTCTCCGCCGGCAGG 62.606 63.158 28.98 26.91 41.62 4.85
2828 4998 2.740826 CACGGTCCCGCGAATGTT 60.741 61.111 8.23 0.00 44.19 2.71
2829 4999 2.740826 ACGGTCCCGCGAATGTTG 60.741 61.111 8.23 0.00 44.19 3.33
2830 5000 2.433491 CGGTCCCGCGAATGTTGA 60.433 61.111 8.23 0.00 0.00 3.18
2831 5001 2.736682 CGGTCCCGCGAATGTTGAC 61.737 63.158 8.23 4.02 0.00 3.18
2832 5002 2.736682 GGTCCCGCGAATGTTGACG 61.737 63.158 8.23 0.00 0.00 4.35
2833 5003 2.433491 TCCCGCGAATGTTGACGG 60.433 61.111 8.23 0.00 45.21 4.79
2834 5004 4.160635 CCCGCGAATGTTGACGGC 62.161 66.667 8.23 0.00 44.29 5.68
2835 5005 3.118454 CCGCGAATGTTGACGGCT 61.118 61.111 8.23 0.00 39.08 5.52
2836 5006 2.096406 CGCGAATGTTGACGGCTG 59.904 61.111 0.00 0.00 0.00 4.85
2837 5007 2.667318 CGCGAATGTTGACGGCTGT 61.667 57.895 0.00 0.00 0.00 4.40
2838 5008 1.348538 CGCGAATGTTGACGGCTGTA 61.349 55.000 0.00 0.00 0.00 2.74
2839 5009 0.793861 GCGAATGTTGACGGCTGTAA 59.206 50.000 0.00 0.00 0.00 2.41
2840 5010 1.463528 GCGAATGTTGACGGCTGTAAC 60.464 52.381 0.00 4.70 0.00 2.50
2841 5011 1.201769 CGAATGTTGACGGCTGTAACG 60.202 52.381 0.00 0.00 37.36 3.18
2842 5012 0.515564 AATGTTGACGGCTGTAACGC 59.484 50.000 0.00 0.00 34.00 4.84
2843 5013 1.296056 ATGTTGACGGCTGTAACGCC 61.296 55.000 0.00 0.00 46.68 5.68
2852 5022 3.729862 GGCTGTAACGCCTCTATAACT 57.270 47.619 0.00 0.00 46.63 2.24
2853 5023 4.056092 GGCTGTAACGCCTCTATAACTT 57.944 45.455 0.00 0.00 46.63 2.66
2854 5024 5.192327 GGCTGTAACGCCTCTATAACTTA 57.808 43.478 0.00 0.00 46.63 2.24
2855 5025 5.221130 GGCTGTAACGCCTCTATAACTTAG 58.779 45.833 0.00 0.00 46.63 2.18
2856 5026 4.680567 GCTGTAACGCCTCTATAACTTAGC 59.319 45.833 0.00 0.00 0.00 3.09
2857 5027 5.192327 TGTAACGCCTCTATAACTTAGCC 57.808 43.478 0.00 0.00 0.00 3.93
2858 5028 4.646040 TGTAACGCCTCTATAACTTAGCCA 59.354 41.667 0.00 0.00 0.00 4.75
2859 5029 4.748277 AACGCCTCTATAACTTAGCCAA 57.252 40.909 0.00 0.00 0.00 4.52
2860 5030 4.056092 ACGCCTCTATAACTTAGCCAAC 57.944 45.455 0.00 0.00 0.00 3.77
2861 5031 3.050619 CGCCTCTATAACTTAGCCAACG 58.949 50.000 0.00 0.00 0.00 4.10
2862 5032 3.490419 CGCCTCTATAACTTAGCCAACGT 60.490 47.826 0.00 0.00 0.00 3.99
2863 5033 3.802685 GCCTCTATAACTTAGCCAACGTG 59.197 47.826 0.00 0.00 0.00 4.49
2864 5034 4.679905 GCCTCTATAACTTAGCCAACGTGT 60.680 45.833 0.00 0.00 0.00 4.49
2865 5035 5.416947 CCTCTATAACTTAGCCAACGTGTT 58.583 41.667 0.00 0.00 0.00 3.32
2866 5036 6.567050 CCTCTATAACTTAGCCAACGTGTTA 58.433 40.000 0.00 0.00 0.00 2.41
2867 5037 7.208080 CCTCTATAACTTAGCCAACGTGTTAT 58.792 38.462 9.33 9.33 37.51 1.89
2868 5038 7.381678 CCTCTATAACTTAGCCAACGTGTTATC 59.618 40.741 8.06 0.00 35.97 1.75
2869 5039 7.205297 TCTATAACTTAGCCAACGTGTTATCC 58.795 38.462 8.06 0.00 35.97 2.59
2870 5040 2.981898 ACTTAGCCAACGTGTTATCCC 58.018 47.619 0.00 0.00 0.00 3.85
2871 5041 2.285977 CTTAGCCAACGTGTTATCCCC 58.714 52.381 0.00 0.00 0.00 4.81
2872 5042 1.575419 TAGCCAACGTGTTATCCCCT 58.425 50.000 0.00 0.00 0.00 4.79
2873 5043 0.252197 AGCCAACGTGTTATCCCCTC 59.748 55.000 0.00 0.00 0.00 4.30
2874 5044 0.252197 GCCAACGTGTTATCCCCTCT 59.748 55.000 0.00 0.00 0.00 3.69
2875 5045 1.483415 GCCAACGTGTTATCCCCTCTA 59.517 52.381 0.00 0.00 0.00 2.43
2876 5046 2.093341 GCCAACGTGTTATCCCCTCTAA 60.093 50.000 0.00 0.00 0.00 2.10
2877 5047 3.433173 GCCAACGTGTTATCCCCTCTAAT 60.433 47.826 0.00 0.00 0.00 1.73
2878 5048 4.777463 CCAACGTGTTATCCCCTCTAATT 58.223 43.478 0.00 0.00 0.00 1.40
2879 5049 5.685599 GCCAACGTGTTATCCCCTCTAATTA 60.686 44.000 0.00 0.00 0.00 1.40
2880 5050 6.531021 CCAACGTGTTATCCCCTCTAATTAT 58.469 40.000 0.00 0.00 0.00 1.28
2881 5051 6.426937 CCAACGTGTTATCCCCTCTAATTATG 59.573 42.308 0.00 0.00 0.00 1.90
2882 5052 5.548406 ACGTGTTATCCCCTCTAATTATGC 58.452 41.667 0.00 0.00 0.00 3.14
2883 5053 4.935808 CGTGTTATCCCCTCTAATTATGCC 59.064 45.833 0.00 0.00 0.00 4.40
2884 5054 5.512404 CGTGTTATCCCCTCTAATTATGCCA 60.512 44.000 0.00 0.00 0.00 4.92
2885 5055 6.485171 GTGTTATCCCCTCTAATTATGCCAT 58.515 40.000 0.00 0.00 0.00 4.40
2886 5056 6.375455 GTGTTATCCCCTCTAATTATGCCATG 59.625 42.308 0.00 0.00 0.00 3.66
2887 5057 6.045459 TGTTATCCCCTCTAATTATGCCATGT 59.955 38.462 0.00 0.00 0.00 3.21
2888 5058 4.640771 TCCCCTCTAATTATGCCATGTC 57.359 45.455 0.00 0.00 0.00 3.06
2889 5059 3.980022 TCCCCTCTAATTATGCCATGTCA 59.020 43.478 0.00 0.00 0.00 3.58
2890 5060 4.603171 TCCCCTCTAATTATGCCATGTCAT 59.397 41.667 0.00 0.00 0.00 3.06
2891 5061 4.946157 CCCCTCTAATTATGCCATGTCATC 59.054 45.833 0.00 0.00 0.00 2.92
2892 5062 5.280882 CCCCTCTAATTATGCCATGTCATCT 60.281 44.000 0.00 0.00 0.00 2.90
2893 5063 5.646793 CCCTCTAATTATGCCATGTCATCTG 59.353 44.000 0.00 0.00 0.00 2.90
2894 5064 6.236409 CCTCTAATTATGCCATGTCATCTGT 58.764 40.000 0.00 0.00 0.00 3.41
2895 5065 6.713903 CCTCTAATTATGCCATGTCATCTGTT 59.286 38.462 0.00 0.00 0.00 3.16
2896 5066 7.230108 CCTCTAATTATGCCATGTCATCTGTTT 59.770 37.037 0.00 0.00 0.00 2.83
2897 5067 8.523915 TCTAATTATGCCATGTCATCTGTTTT 57.476 30.769 0.00 0.00 0.00 2.43
2898 5068 8.407832 TCTAATTATGCCATGTCATCTGTTTTG 58.592 33.333 0.00 0.00 0.00 2.44
2899 5069 2.728690 TGCCATGTCATCTGTTTTGC 57.271 45.000 0.00 0.00 0.00 3.68
2900 5070 1.962100 TGCCATGTCATCTGTTTTGCA 59.038 42.857 0.00 0.00 0.00 4.08
2901 5071 2.364647 TGCCATGTCATCTGTTTTGCAA 59.635 40.909 0.00 0.00 0.00 4.08
2902 5072 3.007074 TGCCATGTCATCTGTTTTGCAAT 59.993 39.130 0.00 0.00 0.00 3.56
2903 5073 4.220163 TGCCATGTCATCTGTTTTGCAATA 59.780 37.500 0.00 0.00 0.00 1.90
2904 5074 5.170021 GCCATGTCATCTGTTTTGCAATAA 58.830 37.500 0.00 0.00 0.00 1.40
2905 5075 5.813672 GCCATGTCATCTGTTTTGCAATAAT 59.186 36.000 0.00 0.00 0.00 1.28
2906 5076 6.237996 GCCATGTCATCTGTTTTGCAATAATG 60.238 38.462 0.00 0.00 0.00 1.90
2907 5077 7.036829 CCATGTCATCTGTTTTGCAATAATGA 58.963 34.615 0.00 0.00 0.00 2.57
2908 5078 7.546316 CCATGTCATCTGTTTTGCAATAATGAA 59.454 33.333 0.00 0.00 0.00 2.57
2909 5079 9.093970 CATGTCATCTGTTTTGCAATAATGAAT 57.906 29.630 0.00 0.00 0.00 2.57
2910 5080 8.468720 TGTCATCTGTTTTGCAATAATGAATG 57.531 30.769 0.00 1.15 0.00 2.67
2911 5081 7.063662 TGTCATCTGTTTTGCAATAATGAATGC 59.936 33.333 0.00 0.00 42.86 3.56
2912 5082 6.535865 TCATCTGTTTTGCAATAATGAATGCC 59.464 34.615 0.00 0.00 41.87 4.40
2913 5083 5.791666 TCTGTTTTGCAATAATGAATGCCA 58.208 33.333 0.00 0.00 41.87 4.92
2914 5084 5.638657 TCTGTTTTGCAATAATGAATGCCAC 59.361 36.000 0.00 0.00 41.87 5.01
2915 5085 5.549347 TGTTTTGCAATAATGAATGCCACT 58.451 33.333 0.00 0.00 41.87 4.00
2916 5086 5.996513 TGTTTTGCAATAATGAATGCCACTT 59.003 32.000 0.00 0.00 41.87 3.16
2917 5087 6.073167 TGTTTTGCAATAATGAATGCCACTTG 60.073 34.615 0.00 0.00 41.87 3.16
2918 5088 4.804868 TGCAATAATGAATGCCACTTGT 57.195 36.364 0.00 0.00 41.87 3.16
2919 5089 4.746729 TGCAATAATGAATGCCACTTGTC 58.253 39.130 0.00 0.00 41.87 3.18
2920 5090 4.114794 GCAATAATGAATGCCACTTGTCC 58.885 43.478 0.00 0.00 36.56 4.02
2921 5091 4.685924 CAATAATGAATGCCACTTGTCCC 58.314 43.478 0.00 0.00 0.00 4.46
2922 5092 2.307496 AATGAATGCCACTTGTCCCA 57.693 45.000 0.00 0.00 0.00 4.37
2923 5093 2.307496 ATGAATGCCACTTGTCCCAA 57.693 45.000 0.00 0.00 0.00 4.12
2924 5094 2.079170 TGAATGCCACTTGTCCCAAA 57.921 45.000 0.00 0.00 0.00 3.28
2925 5095 2.607499 TGAATGCCACTTGTCCCAAAT 58.393 42.857 0.00 0.00 0.00 2.32
2926 5096 2.562298 TGAATGCCACTTGTCCCAAATC 59.438 45.455 0.00 0.00 0.00 2.17
2927 5097 2.307496 ATGCCACTTGTCCCAAATCA 57.693 45.000 0.00 0.00 0.00 2.57
2928 5098 2.079170 TGCCACTTGTCCCAAATCAA 57.921 45.000 0.00 0.00 0.00 2.57
2929 5099 2.392662 TGCCACTTGTCCCAAATCAAA 58.607 42.857 0.00 0.00 0.00 2.69
2930 5100 2.768527 TGCCACTTGTCCCAAATCAAAA 59.231 40.909 0.00 0.00 0.00 2.44
2931 5101 3.390639 TGCCACTTGTCCCAAATCAAAAT 59.609 39.130 0.00 0.00 0.00 1.82
2932 5102 3.996363 GCCACTTGTCCCAAATCAAAATC 59.004 43.478 0.00 0.00 0.00 2.17
2933 5103 4.502950 GCCACTTGTCCCAAATCAAAATCA 60.503 41.667 0.00 0.00 0.00 2.57
2934 5104 5.609423 CCACTTGTCCCAAATCAAAATCAA 58.391 37.500 0.00 0.00 0.00 2.57
2935 5105 6.054295 CCACTTGTCCCAAATCAAAATCAAA 58.946 36.000 0.00 0.00 0.00 2.69
2936 5106 6.711645 CCACTTGTCCCAAATCAAAATCAAAT 59.288 34.615 0.00 0.00 0.00 2.32
2937 5107 7.229106 CCACTTGTCCCAAATCAAAATCAAATT 59.771 33.333 0.00 0.00 0.00 1.82
2938 5108 8.284693 CACTTGTCCCAAATCAAAATCAAATTC 58.715 33.333 0.00 0.00 0.00 2.17
2939 5109 7.992033 ACTTGTCCCAAATCAAAATCAAATTCA 59.008 29.630 0.00 0.00 0.00 2.57
2940 5110 8.743085 TTGTCCCAAATCAAAATCAAATTCAA 57.257 26.923 0.00 0.00 0.00 2.69
2941 5111 8.743085 TGTCCCAAATCAAAATCAAATTCAAA 57.257 26.923 0.00 0.00 0.00 2.69
2942 5112 9.352191 TGTCCCAAATCAAAATCAAATTCAAAT 57.648 25.926 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.838317 TCTTGTACCACTGCCTTCTGTAT 59.162 43.478 0.00 0.00 0.00 2.29
187 188 3.103080 AGGGTCGTTCTATCAGGAGTT 57.897 47.619 0.00 0.00 0.00 3.01
222 223 2.908626 GCTCGAACAAAATTTGTAGCCG 59.091 45.455 16.93 16.63 44.59 5.52
328 329 3.002656 CCATTGTATCAGCATGGAACGAC 59.997 47.826 0.00 0.00 36.16 4.34
426 428 1.154035 GCGGAATCTGCCAAAACGG 60.154 57.895 1.88 0.00 38.11 4.44
432 434 2.708216 TATTTCTGCGGAATCTGCCA 57.292 45.000 12.01 0.00 0.00 4.92
551 553 0.396435 CCGCCCATGTATGCCTCTAA 59.604 55.000 0.00 0.00 0.00 2.10
552 554 2.057830 CCGCCCATGTATGCCTCTA 58.942 57.895 0.00 0.00 0.00 2.43
571 573 2.469826 TCGGTTATAACTGCAGCATCG 58.530 47.619 15.27 9.36 35.25 3.84
611 613 8.842358 TGGACGAAACTAATAGATGAAAACTT 57.158 30.769 0.00 0.00 0.00 2.66
623 625 4.876107 CCTACAGCAATGGACGAAACTAAT 59.124 41.667 0.00 0.00 0.00 1.73
743 745 3.458189 TGGCCAAACCGTTTACAATTTG 58.542 40.909 0.61 0.00 43.94 2.32
756 758 3.959535 TTCCTCAAATGATGGCCAAAC 57.040 42.857 10.96 8.09 0.00 2.93
807 809 1.672356 ACATGCTCAGCCGTTGGAC 60.672 57.895 0.00 0.00 0.00 4.02
851 858 3.016736 GTCCCAGTCTCTCTCTCTCTTG 58.983 54.545 0.00 0.00 0.00 3.02
852 859 2.919602 AGTCCCAGTCTCTCTCTCTCTT 59.080 50.000 0.00 0.00 0.00 2.85
954 965 0.037975 GGTGAAAAGGCTCGGTCGTA 60.038 55.000 0.00 0.00 0.00 3.43
955 966 1.301479 GGTGAAAAGGCTCGGTCGT 60.301 57.895 0.00 0.00 0.00 4.34
956 967 1.004918 AGGTGAAAAGGCTCGGTCG 60.005 57.895 0.00 0.00 0.00 4.79
1037 1048 2.045926 CGGTTTCCCTCTGGGCAG 60.046 66.667 0.00 0.00 43.94 4.85
1424 1444 0.540923 GAGCACCAAGAGCAGGAGAT 59.459 55.000 0.00 0.00 0.00 2.75
1617 1646 3.312504 CGATAGACCGCGCACGTG 61.313 66.667 12.28 12.28 36.01 4.49
1732 1761 4.699522 GCCGCTCCCGAACTGGTT 62.700 66.667 0.00 0.00 36.29 3.67
1867 1896 0.607217 TACTTCGACTCGTCCAGCCA 60.607 55.000 0.00 0.00 0.00 4.75
1978 2762 1.787012 TTTAGAACCCTGAACGACGC 58.213 50.000 0.00 0.00 0.00 5.19
2047 2836 3.314080 TCGAGATTTTCCCACAAACACAC 59.686 43.478 0.00 0.00 0.00 3.82
2058 2847 1.941325 AGCGGTCATCGAGATTTTCC 58.059 50.000 0.00 0.00 42.43 3.13
2061 2850 2.386661 ACAAGCGGTCATCGAGATTT 57.613 45.000 0.00 0.00 42.43 2.17
2062 2851 2.223829 CCTACAAGCGGTCATCGAGATT 60.224 50.000 0.00 0.00 42.43 2.40
2063 2852 1.338337 CCTACAAGCGGTCATCGAGAT 59.662 52.381 0.00 0.00 42.43 2.75
2155 2945 7.413644 CAAAACAATAACCAAACAATCCAACC 58.586 34.615 0.00 0.00 0.00 3.77
2189 2979 1.139058 ACTTCAGTTCGTTGCTCCAGT 59.861 47.619 0.00 0.00 0.00 4.00
2190 2980 1.871080 ACTTCAGTTCGTTGCTCCAG 58.129 50.000 0.00 0.00 0.00 3.86
2191 2981 2.325583 AACTTCAGTTCGTTGCTCCA 57.674 45.000 0.00 0.00 31.64 3.86
2192 2982 5.147162 CAATAAACTTCAGTTCGTTGCTCC 58.853 41.667 0.00 0.00 37.25 4.70
2193 2983 5.748592 ACAATAAACTTCAGTTCGTTGCTC 58.251 37.500 13.08 0.00 37.25 4.26
2194 2984 5.751243 ACAATAAACTTCAGTTCGTTGCT 57.249 34.783 13.08 3.56 37.25 3.91
2195 2985 6.199393 AGAACAATAAACTTCAGTTCGTTGC 58.801 36.000 13.08 0.00 42.39 4.17
2196 2986 9.878599 AATAGAACAATAAACTTCAGTTCGTTG 57.121 29.630 12.17 12.17 42.39 4.10
2197 2987 9.878599 CAATAGAACAATAAACTTCAGTTCGTT 57.121 29.630 0.00 0.00 42.39 3.85
2198 2988 8.015658 GCAATAGAACAATAAACTTCAGTTCGT 58.984 33.333 0.00 0.00 42.39 3.85
2199 2989 7.481798 GGCAATAGAACAATAAACTTCAGTTCG 59.518 37.037 0.00 0.00 42.39 3.95
2200 2990 7.481798 CGGCAATAGAACAATAAACTTCAGTTC 59.518 37.037 0.00 0.00 37.25 3.01
2201 2991 7.040686 ACGGCAATAGAACAATAAACTTCAGTT 60.041 33.333 0.00 0.00 40.50 3.16
2202 2992 6.430000 ACGGCAATAGAACAATAAACTTCAGT 59.570 34.615 0.00 0.00 0.00 3.41
2203 2993 6.842163 ACGGCAATAGAACAATAAACTTCAG 58.158 36.000 0.00 0.00 0.00 3.02
2204 2994 6.811253 ACGGCAATAGAACAATAAACTTCA 57.189 33.333 0.00 0.00 0.00 3.02
2205 2995 7.691050 GTGTACGGCAATAGAACAATAAACTTC 59.309 37.037 0.00 0.00 0.00 3.01
2206 2996 7.389607 AGTGTACGGCAATAGAACAATAAACTT 59.610 33.333 0.00 0.00 0.00 2.66
2207 2997 6.877322 AGTGTACGGCAATAGAACAATAAACT 59.123 34.615 0.00 0.00 0.00 2.66
2208 2998 7.068692 AGTGTACGGCAATAGAACAATAAAC 57.931 36.000 0.00 0.00 0.00 2.01
2209 2999 7.675962 AAGTGTACGGCAATAGAACAATAAA 57.324 32.000 0.00 0.00 0.00 1.40
2210 3000 7.675962 AAAGTGTACGGCAATAGAACAATAA 57.324 32.000 0.00 0.00 0.00 1.40
2211 3001 7.675962 AAAAGTGTACGGCAATAGAACAATA 57.324 32.000 0.00 0.00 0.00 1.90
2212 3002 6.569179 AAAAGTGTACGGCAATAGAACAAT 57.431 33.333 0.00 0.00 0.00 2.71
2213 3003 6.930164 TCTAAAAGTGTACGGCAATAGAACAA 59.070 34.615 0.00 0.00 0.00 2.83
2214 3004 6.457355 TCTAAAAGTGTACGGCAATAGAACA 58.543 36.000 0.00 0.00 0.00 3.18
2215 3005 6.956299 TCTAAAAGTGTACGGCAATAGAAC 57.044 37.500 0.00 0.00 0.00 3.01
2216 3006 7.101054 ACATCTAAAAGTGTACGGCAATAGAA 58.899 34.615 0.00 0.00 0.00 2.10
2217 3007 6.636705 ACATCTAAAAGTGTACGGCAATAGA 58.363 36.000 0.00 0.00 0.00 1.98
2218 3008 6.903883 ACATCTAAAAGTGTACGGCAATAG 57.096 37.500 0.00 0.00 0.00 1.73
2219 3009 7.101054 AGAACATCTAAAAGTGTACGGCAATA 58.899 34.615 0.00 0.00 0.00 1.90
2220 3010 5.938125 AGAACATCTAAAAGTGTACGGCAAT 59.062 36.000 0.00 0.00 0.00 3.56
2221 3011 5.302360 AGAACATCTAAAAGTGTACGGCAA 58.698 37.500 0.00 0.00 0.00 4.52
2222 3012 4.890088 AGAACATCTAAAAGTGTACGGCA 58.110 39.130 0.00 0.00 0.00 5.69
2223 3013 4.031426 CGAGAACATCTAAAAGTGTACGGC 59.969 45.833 0.00 0.00 0.00 5.68
2224 3014 4.031426 GCGAGAACATCTAAAAGTGTACGG 59.969 45.833 0.00 0.00 0.00 4.02
2225 3015 4.031426 GGCGAGAACATCTAAAAGTGTACG 59.969 45.833 0.00 0.00 0.00 3.67
2226 3016 5.169295 AGGCGAGAACATCTAAAAGTGTAC 58.831 41.667 0.00 0.00 0.00 2.90
2227 3017 5.401531 AGGCGAGAACATCTAAAAGTGTA 57.598 39.130 0.00 0.00 0.00 2.90
2228 3018 4.273148 AGGCGAGAACATCTAAAAGTGT 57.727 40.909 0.00 0.00 0.00 3.55
2229 3019 4.690748 TGAAGGCGAGAACATCTAAAAGTG 59.309 41.667 0.00 0.00 0.00 3.16
2230 3020 4.894784 TGAAGGCGAGAACATCTAAAAGT 58.105 39.130 0.00 0.00 0.00 2.66
2231 3021 4.932200 ACTGAAGGCGAGAACATCTAAAAG 59.068 41.667 0.00 0.00 0.00 2.27
2232 3022 4.894784 ACTGAAGGCGAGAACATCTAAAA 58.105 39.130 0.00 0.00 0.00 1.52
2233 3023 4.537135 ACTGAAGGCGAGAACATCTAAA 57.463 40.909 0.00 0.00 0.00 1.85
2234 3024 4.537135 AACTGAAGGCGAGAACATCTAA 57.463 40.909 0.00 0.00 0.00 2.10
2235 3025 4.537135 AAACTGAAGGCGAGAACATCTA 57.463 40.909 0.00 0.00 0.00 1.98
2236 3026 3.409026 AAACTGAAGGCGAGAACATCT 57.591 42.857 0.00 0.00 0.00 2.90
2237 3027 4.246458 AGTAAACTGAAGGCGAGAACATC 58.754 43.478 0.00 0.00 0.00 3.06
2238 3028 4.273148 AGTAAACTGAAGGCGAGAACAT 57.727 40.909 0.00 0.00 0.00 2.71
2239 3029 3.746045 AGTAAACTGAAGGCGAGAACA 57.254 42.857 0.00 0.00 0.00 3.18
2240 3030 4.510340 TGAAAGTAAACTGAAGGCGAGAAC 59.490 41.667 0.00 0.00 0.00 3.01
2241 3031 4.699637 TGAAAGTAAACTGAAGGCGAGAA 58.300 39.130 0.00 0.00 0.00 2.87
2266 3056 9.712305 TTCTCAAAACAAACAATTTCACCTTTA 57.288 25.926 0.00 0.00 0.00 1.85
2267 3057 8.614469 TTCTCAAAACAAACAATTTCACCTTT 57.386 26.923 0.00 0.00 0.00 3.11
2358 3149 5.989551 AATTTGTTGCAACCTTCACATTC 57.010 34.783 26.14 0.00 0.00 2.67
2379 3173 4.876107 TGGCGCACTAAAATTTTGGAAAAA 59.124 33.333 19.79 0.00 0.00 1.94
2424 3218 0.807496 GTCTTTCACTGCCTCATGCC 59.193 55.000 0.00 0.00 40.16 4.40
2430 3224 0.390472 GCTAGCGTCTTTCACTGCCT 60.390 55.000 0.00 0.00 0.00 4.75
2432 3226 1.704582 CGCTAGCGTCTTTCACTGC 59.295 57.895 28.66 0.00 34.35 4.40
2445 3244 1.195347 CTGATGACAACGAGCGCTAG 58.805 55.000 11.50 14.42 0.00 3.42
2453 3252 0.798776 GGGTTGAGCTGATGACAACG 59.201 55.000 8.60 0.00 42.92 4.10
2475 3274 1.177401 GGGTCAAAGGAGATGGCAAC 58.823 55.000 0.00 0.00 0.00 4.17
2476 3275 0.039618 GGGGTCAAAGGAGATGGCAA 59.960 55.000 0.00 0.00 0.00 4.52
2477 3276 1.691219 GGGGTCAAAGGAGATGGCA 59.309 57.895 0.00 0.00 0.00 4.92
2535 3334 4.141711 GCTGGTGGACCTACTATTCATCAA 60.142 45.833 0.00 0.00 36.82 2.57
2536 3335 3.388024 GCTGGTGGACCTACTATTCATCA 59.612 47.826 0.00 0.00 36.82 3.07
2537 3336 3.388024 TGCTGGTGGACCTACTATTCATC 59.612 47.826 0.00 0.00 36.82 2.92
2548 3347 1.961277 CGAGTGTTGCTGGTGGACC 60.961 63.158 0.00 0.00 0.00 4.46
2550 3349 1.367471 CTCGAGTGTTGCTGGTGGA 59.633 57.895 3.62 0.00 0.00 4.02
2553 3352 1.367840 GGACTCGAGTGTTGCTGGT 59.632 57.895 25.58 0.00 0.00 4.00
2554 3353 0.668706 CTGGACTCGAGTGTTGCTGG 60.669 60.000 25.58 2.01 0.00 4.85
2555 3354 1.287730 GCTGGACTCGAGTGTTGCTG 61.288 60.000 25.58 9.10 0.00 4.41
2556 3355 1.005630 GCTGGACTCGAGTGTTGCT 60.006 57.895 25.58 0.00 0.00 3.91
2557 3356 2.375766 CGCTGGACTCGAGTGTTGC 61.376 63.158 25.58 20.70 0.00 4.17
2558 3357 1.734477 CCGCTGGACTCGAGTGTTG 60.734 63.158 25.58 12.94 0.00 3.33
2559 3358 0.892358 TACCGCTGGACTCGAGTGTT 60.892 55.000 25.58 0.00 0.00 3.32
2560 3359 1.303074 TACCGCTGGACTCGAGTGT 60.303 57.895 25.58 15.68 0.00 3.55
2561 3360 1.136984 GTACCGCTGGACTCGAGTG 59.863 63.158 25.58 10.14 0.00 3.51
2562 3361 0.680280 ATGTACCGCTGGACTCGAGT 60.680 55.000 20.18 20.18 0.00 4.18
2563 3362 0.248661 CATGTACCGCTGGACTCGAG 60.249 60.000 11.84 11.84 0.00 4.04
2564 3363 1.807226 CATGTACCGCTGGACTCGA 59.193 57.895 1.50 0.00 0.00 4.04
2565 3364 1.878522 GCATGTACCGCTGGACTCG 60.879 63.158 1.50 0.00 0.00 4.18
2566 3365 1.878522 CGCATGTACCGCTGGACTC 60.879 63.158 1.50 0.00 0.00 3.36
2567 3366 2.184322 CGCATGTACCGCTGGACT 59.816 61.111 1.50 0.00 0.00 3.85
2568 3367 1.878522 CTCGCATGTACCGCTGGAC 60.879 63.158 1.50 0.00 0.00 4.02
2569 3368 1.033202 TACTCGCATGTACCGCTGGA 61.033 55.000 1.50 0.00 0.00 3.86
2570 3369 0.179121 TTACTCGCATGTACCGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
2571 3370 1.200483 CTTACTCGCATGTACCGCTG 58.800 55.000 0.00 0.00 0.00 5.18
2572 3371 0.102481 CCTTACTCGCATGTACCGCT 59.898 55.000 0.00 0.00 0.00 5.52
2573 3372 0.874607 CCCTTACTCGCATGTACCGC 60.875 60.000 0.00 0.00 0.00 5.68
2574 3373 0.874607 GCCCTTACTCGCATGTACCG 60.875 60.000 0.00 0.00 0.00 4.02
2575 3374 0.874607 CGCCCTTACTCGCATGTACC 60.875 60.000 0.00 0.00 0.00 3.34
2576 3375 0.179119 ACGCCCTTACTCGCATGTAC 60.179 55.000 0.00 0.00 0.00 2.90
2577 3376 0.101759 GACGCCCTTACTCGCATGTA 59.898 55.000 0.00 0.00 0.00 2.29
2578 3377 1.153628 GACGCCCTTACTCGCATGT 60.154 57.895 0.00 0.00 0.00 3.21
2579 3378 2.230940 CGACGCCCTTACTCGCATG 61.231 63.158 0.00 0.00 0.00 4.06
2580 3379 2.104331 CGACGCCCTTACTCGCAT 59.896 61.111 0.00 0.00 0.00 4.73
2583 3382 2.579787 CAGCGACGCCCTTACTCG 60.580 66.667 17.79 0.00 0.00 4.18
2584 3383 1.516603 GTCAGCGACGCCCTTACTC 60.517 63.158 17.79 0.00 0.00 2.59
2594 3393 1.465187 GCAAATTTACGGGTCAGCGAC 60.465 52.381 0.00 0.79 0.00 5.19
2596 3395 0.802494 AGCAAATTTACGGGTCAGCG 59.198 50.000 0.00 0.00 0.00 5.18
2618 3417 9.352163 GTTTAAACAGTTTTTGAATTGTATGCG 57.648 29.630 13.51 0.00 0.00 4.73
2650 4820 2.543861 CGTTGGCATACATAGCTCGTCT 60.544 50.000 0.00 0.00 0.00 4.18
2654 4824 1.787155 CGACGTTGGCATACATAGCTC 59.213 52.381 0.00 0.00 0.00 4.09
2655 4825 1.852942 CGACGTTGGCATACATAGCT 58.147 50.000 0.00 0.00 0.00 3.32
2656 4826 0.232303 GCGACGTTGGCATACATAGC 59.768 55.000 4.64 0.00 0.00 2.97
2657 4827 0.859232 GGCGACGTTGGCATACATAG 59.141 55.000 23.57 0.00 0.00 2.23
2658 4828 0.462375 AGGCGACGTTGGCATACATA 59.538 50.000 29.02 0.00 36.77 2.29
2659 4829 0.810031 GAGGCGACGTTGGCATACAT 60.810 55.000 29.02 9.87 36.77 2.29
2660 4830 1.447140 GAGGCGACGTTGGCATACA 60.447 57.895 29.02 0.00 36.77 2.29
2661 4831 2.514013 CGAGGCGACGTTGGCATAC 61.514 63.158 29.02 18.37 36.77 2.39
2662 4832 2.202690 CGAGGCGACGTTGGCATA 60.203 61.111 29.02 0.00 36.77 3.14
2663 4833 4.373116 ACGAGGCGACGTTGGCAT 62.373 61.111 29.02 15.31 44.14 4.40
2667 4837 4.695231 ACCGACGAGGCGACGTTG 62.695 66.667 16.38 16.38 46.52 4.10
2668 4838 4.695231 CACCGACGAGGCGACGTT 62.695 66.667 12.99 0.00 46.52 3.99
2676 4846 1.811266 CATGAAGGCCACCGACGAG 60.811 63.158 5.01 0.00 0.00 4.18
2677 4847 2.264480 CATGAAGGCCACCGACGA 59.736 61.111 5.01 0.00 0.00 4.20
2678 4848 2.819595 CCATGAAGGCCACCGACG 60.820 66.667 5.01 0.00 0.00 5.12
2679 4849 2.438434 CCCATGAAGGCCACCGAC 60.438 66.667 5.01 0.00 35.39 4.79
2680 4850 2.609299 TCCCATGAAGGCCACCGA 60.609 61.111 5.01 0.00 35.39 4.69
2681 4851 2.438434 GTCCCATGAAGGCCACCG 60.438 66.667 5.01 0.00 35.39 4.94
2682 4852 2.043953 GGTCCCATGAAGGCCACC 60.044 66.667 5.01 0.00 35.39 4.61
2683 4853 2.043953 GGGTCCCATGAAGGCCAC 60.044 66.667 5.01 0.00 35.39 5.01
2684 4854 2.153898 CTTGGGTCCCATGAAGGCCA 62.154 60.000 17.29 0.00 35.39 5.36
2685 4855 1.380380 CTTGGGTCCCATGAAGGCC 60.380 63.158 17.29 0.00 35.39 5.19
2686 4856 1.380380 CCTTGGGTCCCATGAAGGC 60.380 63.158 22.66 0.00 35.39 4.35
2687 4857 1.307647 CCCTTGGGTCCCATGAAGG 59.692 63.158 22.66 20.04 31.53 3.46
2688 4858 0.323725 CACCCTTGGGTCCCATGAAG 60.324 60.000 22.66 12.55 31.53 3.02
2689 4859 1.773635 CACCCTTGGGTCCCATGAA 59.226 57.895 22.66 2.97 31.53 2.57
2690 4860 2.237965 CCACCCTTGGGTCCCATGA 61.238 63.158 22.66 3.72 39.57 3.07
2691 4861 2.360191 CCACCCTTGGGTCCCATG 59.640 66.667 12.68 14.40 39.57 3.66
2692 4862 3.672503 GCCACCCTTGGGTCCCAT 61.673 66.667 12.68 0.00 44.15 4.00
2696 4866 4.717313 GACCGCCACCCTTGGGTC 62.717 72.222 8.63 0.00 44.15 4.46
2697 4867 3.857521 TAGACCGCCACCCTTGGGT 62.858 63.158 5.34 5.34 44.15 4.51
2698 4868 3.006728 TAGACCGCCACCCTTGGG 61.007 66.667 3.77 3.77 44.15 4.12
2700 4870 1.910580 ATGGTAGACCGCCACCCTTG 61.911 60.000 0.00 0.00 39.03 3.61
2701 4871 1.615424 ATGGTAGACCGCCACCCTT 60.615 57.895 0.00 0.00 39.03 3.95
2702 4872 2.040606 ATGGTAGACCGCCACCCT 59.959 61.111 0.00 0.00 39.03 4.34
2703 4873 2.189521 CATGGTAGACCGCCACCC 59.810 66.667 0.00 0.00 39.03 4.61
2704 4874 0.743345 GAACATGGTAGACCGCCACC 60.743 60.000 0.00 0.00 39.03 4.61
2705 4875 0.249398 AGAACATGGTAGACCGCCAC 59.751 55.000 0.00 0.00 39.03 5.01
2706 4876 1.479323 GTAGAACATGGTAGACCGCCA 59.521 52.381 0.00 0.00 40.68 5.69
2707 4877 1.755380 AGTAGAACATGGTAGACCGCC 59.245 52.381 0.00 0.00 39.43 6.13
2708 4878 3.445857 GAAGTAGAACATGGTAGACCGC 58.554 50.000 0.00 0.00 39.43 5.68
2709 4879 3.488721 CGGAAGTAGAACATGGTAGACCG 60.489 52.174 0.00 0.00 39.43 4.79
2710 4880 3.698040 TCGGAAGTAGAACATGGTAGACC 59.302 47.826 0.00 0.00 0.00 3.85
2711 4881 4.978083 TCGGAAGTAGAACATGGTAGAC 57.022 45.455 0.00 0.00 0.00 2.59
2712 4882 5.198207 TCATCGGAAGTAGAACATGGTAGA 58.802 41.667 0.00 0.00 0.00 2.59
2713 4883 5.515797 TCATCGGAAGTAGAACATGGTAG 57.484 43.478 0.00 0.00 0.00 3.18
2714 4884 5.221441 CCATCATCGGAAGTAGAACATGGTA 60.221 44.000 0.00 0.00 31.41 3.25
2715 4885 4.443457 CCATCATCGGAAGTAGAACATGGT 60.443 45.833 0.00 0.00 31.41 3.55
2716 4886 4.060900 CCATCATCGGAAGTAGAACATGG 58.939 47.826 0.00 0.00 0.00 3.66
2717 4887 3.496130 GCCATCATCGGAAGTAGAACATG 59.504 47.826 0.00 0.00 0.00 3.21
2718 4888 3.733337 GCCATCATCGGAAGTAGAACAT 58.267 45.455 0.00 0.00 0.00 2.71
2719 4889 2.481276 CGCCATCATCGGAAGTAGAACA 60.481 50.000 0.00 0.00 0.00 3.18
2720 4890 2.128035 CGCCATCATCGGAAGTAGAAC 58.872 52.381 0.00 0.00 0.00 3.01
2721 4891 2.509052 CGCCATCATCGGAAGTAGAA 57.491 50.000 0.00 0.00 0.00 2.10
2760 4930 4.845580 AGATCAGCAAGGCGGCGG 62.846 66.667 9.78 0.55 39.27 6.13
2761 4931 3.267860 GAGATCAGCAAGGCGGCG 61.268 66.667 0.51 0.51 39.27 6.46
2762 4932 2.899339 GGAGATCAGCAAGGCGGC 60.899 66.667 0.00 0.00 0.00 6.53
2763 4933 2.587194 CGGAGATCAGCAAGGCGG 60.587 66.667 0.00 0.00 0.00 6.13
2764 4934 3.267860 GCGGAGATCAGCAAGGCG 61.268 66.667 0.00 0.00 37.03 5.52
2765 4935 3.267860 CGCGGAGATCAGCAAGGC 61.268 66.667 0.00 0.00 36.87 4.35
2766 4936 1.150567 CTTCGCGGAGATCAGCAAGG 61.151 60.000 9.41 0.00 36.87 3.61
2767 4937 1.760268 GCTTCGCGGAGATCAGCAAG 61.760 60.000 21.27 6.30 36.87 4.01
2768 4938 1.811266 GCTTCGCGGAGATCAGCAA 60.811 57.895 21.27 0.00 36.87 3.91
2769 4939 2.202797 GCTTCGCGGAGATCAGCA 60.203 61.111 21.27 0.00 36.87 4.41
2770 4940 2.964389 GGCTTCGCGGAGATCAGC 60.964 66.667 21.27 10.41 33.15 4.26
2771 4941 2.656651 CGGCTTCGCGGAGATCAG 60.657 66.667 21.27 1.11 0.00 2.90
2772 4942 4.207281 CCGGCTTCGCGGAGATCA 62.207 66.667 21.27 0.00 0.00 2.92
2783 4953 1.376037 CGGAGAAAGAAGCCGGCTT 60.376 57.895 40.90 40.90 41.29 4.35
2784 4954 2.266055 CGGAGAAAGAAGCCGGCT 59.734 61.111 27.08 27.08 41.29 5.52
2785 4955 3.500642 GCGGAGAAAGAAGCCGGC 61.501 66.667 21.89 21.89 44.92 6.13
2786 4956 2.820037 GGCGGAGAAAGAAGCCGG 60.820 66.667 0.00 0.00 44.92 6.13
2788 4958 2.820037 CCGGCGGAGAAAGAAGCC 60.820 66.667 24.41 0.00 45.67 4.35
2789 4959 3.500642 GCCGGCGGAGAAAGAAGC 61.501 66.667 33.44 6.68 0.00 3.86
2790 4960 2.047274 TGCCGGCGGAGAAAGAAG 60.047 61.111 33.44 0.00 0.00 2.85
2791 4961 2.047274 CTGCCGGCGGAGAAAGAA 60.047 61.111 32.31 2.65 0.00 2.52
2792 4962 4.082523 CCTGCCGGCGGAGAAAGA 62.083 66.667 37.00 7.89 0.00 2.52
2812 4982 2.740826 CAACATTCGCGGGACCGT 60.741 61.111 12.83 0.00 42.09 4.83
2813 4983 2.433491 TCAACATTCGCGGGACCG 60.433 61.111 6.13 6.35 43.09 4.79
2814 4984 2.736682 CGTCAACATTCGCGGGACC 61.737 63.158 6.13 0.00 0.00 4.46
2815 4985 2.736682 CCGTCAACATTCGCGGGAC 61.737 63.158 6.13 4.20 40.45 4.46
2816 4986 2.433491 CCGTCAACATTCGCGGGA 60.433 61.111 6.13 0.00 40.45 5.14
2817 4987 4.160635 GCCGTCAACATTCGCGGG 62.161 66.667 6.13 0.00 43.90 6.13
2818 4988 3.118454 AGCCGTCAACATTCGCGG 61.118 61.111 6.13 0.00 46.17 6.46
2819 4989 1.348538 TACAGCCGTCAACATTCGCG 61.349 55.000 0.00 0.00 0.00 5.87
2820 4990 0.793861 TTACAGCCGTCAACATTCGC 59.206 50.000 0.00 0.00 0.00 4.70
2821 4991 1.201769 CGTTACAGCCGTCAACATTCG 60.202 52.381 0.00 0.00 0.00 3.34
2822 4992 1.463528 GCGTTACAGCCGTCAACATTC 60.464 52.381 0.00 0.00 0.00 2.67
2823 4993 0.515564 GCGTTACAGCCGTCAACATT 59.484 50.000 0.00 0.00 0.00 2.71
2824 4994 2.159181 GCGTTACAGCCGTCAACAT 58.841 52.632 0.00 0.00 0.00 2.71
2825 4995 3.632700 GCGTTACAGCCGTCAACA 58.367 55.556 0.00 0.00 0.00 3.33
2833 5003 4.680567 GCTAAGTTATAGAGGCGTTACAGC 59.319 45.833 0.00 0.00 0.00 4.40
2834 5004 5.221130 GGCTAAGTTATAGAGGCGTTACAG 58.779 45.833 0.00 0.00 0.00 2.74
2835 5005 4.646040 TGGCTAAGTTATAGAGGCGTTACA 59.354 41.667 0.00 0.00 38.55 2.41
2836 5006 5.192327 TGGCTAAGTTATAGAGGCGTTAC 57.808 43.478 0.00 0.00 38.55 2.50
2837 5007 5.594926 GTTGGCTAAGTTATAGAGGCGTTA 58.405 41.667 0.00 0.00 38.55 3.18
2838 5008 4.439968 GTTGGCTAAGTTATAGAGGCGTT 58.560 43.478 0.00 0.00 38.55 4.84
2839 5009 3.490419 CGTTGGCTAAGTTATAGAGGCGT 60.490 47.826 0.00 0.00 38.55 5.68
2840 5010 3.050619 CGTTGGCTAAGTTATAGAGGCG 58.949 50.000 0.00 0.00 38.55 5.52
2841 5011 3.802685 CACGTTGGCTAAGTTATAGAGGC 59.197 47.826 0.00 0.00 36.36 4.70
2842 5012 5.007385 ACACGTTGGCTAAGTTATAGAGG 57.993 43.478 0.00 0.00 0.00 3.69
2843 5013 7.381678 GGATAACACGTTGGCTAAGTTATAGAG 59.618 40.741 6.09 0.00 36.01 2.43
2844 5014 7.205297 GGATAACACGTTGGCTAAGTTATAGA 58.795 38.462 6.09 0.00 36.01 1.98
2845 5015 6.423001 GGGATAACACGTTGGCTAAGTTATAG 59.577 42.308 6.09 0.00 36.01 1.31
2846 5016 6.282930 GGGATAACACGTTGGCTAAGTTATA 58.717 40.000 6.09 0.00 36.01 0.98
2847 5017 5.121105 GGGATAACACGTTGGCTAAGTTAT 58.879 41.667 5.87 5.87 37.90 1.89
2848 5018 4.506758 GGGATAACACGTTGGCTAAGTTA 58.493 43.478 0.00 0.00 0.00 2.24
2849 5019 3.340928 GGGATAACACGTTGGCTAAGTT 58.659 45.455 0.00 0.00 0.00 2.66
2850 5020 2.355412 GGGGATAACACGTTGGCTAAGT 60.355 50.000 0.00 0.00 0.00 2.24
2851 5021 2.093128 AGGGGATAACACGTTGGCTAAG 60.093 50.000 0.00 0.00 0.00 2.18
2852 5022 1.910671 AGGGGATAACACGTTGGCTAA 59.089 47.619 0.00 0.00 0.00 3.09
2853 5023 1.483415 GAGGGGATAACACGTTGGCTA 59.517 52.381 0.00 0.00 0.00 3.93
2854 5024 0.252197 GAGGGGATAACACGTTGGCT 59.748 55.000 0.00 0.00 0.00 4.75
2855 5025 0.252197 AGAGGGGATAACACGTTGGC 59.748 55.000 0.00 0.00 0.00 4.52
2856 5026 3.899052 TTAGAGGGGATAACACGTTGG 57.101 47.619 0.00 0.00 0.00 3.77
2857 5027 6.073222 GCATAATTAGAGGGGATAACACGTTG 60.073 42.308 0.00 0.00 0.00 4.10
2858 5028 5.995897 GCATAATTAGAGGGGATAACACGTT 59.004 40.000 0.00 0.00 0.00 3.99
2859 5029 5.512576 GGCATAATTAGAGGGGATAACACGT 60.513 44.000 0.00 0.00 0.00 4.49
2860 5030 4.935808 GGCATAATTAGAGGGGATAACACG 59.064 45.833 0.00 0.00 0.00 4.49
2861 5031 5.876357 TGGCATAATTAGAGGGGATAACAC 58.124 41.667 0.00 0.00 0.00 3.32
2862 5032 6.045459 ACATGGCATAATTAGAGGGGATAACA 59.955 38.462 0.00 0.00 0.00 2.41
2863 5033 6.485171 ACATGGCATAATTAGAGGGGATAAC 58.515 40.000 0.00 0.00 0.00 1.89
2864 5034 6.274436 TGACATGGCATAATTAGAGGGGATAA 59.726 38.462 0.00 0.00 0.00 1.75
2865 5035 5.790096 TGACATGGCATAATTAGAGGGGATA 59.210 40.000 0.00 0.00 0.00 2.59
2866 5036 4.603171 TGACATGGCATAATTAGAGGGGAT 59.397 41.667 0.00 0.00 0.00 3.85
2867 5037 3.980022 TGACATGGCATAATTAGAGGGGA 59.020 43.478 0.00 0.00 0.00 4.81
2868 5038 4.371624 TGACATGGCATAATTAGAGGGG 57.628 45.455 0.00 0.00 0.00 4.79
2869 5039 5.646793 CAGATGACATGGCATAATTAGAGGG 59.353 44.000 15.77 0.00 0.00 4.30
2870 5040 6.236409 ACAGATGACATGGCATAATTAGAGG 58.764 40.000 15.77 0.63 0.00 3.69
2871 5041 7.741027 AACAGATGACATGGCATAATTAGAG 57.259 36.000 15.77 2.10 0.00 2.43
2872 5042 8.407832 CAAAACAGATGACATGGCATAATTAGA 58.592 33.333 15.77 0.00 0.00 2.10
2873 5043 7.168637 GCAAAACAGATGACATGGCATAATTAG 59.831 37.037 15.77 5.37 0.00 1.73
2874 5044 6.979817 GCAAAACAGATGACATGGCATAATTA 59.020 34.615 15.77 0.00 0.00 1.40
2875 5045 5.813672 GCAAAACAGATGACATGGCATAATT 59.186 36.000 15.77 6.30 0.00 1.40
2876 5046 5.105269 TGCAAAACAGATGACATGGCATAAT 60.105 36.000 15.77 3.06 0.00 1.28
2877 5047 4.220163 TGCAAAACAGATGACATGGCATAA 59.780 37.500 15.77 0.00 0.00 1.90
2878 5048 3.762823 TGCAAAACAGATGACATGGCATA 59.237 39.130 15.77 0.00 0.00 3.14
2879 5049 2.563620 TGCAAAACAGATGACATGGCAT 59.436 40.909 15.73 15.73 0.00 4.40
2880 5050 1.962100 TGCAAAACAGATGACATGGCA 59.038 42.857 2.18 2.18 0.00 4.92
2881 5051 2.728690 TGCAAAACAGATGACATGGC 57.271 45.000 0.00 0.00 0.00 4.40
2882 5052 7.036829 TCATTATTGCAAAACAGATGACATGG 58.963 34.615 1.71 0.00 0.00 3.66
2883 5053 8.468720 TTCATTATTGCAAAACAGATGACATG 57.531 30.769 1.71 0.00 0.00 3.21
2884 5054 9.093970 CATTCATTATTGCAAAACAGATGACAT 57.906 29.630 1.71 0.00 0.00 3.06
2885 5055 7.063662 GCATTCATTATTGCAAAACAGATGACA 59.936 33.333 1.71 1.99 38.72 3.58
2886 5056 7.396419 GCATTCATTATTGCAAAACAGATGAC 58.604 34.615 1.71 0.00 38.72 3.06
2887 5057 6.535865 GGCATTCATTATTGCAAAACAGATGA 59.464 34.615 1.71 6.37 40.66 2.92
2888 5058 6.314152 TGGCATTCATTATTGCAAAACAGATG 59.686 34.615 1.71 5.55 40.66 2.90
2889 5059 6.314400 GTGGCATTCATTATTGCAAAACAGAT 59.686 34.615 1.71 0.00 40.66 2.90
2890 5060 5.638657 GTGGCATTCATTATTGCAAAACAGA 59.361 36.000 1.71 0.00 40.66 3.41
2891 5061 5.640357 AGTGGCATTCATTATTGCAAAACAG 59.360 36.000 1.71 0.00 40.66 3.16
2892 5062 5.549347 AGTGGCATTCATTATTGCAAAACA 58.451 33.333 1.71 0.00 40.66 2.83
2893 5063 6.073112 ACAAGTGGCATTCATTATTGCAAAAC 60.073 34.615 1.71 0.00 40.66 2.43
2894 5064 5.996513 ACAAGTGGCATTCATTATTGCAAAA 59.003 32.000 1.71 0.00 40.66 2.44
2895 5065 5.549347 ACAAGTGGCATTCATTATTGCAAA 58.451 33.333 1.71 0.00 40.66 3.68
2896 5066 5.149973 ACAAGTGGCATTCATTATTGCAA 57.850 34.783 0.00 0.00 40.66 4.08
2897 5067 4.381825 GGACAAGTGGCATTCATTATTGCA 60.382 41.667 0.00 0.00 40.66 4.08
2898 5068 4.114794 GGACAAGTGGCATTCATTATTGC 58.885 43.478 0.00 0.00 38.14 3.56
2899 5069 4.160065 TGGGACAAGTGGCATTCATTATTG 59.840 41.667 0.00 0.00 31.92 1.90
2900 5070 4.352009 TGGGACAAGTGGCATTCATTATT 58.648 39.130 0.00 0.00 31.92 1.40
2901 5071 3.979911 TGGGACAAGTGGCATTCATTAT 58.020 40.909 0.00 0.00 31.92 1.28
2902 5072 3.448093 TGGGACAAGTGGCATTCATTA 57.552 42.857 0.00 0.00 31.92 1.90
2903 5073 2.307496 TGGGACAAGTGGCATTCATT 57.693 45.000 0.00 0.00 31.92 2.57
2916 5086 8.743085 TTTGAATTTGATTTTGATTTGGGACA 57.257 26.923 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.