Multiple sequence alignment - TraesCS3B01G178400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G178400 chr3B 100.000 3813 0 0 1 3813 182749050 182745238 0.000000e+00 7042
1 TraesCS3B01G178400 chr3B 90.400 375 23 6 2346 2709 775522872 775523244 7.410000e-132 481
2 TraesCS3B01G178400 chr3A 85.633 1761 137 63 211 1886 141007776 141009505 0.000000e+00 1744
3 TraesCS3B01G178400 chr3A 91.267 584 41 9 2606 3185 141010442 141011019 0.000000e+00 787
4 TraesCS3B01G178400 chr3A 87.948 307 26 2 3518 3813 141040487 141040793 6.060000e-93 351
5 TraesCS3B01G178400 chr3A 85.465 344 28 10 3176 3508 141011044 141011376 4.720000e-89 339
6 TraesCS3B01G178400 chr3A 92.473 93 4 3 1923 2012 364241359 364241267 3.090000e-26 130
7 TraesCS3B01G178400 chr3D 89.091 1155 57 28 790 1886 128997731 128996588 0.000000e+00 1371
8 TraesCS3B01G178400 chr3D 87.918 687 62 15 2509 3185 128996036 128995361 0.000000e+00 789
9 TraesCS3B01G178400 chr3D 86.022 651 52 13 3179 3813 128995333 128994706 0.000000e+00 662
10 TraesCS3B01G178400 chr4A 91.433 642 35 8 2077 2709 671334923 671334293 0.000000e+00 863
11 TraesCS3B01G178400 chr4A 82.514 366 44 12 2629 2982 40446043 40445686 1.720000e-78 303
12 TraesCS3B01G178400 chr4A 83.939 330 36 6 1574 1886 40451300 40450971 2.230000e-77 300
13 TraesCS3B01G178400 chr4A 88.393 112 13 0 981 1092 40452784 40452673 6.640000e-28 135
14 TraesCS3B01G178400 chr6B 90.933 375 21 6 2346 2709 696867486 696867114 3.420000e-135 492
15 TraesCS3B01G178400 chr6B 79.923 259 38 11 453 702 640586768 640587021 1.090000e-40 178
16 TraesCS3B01G178400 chr4B 90.933 375 21 6 2346 2709 602904534 602904906 3.420000e-135 492
17 TraesCS3B01G178400 chr4B 92.754 207 15 0 2617 2823 520221654 520221860 2.230000e-77 300
18 TraesCS3B01G178400 chr4B 85.401 274 27 4 1575 1835 520220510 520220783 4.850000e-69 272
19 TraesCS3B01G178400 chr4B 82.258 186 24 8 912 1092 520219563 520219744 6.600000e-33 152
20 TraesCS3B01G178400 chr4B 92.473 93 4 3 1935 2025 315725407 315725316 3.090000e-26 130
21 TraesCS3B01G178400 chr7B 90.667 375 22 6 2346 2709 412564941 412564569 1.590000e-133 486
22 TraesCS3B01G178400 chrUn 90.160 376 22 9 2346 2709 450889206 450889578 3.450000e-130 475
23 TraesCS3B01G178400 chrUn 90.909 99 4 5 1918 2012 70285822 70285919 1.110000e-25 128
24 TraesCS3B01G178400 chr5B 90.160 376 22 9 2346 2709 670444254 670444626 3.450000e-130 475
25 TraesCS3B01G178400 chr2B 90.133 375 24 6 2346 2709 553107687 553107315 3.450000e-130 475
26 TraesCS3B01G178400 chr4D 86.646 322 30 8 2626 2938 423600404 423600721 1.010000e-90 344
27 TraesCS3B01G178400 chr4D 83.929 336 35 8 1568 1886 423599402 423599735 1.720000e-78 303
28 TraesCS3B01G178400 chr5D 82.879 257 27 15 455 699 541525563 541525312 8.300000e-52 215
29 TraesCS3B01G178400 chr5D 83.333 234 24 12 485 708 475241899 475242127 6.460000e-48 202
30 TraesCS3B01G178400 chr5D 79.128 321 42 18 351 651 426503814 426504129 8.350000e-47 198
31 TraesCS3B01G178400 chr1A 85.294 204 20 7 459 655 111624472 111624272 6.460000e-48 202
32 TraesCS3B01G178400 chr2D 84.615 208 23 8 453 653 160403731 160403936 8.350000e-47 198
33 TraesCS3B01G178400 chr2D 84.390 205 25 6 453 651 19215902 19216105 1.080000e-45 195
34 TraesCS3B01G178400 chr2D 84.466 206 22 9 453 651 345277130 345277332 1.080000e-45 195
35 TraesCS3B01G178400 chr2D 94.624 93 3 2 1935 2025 367233704 367233612 3.970000e-30 143
36 TraesCS3B01G178400 chr6A 91.837 98 4 4 1933 2026 346585430 346585527 2.390000e-27 134
37 TraesCS3B01G178400 chr7A 92.553 94 4 3 1934 2025 326036695 326036787 8.590000e-27 132
38 TraesCS3B01G178400 chr6D 91.753 97 4 4 1933 2025 249987219 249987123 8.590000e-27 132
39 TraesCS3B01G178400 chr6D 92.473 93 4 3 1935 2025 372827511 372827602 3.090000e-26 130
40 TraesCS3B01G178400 chr1B 96.250 80 2 1 1935 2014 317575185 317575263 3.090000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G178400 chr3B 182745238 182749050 3812 True 7042.000000 7042 100.000000 1 3813 1 chr3B.!!$R1 3812
1 TraesCS3B01G178400 chr3A 141007776 141011376 3600 False 956.666667 1744 87.455000 211 3508 3 chr3A.!!$F2 3297
2 TraesCS3B01G178400 chr3D 128994706 128997731 3025 True 940.666667 1371 87.677000 790 3813 3 chr3D.!!$R1 3023
3 TraesCS3B01G178400 chr4A 671334293 671334923 630 True 863.000000 863 91.433000 2077 2709 1 chr4A.!!$R2 632
4 TraesCS3B01G178400 chr4A 40450971 40452784 1813 True 217.500000 300 86.166000 981 1886 2 chr4A.!!$R3 905
5 TraesCS3B01G178400 chr4B 520219563 520221860 2297 False 241.333333 300 86.804333 912 2823 3 chr4B.!!$F2 1911
6 TraesCS3B01G178400 chr4D 423599402 423600721 1319 False 323.500000 344 85.287500 1568 2938 2 chr4D.!!$F1 1370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.038166 ATTTGCTTTCTCGAGGGGCA 59.962 50.0 13.56 16.67 0.00 5.36 F
1208 2225 0.109532 TGGCGAAATGTGGAAGTGGA 59.890 50.0 0.00 0.00 0.00 4.02 F
2016 3180 0.036732 AAGATCTCGCAACCAGCCAA 59.963 50.0 0.00 0.00 41.38 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 3161 0.036732 TTGGCTGGTTGCGAGATCTT 59.963 50.0 0.00 0.00 44.05 2.40 R
2020 3184 0.107165 GGTTGGTTGGGCTAGGCTAG 60.107 60.0 17.33 17.33 0.00 3.42 R
3512 5258 0.038021 TGCTTAGGTGGCATCTGCAA 59.962 50.0 11.36 0.00 44.36 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.871465 TTTTTGGCTTTTTGTCTTTCACC 57.129 34.783 0.00 0.00 0.00 4.02
26 27 2.861462 TGGCTTTTTGTCTTTCACCG 57.139 45.000 0.00 0.00 0.00 4.94
27 28 1.407258 TGGCTTTTTGTCTTTCACCGG 59.593 47.619 0.00 0.00 0.00 5.28
28 29 1.407618 GGCTTTTTGTCTTTCACCGGT 59.592 47.619 0.00 0.00 0.00 5.28
29 30 2.543031 GGCTTTTTGTCTTTCACCGGTC 60.543 50.000 2.59 0.00 0.00 4.79
30 31 2.357952 GCTTTTTGTCTTTCACCGGTCT 59.642 45.455 2.59 0.00 0.00 3.85
31 32 3.181490 GCTTTTTGTCTTTCACCGGTCTT 60.181 43.478 2.59 0.00 0.00 3.01
32 33 4.676986 GCTTTTTGTCTTTCACCGGTCTTT 60.677 41.667 2.59 0.00 0.00 2.52
33 34 4.625972 TTTTGTCTTTCACCGGTCTTTC 57.374 40.909 2.59 0.00 0.00 2.62
34 35 3.553828 TTGTCTTTCACCGGTCTTTCT 57.446 42.857 2.59 0.00 0.00 2.52
35 36 4.675976 TTGTCTTTCACCGGTCTTTCTA 57.324 40.909 2.59 0.00 0.00 2.10
36 37 4.675976 TGTCTTTCACCGGTCTTTCTAA 57.324 40.909 2.59 0.00 0.00 2.10
37 38 5.026038 TGTCTTTCACCGGTCTTTCTAAA 57.974 39.130 2.59 0.00 0.00 1.85
38 39 4.812626 TGTCTTTCACCGGTCTTTCTAAAC 59.187 41.667 2.59 0.00 0.00 2.01
39 40 5.055144 GTCTTTCACCGGTCTTTCTAAACT 58.945 41.667 2.59 0.00 0.00 2.66
40 41 5.526479 GTCTTTCACCGGTCTTTCTAAACTT 59.474 40.000 2.59 0.00 0.00 2.66
41 42 6.037940 GTCTTTCACCGGTCTTTCTAAACTTT 59.962 38.462 2.59 0.00 0.00 2.66
42 43 6.600427 TCTTTCACCGGTCTTTCTAAACTTTT 59.400 34.615 2.59 0.00 0.00 2.27
43 44 5.744666 TCACCGGTCTTTCTAAACTTTTG 57.255 39.130 2.59 0.00 0.00 2.44
44 45 4.577283 TCACCGGTCTTTCTAAACTTTTGG 59.423 41.667 2.59 0.00 0.00 3.28
45 46 4.577283 CACCGGTCTTTCTAAACTTTTGGA 59.423 41.667 2.59 0.00 0.00 3.53
46 47 4.577693 ACCGGTCTTTCTAAACTTTTGGAC 59.422 41.667 0.00 0.00 0.00 4.02
47 48 4.577283 CCGGTCTTTCTAAACTTTTGGACA 59.423 41.667 0.00 0.00 0.00 4.02
48 49 5.066764 CCGGTCTTTCTAAACTTTTGGACAA 59.933 40.000 0.00 0.00 0.00 3.18
49 50 6.404954 CCGGTCTTTCTAAACTTTTGGACAAA 60.405 38.462 0.00 0.00 0.00 2.83
50 51 7.030768 CGGTCTTTCTAAACTTTTGGACAAAA 58.969 34.615 9.58 9.58 37.90 2.44
51 52 7.542824 CGGTCTTTCTAAACTTTTGGACAAAAA 59.457 33.333 10.95 0.25 39.49 1.94
108 109 6.380095 TTTTTATTTCACTGTAGGCACGTT 57.620 33.333 0.00 0.00 0.00 3.99
109 110 6.380095 TTTTATTTCACTGTAGGCACGTTT 57.620 33.333 0.00 0.00 0.00 3.60
110 111 6.380095 TTTATTTCACTGTAGGCACGTTTT 57.620 33.333 0.00 0.00 0.00 2.43
111 112 4.911514 ATTTCACTGTAGGCACGTTTTT 57.088 36.364 0.00 0.00 0.00 1.94
135 136 6.182039 TCTTTCGCTAAAGACATGGATTTG 57.818 37.500 9.21 0.00 44.85 2.32
136 137 4.355543 TTCGCTAAAGACATGGATTTGC 57.644 40.909 0.00 1.02 0.00 3.68
137 138 3.609853 TCGCTAAAGACATGGATTTGCT 58.390 40.909 0.00 0.00 0.00 3.91
138 139 4.009675 TCGCTAAAGACATGGATTTGCTT 58.990 39.130 0.00 0.00 0.00 3.91
139 140 4.458989 TCGCTAAAGACATGGATTTGCTTT 59.541 37.500 0.00 0.00 33.76 3.51
140 141 4.795278 CGCTAAAGACATGGATTTGCTTTC 59.205 41.667 0.00 0.00 31.85 2.62
141 142 5.392380 CGCTAAAGACATGGATTTGCTTTCT 60.392 40.000 0.00 0.00 31.85 2.52
142 143 6.032717 GCTAAAGACATGGATTTGCTTTCTC 58.967 40.000 0.00 0.00 31.85 2.87
143 144 4.691860 AAGACATGGATTTGCTTTCTCG 57.308 40.909 0.00 0.00 0.00 4.04
144 145 3.942829 AGACATGGATTTGCTTTCTCGA 58.057 40.909 0.00 0.00 0.00 4.04
145 146 3.937706 AGACATGGATTTGCTTTCTCGAG 59.062 43.478 5.93 5.93 0.00 4.04
146 147 3.012518 ACATGGATTTGCTTTCTCGAGG 58.987 45.455 13.56 0.00 0.00 4.63
147 148 2.113860 TGGATTTGCTTTCTCGAGGG 57.886 50.000 13.56 4.66 0.00 4.30
148 149 1.340017 TGGATTTGCTTTCTCGAGGGG 60.340 52.381 13.56 4.29 0.00 4.79
149 150 0.735471 GATTTGCTTTCTCGAGGGGC 59.265 55.000 13.56 14.34 0.00 5.80
150 151 0.038166 ATTTGCTTTCTCGAGGGGCA 59.962 50.000 13.56 16.67 0.00 5.36
151 152 0.889186 TTTGCTTTCTCGAGGGGCAC 60.889 55.000 20.88 6.84 32.47 5.01
152 153 2.815647 GCTTTCTCGAGGGGCACG 60.816 66.667 13.56 0.00 0.00 5.34
153 154 2.970639 CTTTCTCGAGGGGCACGA 59.029 61.111 13.56 0.00 38.11 4.35
154 155 1.517832 CTTTCTCGAGGGGCACGAT 59.482 57.895 13.56 0.00 39.02 3.73
155 156 0.528684 CTTTCTCGAGGGGCACGATC 60.529 60.000 13.56 0.00 39.02 3.69
156 157 1.254975 TTTCTCGAGGGGCACGATCA 61.255 55.000 13.56 0.00 39.02 2.92
157 158 1.043116 TTCTCGAGGGGCACGATCAT 61.043 55.000 13.56 0.00 39.02 2.45
158 159 1.300465 CTCGAGGGGCACGATCATG 60.300 63.158 3.91 0.00 39.02 3.07
159 160 2.969238 CGAGGGGCACGATCATGC 60.969 66.667 4.90 4.90 45.34 4.06
165 166 4.983090 GCACGATCATGCCTTTCG 57.017 55.556 1.37 0.00 39.86 3.46
166 167 2.383170 GCACGATCATGCCTTTCGA 58.617 52.632 1.37 0.00 39.86 3.71
167 168 0.726827 GCACGATCATGCCTTTCGAA 59.273 50.000 1.37 0.00 39.86 3.71
168 169 1.130373 GCACGATCATGCCTTTCGAAA 59.870 47.619 10.71 10.71 39.86 3.46
169 170 2.414029 GCACGATCATGCCTTTCGAAAA 60.414 45.455 12.41 0.00 39.86 2.29
170 171 3.163594 CACGATCATGCCTTTCGAAAAC 58.836 45.455 12.41 7.77 36.73 2.43
171 172 2.811431 ACGATCATGCCTTTCGAAAACA 59.189 40.909 12.41 13.19 36.73 2.83
172 173 3.252215 ACGATCATGCCTTTCGAAAACAA 59.748 39.130 12.41 0.37 36.73 2.83
173 174 4.225984 CGATCATGCCTTTCGAAAACAAA 58.774 39.130 12.41 6.74 34.92 2.83
174 175 4.679197 CGATCATGCCTTTCGAAAACAAAA 59.321 37.500 12.41 6.42 34.92 2.44
175 176 5.174761 CGATCATGCCTTTCGAAAACAAAAA 59.825 36.000 12.41 4.25 34.92 1.94
238 239 6.183360 TGCCTCTTCGAAACAGAAAGAAAATT 60.183 34.615 0.00 0.00 0.00 1.82
239 240 6.142958 GCCTCTTCGAAACAGAAAGAAAATTG 59.857 38.462 0.00 0.00 0.00 2.32
240 241 7.196331 CCTCTTCGAAACAGAAAGAAAATTGT 58.804 34.615 0.00 0.00 0.00 2.71
241 242 7.166473 CCTCTTCGAAACAGAAAGAAAATTGTG 59.834 37.037 0.00 0.00 0.00 3.33
296 297 2.677979 GCCCGTGCCTCTCGAAAAC 61.678 63.158 0.00 0.00 0.00 2.43
340 341 1.542915 CCTGTGAGAGGCATGGTTTTG 59.457 52.381 0.00 0.00 34.01 2.44
358 359 5.389935 GGTTTTGCTTTCACTATGTCTCTCG 60.390 44.000 0.00 0.00 0.00 4.04
363 364 4.327627 GCTTTCACTATGTCTCTCGGAAAC 59.672 45.833 0.00 0.00 0.00 2.78
418 420 3.794564 CACAAAAGGTACGGTTTTGCTTC 59.205 43.478 22.56 0.00 45.06 3.86
420 422 2.351706 AAGGTACGGTTTTGCTTCCA 57.648 45.000 0.00 0.00 0.00 3.53
427 429 3.751518 ACGGTTTTGCTTCCATAAGAGT 58.248 40.909 0.00 0.00 34.37 3.24
431 433 4.518970 GGTTTTGCTTCCATAAGAGTCACA 59.481 41.667 0.00 0.00 34.37 3.58
438 440 1.066858 CCATAAGAGTCACAGGCGTGT 60.067 52.381 6.15 6.15 44.02 4.49
439 441 2.612972 CCATAAGAGTCACAGGCGTGTT 60.613 50.000 9.81 0.00 44.02 3.32
441 443 1.583054 AAGAGTCACAGGCGTGTTTC 58.417 50.000 9.81 8.16 44.02 2.78
449 451 2.034558 CACAGGCGTGTTTCTTGGAAAT 59.965 45.455 9.81 0.00 38.41 2.17
450 452 2.693074 ACAGGCGTGTTTCTTGGAAATT 59.307 40.909 6.15 0.00 30.30 1.82
453 455 2.545742 GGCGTGTTTCTTGGAAATTGCT 60.546 45.455 11.00 0.00 0.00 3.91
457 459 5.233263 GCGTGTTTCTTGGAAATTGCTTTTA 59.767 36.000 0.00 0.00 0.00 1.52
464 466 9.883142 TTTCTTGGAAATTGCTTTTAGAAAAGA 57.117 25.926 17.00 0.00 46.39 2.52
465 467 9.883142 TTCTTGGAAATTGCTTTTAGAAAAGAA 57.117 25.926 17.00 5.21 46.39 2.52
466 468 9.883142 TCTTGGAAATTGCTTTTAGAAAAGAAA 57.117 25.926 17.00 13.50 46.39 2.52
556 558 9.965902 AAACCTATCAACATGAGATCTAGTTTT 57.034 29.630 0.00 0.00 0.00 2.43
557 559 8.954950 ACCTATCAACATGAGATCTAGTTTTG 57.045 34.615 0.00 0.00 0.00 2.44
559 561 9.605275 CCTATCAACATGAGATCTAGTTTTGAA 57.395 33.333 0.00 3.96 0.00 2.69
562 564 9.902684 ATCAACATGAGATCTAGTTTTGAAGAT 57.097 29.630 0.00 6.38 0.00 2.40
563 565 9.376075 TCAACATGAGATCTAGTTTTGAAGATC 57.624 33.333 0.00 4.52 37.89 2.75
564 566 9.381033 CAACATGAGATCTAGTTTTGAAGATCT 57.619 33.333 13.24 13.24 46.88 2.75
583 585 2.505498 CGACGCGAGGAATCCAACG 61.505 63.158 15.93 12.84 0.00 4.10
586 588 1.140161 CGCGAGGAATCCAACGGTA 59.860 57.895 17.17 0.00 0.00 4.02
594 596 2.553602 GGAATCCAACGGTAAAAACGGT 59.446 45.455 0.00 0.00 35.23 4.83
608 610 4.993029 AAAACGGTTTGAGATTTGGACA 57.007 36.364 6.92 0.00 0.00 4.02
609 611 4.568152 AAACGGTTTGAGATTTGGACAG 57.432 40.909 5.12 0.00 0.00 3.51
610 612 3.208747 ACGGTTTGAGATTTGGACAGT 57.791 42.857 0.00 0.00 0.00 3.55
611 613 3.551846 ACGGTTTGAGATTTGGACAGTT 58.448 40.909 0.00 0.00 0.00 3.16
612 614 3.951680 ACGGTTTGAGATTTGGACAGTTT 59.048 39.130 0.00 0.00 0.00 2.66
613 615 5.127491 ACGGTTTGAGATTTGGACAGTTTA 58.873 37.500 0.00 0.00 0.00 2.01
614 616 5.591067 ACGGTTTGAGATTTGGACAGTTTAA 59.409 36.000 0.00 0.00 0.00 1.52
615 617 6.095720 ACGGTTTGAGATTTGGACAGTTTAAA 59.904 34.615 0.00 0.00 0.00 1.52
699 707 7.042335 AGGTACTTCTCAATTAGTGATTTCGG 58.958 38.462 0.00 0.00 30.81 4.30
700 708 6.817140 GGTACTTCTCAATTAGTGATTTCGGT 59.183 38.462 0.00 0.00 35.07 4.69
738 746 7.604545 GCTGTTCTACTACATCCTTCTTTTTCT 59.395 37.037 0.00 0.00 0.00 2.52
757 765 4.002906 TCTTTCATTTCGTGTAGCCACT 57.997 40.909 0.00 0.00 39.55 4.00
849 888 2.125512 CCTCGAAACTGGGCCGAG 60.126 66.667 14.03 14.03 46.48 4.63
899 951 3.137459 CGCAGAGCGTCCTCTCCT 61.137 66.667 2.82 0.00 45.21 3.69
900 952 2.804856 GCAGAGCGTCCTCTCCTC 59.195 66.667 0.00 0.00 45.21 3.71
957 1009 3.470888 GCCTCCTTCCTAGCCGCA 61.471 66.667 0.00 0.00 0.00 5.69
1204 2221 0.527113 TGCATGGCGAAATGTGGAAG 59.473 50.000 0.00 0.00 0.00 3.46
1207 2224 1.135315 CATGGCGAAATGTGGAAGTGG 60.135 52.381 0.00 0.00 0.00 4.00
1208 2225 0.109532 TGGCGAAATGTGGAAGTGGA 59.890 50.000 0.00 0.00 0.00 4.02
1209 2226 0.804989 GGCGAAATGTGGAAGTGGAG 59.195 55.000 0.00 0.00 0.00 3.86
1210 2227 1.523758 GCGAAATGTGGAAGTGGAGT 58.476 50.000 0.00 0.00 0.00 3.85
1211 2228 1.880027 GCGAAATGTGGAAGTGGAGTT 59.120 47.619 0.00 0.00 0.00 3.01
1212 2229 3.071479 GCGAAATGTGGAAGTGGAGTTA 58.929 45.455 0.00 0.00 0.00 2.24
1251 2269 2.259618 GTCGCGTGTGATTATGTGTCT 58.740 47.619 5.77 0.00 0.00 3.41
1277 2295 5.862924 TTGACGAAAAGGAAGAGCTATTG 57.137 39.130 0.00 0.00 0.00 1.90
1278 2296 4.253685 TGACGAAAAGGAAGAGCTATTGG 58.746 43.478 0.00 0.00 0.00 3.16
1406 2429 5.049828 TCACAGTTGAGCCGATTATATGTG 58.950 41.667 0.00 0.00 37.46 3.21
1498 2562 4.437930 CCTTTCTTGCGGATGAGTGATTTC 60.438 45.833 0.00 0.00 0.00 2.17
1517 2581 2.356135 TCGGAGCTTAATTGTGGCTTC 58.644 47.619 0.00 1.58 36.37 3.86
1571 2635 6.595326 TGTCTGATAACAATTAGGTGCTTCAG 59.405 38.462 0.00 0.00 0.00 3.02
1641 2705 0.747255 GGAGTCGCATCTTCCAGCTA 59.253 55.000 0.00 0.00 0.00 3.32
1691 2755 2.591715 ACACAGCTTGTCCGTGGC 60.592 61.111 6.15 0.00 29.79 5.01
1776 2856 9.431887 AGTGTTATGTGGTAACTGTATTACTTG 57.568 33.333 0.00 0.00 42.58 3.16
1818 2899 5.758296 GGTAGTTGTGAGATCTTTGTGTTGA 59.242 40.000 0.00 0.00 0.00 3.18
1886 3050 3.206150 CAGTCAAGCACTGTGGTTTACT 58.794 45.455 25.51 25.51 46.81 2.24
1887 3051 3.627577 CAGTCAAGCACTGTGGTTTACTT 59.372 43.478 27.51 15.57 46.81 2.24
1888 3052 4.096382 CAGTCAAGCACTGTGGTTTACTTT 59.904 41.667 27.51 12.70 46.81 2.66
1889 3053 5.295787 CAGTCAAGCACTGTGGTTTACTTTA 59.704 40.000 27.51 6.02 46.81 1.85
1890 3054 5.296035 AGTCAAGCACTGTGGTTTACTTTAC 59.704 40.000 25.51 14.17 38.64 2.01
1893 3057 4.519213 AGCACTGTGGTTTACTTTACACA 58.481 39.130 6.68 0.00 41.11 3.72
1897 3061 5.529430 CACTGTGGTTTACTTTACACATCCA 59.471 40.000 0.00 0.00 42.27 3.41
1899 3063 6.262273 ACTGTGGTTTACTTTACACATCCAAG 59.738 38.462 0.00 0.00 42.27 3.61
1911 3075 9.831737 CTTTACACATCCAAGATTTAGTTGAAG 57.168 33.333 0.00 0.00 0.00 3.02
1915 3079 9.082313 ACACATCCAAGATTTAGTTGAAGATTT 57.918 29.630 0.00 0.00 0.00 2.17
1931 3095 9.865484 GTTGAAGATTTACTTTACACTCTTGTC 57.135 33.333 0.00 0.00 39.13 3.18
1936 3100 9.832445 AGATTTACTTTACACTCTTGTCTTCAA 57.168 29.630 0.00 0.00 37.15 2.69
1937 3101 9.865484 GATTTACTTTACACTCTTGTCTTCAAC 57.135 33.333 0.00 0.00 37.15 3.18
1938 3102 8.780846 TTTACTTTACACTCTTGTCTTCAACA 57.219 30.769 0.00 0.00 37.15 3.33
1939 3103 8.780846 TTACTTTACACTCTTGTCTTCAACAA 57.219 30.769 0.00 0.00 45.60 2.83
1940 3104 7.681939 ACTTTACACTCTTGTCTTCAACAAA 57.318 32.000 0.00 0.00 46.95 2.83
1941 3105 7.527457 ACTTTACACTCTTGTCTTCAACAAAC 58.473 34.615 0.00 0.00 46.95 2.93
1942 3106 7.174253 ACTTTACACTCTTGTCTTCAACAAACA 59.826 33.333 0.00 0.00 46.95 2.83
1943 3107 5.957842 ACACTCTTGTCTTCAACAAACAA 57.042 34.783 0.00 0.00 46.95 2.83
1945 3109 7.624360 ACACTCTTGTCTTCAACAAACAATA 57.376 32.000 0.00 0.00 46.95 1.90
1946 3110 8.050778 ACACTCTTGTCTTCAACAAACAATAA 57.949 30.769 0.00 0.00 46.95 1.40
1947 3111 7.968405 ACACTCTTGTCTTCAACAAACAATAAC 59.032 33.333 0.00 0.00 46.95 1.89
1948 3112 7.967854 CACTCTTGTCTTCAACAAACAATAACA 59.032 33.333 0.00 0.00 46.95 2.41
1949 3113 8.519526 ACTCTTGTCTTCAACAAACAATAACAA 58.480 29.630 0.00 0.00 46.95 2.83
1950 3114 9.352784 CTCTTGTCTTCAACAAACAATAACAAA 57.647 29.630 0.00 0.00 46.95 2.83
1951 3115 9.352784 TCTTGTCTTCAACAAACAATAACAAAG 57.647 29.630 0.00 0.00 46.95 2.77
1952 3116 7.518731 TGTCTTCAACAAACAATAACAAAGC 57.481 32.000 0.00 0.00 34.03 3.51
1953 3117 6.533367 TGTCTTCAACAAACAATAACAAAGCC 59.467 34.615 0.00 0.00 34.03 4.35
1954 3118 6.756542 GTCTTCAACAAACAATAACAAAGCCT 59.243 34.615 0.00 0.00 0.00 4.58
1955 3119 7.277760 GTCTTCAACAAACAATAACAAAGCCTT 59.722 33.333 0.00 0.00 0.00 4.35
1956 3120 7.821846 TCTTCAACAAACAATAACAAAGCCTTT 59.178 29.630 0.00 0.00 0.00 3.11
1957 3121 9.092876 CTTCAACAAACAATAACAAAGCCTTTA 57.907 29.630 0.00 0.00 0.00 1.85
1958 3122 8.641499 TCAACAAACAATAACAAAGCCTTTAG 57.359 30.769 0.00 0.00 0.00 1.85
1959 3123 8.254508 TCAACAAACAATAACAAAGCCTTTAGT 58.745 29.630 0.00 0.00 0.00 2.24
1960 3124 8.539674 CAACAAACAATAACAAAGCCTTTAGTC 58.460 33.333 0.00 0.00 0.00 2.59
1961 3125 7.207383 ACAAACAATAACAAAGCCTTTAGTCC 58.793 34.615 0.00 0.00 0.00 3.85
1962 3126 5.977489 ACAATAACAAAGCCTTTAGTCCC 57.023 39.130 0.00 0.00 0.00 4.46
1963 3127 5.390387 ACAATAACAAAGCCTTTAGTCCCA 58.610 37.500 0.00 0.00 0.00 4.37
1964 3128 5.836358 ACAATAACAAAGCCTTTAGTCCCAA 59.164 36.000 0.00 0.00 0.00 4.12
1965 3129 6.325286 ACAATAACAAAGCCTTTAGTCCCAAA 59.675 34.615 0.00 0.00 0.00 3.28
1966 3130 4.665833 AACAAAGCCTTTAGTCCCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
1967 3131 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
1968 3132 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
1969 3133 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
1970 3134 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
1971 3135 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
1972 3136 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
1981 3145 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
1982 3146 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
1983 3147 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
1984 3148 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
1985 3149 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
1986 3150 1.134371 CAAGTTGGGGTAGGCTAGAGC 60.134 57.143 0.00 0.00 41.14 4.09
1987 3151 0.340208 AGTTGGGGTAGGCTAGAGCT 59.660 55.000 0.00 0.00 41.70 4.09
1988 3152 0.466124 GTTGGGGTAGGCTAGAGCTG 59.534 60.000 0.00 0.00 41.70 4.24
1989 3153 0.338467 TTGGGGTAGGCTAGAGCTGA 59.662 55.000 0.00 0.00 41.70 4.26
1990 3154 0.338467 TGGGGTAGGCTAGAGCTGAA 59.662 55.000 0.00 0.00 41.70 3.02
1991 3155 1.273609 TGGGGTAGGCTAGAGCTGAAA 60.274 52.381 0.00 0.00 41.70 2.69
1992 3156 1.139256 GGGGTAGGCTAGAGCTGAAAC 59.861 57.143 0.00 0.00 41.70 2.78
1993 3157 1.139256 GGGTAGGCTAGAGCTGAAACC 59.861 57.143 0.00 4.43 41.70 3.27
1994 3158 1.139256 GGTAGGCTAGAGCTGAAACCC 59.861 57.143 0.00 0.00 41.70 4.11
1995 3159 1.831736 GTAGGCTAGAGCTGAAACCCA 59.168 52.381 0.00 0.00 41.70 4.51
1996 3160 1.589414 AGGCTAGAGCTGAAACCCAT 58.411 50.000 0.00 0.00 41.70 4.00
1997 3161 2.764269 AGGCTAGAGCTGAAACCCATA 58.236 47.619 0.00 0.00 41.70 2.74
1998 3162 3.115390 AGGCTAGAGCTGAAACCCATAA 58.885 45.455 0.00 0.00 41.70 1.90
1999 3163 3.135530 AGGCTAGAGCTGAAACCCATAAG 59.864 47.826 0.00 0.00 41.70 1.73
2000 3164 3.134804 GGCTAGAGCTGAAACCCATAAGA 59.865 47.826 0.00 0.00 41.70 2.10
2001 3165 4.202409 GGCTAGAGCTGAAACCCATAAGAT 60.202 45.833 0.00 0.00 41.70 2.40
2002 3166 4.994217 GCTAGAGCTGAAACCCATAAGATC 59.006 45.833 0.00 0.00 38.21 2.75
2003 3167 5.221621 GCTAGAGCTGAAACCCATAAGATCT 60.222 44.000 0.00 0.00 38.78 2.75
2004 3168 5.289083 AGAGCTGAAACCCATAAGATCTC 57.711 43.478 0.00 0.00 29.78 2.75
2005 3169 4.054671 GAGCTGAAACCCATAAGATCTCG 58.945 47.826 0.00 0.00 0.00 4.04
2006 3170 2.545946 GCTGAAACCCATAAGATCTCGC 59.454 50.000 0.00 0.00 0.00 5.03
2007 3171 3.797039 CTGAAACCCATAAGATCTCGCA 58.203 45.455 0.00 0.00 0.00 5.10
2008 3172 4.191544 CTGAAACCCATAAGATCTCGCAA 58.808 43.478 0.00 0.00 0.00 4.85
2009 3173 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
2010 3174 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
2011 3175 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
2012 3176 2.158900 ACCCATAAGATCTCGCAACCAG 60.159 50.000 0.00 0.00 0.00 4.00
2013 3177 1.869767 CCATAAGATCTCGCAACCAGC 59.130 52.381 0.00 0.00 40.87 4.85
2014 3178 1.869767 CATAAGATCTCGCAACCAGCC 59.130 52.381 0.00 0.00 41.38 4.85
2015 3179 0.901827 TAAGATCTCGCAACCAGCCA 59.098 50.000 0.00 0.00 41.38 4.75
2016 3180 0.036732 AAGATCTCGCAACCAGCCAA 59.963 50.000 0.00 0.00 41.38 4.52
2017 3181 0.392193 AGATCTCGCAACCAGCCAAG 60.392 55.000 0.00 0.00 41.38 3.61
2018 3182 0.674895 GATCTCGCAACCAGCCAAGT 60.675 55.000 0.00 0.00 41.38 3.16
2019 3183 0.250901 ATCTCGCAACCAGCCAAGTT 60.251 50.000 0.00 0.00 41.38 2.66
2020 3184 0.884704 TCTCGCAACCAGCCAAGTTC 60.885 55.000 0.00 0.00 41.38 3.01
2021 3185 0.886490 CTCGCAACCAGCCAAGTTCT 60.886 55.000 0.00 0.00 41.38 3.01
2022 3186 0.394938 TCGCAACCAGCCAAGTTCTA 59.605 50.000 0.00 0.00 41.38 2.10
2023 3187 0.798776 CGCAACCAGCCAAGTTCTAG 59.201 55.000 0.00 0.00 41.38 2.43
2024 3188 0.523519 GCAACCAGCCAAGTTCTAGC 59.476 55.000 0.00 0.00 37.23 3.42
2025 3189 1.168714 CAACCAGCCAAGTTCTAGCC 58.831 55.000 0.00 0.00 0.00 3.93
2026 3190 1.068121 AACCAGCCAAGTTCTAGCCT 58.932 50.000 0.00 0.00 0.00 4.58
2027 3191 1.952621 ACCAGCCAAGTTCTAGCCTA 58.047 50.000 0.00 0.00 0.00 3.93
2028 3192 1.834263 ACCAGCCAAGTTCTAGCCTAG 59.166 52.381 0.00 0.00 0.00 3.02
2029 3193 1.474143 CCAGCCAAGTTCTAGCCTAGC 60.474 57.143 0.00 0.00 0.00 3.42
2030 3194 0.833949 AGCCAAGTTCTAGCCTAGCC 59.166 55.000 0.00 0.00 0.00 3.93
2031 3195 0.179043 GCCAAGTTCTAGCCTAGCCC 60.179 60.000 0.00 0.00 0.00 5.19
2032 3196 1.204146 CCAAGTTCTAGCCTAGCCCA 58.796 55.000 0.00 0.00 0.00 5.36
2033 3197 1.559682 CCAAGTTCTAGCCTAGCCCAA 59.440 52.381 0.00 0.00 0.00 4.12
2034 3198 2.633488 CAAGTTCTAGCCTAGCCCAAC 58.367 52.381 0.00 0.00 0.00 3.77
2035 3199 1.205055 AGTTCTAGCCTAGCCCAACC 58.795 55.000 0.00 0.00 0.00 3.77
2036 3200 0.909623 GTTCTAGCCTAGCCCAACCA 59.090 55.000 0.00 0.00 0.00 3.67
2037 3201 1.280998 GTTCTAGCCTAGCCCAACCAA 59.719 52.381 0.00 0.00 0.00 3.67
2038 3202 0.909623 TCTAGCCTAGCCCAACCAAC 59.090 55.000 0.00 0.00 0.00 3.77
2039 3203 0.107165 CTAGCCTAGCCCAACCAACC 60.107 60.000 0.00 0.00 0.00 3.77
2040 3204 0.842905 TAGCCTAGCCCAACCAACCA 60.843 55.000 0.00 0.00 0.00 3.67
2041 3205 1.228737 GCCTAGCCCAACCAACCAA 60.229 57.895 0.00 0.00 0.00 3.67
2042 3206 0.614697 GCCTAGCCCAACCAACCAAT 60.615 55.000 0.00 0.00 0.00 3.16
2043 3207 1.474330 CCTAGCCCAACCAACCAATC 58.526 55.000 0.00 0.00 0.00 2.67
2044 3208 1.005924 CCTAGCCCAACCAACCAATCT 59.994 52.381 0.00 0.00 0.00 2.40
2045 3209 2.241176 CCTAGCCCAACCAACCAATCTA 59.759 50.000 0.00 0.00 0.00 1.98
2046 3210 2.990740 AGCCCAACCAACCAATCTAA 57.009 45.000 0.00 0.00 0.00 2.10
2047 3211 2.807676 AGCCCAACCAACCAATCTAAG 58.192 47.619 0.00 0.00 0.00 2.18
2048 3212 2.378547 AGCCCAACCAACCAATCTAAGA 59.621 45.455 0.00 0.00 0.00 2.10
2049 3213 3.161866 GCCCAACCAACCAATCTAAGAA 58.838 45.455 0.00 0.00 0.00 2.52
2050 3214 3.056821 GCCCAACCAACCAATCTAAGAAC 60.057 47.826 0.00 0.00 0.00 3.01
2051 3215 4.407365 CCCAACCAACCAATCTAAGAACT 58.593 43.478 0.00 0.00 0.00 3.01
2052 3216 4.832823 CCCAACCAACCAATCTAAGAACTT 59.167 41.667 0.00 0.00 0.00 2.66
2053 3217 5.278957 CCCAACCAACCAATCTAAGAACTTG 60.279 44.000 0.00 0.00 0.00 3.16
2054 3218 5.278957 CCAACCAACCAATCTAAGAACTTGG 60.279 44.000 0.00 0.00 44.06 3.61
2060 3224 4.407365 CCAATCTAAGAACTTGGTTGGGT 58.593 43.478 16.21 0.00 35.70 4.51
2061 3225 4.832823 CCAATCTAAGAACTTGGTTGGGTT 59.167 41.667 16.21 0.00 35.70 4.11
2062 3226 6.007703 CCAATCTAAGAACTTGGTTGGGTTA 58.992 40.000 16.21 0.00 35.70 2.85
2063 3227 6.151144 CCAATCTAAGAACTTGGTTGGGTTAG 59.849 42.308 16.21 0.00 35.70 2.34
2064 3228 5.237236 TCTAAGAACTTGGTTGGGTTAGG 57.763 43.478 0.00 0.00 0.00 2.69
2065 3229 2.287977 AGAACTTGGTTGGGTTAGGC 57.712 50.000 0.00 0.00 0.00 3.93
2066 3230 1.780919 AGAACTTGGTTGGGTTAGGCT 59.219 47.619 0.00 0.00 0.00 4.58
2067 3231 2.983898 AGAACTTGGTTGGGTTAGGCTA 59.016 45.455 0.00 0.00 0.00 3.93
2068 3232 3.009143 AGAACTTGGTTGGGTTAGGCTAG 59.991 47.826 0.00 0.00 0.00 3.42
2069 3233 1.004394 ACTTGGTTGGGTTAGGCTAGC 59.996 52.381 6.04 6.04 0.00 3.42
2070 3234 0.330267 TTGGTTGGGTTAGGCTAGCC 59.670 55.000 27.19 27.19 36.22 3.93
2094 3258 8.301002 GCCCAACTTGTTTAAATACTTGTGATA 58.699 33.333 0.00 0.00 0.00 2.15
2113 3277 7.939782 TGTGATAAATTTGACACACTCAACAT 58.060 30.769 20.34 0.00 38.70 2.71
2127 3381 0.881118 CAACATCCCAAAGGTCCACG 59.119 55.000 0.00 0.00 0.00 4.94
2288 3569 1.005450 TGGGGGAACAGGCTCATTTAC 59.995 52.381 0.00 0.00 0.00 2.01
2295 3576 4.280929 GGAACAGGCTCATTTACCAAGTTT 59.719 41.667 0.00 0.00 29.88 2.66
2368 3651 5.520376 AGCCAAAGGATAATTCCATTTCG 57.480 39.130 0.00 0.00 45.30 3.46
2414 3697 2.172930 AGCATCTGATGATTGCAGGAGT 59.827 45.455 21.30 0.00 34.20 3.85
2415 3698 2.950309 GCATCTGATGATTGCAGGAGTT 59.050 45.455 21.30 0.00 34.20 3.01
2416 3699 3.243101 GCATCTGATGATTGCAGGAGTTG 60.243 47.826 21.30 0.00 34.20 3.16
2470 3883 6.884096 TCTGTTGCTTTGTGTTTGTTATTG 57.116 33.333 0.00 0.00 0.00 1.90
2504 3917 6.291377 TCATAAATGCACACCCTAGAGATTC 58.709 40.000 0.00 0.00 0.00 2.52
2555 4000 1.154413 GCAAGACACGGTTCATGCG 60.154 57.895 0.81 0.00 0.00 4.73
2572 4023 5.879237 TCATGCGTCATCCTTGTTATTTTC 58.121 37.500 0.00 0.00 0.00 2.29
2579 4030 6.458751 CGTCATCCTTGTTATTTTCCATGGAG 60.459 42.308 15.53 0.00 38.04 3.86
2767 4458 1.129326 GAACCAGACACGTGACGAAG 58.871 55.000 25.01 12.48 0.00 3.79
2833 4524 1.197721 GTCAAAGTTCCTGATGGCACG 59.802 52.381 0.00 0.00 34.63 5.34
2844 4542 2.518836 GATGGCACGCACTCAGCAAC 62.519 60.000 0.00 0.00 46.13 4.17
2873 4571 6.567701 CGTCTCAGATCTATAGCAAGAACTCC 60.568 46.154 0.00 0.00 0.00 3.85
2891 4589 1.681793 TCCGTGCTGCTATTAGACCTC 59.318 52.381 0.00 0.00 0.00 3.85
2896 4594 4.116238 GTGCTGCTATTAGACCTCTGTTC 58.884 47.826 0.00 0.00 0.00 3.18
2911 4612 5.948162 ACCTCTGTTCCGTCAGTAGTTATTA 59.052 40.000 0.00 0.00 36.85 0.98
2920 4621 7.833786 TCCGTCAGTAGTTATTACAGTTTCAT 58.166 34.615 0.00 0.00 34.56 2.57
2963 4665 4.319046 GCCGCAGTCTGATAATAACATGTG 60.319 45.833 3.32 0.00 0.00 3.21
2969 4671 7.907045 GCAGTCTGATAATAACATGTGAACTTG 59.093 37.037 3.32 0.00 0.00 3.16
2974 4676 7.353525 TGATAATAACATGTGAACTTGGGGAT 58.646 34.615 0.00 0.00 0.00 3.85
2978 4680 5.628797 AACATGTGAACTTGGGGATTTTT 57.371 34.783 0.00 0.00 0.00 1.94
3004 4706 3.497332 TGTTAGTGTCACCTGTCTAGCT 58.503 45.455 0.00 0.00 0.00 3.32
3012 4714 6.070538 AGTGTCACCTGTCTAGCTGATATTTT 60.071 38.462 0.00 0.00 0.00 1.82
3020 4722 6.121590 TGTCTAGCTGATATTTTGATGGCAA 58.878 36.000 0.00 0.00 0.00 4.52
3044 4746 3.282021 GCCTGATCTTTAGACCATTGCA 58.718 45.455 0.00 0.00 0.00 4.08
3048 4750 5.591472 CCTGATCTTTAGACCATTGCATTCA 59.409 40.000 0.00 0.00 0.00 2.57
3051 4753 8.750515 TGATCTTTAGACCATTGCATTCATTA 57.249 30.769 0.00 0.00 0.00 1.90
3093 4795 3.652869 TGTTCTGAAGGAAGGAGGAATGT 59.347 43.478 0.00 0.00 34.23 2.71
3155 4857 8.370493 ACTGTCATGAACTATATACATTGTGC 57.630 34.615 0.00 0.00 0.00 4.57
3159 4861 8.232513 GTCATGAACTATATACATTGTGCCATG 58.767 37.037 0.00 0.00 35.56 3.66
3175 4877 2.014857 CCATGTCTTGCTGTCCATCTG 58.985 52.381 0.00 0.00 0.00 2.90
3187 4922 0.543277 TCCATCTGGTGCACTCATCC 59.457 55.000 17.98 0.00 36.34 3.51
3216 4951 7.331791 GGGTTCTATAAGTGTCTGAAACTGAT 58.668 38.462 0.24 1.97 0.00 2.90
3365 5109 6.487331 AGCATCGATAGCTAACTTGTACTAGT 59.513 38.462 17.19 3.98 41.32 2.57
3369 5113 7.052873 TCGATAGCTAACTTGTACTAGTTCCT 58.947 38.462 23.08 20.82 39.08 3.36
3375 5119 6.919115 GCTAACTTGTACTAGTTCCTATGAGC 59.081 42.308 23.08 20.22 39.08 4.26
3427 5172 5.733620 AGATGCACATTTGGAATTTCACT 57.266 34.783 0.00 0.00 0.00 3.41
3445 5190 3.072330 TCACTGCTTTGGGTTCATACTCA 59.928 43.478 0.00 0.00 31.29 3.41
3496 5242 3.218398 CAAACGCAAATGACTCGACTTC 58.782 45.455 0.00 0.00 0.00 3.01
3511 5257 1.871676 GACTTCGAGAAAAAGGCGGTT 59.128 47.619 0.00 0.00 0.00 4.44
3512 5258 2.289820 GACTTCGAGAAAAAGGCGGTTT 59.710 45.455 0.00 0.00 0.00 3.27
3513 5259 2.686405 ACTTCGAGAAAAAGGCGGTTTT 59.314 40.909 2.18 2.18 40.26 2.43
3519 5269 2.365293 AGAAAAAGGCGGTTTTGCAGAT 59.635 40.909 6.67 0.00 38.43 2.90
3567 5317 6.252655 GCATGGTTAATTTTACGATGGTTGTC 59.747 38.462 10.98 0.00 33.81 3.18
3576 5326 1.876799 ACGATGGTTGTCGATTGCAAA 59.123 42.857 1.71 0.00 44.06 3.68
3584 5334 1.032114 GTCGATTGCAAAGGAGGGGG 61.032 60.000 1.71 0.00 0.00 5.40
3598 5348 4.875713 GGGGCGGCCGATGTCAAT 62.876 66.667 33.48 0.00 0.00 2.57
3599 5349 2.828549 GGGCGGCCGATGTCAATT 60.829 61.111 33.48 0.00 0.00 2.32
3600 5350 2.715624 GGCGGCCGATGTCAATTC 59.284 61.111 33.48 7.28 0.00 2.17
3601 5351 1.819632 GGCGGCCGATGTCAATTCT 60.820 57.895 33.48 0.00 0.00 2.40
3602 5352 1.353103 GCGGCCGATGTCAATTCTG 59.647 57.895 33.48 0.00 0.00 3.02
3603 5353 1.353103 CGGCCGATGTCAATTCTGC 59.647 57.895 24.07 0.00 0.00 4.26
3604 5354 1.368345 CGGCCGATGTCAATTCTGCA 61.368 55.000 24.07 0.00 0.00 4.41
3605 5355 0.810648 GGCCGATGTCAATTCTGCAA 59.189 50.000 0.00 0.00 0.00 4.08
3606 5356 1.202222 GGCCGATGTCAATTCTGCAAG 60.202 52.381 0.00 0.00 0.00 4.01
3607 5357 1.739466 GCCGATGTCAATTCTGCAAGA 59.261 47.619 0.00 0.00 44.68 3.02
3619 5369 1.696336 TCTGCAAGAAAGAGCTGGAGT 59.304 47.619 0.00 0.00 42.31 3.85
3652 5402 6.675002 GCATCTTCTACTCAAGTGCAGATTTG 60.675 42.308 0.00 0.00 33.85 2.32
3661 5411 2.718107 GCAGATTTGCTAGGCGCC 59.282 61.111 21.89 21.89 46.95 6.53
3697 5447 1.453155 AGCGTGGCTTGGTCTTATTG 58.547 50.000 0.00 0.00 33.89 1.90
3730 5480 2.422276 GCATTGGCGAAACTTCAAGT 57.578 45.000 0.00 0.00 0.00 3.16
3746 5496 0.546122 AAGTGAGTGTTGGAGTGGCA 59.454 50.000 0.00 0.00 0.00 4.92
3784 5542 7.663081 TCTTATTCACAGATTTCTCTTGCTTGT 59.337 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.390297 CGGTGAAAGACAAAAAGCCAAAAA 59.610 37.500 0.00 0.00 0.00 1.94
4 5 3.929610 CGGTGAAAGACAAAAAGCCAAAA 59.070 39.130 0.00 0.00 0.00 2.44
5 6 3.516615 CGGTGAAAGACAAAAAGCCAAA 58.483 40.909 0.00 0.00 0.00 3.28
6 7 2.159170 CCGGTGAAAGACAAAAAGCCAA 60.159 45.455 0.00 0.00 0.00 4.52
7 8 1.407258 CCGGTGAAAGACAAAAAGCCA 59.593 47.619 0.00 0.00 0.00 4.75
8 9 1.407618 ACCGGTGAAAGACAAAAAGCC 59.592 47.619 6.12 0.00 0.00 4.35
9 10 2.357952 AGACCGGTGAAAGACAAAAAGC 59.642 45.455 14.63 0.00 0.00 3.51
10 11 4.632538 AAGACCGGTGAAAGACAAAAAG 57.367 40.909 14.63 0.00 0.00 2.27
11 12 4.703093 AGAAAGACCGGTGAAAGACAAAAA 59.297 37.500 14.63 0.00 0.00 1.94
12 13 4.266714 AGAAAGACCGGTGAAAGACAAAA 58.733 39.130 14.63 0.00 0.00 2.44
13 14 3.881220 AGAAAGACCGGTGAAAGACAAA 58.119 40.909 14.63 0.00 0.00 2.83
14 15 3.553828 AGAAAGACCGGTGAAAGACAA 57.446 42.857 14.63 0.00 0.00 3.18
15 16 4.675976 TTAGAAAGACCGGTGAAAGACA 57.324 40.909 14.63 0.00 0.00 3.41
16 17 5.055144 AGTTTAGAAAGACCGGTGAAAGAC 58.945 41.667 14.63 0.00 0.00 3.01
17 18 5.286267 AGTTTAGAAAGACCGGTGAAAGA 57.714 39.130 14.63 0.00 0.00 2.52
18 19 6.373186 AAAGTTTAGAAAGACCGGTGAAAG 57.627 37.500 14.63 0.00 0.00 2.62
19 20 6.404954 CCAAAAGTTTAGAAAGACCGGTGAAA 60.405 38.462 14.63 0.00 0.00 2.69
20 21 5.066764 CCAAAAGTTTAGAAAGACCGGTGAA 59.933 40.000 14.63 0.00 0.00 3.18
21 22 4.577283 CCAAAAGTTTAGAAAGACCGGTGA 59.423 41.667 14.63 0.00 0.00 4.02
22 23 4.577283 TCCAAAAGTTTAGAAAGACCGGTG 59.423 41.667 14.63 0.00 0.00 4.94
23 24 4.577693 GTCCAAAAGTTTAGAAAGACCGGT 59.422 41.667 6.92 6.92 0.00 5.28
24 25 4.577283 TGTCCAAAAGTTTAGAAAGACCGG 59.423 41.667 0.00 0.00 0.00 5.28
25 26 5.744666 TGTCCAAAAGTTTAGAAAGACCG 57.255 39.130 0.00 0.00 0.00 4.79
26 27 8.766000 TTTTTGTCCAAAAGTTTAGAAAGACC 57.234 30.769 5.45 0.00 40.83 3.85
85 86 6.380095 AACGTGCCTACAGTGAAATAAAAA 57.620 33.333 0.00 0.00 0.00 1.94
86 87 6.380095 AAACGTGCCTACAGTGAAATAAAA 57.620 33.333 0.00 0.00 0.00 1.52
87 88 6.380095 AAAACGTGCCTACAGTGAAATAAA 57.620 33.333 0.00 0.00 0.00 1.40
88 89 6.380095 AAAAACGTGCCTACAGTGAAATAA 57.620 33.333 0.00 0.00 0.00 1.40
90 91 4.911514 AAAAACGTGCCTACAGTGAAAT 57.088 36.364 0.00 0.00 0.00 2.17
113 114 4.795278 GCAAATCCATGTCTTTAGCGAAAG 59.205 41.667 12.62 12.62 43.05 2.62
114 115 4.458989 AGCAAATCCATGTCTTTAGCGAAA 59.541 37.500 0.00 0.00 0.00 3.46
115 116 4.009675 AGCAAATCCATGTCTTTAGCGAA 58.990 39.130 0.00 0.00 0.00 4.70
116 117 3.609853 AGCAAATCCATGTCTTTAGCGA 58.390 40.909 0.00 0.00 0.00 4.93
117 118 4.361451 AAGCAAATCCATGTCTTTAGCG 57.639 40.909 0.00 0.00 0.00 4.26
118 119 5.958955 AGAAAGCAAATCCATGTCTTTAGC 58.041 37.500 0.00 0.00 31.48 3.09
119 120 6.092670 TCGAGAAAGCAAATCCATGTCTTTAG 59.907 38.462 0.00 0.00 31.48 1.85
120 121 5.937540 TCGAGAAAGCAAATCCATGTCTTTA 59.062 36.000 0.00 0.00 31.48 1.85
121 122 4.761739 TCGAGAAAGCAAATCCATGTCTTT 59.238 37.500 0.00 0.00 32.90 2.52
122 123 4.326826 TCGAGAAAGCAAATCCATGTCTT 58.673 39.130 0.00 0.00 0.00 3.01
123 124 3.937706 CTCGAGAAAGCAAATCCATGTCT 59.062 43.478 6.58 0.00 0.00 3.41
124 125 3.064545 CCTCGAGAAAGCAAATCCATGTC 59.935 47.826 15.71 0.00 0.00 3.06
125 126 3.012518 CCTCGAGAAAGCAAATCCATGT 58.987 45.455 15.71 0.00 0.00 3.21
126 127 2.357009 CCCTCGAGAAAGCAAATCCATG 59.643 50.000 15.71 0.00 0.00 3.66
127 128 2.648059 CCCTCGAGAAAGCAAATCCAT 58.352 47.619 15.71 0.00 0.00 3.41
128 129 1.340017 CCCCTCGAGAAAGCAAATCCA 60.340 52.381 15.71 0.00 0.00 3.41
129 130 1.383523 CCCCTCGAGAAAGCAAATCC 58.616 55.000 15.71 0.00 0.00 3.01
130 131 0.735471 GCCCCTCGAGAAAGCAAATC 59.265 55.000 15.71 0.00 0.00 2.17
131 132 0.038166 TGCCCCTCGAGAAAGCAAAT 59.962 50.000 15.71 0.00 0.00 2.32
132 133 0.889186 GTGCCCCTCGAGAAAGCAAA 60.889 55.000 20.62 2.43 34.79 3.68
133 134 1.302511 GTGCCCCTCGAGAAAGCAA 60.303 57.895 20.62 7.21 34.79 3.91
134 135 2.347490 GTGCCCCTCGAGAAAGCA 59.653 61.111 15.71 16.32 0.00 3.91
135 136 2.579684 ATCGTGCCCCTCGAGAAAGC 62.580 60.000 15.71 13.80 40.57 3.51
136 137 0.528684 GATCGTGCCCCTCGAGAAAG 60.529 60.000 15.71 2.77 40.57 2.62
137 138 1.254975 TGATCGTGCCCCTCGAGAAA 61.255 55.000 15.71 0.00 40.57 2.52
138 139 1.043116 ATGATCGTGCCCCTCGAGAA 61.043 55.000 15.71 0.00 40.57 2.87
139 140 1.455773 ATGATCGTGCCCCTCGAGA 60.456 57.895 15.71 0.00 40.57 4.04
140 141 1.300465 CATGATCGTGCCCCTCGAG 60.300 63.158 5.13 5.13 40.57 4.04
141 142 2.814604 CATGATCGTGCCCCTCGA 59.185 61.111 1.07 0.00 41.45 4.04
142 143 2.969238 GCATGATCGTGCCCCTCG 60.969 66.667 26.48 0.00 39.18 4.63
148 149 0.726827 TTCGAAAGGCATGATCGTGC 59.273 50.000 28.35 28.35 44.31 5.34
149 150 3.163594 GTTTTCGAAAGGCATGATCGTG 58.836 45.455 10.98 10.76 37.79 4.35
150 151 2.811431 TGTTTTCGAAAGGCATGATCGT 59.189 40.909 10.98 0.00 37.79 3.73
151 152 3.469899 TGTTTTCGAAAGGCATGATCG 57.530 42.857 10.98 0.29 37.90 3.69
152 153 6.523676 TTTTTGTTTTCGAAAGGCATGATC 57.476 33.333 10.98 0.00 35.01 2.92
191 192 1.039856 GCCCTGCCTCTTGTGAAAAA 58.960 50.000 0.00 0.00 0.00 1.94
192 193 0.827507 GGCCCTGCCTCTTGTGAAAA 60.828 55.000 0.00 0.00 46.69 2.29
193 194 1.228552 GGCCCTGCCTCTTGTGAAA 60.229 57.895 0.00 0.00 46.69 2.69
194 195 2.436109 GGCCCTGCCTCTTGTGAA 59.564 61.111 0.00 0.00 46.69 3.18
209 210 1.901650 CTGTTTCGAAGAGGCACGGC 61.902 60.000 0.00 0.00 38.43 5.68
273 274 3.512516 GAGAGGCACGGGCAATGC 61.513 66.667 13.89 0.00 43.71 3.56
276 277 2.668185 TTTTCGAGAGGCACGGGCAA 62.668 55.000 13.89 0.00 43.71 4.52
277 278 3.171828 TTTTCGAGAGGCACGGGCA 62.172 57.895 13.89 0.00 43.71 5.36
278 279 2.358247 TTTTCGAGAGGCACGGGC 60.358 61.111 0.00 0.00 40.13 6.13
320 321 1.542915 CAAAACCATGCCTCTCACAGG 59.457 52.381 0.00 0.00 46.82 4.00
333 334 5.376625 AGAGACATAGTGAAAGCAAAACCA 58.623 37.500 0.00 0.00 0.00 3.67
340 341 3.784701 TCCGAGAGACATAGTGAAAGC 57.215 47.619 0.00 0.00 0.00 3.51
390 391 6.183360 GCAAAACCGTACCTTTTGTGAAAAAT 60.183 34.615 18.10 0.00 39.70 1.82
393 394 4.082136 AGCAAAACCGTACCTTTTGTGAAA 60.082 37.500 18.10 0.00 39.70 2.69
396 397 3.430333 AGCAAAACCGTACCTTTTGTG 57.570 42.857 18.10 4.28 39.70 3.33
397 398 3.181484 GGAAGCAAAACCGTACCTTTTGT 60.181 43.478 18.10 6.04 39.70 2.83
398 399 3.181485 TGGAAGCAAAACCGTACCTTTTG 60.181 43.478 14.83 14.83 40.25 2.44
399 400 3.025262 TGGAAGCAAAACCGTACCTTTT 58.975 40.909 0.00 0.00 0.00 2.27
400 401 2.657143 TGGAAGCAAAACCGTACCTTT 58.343 42.857 0.00 0.00 0.00 3.11
405 407 4.901868 ACTCTTATGGAAGCAAAACCGTA 58.098 39.130 0.00 0.00 32.21 4.02
431 433 2.545742 GCAATTTCCAAGAAACACGCCT 60.546 45.455 0.00 0.00 0.00 5.52
438 440 9.883142 TCTTTTCTAAAAGCAATTTCCAAGAAA 57.117 25.926 9.80 7.06 43.85 2.52
439 441 9.883142 TTCTTTTCTAAAAGCAATTTCCAAGAA 57.117 25.926 9.80 0.00 43.85 2.52
521 523 9.130661 TCTCATGTTGATAGGTTTTGAAGAAAA 57.869 29.630 0.00 0.00 0.00 2.29
522 524 8.690203 TCTCATGTTGATAGGTTTTGAAGAAA 57.310 30.769 0.00 0.00 0.00 2.52
526 528 9.605275 CTAGATCTCATGTTGATAGGTTTTGAA 57.395 33.333 0.00 0.00 0.00 2.69
533 535 9.605275 TTCAAAACTAGATCTCATGTTGATAGG 57.395 33.333 10.94 2.05 0.00 2.57
545 547 6.491394 CGTCGAGATCTTCAAAACTAGATCT 58.509 40.000 12.93 12.93 46.88 2.75
564 566 1.153901 GTTGGATTCCTCGCGTCGA 60.154 57.895 5.77 0.00 0.00 4.20
565 567 2.505498 CGTTGGATTCCTCGCGTCG 61.505 63.158 5.77 0.00 0.00 5.12
566 568 2.165301 CCGTTGGATTCCTCGCGTC 61.165 63.158 5.77 0.00 0.00 5.19
574 576 3.902261 ACCGTTTTTACCGTTGGATTC 57.098 42.857 0.00 0.00 0.00 2.52
583 585 5.688621 GTCCAAATCTCAAACCGTTTTTACC 59.311 40.000 0.00 0.00 0.00 2.85
586 588 5.105513 ACTGTCCAAATCTCAAACCGTTTTT 60.106 36.000 0.00 0.00 0.00 1.94
676 684 7.829378 ACCGAAATCACTAATTGAGAAGTAC 57.171 36.000 0.00 0.00 37.77 2.73
712 720 7.604545 AGAAAAAGAAGGATGTAGTAGAACAGC 59.395 37.037 0.00 0.00 35.04 4.40
713 721 9.495572 AAGAAAAAGAAGGATGTAGTAGAACAG 57.504 33.333 0.00 0.00 31.70 3.16
721 729 9.334693 CGAAATGAAAGAAAAAGAAGGATGTAG 57.665 33.333 0.00 0.00 0.00 2.74
780 788 1.151677 AAGCCAGTGGTTCCCCCTA 60.152 57.895 11.74 0.00 0.00 3.53
781 789 2.452491 AAGCCAGTGGTTCCCCCT 60.452 61.111 11.74 0.00 0.00 4.79
787 795 3.487372 GGTTAGAAAGAAGCCAGTGGTT 58.513 45.455 11.74 0.44 34.19 3.67
788 796 2.550208 CGGTTAGAAAGAAGCCAGTGGT 60.550 50.000 11.74 0.00 0.00 4.16
798 834 3.236816 CGCTTCGTAACGGTTAGAAAGA 58.763 45.455 19.00 8.11 0.00 2.52
849 888 4.643387 AGGAGCGTGGGCCAACAC 62.643 66.667 8.40 6.57 41.24 3.32
896 948 3.379445 GCGTCGGGTTGGAGAGGA 61.379 66.667 0.00 0.00 0.00 3.71
1094 1147 6.670695 AACTTAAGGCAGAATCAAATTGGT 57.329 33.333 7.53 0.00 0.00 3.67
1097 1150 8.962884 AACAAAACTTAAGGCAGAATCAAATT 57.037 26.923 7.53 0.00 0.00 1.82
1173 1282 4.717233 TCGCCATGCACAATTAAGAATT 57.283 36.364 0.00 0.00 0.00 2.17
1204 2221 5.186021 TCACCTTCAGAGAAGATAACTCCAC 59.814 44.000 8.26 0.00 35.27 4.02
1207 2224 5.348164 GCTCACCTTCAGAGAAGATAACTC 58.652 45.833 8.26 0.00 35.09 3.01
1208 2225 4.142271 CGCTCACCTTCAGAGAAGATAACT 60.142 45.833 8.26 0.00 35.09 2.24
1209 2226 4.109050 CGCTCACCTTCAGAGAAGATAAC 58.891 47.826 8.26 0.00 35.09 1.89
1210 2227 3.764434 ACGCTCACCTTCAGAGAAGATAA 59.236 43.478 8.26 0.00 35.09 1.75
1211 2228 3.357203 ACGCTCACCTTCAGAGAAGATA 58.643 45.455 8.26 0.00 35.09 1.98
1212 2229 2.165437 GACGCTCACCTTCAGAGAAGAT 59.835 50.000 8.26 0.00 35.09 2.40
1251 2269 3.945285 AGCTCTTCCTTTTCGTCAAAACA 59.055 39.130 0.00 0.00 0.00 2.83
1278 2296 4.351111 ACTCCTATTCAATGGGGTCATACC 59.649 45.833 0.00 0.00 29.66 2.73
1406 2429 0.179059 CCCAACCCAACAAGCAAACC 60.179 55.000 0.00 0.00 0.00 3.27
1498 2562 2.083774 TGAAGCCACAATTAAGCTCCG 58.916 47.619 0.00 0.00 35.30 4.63
1517 2581 7.621428 ATTCAAATGACTGAAGTATGGAGTG 57.379 36.000 0.00 0.00 38.66 3.51
1571 2635 2.548480 AGTCGTAAAGGAGCAAGCAAAC 59.452 45.455 0.00 0.00 0.00 2.93
1641 2705 4.682021 ACTGGGGATTCTTTTCCTTGAT 57.318 40.909 0.00 0.00 35.97 2.57
1691 2755 2.648059 CCCTTCAAGTTAGGATGCTGG 58.352 52.381 0.00 0.00 34.56 4.85
1739 2803 8.736244 GTTACCACATAACACTAAAATGGTCAT 58.264 33.333 0.00 0.00 42.52 3.06
1776 2856 9.216117 ACAACTACCAGAAAGTAACATCATTAC 57.784 33.333 0.00 0.00 0.00 1.89
1886 3050 9.567776 TCTTCAACTAAATCTTGGATGTGTAAA 57.432 29.630 0.00 0.00 0.00 2.01
1887 3051 9.739276 ATCTTCAACTAAATCTTGGATGTGTAA 57.261 29.630 0.00 0.00 0.00 2.41
1888 3052 9.739276 AATCTTCAACTAAATCTTGGATGTGTA 57.261 29.630 0.00 0.00 0.00 2.90
1889 3053 8.641498 AATCTTCAACTAAATCTTGGATGTGT 57.359 30.769 0.00 0.00 0.00 3.72
1911 3075 9.865484 GTTGAAGACAAGAGTGTAAAGTAAATC 57.135 33.333 0.00 0.00 38.41 2.17
1928 3092 6.533367 GGCTTTGTTATTGTTTGTTGAAGACA 59.467 34.615 0.00 0.00 36.19 3.41
1929 3093 6.756542 AGGCTTTGTTATTGTTTGTTGAAGAC 59.243 34.615 0.00 0.00 0.00 3.01
1931 3095 7.538303 AAGGCTTTGTTATTGTTTGTTGAAG 57.462 32.000 0.00 0.00 0.00 3.02
1936 3100 7.207383 GGACTAAAGGCTTTGTTATTGTTTGT 58.793 34.615 22.32 0.00 0.00 2.83
1937 3101 6.645003 GGGACTAAAGGCTTTGTTATTGTTTG 59.355 38.462 22.32 0.00 0.00 2.93
1938 3102 6.325286 TGGGACTAAAGGCTTTGTTATTGTTT 59.675 34.615 22.32 0.00 0.00 2.83
1939 3103 5.836358 TGGGACTAAAGGCTTTGTTATTGTT 59.164 36.000 22.32 0.00 0.00 2.83
1940 3104 5.390387 TGGGACTAAAGGCTTTGTTATTGT 58.610 37.500 22.32 10.58 0.00 2.71
1941 3105 5.975693 TGGGACTAAAGGCTTTGTTATTG 57.024 39.130 22.32 7.79 0.00 1.90
1942 3106 6.325286 TGTTTGGGACTAAAGGCTTTGTTATT 59.675 34.615 22.32 1.84 0.00 1.40
1943 3107 5.836358 TGTTTGGGACTAAAGGCTTTGTTAT 59.164 36.000 22.32 4.89 0.00 1.89
1945 3109 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
1946 3110 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
1947 3111 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
1948 3112 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
1949 3113 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
1950 3114 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
1951 3115 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
1962 3126 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
1963 3127 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
1964 3128 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
1965 3129 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
1966 3130 1.134371 GCTCTAGCCTACCCCAACTTG 60.134 57.143 0.00 0.00 34.31 3.16
1967 3131 1.205055 GCTCTAGCCTACCCCAACTT 58.795 55.000 0.00 0.00 34.31 2.66
1968 3132 0.340208 AGCTCTAGCCTACCCCAACT 59.660 55.000 0.00 0.00 43.38 3.16
1969 3133 0.466124 CAGCTCTAGCCTACCCCAAC 59.534 60.000 0.00 0.00 43.38 3.77
1970 3134 0.338467 TCAGCTCTAGCCTACCCCAA 59.662 55.000 0.00 0.00 43.38 4.12
1971 3135 0.338467 TTCAGCTCTAGCCTACCCCA 59.662 55.000 0.00 0.00 43.38 4.96
1972 3136 1.139256 GTTTCAGCTCTAGCCTACCCC 59.861 57.143 0.00 0.00 43.38 4.95
1973 3137 1.139256 GGTTTCAGCTCTAGCCTACCC 59.861 57.143 0.00 0.00 43.38 3.69
1974 3138 1.139256 GGGTTTCAGCTCTAGCCTACC 59.861 57.143 0.00 1.68 43.38 3.18
1975 3139 1.831736 TGGGTTTCAGCTCTAGCCTAC 59.168 52.381 0.00 0.00 43.38 3.18
1976 3140 2.247699 TGGGTTTCAGCTCTAGCCTA 57.752 50.000 0.00 0.00 43.38 3.93
1977 3141 1.589414 ATGGGTTTCAGCTCTAGCCT 58.411 50.000 0.00 0.00 43.38 4.58
1978 3142 3.134804 TCTTATGGGTTTCAGCTCTAGCC 59.865 47.826 0.00 0.00 43.38 3.93
1979 3143 4.408182 TCTTATGGGTTTCAGCTCTAGC 57.592 45.455 0.00 0.00 42.49 3.42
1980 3144 6.418057 AGATCTTATGGGTTTCAGCTCTAG 57.582 41.667 0.00 0.00 0.00 2.43
1981 3145 5.010112 CGAGATCTTATGGGTTTCAGCTCTA 59.990 44.000 0.00 0.00 0.00 2.43
1982 3146 4.202202 CGAGATCTTATGGGTTTCAGCTCT 60.202 45.833 0.00 0.00 0.00 4.09
1983 3147 4.054671 CGAGATCTTATGGGTTTCAGCTC 58.945 47.826 0.00 0.00 0.00 4.09
1984 3148 3.742640 GCGAGATCTTATGGGTTTCAGCT 60.743 47.826 0.00 0.00 0.00 4.24
1985 3149 2.545946 GCGAGATCTTATGGGTTTCAGC 59.454 50.000 0.00 0.00 0.00 4.26
1986 3150 3.797039 TGCGAGATCTTATGGGTTTCAG 58.203 45.455 0.00 0.00 0.00 3.02
1987 3151 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
1988 3152 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
1989 3153 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
1990 3154 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
1991 3155 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
1992 3156 2.487934 CTGGTTGCGAGATCTTATGGG 58.512 52.381 0.00 0.00 0.00 4.00
1993 3157 1.869767 GCTGGTTGCGAGATCTTATGG 59.130 52.381 0.00 0.00 0.00 2.74
1994 3158 1.869767 GGCTGGTTGCGAGATCTTATG 59.130 52.381 0.00 0.00 44.05 1.90
1995 3159 1.486310 TGGCTGGTTGCGAGATCTTAT 59.514 47.619 0.00 0.00 44.05 1.73
1996 3160 0.901827 TGGCTGGTTGCGAGATCTTA 59.098 50.000 0.00 0.00 44.05 2.10
1997 3161 0.036732 TTGGCTGGTTGCGAGATCTT 59.963 50.000 0.00 0.00 44.05 2.40
1998 3162 0.392193 CTTGGCTGGTTGCGAGATCT 60.392 55.000 0.00 0.00 44.05 2.75
1999 3163 0.674895 ACTTGGCTGGTTGCGAGATC 60.675 55.000 0.00 0.00 44.05 2.75
2000 3164 0.250901 AACTTGGCTGGTTGCGAGAT 60.251 50.000 0.00 0.00 44.05 2.75
2001 3165 0.884704 GAACTTGGCTGGTTGCGAGA 60.885 55.000 0.00 0.00 44.05 4.04
2002 3166 0.886490 AGAACTTGGCTGGTTGCGAG 60.886 55.000 0.00 0.00 44.05 5.03
2003 3167 0.394938 TAGAACTTGGCTGGTTGCGA 59.605 50.000 0.00 0.00 44.05 5.10
2004 3168 0.798776 CTAGAACTTGGCTGGTTGCG 59.201 55.000 0.93 0.00 44.05 4.85
2005 3169 0.523519 GCTAGAACTTGGCTGGTTGC 59.476 55.000 0.00 0.00 41.94 4.17
2006 3170 1.168714 GGCTAGAACTTGGCTGGTTG 58.831 55.000 0.00 0.00 0.00 3.77
2007 3171 1.068121 AGGCTAGAACTTGGCTGGTT 58.932 50.000 10.77 0.00 39.42 3.67
2008 3172 1.834263 CTAGGCTAGAACTTGGCTGGT 59.166 52.381 16.70 0.54 40.82 4.00
2009 3173 1.474143 GCTAGGCTAGAACTTGGCTGG 60.474 57.143 25.37 16.78 40.82 4.85
2010 3174 1.474143 GGCTAGGCTAGAACTTGGCTG 60.474 57.143 25.37 11.38 40.82 4.85
2011 3175 0.833949 GGCTAGGCTAGAACTTGGCT 59.166 55.000 25.37 14.89 42.84 4.75
2012 3176 0.179043 GGGCTAGGCTAGAACTTGGC 60.179 60.000 25.37 9.79 35.99 4.52
2013 3177 1.204146 TGGGCTAGGCTAGAACTTGG 58.796 55.000 25.37 0.00 0.00 3.61
2014 3178 2.633488 GTTGGGCTAGGCTAGAACTTG 58.367 52.381 25.37 0.00 0.00 3.16
2015 3179 1.560146 GGTTGGGCTAGGCTAGAACTT 59.440 52.381 25.37 0.00 0.00 2.66
2016 3180 1.205055 GGTTGGGCTAGGCTAGAACT 58.795 55.000 25.37 0.00 0.00 3.01
2017 3181 0.909623 TGGTTGGGCTAGGCTAGAAC 59.090 55.000 25.37 18.51 0.00 3.01
2018 3182 1.280998 GTTGGTTGGGCTAGGCTAGAA 59.719 52.381 25.37 7.86 0.00 2.10
2019 3183 0.909623 GTTGGTTGGGCTAGGCTAGA 59.090 55.000 25.37 1.14 0.00 2.43
2020 3184 0.107165 GGTTGGTTGGGCTAGGCTAG 60.107 60.000 17.33 17.33 0.00 3.42
2021 3185 0.842905 TGGTTGGTTGGGCTAGGCTA 60.843 55.000 16.80 7.37 0.00 3.93
2022 3186 1.725169 TTGGTTGGTTGGGCTAGGCT 61.725 55.000 16.80 0.00 0.00 4.58
2023 3187 0.614697 ATTGGTTGGTTGGGCTAGGC 60.615 55.000 8.00 8.00 0.00 3.93
2024 3188 1.005924 AGATTGGTTGGTTGGGCTAGG 59.994 52.381 0.00 0.00 0.00 3.02
2025 3189 2.514458 AGATTGGTTGGTTGGGCTAG 57.486 50.000 0.00 0.00 0.00 3.42
2026 3190 3.589735 TCTTAGATTGGTTGGTTGGGCTA 59.410 43.478 0.00 0.00 0.00 3.93
2027 3191 2.378547 TCTTAGATTGGTTGGTTGGGCT 59.621 45.455 0.00 0.00 0.00 5.19
2028 3192 2.802719 TCTTAGATTGGTTGGTTGGGC 58.197 47.619 0.00 0.00 0.00 5.36
2029 3193 4.407365 AGTTCTTAGATTGGTTGGTTGGG 58.593 43.478 0.00 0.00 0.00 4.12
2030 3194 5.278957 CCAAGTTCTTAGATTGGTTGGTTGG 60.279 44.000 6.47 0.00 38.92 3.77
2031 3195 5.772521 CCAAGTTCTTAGATTGGTTGGTTG 58.227 41.667 6.47 0.00 38.92 3.77
2039 3203 6.151144 CCTAACCCAACCAAGTTCTTAGATTG 59.849 42.308 0.00 0.00 0.00 2.67
2040 3204 6.246163 CCTAACCCAACCAAGTTCTTAGATT 58.754 40.000 0.00 0.00 0.00 2.40
2041 3205 5.806734 GCCTAACCCAACCAAGTTCTTAGAT 60.807 44.000 0.00 0.00 0.00 1.98
2042 3206 4.506095 GCCTAACCCAACCAAGTTCTTAGA 60.506 45.833 0.00 0.00 0.00 2.10
2043 3207 3.756963 GCCTAACCCAACCAAGTTCTTAG 59.243 47.826 0.00 0.00 0.00 2.18
2044 3208 3.396611 AGCCTAACCCAACCAAGTTCTTA 59.603 43.478 0.00 0.00 0.00 2.10
2045 3209 2.177016 AGCCTAACCCAACCAAGTTCTT 59.823 45.455 0.00 0.00 0.00 2.52
2046 3210 1.780919 AGCCTAACCCAACCAAGTTCT 59.219 47.619 0.00 0.00 0.00 3.01
2047 3211 2.287977 AGCCTAACCCAACCAAGTTC 57.712 50.000 0.00 0.00 0.00 3.01
2048 3212 2.554564 GCTAGCCTAACCCAACCAAGTT 60.555 50.000 2.29 0.00 0.00 2.66
2049 3213 1.004394 GCTAGCCTAACCCAACCAAGT 59.996 52.381 2.29 0.00 0.00 3.16
2050 3214 1.682087 GGCTAGCCTAACCCAACCAAG 60.682 57.143 27.17 0.00 0.00 3.61
2051 3215 0.330267 GGCTAGCCTAACCCAACCAA 59.670 55.000 27.17 0.00 0.00 3.67
2052 3216 1.568118 GGGCTAGCCTAACCCAACCA 61.568 60.000 32.18 0.00 43.64 3.67
2053 3217 1.226542 GGGCTAGCCTAACCCAACC 59.773 63.158 32.18 9.39 43.64 3.77
2054 3218 4.979657 GGGCTAGCCTAACCCAAC 57.020 61.111 32.18 10.15 43.64 3.77
2060 3224 3.518992 AAACAAGTTGGGCTAGCCTAA 57.481 42.857 32.18 29.66 34.10 2.69
2061 3225 4.644163 TTAAACAAGTTGGGCTAGCCTA 57.356 40.909 32.18 25.37 36.10 3.93
2062 3226 3.518992 TTAAACAAGTTGGGCTAGCCT 57.481 42.857 32.18 10.83 36.10 4.58
2063 3227 4.801330 ATTTAAACAAGTTGGGCTAGCC 57.199 40.909 26.55 26.55 0.00 3.93
2064 3228 6.510879 AGTATTTAAACAAGTTGGGCTAGC 57.489 37.500 6.04 6.04 0.00 3.42
2065 3229 7.807907 CACAAGTATTTAAACAAGTTGGGCTAG 59.192 37.037 17.74 0.00 0.00 3.42
2066 3230 7.502895 TCACAAGTATTTAAACAAGTTGGGCTA 59.497 33.333 17.74 3.68 28.96 3.93
2067 3231 6.322712 TCACAAGTATTTAAACAAGTTGGGCT 59.677 34.615 17.74 0.00 28.96 5.19
2068 3232 6.508777 TCACAAGTATTTAAACAAGTTGGGC 58.491 36.000 17.74 0.00 28.96 5.36
2113 3277 1.637724 AACCACGTGGACCTTTGGGA 61.638 55.000 40.21 0.00 38.94 4.37
2127 3381 9.705290 AAATTAACCATGTCATTCTTAAACCAC 57.295 29.630 0.00 0.00 0.00 4.16
2288 3569 6.700960 TGTGAAATGCATTCTACAAAACTTGG 59.299 34.615 20.15 0.00 38.92 3.61
2295 3576 9.809096 TTTAAAGTTGTGAAATGCATTCTACAA 57.191 25.926 25.41 25.41 38.92 2.41
2368 3651 1.602377 GGTCAGTGTGGTTAGTGCAAC 59.398 52.381 0.00 0.00 36.32 4.17
2429 3762 5.444663 ACAGAAAAACAGAATTGAGGAGC 57.555 39.130 0.00 0.00 0.00 4.70
2438 3771 5.537188 ACACAAAGCAACAGAAAAACAGAA 58.463 33.333 0.00 0.00 0.00 3.02
2470 3883 5.812127 GGTGTGCATTTATGAAAAATCTCCC 59.188 40.000 0.00 0.00 0.00 4.30
2504 3917 0.179134 GGTCCTGTCGGTGAGATTCG 60.179 60.000 0.00 0.00 0.00 3.34
2555 4000 6.378280 ACTCCATGGAAAATAACAAGGATGAC 59.622 38.462 17.00 0.00 34.39 3.06
2572 4023 0.179100 CTACAGCCACGACTCCATGG 60.179 60.000 4.97 4.97 39.16 3.66
2579 4030 2.074547 TAAGCAACTACAGCCACGAC 57.925 50.000 0.00 0.00 0.00 4.34
2833 4524 1.160329 AGACGGTTGTTGCTGAGTGC 61.160 55.000 0.00 0.00 43.25 4.40
2844 4542 4.837896 TGCTATAGATCTGAGACGGTTG 57.162 45.455 5.18 0.00 0.00 3.77
2873 4571 2.099921 ACAGAGGTCTAATAGCAGCACG 59.900 50.000 0.00 0.00 0.00 5.34
2891 4589 6.618811 ACTGTAATAACTACTGACGGAACAG 58.381 40.000 0.00 0.00 42.78 3.16
2896 4594 8.475331 AATGAAACTGTAATAACTACTGACGG 57.525 34.615 0.00 0.00 34.44 4.79
2911 4612 5.888161 ACAAAAGGAGACAGAATGAAACTGT 59.112 36.000 0.00 0.00 39.69 3.55
2920 4621 3.632145 GGCTCAAACAAAAGGAGACAGAA 59.368 43.478 0.00 0.00 36.67 3.02
2993 4695 6.294473 CCATCAAAATATCAGCTAGACAGGT 58.706 40.000 0.00 0.00 0.00 4.00
3020 4722 4.340381 GCAATGGTCTAAAGATCAGGCATT 59.660 41.667 12.34 0.00 38.75 3.56
3044 4746 2.749076 TGCGCTGACAGCTTTAATGAAT 59.251 40.909 24.36 0.00 39.60 2.57
3048 4750 2.099141 TCTGCGCTGACAGCTTTAAT 57.901 45.000 24.36 0.00 39.60 1.40
3051 4753 1.242076 AATTCTGCGCTGACAGCTTT 58.758 45.000 24.36 6.38 39.60 3.51
3077 4779 3.013219 GCAGAACATTCCTCCTTCCTTC 58.987 50.000 0.00 0.00 0.00 3.46
3093 4795 4.284829 TGTCCTGTCATAACATGCAGAA 57.715 40.909 0.00 0.00 36.90 3.02
3154 4856 0.737219 GATGGACAGCAAGACATGGC 59.263 55.000 0.00 0.00 0.00 4.40
3155 4857 2.014857 CAGATGGACAGCAAGACATGG 58.985 52.381 0.00 0.00 0.00 3.66
3159 4861 1.446907 CACCAGATGGACAGCAAGAC 58.553 55.000 5.72 0.00 38.94 3.01
3175 4877 1.524621 CCCGATGGATGAGTGCACC 60.525 63.158 14.63 5.76 0.00 5.01
3187 4922 5.515797 TCAGACACTTATAGAACCCGATG 57.484 43.478 0.00 0.00 0.00 3.84
3300 5044 9.788960 GCGCGATATTCCTGATTGATATATATA 57.211 33.333 12.10 0.00 0.00 0.86
3301 5045 8.526978 AGCGCGATATTCCTGATTGATATATAT 58.473 33.333 12.10 0.00 0.00 0.86
3315 5059 5.725110 AAATGATATCAGCGCGATATTCC 57.275 39.130 24.94 17.65 45.58 3.01
3320 5064 4.658713 CTGAAAATGATATCAGCGCGAT 57.341 40.909 12.10 16.61 36.92 4.58
3365 5109 4.640201 GGCTTTTACATGTGCTCATAGGAA 59.360 41.667 9.11 0.00 32.47 3.36
3369 5113 5.105797 CCAAAGGCTTTTACATGTGCTCATA 60.106 40.000 10.36 0.00 32.47 2.15
3375 5119 3.611530 CGACCCAAAGGCTTTTACATGTG 60.612 47.826 10.36 0.00 36.11 3.21
3427 5172 2.040278 AGCTGAGTATGAACCCAAAGCA 59.960 45.455 0.00 0.00 0.00 3.91
3445 5190 2.427506 CAAAAGTAGGCCGAAGAAGCT 58.572 47.619 0.00 0.00 0.00 3.74
3496 5242 1.128513 GCAAAACCGCCTTTTTCTCG 58.871 50.000 0.00 0.00 28.85 4.04
3499 5245 2.217429 TCTGCAAAACCGCCTTTTTC 57.783 45.000 0.00 0.00 28.85 2.29
3503 5249 1.290009 GCATCTGCAAAACCGCCTT 59.710 52.632 0.00 0.00 41.59 4.35
3504 5250 2.639327 GGCATCTGCAAAACCGCCT 61.639 57.895 4.33 0.00 44.36 5.52
3507 5253 1.080569 GGTGGCATCTGCAAAACCG 60.081 57.895 4.33 0.00 44.36 4.44
3508 5254 1.544724 TAGGTGGCATCTGCAAAACC 58.455 50.000 11.36 8.37 44.36 3.27
3509 5255 2.672195 GCTTAGGTGGCATCTGCAAAAC 60.672 50.000 11.36 0.00 44.36 2.43
3511 5257 1.176527 GCTTAGGTGGCATCTGCAAA 58.823 50.000 11.36 0.00 44.36 3.68
3512 5258 0.038021 TGCTTAGGTGGCATCTGCAA 59.962 50.000 11.36 0.00 44.36 4.08
3513 5259 0.038021 TTGCTTAGGTGGCATCTGCA 59.962 50.000 11.36 9.78 44.36 4.41
3536 5286 8.663911 CCATCGTAAAATTAACCATGCAATTTT 58.336 29.630 19.05 19.05 43.32 1.82
3537 5287 7.821846 ACCATCGTAAAATTAACCATGCAATTT 59.178 29.630 0.00 5.53 36.22 1.82
3538 5288 7.327214 ACCATCGTAAAATTAACCATGCAATT 58.673 30.769 0.00 0.00 0.00 2.32
3539 5289 6.872920 ACCATCGTAAAATTAACCATGCAAT 58.127 32.000 0.00 0.00 0.00 3.56
3549 5299 6.128254 TGCAATCGACAACCATCGTAAAATTA 60.128 34.615 0.00 0.00 42.80 1.40
3567 5317 2.418083 GCCCCCTCCTTTGCAATCG 61.418 63.158 0.00 0.00 0.00 3.34
3584 5334 1.353103 CAGAATTGACATCGGCCGC 59.647 57.895 23.51 6.96 0.00 6.53
3592 5342 4.023450 CAGCTCTTTCTTGCAGAATTGACA 60.023 41.667 0.00 0.00 33.67 3.58
3593 5343 4.474113 CAGCTCTTTCTTGCAGAATTGAC 58.526 43.478 0.00 0.00 33.67 3.18
3595 5345 3.504906 TCCAGCTCTTTCTTGCAGAATTG 59.495 43.478 0.00 0.00 33.67 2.32
3596 5346 3.757493 CTCCAGCTCTTTCTTGCAGAATT 59.243 43.478 0.00 0.00 33.67 2.17
3597 5347 3.244840 ACTCCAGCTCTTTCTTGCAGAAT 60.245 43.478 0.00 0.00 33.67 2.40
3598 5348 2.105477 ACTCCAGCTCTTTCTTGCAGAA 59.895 45.455 0.00 0.00 31.28 3.02
3599 5349 1.696336 ACTCCAGCTCTTTCTTGCAGA 59.304 47.619 0.00 0.00 0.00 4.26
3600 5350 2.075338 GACTCCAGCTCTTTCTTGCAG 58.925 52.381 0.00 0.00 0.00 4.41
3601 5351 1.696336 AGACTCCAGCTCTTTCTTGCA 59.304 47.619 0.00 0.00 0.00 4.08
3602 5352 2.075338 CAGACTCCAGCTCTTTCTTGC 58.925 52.381 0.00 0.00 0.00 4.01
3603 5353 2.075338 GCAGACTCCAGCTCTTTCTTG 58.925 52.381 0.00 0.00 0.00 3.02
3604 5354 1.003003 GGCAGACTCCAGCTCTTTCTT 59.997 52.381 0.00 0.00 0.00 2.52
3605 5355 0.612744 GGCAGACTCCAGCTCTTTCT 59.387 55.000 0.00 0.00 0.00 2.52
3606 5356 0.739112 CGGCAGACTCCAGCTCTTTC 60.739 60.000 0.00 0.00 0.00 2.62
3607 5357 1.294780 CGGCAGACTCCAGCTCTTT 59.705 57.895 0.00 0.00 0.00 2.52
3608 5358 1.910772 ACGGCAGACTCCAGCTCTT 60.911 57.895 0.00 0.00 0.00 2.85
3609 5359 2.283532 ACGGCAGACTCCAGCTCT 60.284 61.111 0.00 0.00 0.00 4.09
3619 5369 1.135139 GAGTAGAAGATGCACGGCAGA 59.865 52.381 0.00 0.00 43.65 4.26
3655 5405 4.035102 GTCCTCCCAAAGGCGCCT 62.035 66.667 27.08 27.08 45.78 5.52
3661 5411 1.470098 CGCTTTGATGTCCTCCCAAAG 59.530 52.381 0.00 0.00 45.59 2.77
3697 5447 3.853671 CGCCAATGCTTTATTTCAGTGTC 59.146 43.478 0.00 0.00 34.43 3.67
3719 5469 4.636206 ACTCCAACACTCACTTGAAGTTTC 59.364 41.667 0.00 0.00 0.00 2.78
3729 5479 0.106708 TCTGCCACTCCAACACTCAC 59.893 55.000 0.00 0.00 0.00 3.51
3730 5480 0.394192 CTCTGCCACTCCAACACTCA 59.606 55.000 0.00 0.00 0.00 3.41
3746 5496 3.840666 TGTGAATAAGACCAAGGAGCTCT 59.159 43.478 14.64 0.00 0.00 4.09
3762 5520 6.645790 AACAAGCAAGAGAAATCTGTGAAT 57.354 33.333 0.00 0.00 0.00 2.57
3784 5542 1.885887 CATTCCAAAGCTCCCACGAAA 59.114 47.619 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.