Multiple sequence alignment - TraesCS3B01G178200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G178200 chr3B 100.000 8474 0 0 1 8474 182390142 182381669 0.000000e+00 15649.0
1 TraesCS3B01G178200 chr3B 85.185 81 10 2 347 427 8870717 8870795 1.960000e-11 82.4
2 TraesCS3B01G178200 chr3D 94.633 3093 120 22 1943 5014 128549415 128546348 0.000000e+00 4750.0
3 TraesCS3B01G178200 chr3D 96.871 1694 45 2 5427 7119 128546352 128544666 0.000000e+00 2828.0
4 TraesCS3B01G178200 chr3D 90.465 1657 99 33 1 1640 128551196 128549582 0.000000e+00 2130.0
5 TraesCS3B01G178200 chr3D 94.956 793 24 8 7697 8474 128543834 128543043 0.000000e+00 1229.0
6 TraesCS3B01G178200 chr3D 89.552 469 21 12 7123 7566 128544629 128544164 3.430000e-158 569.0
7 TraesCS3B01G178200 chr3D 88.889 153 7 5 1717 1864 128549729 128549582 6.760000e-41 180.0
8 TraesCS3B01G178200 chr3D 87.903 124 5 3 7582 7695 128544181 128544058 4.130000e-28 137.0
9 TraesCS3B01G178200 chr3A 93.927 2997 125 24 2079 5048 140055504 140052538 0.000000e+00 4473.0
10 TraesCS3B01G178200 chr3A 96.505 1831 45 10 5048 6875 140052504 140050690 0.000000e+00 3009.0
11 TraesCS3B01G178200 chr3A 87.682 1510 86 49 577 2058 140056929 140055492 0.000000e+00 1666.0
12 TraesCS3B01G178200 chr3A 93.325 839 35 9 7641 8474 140043713 140042891 0.000000e+00 1219.0
13 TraesCS3B01G178200 chr3A 88.793 464 29 13 7123 7566 140050473 140050013 1.610000e-151 547.0
14 TraesCS3B01G178200 chr3A 100.000 172 0 0 6948 7119 140050680 140050509 1.370000e-82 318.0
15 TraesCS3B01G178200 chr3A 93.299 194 10 3 1718 1910 140056027 140055836 5.010000e-72 283.0
16 TraesCS3B01G178200 chr2A 88.509 322 28 5 2911 3231 332066167 332066480 1.730000e-101 381.0
17 TraesCS3B01G178200 chr2A 78.902 346 48 12 2521 2847 332044211 332044550 2.400000e-50 211.0
18 TraesCS3B01G178200 chr2A 82.857 70 12 0 5111 5180 30309885 30309816 7.100000e-06 63.9
19 TraesCS3B01G178200 chr2B 91.608 143 11 1 6976 7118 227321819 227321960 6.710000e-46 196.0
20 TraesCS3B01G178200 chr2B 79.054 148 27 3 347 490 153673017 153672870 1.950000e-16 99.0
21 TraesCS3B01G178200 chr6A 76.087 230 39 11 347 564 48101782 48101557 1.160000e-18 106.0
22 TraesCS3B01G178200 chrUn 81.720 93 13 3 364 454 229997333 229997423 3.280000e-09 75.0
23 TraesCS3B01G178200 chrUn 81.720 93 13 3 364 454 245751399 245751489 3.280000e-09 75.0
24 TraesCS3B01G178200 chr6B 85.915 71 8 2 348 418 695162192 695162260 3.280000e-09 75.0
25 TraesCS3B01G178200 chr1B 86.885 61 2 3 172 226 685663274 685663334 7.100000e-06 63.9
26 TraesCS3B01G178200 chr1B 88.000 50 6 0 150 199 364494631 364494582 9.190000e-05 60.2
27 TraesCS3B01G178200 chr1D 97.222 36 1 0 172 207 493498465 493498500 2.550000e-05 62.1
28 TraesCS3B01G178200 chr1D 88.000 50 6 0 150 199 250071832 250071881 9.190000e-05 60.2
29 TraesCS3B01G178200 chr2D 88.462 52 2 3 150 199 54175840 54175889 9.190000e-05 60.2
30 TraesCS3B01G178200 chr5B 100.000 28 0 0 172 199 340615110 340615083 1.500000e-02 52.8
31 TraesCS3B01G178200 chr5B 100.000 28 0 0 172 199 340615247 340615220 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G178200 chr3B 182381669 182390142 8473 True 15649 15649 100.000000 1 8474 1 chr3B.!!$R1 8473
1 TraesCS3B01G178200 chr3D 128543043 128551196 8153 True 1689 4750 91.895571 1 8474 7 chr3D.!!$R1 8473
2 TraesCS3B01G178200 chr3A 140050013 140056929 6916 True 1716 4473 93.367667 577 7566 6 chr3A.!!$R2 6989
3 TraesCS3B01G178200 chr3A 140042891 140043713 822 True 1219 1219 93.325000 7641 8474 1 chr3A.!!$R1 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 847 0.097499 CTGCACACACACACACACAG 59.903 55.000 0.00 0.00 0.00 3.66 F
1802 1848 0.034767 TCAGCCTCATGGAGCTTTGG 60.035 55.000 7.56 0.00 37.18 3.28 F
1874 1920 0.173481 TGGTGACAGAGTCGCTATGC 59.827 55.000 10.14 0.00 42.03 3.14 F
2026 2072 0.179111 AGATTGCGCGCACTAAGCTA 60.179 50.000 36.72 18.70 42.61 3.32 F
2407 2453 0.468214 TCCTCCTGCTGGATCCTACG 60.468 60.000 14.23 2.58 42.29 3.51 F
3336 3387 0.546122 TCACCCAGTGCAGTTCTTGT 59.454 50.000 0.00 0.00 32.98 3.16 F
3879 3936 1.200020 AGCTTTTCCACGTTATGCTGC 59.800 47.619 0.00 0.00 0.00 5.25 F
4323 4393 1.472878 CAGACGTGCTAGTAGCTGGAA 59.527 52.381 22.34 0.00 42.97 3.53 F
4929 5006 2.295349 ACTCTTCAATTGTGCAGCTTGG 59.705 45.455 5.13 0.00 0.00 3.61 F
6147 6261 1.270907 GACACACTGGGATGGTCTCT 58.729 55.000 0.00 0.00 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 1901 0.173481 GCATAGCGACTCTGTCACCA 59.827 55.000 0.00 0.0 32.09 4.17 R
2667 2714 3.191162 GTGATGCAGAACAAATAGTGCCA 59.809 43.478 0.00 0.0 34.91 4.92 R
3868 3925 2.699954 AGCAAGTAAGCAGCATAACGT 58.300 42.857 0.00 0.0 36.85 3.99 R
4012 4069 0.673333 TGCGGTGCATCGACAGAAAT 60.673 50.000 26.37 0.0 31.71 2.17 R
4029 4086 3.367025 GTGTAGGATAACGTGAACACTGC 59.633 47.826 0.00 0.0 35.50 4.40 R
4997 5074 1.070577 CAAACCTTTCGAGCGTCAGTG 60.071 52.381 0.00 0.0 0.00 3.66 R
5430 5543 1.023513 GCAGCAGTCGGAGCAATTCT 61.024 55.000 0.00 0.0 0.00 2.40 R
6014 6128 0.179056 TGGGCGATACTTTAGCAGCC 60.179 55.000 0.00 0.0 43.47 4.85 R
6439 6553 1.765314 AGATCACTGCCACTGTATCCC 59.235 52.381 0.00 0.0 0.00 3.85 R
7854 8267 0.386838 GCAGAGGCAGCACTTGTTTT 59.613 50.000 0.00 0.0 40.72 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 108 3.959293 ACCCAAAATACTACCCTTTCCG 58.041 45.455 0.00 0.00 0.00 4.30
123 125 8.323567 ACCCTTTCCGTTCAAAACTATAAGATA 58.676 33.333 0.00 0.00 0.00 1.98
145 147 8.890718 AGATATCCTAACTTTCTTTTTAACCGC 58.109 33.333 0.00 0.00 0.00 5.68
165 167 7.859325 ACCGCTTGTATATAGATGTGTTTTT 57.141 32.000 5.85 0.00 0.00 1.94
167 169 6.632834 CCGCTTGTATATAGATGTGTTTTTGC 59.367 38.462 5.85 0.00 0.00 3.68
168 170 7.186128 CGCTTGTATATAGATGTGTTTTTGCA 58.814 34.615 0.00 0.00 0.00 4.08
169 171 7.857389 CGCTTGTATATAGATGTGTTTTTGCAT 59.143 33.333 0.00 0.00 0.00 3.96
170 172 9.520204 GCTTGTATATAGATGTGTTTTTGCATT 57.480 29.630 0.00 0.00 0.00 3.56
182 184 6.203530 TGTGTTTTTGCATTTTTGTTCACTCA 59.796 30.769 0.00 0.00 0.00 3.41
187 189 7.606858 TTTGCATTTTTGTTCACTCATTTCA 57.393 28.000 0.00 0.00 0.00 2.69
192 194 7.862372 GCATTTTTGTTCACTCATTTCAGTCTA 59.138 33.333 0.00 0.00 0.00 2.59
234 236 6.090628 CCAAAACATTGTGTAATTCGGAATGG 59.909 38.462 3.59 0.00 0.00 3.16
244 246 4.684484 AATTCGGAATGGAGGTAGTACC 57.316 45.455 11.73 11.73 38.99 3.34
256 258 5.176592 GGAGGTAGTACCACATTGAAGTTC 58.823 45.833 21.49 5.81 41.95 3.01
270 272 2.233922 TGAAGTTCGAGGCCTCCTTTAG 59.766 50.000 27.20 12.65 31.76 1.85
314 316 5.938125 GCCTCCTTTAGTTCACACAATAGAA 59.062 40.000 0.00 0.00 0.00 2.10
345 347 3.987868 GGAACAGGAAAATCGGAAAAAGC 59.012 43.478 0.00 0.00 0.00 3.51
354 356 5.728637 AAATCGGAAAAAGCCTCAATTCT 57.271 34.783 0.00 0.00 0.00 2.40
355 357 5.728637 AATCGGAAAAAGCCTCAATTCTT 57.271 34.783 0.00 0.00 0.00 2.52
367 369 7.077050 AGCCTCAATTCTTATAGAGCAAGAT 57.923 36.000 0.00 0.00 32.27 2.40
385 387 8.349568 AGCAAGATATGTCATTTGATGCATAT 57.650 30.769 0.00 12.98 39.91 1.78
501 503 1.953686 CGAACCAAAGGCTCCAAAGAA 59.046 47.619 0.00 0.00 0.00 2.52
502 504 2.360801 CGAACCAAAGGCTCCAAAGAAA 59.639 45.455 0.00 0.00 0.00 2.52
503 505 3.181480 CGAACCAAAGGCTCCAAAGAAAA 60.181 43.478 0.00 0.00 0.00 2.29
504 506 4.679372 CGAACCAAAGGCTCCAAAGAAAAA 60.679 41.667 0.00 0.00 0.00 1.94
535 539 9.421399 TCTTAAAAATCCCATCCTTTAGAATCC 57.579 33.333 0.00 0.00 0.00 3.01
536 540 8.547481 TTAAAAATCCCATCCTTTAGAATCCC 57.453 34.615 0.00 0.00 0.00 3.85
538 542 7.480222 AAAATCCCATCCTTTAGAATCCCTA 57.520 36.000 0.00 0.00 0.00 3.53
569 574 3.825328 ACAAGTCAAATGAGGCTTGAGT 58.175 40.909 16.25 0.00 40.30 3.41
625 637 1.971357 AGTCCCTGTATCCAATAGCGG 59.029 52.381 0.00 0.00 0.00 5.52
641 653 1.008881 CGGCATGCTGCATGTCATC 60.009 57.895 37.00 23.31 45.55 2.92
796 808 1.497722 GCTACGCAGCCAAGAACAC 59.502 57.895 0.00 0.00 42.37 3.32
831 843 2.023181 CGCTGCACACACACACAC 59.977 61.111 0.00 0.00 0.00 3.82
832 844 2.748843 CGCTGCACACACACACACA 61.749 57.895 0.00 0.00 0.00 3.72
833 845 1.226379 GCTGCACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
834 846 1.921045 GCTGCACACACACACACACA 61.921 55.000 0.00 0.00 0.00 3.72
835 847 0.097499 CTGCACACACACACACACAG 59.903 55.000 0.00 0.00 0.00 3.66
848 877 3.037833 CACAGCGCAACGAGCAGA 61.038 61.111 11.47 0.00 46.13 4.26
849 878 2.736236 ACAGCGCAACGAGCAGAG 60.736 61.111 11.47 0.00 46.13 3.35
850 879 2.431430 CAGCGCAACGAGCAGAGA 60.431 61.111 11.47 0.00 46.13 3.10
851 880 2.126149 AGCGCAACGAGCAGAGAG 60.126 61.111 11.47 0.00 46.13 3.20
852 881 2.126307 GCGCAACGAGCAGAGAGA 60.126 61.111 0.30 0.00 46.13 3.10
853 882 1.518133 GCGCAACGAGCAGAGAGAT 60.518 57.895 0.30 0.00 46.13 2.75
908 937 2.341543 CTCCCATCCATCTCGCCG 59.658 66.667 0.00 0.00 0.00 6.46
909 938 3.231889 CTCCCATCCATCTCGCCGG 62.232 68.421 0.00 0.00 0.00 6.13
927 956 3.750371 CCGGAACCATCCATTATTAGCA 58.250 45.455 0.00 0.00 46.97 3.49
931 960 5.049405 CGGAACCATCCATTATTAGCAAGAC 60.049 44.000 0.00 0.00 46.97 3.01
932 961 5.241728 GGAACCATCCATTATTAGCAAGACC 59.758 44.000 0.00 0.00 45.79 3.85
933 962 5.387113 ACCATCCATTATTAGCAAGACCA 57.613 39.130 0.00 0.00 0.00 4.02
934 963 5.380043 ACCATCCATTATTAGCAAGACCAG 58.620 41.667 0.00 0.00 0.00 4.00
935 964 5.132648 ACCATCCATTATTAGCAAGACCAGA 59.867 40.000 0.00 0.00 0.00 3.86
936 965 6.183361 ACCATCCATTATTAGCAAGACCAGAT 60.183 38.462 0.00 0.00 0.00 2.90
937 966 6.150641 CCATCCATTATTAGCAAGACCAGATG 59.849 42.308 0.00 0.00 0.00 2.90
938 967 5.065914 TCCATTATTAGCAAGACCAGATGC 58.934 41.667 0.00 0.00 42.87 3.91
952 981 1.154282 GATGCTGTCGTCGTCGTCA 60.154 57.895 1.33 1.79 38.33 4.35
977 1006 1.038130 CGTCCCCCGTTGATCTCTCT 61.038 60.000 0.00 0.00 0.00 3.10
978 1007 0.747852 GTCCCCCGTTGATCTCTCTC 59.252 60.000 0.00 0.00 0.00 3.20
979 1008 0.397254 TCCCCCGTTGATCTCTCTCC 60.397 60.000 0.00 0.00 0.00 3.71
980 1009 1.736586 CCCCGTTGATCTCTCTCCG 59.263 63.158 0.00 0.00 0.00 4.63
981 1010 1.066587 CCCGTTGATCTCTCTCCGC 59.933 63.158 0.00 0.00 0.00 5.54
982 1011 1.066587 CCGTTGATCTCTCTCCGCC 59.933 63.158 0.00 0.00 0.00 6.13
987 1016 0.179004 TGATCTCTCTCCGCCCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
996 1025 2.359169 CCGCCCTCTCTTAGCCACA 61.359 63.158 0.00 0.00 0.00 4.17
1000 1029 1.561643 CCCTCTCTTAGCCACACTCA 58.438 55.000 0.00 0.00 0.00 3.41
1001 1030 1.205893 CCCTCTCTTAGCCACACTCAC 59.794 57.143 0.00 0.00 0.00 3.51
1003 1032 1.813178 CTCTCTTAGCCACACTCACGA 59.187 52.381 0.00 0.00 0.00 4.35
1045 1085 1.811679 GAGCTAGCTCCACGTTGGC 60.812 63.158 30.89 6.00 37.47 4.52
1290 1334 1.443872 CACCTTCGACGAGTTCCCG 60.444 63.158 0.00 0.00 0.00 5.14
1309 1353 2.478539 CCGTACTACCTCAGGTAAACGC 60.479 54.545 24.04 8.09 41.82 4.84
1310 1354 2.478539 CGTACTACCTCAGGTAAACGCC 60.479 54.545 20.08 1.83 39.20 5.68
1341 1385 2.154963 TCGCAAAAACGTTCATCTCTCG 59.845 45.455 0.00 0.00 0.00 4.04
1364 1408 1.403679 GATGTGAGTGAGACTCTCGGG 59.596 57.143 3.68 0.00 45.27 5.14
1365 1409 0.609406 TGTGAGTGAGACTCTCGGGG 60.609 60.000 3.68 0.00 45.27 5.73
1451 1496 4.824289 CTGATCTTTTGGTGGGGAAAATG 58.176 43.478 0.00 0.00 0.00 2.32
1452 1497 4.487804 TGATCTTTTGGTGGGGAAAATGA 58.512 39.130 0.00 0.00 0.00 2.57
1453 1498 4.904251 TGATCTTTTGGTGGGGAAAATGAA 59.096 37.500 0.00 0.00 0.00 2.57
1454 1499 5.367937 TGATCTTTTGGTGGGGAAAATGAAA 59.632 36.000 0.00 0.00 0.00 2.69
1476 1521 4.690184 TCATTTCTGTGTGATGTGCATC 57.310 40.909 5.30 5.30 38.29 3.91
1532 1577 7.015098 TGCATGTAAAGGAAGAAGAAAAATCCA 59.985 33.333 0.00 0.00 34.30 3.41
1546 1591 7.264373 AGAAAAATCCAGAGTTTGTGTGTAG 57.736 36.000 0.00 0.00 0.00 2.74
1548 1593 6.619801 AAAATCCAGAGTTTGTGTGTAGTC 57.380 37.500 0.00 0.00 0.00 2.59
1550 1595 6.665992 AATCCAGAGTTTGTGTGTAGTCTA 57.334 37.500 0.00 0.00 0.00 2.59
1551 1596 6.665992 ATCCAGAGTTTGTGTGTAGTCTAA 57.334 37.500 0.00 0.00 0.00 2.10
1552 1597 6.665992 TCCAGAGTTTGTGTGTAGTCTAAT 57.334 37.500 0.00 0.00 0.00 1.73
1553 1598 7.062749 TCCAGAGTTTGTGTGTAGTCTAATT 57.937 36.000 0.00 0.00 0.00 1.40
1554 1599 7.506114 TCCAGAGTTTGTGTGTAGTCTAATTT 58.494 34.615 0.00 0.00 0.00 1.82
1555 1600 7.990886 TCCAGAGTTTGTGTGTAGTCTAATTTT 59.009 33.333 0.00 0.00 0.00 1.82
1556 1601 8.283291 CCAGAGTTTGTGTGTAGTCTAATTTTC 58.717 37.037 0.00 0.00 0.00 2.29
1557 1602 8.283291 CAGAGTTTGTGTGTAGTCTAATTTTCC 58.717 37.037 0.00 0.00 0.00 3.13
1626 1672 5.726980 TTTCCTTTCTGAAATGTCCATGG 57.273 39.130 4.97 4.97 29.56 3.66
1697 1743 5.104259 GAGAATCCCAGTTGGTGAATAGT 57.896 43.478 0.00 0.00 34.77 2.12
1698 1744 5.501156 GAGAATCCCAGTTGGTGAATAGTT 58.499 41.667 0.00 0.00 34.77 2.24
1699 1745 5.256474 AGAATCCCAGTTGGTGAATAGTTG 58.744 41.667 0.00 0.00 34.77 3.16
1760 1806 8.994429 TTTGCATGTAAAAGAAGAAGTGAAAA 57.006 26.923 6.49 0.00 0.00 2.29
1761 1807 8.994429 TTGCATGTAAAAGAAGAAGTGAAAAA 57.006 26.923 0.00 0.00 0.00 1.94
1762 1808 9.598517 TTGCATGTAAAAGAAGAAGTGAAAAAT 57.401 25.926 0.00 0.00 0.00 1.82
1763 1809 9.248291 TGCATGTAAAAGAAGAAGTGAAAAATC 57.752 29.630 0.00 0.00 0.00 2.17
1764 1810 8.703336 GCATGTAAAAGAAGAAGTGAAAAATCC 58.297 33.333 0.00 0.00 0.00 3.01
1765 1811 9.748708 CATGTAAAAGAAGAAGTGAAAAATCCA 57.251 29.630 0.00 0.00 0.00 3.41
1785 1831 9.883142 AAATCCAGAGTTTTTGTGTAATTTTCA 57.117 25.926 0.00 0.00 0.00 2.69
1790 1836 7.168135 CAGAGTTTTTGTGTAATTTTCAGCCTC 59.832 37.037 0.00 0.00 0.00 4.70
1802 1848 0.034767 TCAGCCTCATGGAGCTTTGG 60.035 55.000 7.56 0.00 37.18 3.28
1806 1852 1.928868 CCTCATGGAGCTTTGGGTTT 58.071 50.000 0.00 0.00 34.57 3.27
1855 1901 6.070656 TCCTTTCTGAAATGTCCATGAAAGT 58.929 36.000 15.69 0.00 38.87 2.66
1856 1902 6.016024 TCCTTTCTGAAATGTCCATGAAAGTG 60.016 38.462 15.69 10.58 38.87 3.16
1858 1904 4.728772 TCTGAAATGTCCATGAAAGTGGT 58.271 39.130 0.00 0.00 40.27 4.16
1859 1905 4.520111 TCTGAAATGTCCATGAAAGTGGTG 59.480 41.667 0.00 0.00 40.27 4.17
1860 1906 4.468713 TGAAATGTCCATGAAAGTGGTGA 58.531 39.130 0.00 0.00 40.27 4.02
1861 1907 4.278170 TGAAATGTCCATGAAAGTGGTGAC 59.722 41.667 0.00 0.00 40.27 3.67
1862 1908 3.507162 ATGTCCATGAAAGTGGTGACA 57.493 42.857 0.00 0.00 40.27 3.58
1863 1909 2.849942 TGTCCATGAAAGTGGTGACAG 58.150 47.619 0.00 0.00 44.46 3.51
1864 1910 2.437651 TGTCCATGAAAGTGGTGACAGA 59.562 45.455 0.00 0.00 44.46 3.41
1865 1911 3.070018 GTCCATGAAAGTGGTGACAGAG 58.930 50.000 0.00 0.00 44.46 3.35
1866 1912 2.705658 TCCATGAAAGTGGTGACAGAGT 59.294 45.455 0.00 0.00 44.46 3.24
1867 1913 3.070018 CCATGAAAGTGGTGACAGAGTC 58.930 50.000 0.00 0.00 44.46 3.36
1868 1914 2.509052 TGAAAGTGGTGACAGAGTCG 57.491 50.000 0.00 0.00 44.46 4.18
1869 1915 1.140816 GAAAGTGGTGACAGAGTCGC 58.859 55.000 2.25 2.25 44.46 5.19
1870 1916 0.753262 AAAGTGGTGACAGAGTCGCT 59.247 50.000 10.14 0.00 44.46 4.93
1871 1917 1.617322 AAGTGGTGACAGAGTCGCTA 58.383 50.000 10.14 1.92 44.46 4.26
1872 1918 1.840737 AGTGGTGACAGAGTCGCTAT 58.159 50.000 10.14 0.00 44.46 2.97
1873 1919 1.474478 AGTGGTGACAGAGTCGCTATG 59.526 52.381 10.14 0.87 44.46 2.23
1874 1920 0.173481 TGGTGACAGAGTCGCTATGC 59.827 55.000 10.14 0.00 42.03 3.14
1875 1921 0.457851 GGTGACAGAGTCGCTATGCT 59.542 55.000 10.14 0.00 42.03 3.79
1876 1922 1.554392 GTGACAGAGTCGCTATGCTG 58.446 55.000 3.62 0.00 39.62 4.41
1877 1923 1.135257 GTGACAGAGTCGCTATGCTGT 60.135 52.381 0.00 0.00 43.67 4.40
1878 1924 1.833860 GACAGAGTCGCTATGCTGTC 58.166 55.000 0.00 0.00 46.91 3.51
1879 1925 1.177401 ACAGAGTCGCTATGCTGTCA 58.823 50.000 0.00 0.00 36.98 3.58
1880 1926 1.133982 ACAGAGTCGCTATGCTGTCAG 59.866 52.381 0.00 0.00 36.98 3.51
1881 1927 1.403323 CAGAGTCGCTATGCTGTCAGA 59.597 52.381 3.32 0.00 0.00 3.27
1890 1936 3.739519 GCTATGCTGTCAGAACTCGGATT 60.740 47.826 3.32 0.00 0.00 3.01
1926 1972 2.586425 CCAGAGGGTTCAAAAGCTCAA 58.414 47.619 0.00 0.00 0.00 3.02
1979 2025 2.793933 CAAAATCTGCTTGGATCAGCG 58.206 47.619 0.00 0.00 43.37 5.18
1998 2044 2.621338 CGAACCATGCATGACACTAGT 58.379 47.619 28.31 12.93 0.00 2.57
2000 2046 3.436704 CGAACCATGCATGACACTAGTTT 59.563 43.478 28.31 7.26 0.00 2.66
2012 2058 8.759641 GCATGACACTAGTTTACTGATAGATTG 58.240 37.037 0.00 0.00 0.00 2.67
2018 2064 2.217429 TTACTGATAGATTGCGCGCA 57.783 45.000 33.09 33.09 0.00 6.09
2026 2072 0.179111 AGATTGCGCGCACTAAGCTA 60.179 50.000 36.72 18.70 42.61 3.32
2034 2080 2.348666 CGCGCACTAAGCTATGTTTTCT 59.651 45.455 8.75 0.00 42.61 2.52
2035 2081 3.550275 CGCGCACTAAGCTATGTTTTCTA 59.450 43.478 8.75 0.00 42.61 2.10
2078 2124 1.841919 TCATGCAGTCCTCATCCATGT 59.158 47.619 0.00 0.00 35.85 3.21
2257 2303 6.516527 GCAGGTAAAAACCATCTTCATCACAA 60.517 38.462 0.00 0.00 0.00 3.33
2407 2453 0.468214 TCCTCCTGCTGGATCCTACG 60.468 60.000 14.23 2.58 42.29 3.51
2425 2471 7.664552 TCCTACGGATTTTCTCATAAAGGTA 57.335 36.000 0.00 0.00 0.00 3.08
2431 2477 9.074576 ACGGATTTTCTCATAAAGGTAAGTTTT 57.925 29.630 0.00 0.00 0.00 2.43
2432 2478 9.341899 CGGATTTTCTCATAAAGGTAAGTTTTG 57.658 33.333 0.00 0.00 0.00 2.44
2434 2480 9.914131 GATTTTCTCATAAAGGTAAGTTTTGCT 57.086 29.630 0.00 0.00 0.00 3.91
2451 2497 1.020437 GCTGGAGCATTAGTCCTTGC 58.980 55.000 0.00 0.00 41.59 4.01
2453 2499 0.613260 TGGAGCATTAGTCCTTGCGT 59.387 50.000 0.00 0.00 43.61 5.24
2454 2500 1.003118 TGGAGCATTAGTCCTTGCGTT 59.997 47.619 0.00 0.00 43.61 4.84
2455 2501 2.235155 TGGAGCATTAGTCCTTGCGTTA 59.765 45.455 0.00 0.00 43.61 3.18
2456 2502 2.608090 GGAGCATTAGTCCTTGCGTTAC 59.392 50.000 0.00 0.00 43.61 2.50
2457 2503 3.259064 GAGCATTAGTCCTTGCGTTACA 58.741 45.455 0.00 0.00 43.61 2.41
2459 2505 2.222729 GCATTAGTCCTTGCGTTACACG 60.223 50.000 0.00 0.00 45.88 4.49
2460 2506 2.798976 TTAGTCCTTGCGTTACACGT 57.201 45.000 0.00 0.00 44.73 4.49
2461 2507 2.336554 TAGTCCTTGCGTTACACGTC 57.663 50.000 0.00 0.00 44.73 4.34
2472 2518 3.870007 CGTTACACGTCGCTAGATATGT 58.130 45.455 0.00 0.00 36.74 2.29
2473 2519 4.277258 CGTTACACGTCGCTAGATATGTT 58.723 43.478 0.00 0.00 36.74 2.71
2474 2520 4.731961 CGTTACACGTCGCTAGATATGTTT 59.268 41.667 0.00 0.00 36.74 2.83
2475 2521 5.228635 CGTTACACGTCGCTAGATATGTTTT 59.771 40.000 0.00 0.00 36.74 2.43
2476 2522 6.411782 CGTTACACGTCGCTAGATATGTTTTA 59.588 38.462 0.00 0.00 36.74 1.52
2523 2569 1.462616 TGCAGCTTCACGGCAAATAT 58.537 45.000 0.00 0.00 46.96 1.28
2568 2614 1.486726 AGACCTTAGCATACCACTGGC 59.513 52.381 0.00 0.00 0.00 4.85
2644 2691 1.317613 TTCTGAATGTTTGGTGCGCT 58.682 45.000 9.73 0.00 0.00 5.92
2673 2720 7.093814 TGAGCTTATTTTTGATACATTGGCACT 60.094 33.333 0.00 0.00 0.00 4.40
2689 2736 3.191162 TGGCACTATTTGTTCTGCATCAC 59.809 43.478 0.00 0.00 0.00 3.06
2815 2862 2.484651 TCTCCGAGACGACTCTTGAAAG 59.515 50.000 12.88 3.66 40.65 2.62
2876 2923 0.908198 AGGAGCAATCCAGAGGTGAC 59.092 55.000 0.00 0.00 0.00 3.67
2918 2965 3.844577 TCGTTCTTCTGTAGTGGTAGC 57.155 47.619 0.00 0.00 0.00 3.58
3146 3194 7.936496 TGCCTTTTTCTCATATATTGACACA 57.064 32.000 0.00 0.00 0.00 3.72
3147 3195 8.347004 TGCCTTTTTCTCATATATTGACACAA 57.653 30.769 0.00 0.00 0.00 3.33
3215 3264 7.653647 AGTACTCAAACAACAGAGTTCTAGAG 58.346 38.462 0.02 0.00 42.12 2.43
3333 3384 1.131638 TTCTCACCCAGTGCAGTTCT 58.868 50.000 0.00 0.00 32.98 3.01
3336 3387 0.546122 TCACCCAGTGCAGTTCTTGT 59.454 50.000 0.00 0.00 32.98 3.16
3348 3399 5.570589 GTGCAGTTCTTGTGAATAAAGCATC 59.429 40.000 0.00 0.00 33.55 3.91
3354 3405 5.185454 TCTTGTGAATAAAGCATCGACCAT 58.815 37.500 0.00 0.00 0.00 3.55
3425 3476 6.925718 TGAAGGAATATCAATACTCGCTCTTG 59.074 38.462 0.00 0.00 0.00 3.02
3492 3543 7.402054 TGATTCCCATTGTGTGTATCTACTTT 58.598 34.615 0.00 0.00 0.00 2.66
3550 3601 6.905736 TCCATTTTATGTTGCAGGAGGTATA 58.094 36.000 0.00 0.00 0.00 1.47
3597 3648 7.860373 CGACATGAAATTAAGGTGTGAGAAAAA 59.140 33.333 0.00 0.00 0.00 1.94
3685 3742 1.993956 AGTACAAACAGCATGCCCAA 58.006 45.000 15.66 0.00 42.53 4.12
3752 3809 1.502190 GCAAGGCGCTCCAAGTAAC 59.498 57.895 7.64 0.00 37.77 2.50
3763 3820 4.434520 GCTCCAAGTAACTCAGGTCATAC 58.565 47.826 0.00 0.00 0.00 2.39
3787 3844 5.350633 CATGTCCTTTTGAAAGACTTGCAA 58.649 37.500 4.34 4.34 38.28 4.08
3812 3869 5.221342 TGGCACAAAATAAATTTCGTCACCT 60.221 36.000 0.00 0.00 31.92 4.00
3868 3925 5.843673 TTGTGTGTATTTGAGCTTTTCCA 57.156 34.783 0.00 0.00 0.00 3.53
3870 3927 4.219033 GTGTGTATTTGAGCTTTTCCACG 58.781 43.478 0.00 0.00 0.00 4.94
3879 3936 1.200020 AGCTTTTCCACGTTATGCTGC 59.800 47.619 0.00 0.00 0.00 5.25
3941 3998 2.103432 TCCGACTTGCAAGGTAGTGAAA 59.897 45.455 29.18 4.69 0.00 2.69
3942 3999 2.223377 CCGACTTGCAAGGTAGTGAAAC 59.777 50.000 29.18 8.56 0.00 2.78
3958 4015 6.882610 AGTGAAACAGATCTAAATGCAACA 57.117 33.333 0.00 0.00 41.43 3.33
3962 4019 9.624697 GTGAAACAGATCTAAATGCAACAATTA 57.375 29.630 0.00 0.00 36.32 1.40
3967 4024 9.182214 ACAGATCTAAATGCAACAATTATCACT 57.818 29.630 0.00 0.00 0.00 3.41
3976 4033 8.978874 ATGCAACAATTATCACTATGGAAGTA 57.021 30.769 0.00 0.00 35.76 2.24
3986 4043 6.494893 TCACTATGGAAGTAATGCACAAAC 57.505 37.500 0.00 0.00 35.76 2.93
4012 4069 7.326789 CCGACGAGAAGTAGTTTGTTTATGTTA 59.673 37.037 0.00 0.00 0.00 2.41
4025 4082 8.575454 GTTTGTTTATGTTATTTCTGTCGATGC 58.425 33.333 0.00 0.00 0.00 3.91
4029 4086 2.670905 TGTTATTTCTGTCGATGCACCG 59.329 45.455 0.00 0.00 0.00 4.94
4055 4112 4.986659 GTGTTCACGTTATCCTACACACTT 59.013 41.667 0.00 0.00 36.71 3.16
4109 4166 2.421424 GCTTGCATGTCTAGTTCCCTTG 59.579 50.000 1.14 0.00 0.00 3.61
4117 4178 5.578005 TGTCTAGTTCCCTTGAGATAACG 57.422 43.478 0.00 0.00 0.00 3.18
4144 4205 4.401022 TCTCATGCACAAAGTTGGAATCT 58.599 39.130 0.00 0.00 0.00 2.40
4150 4211 6.403866 TGCACAAAGTTGGAATCTAAATGT 57.596 33.333 0.00 0.00 0.00 2.71
4323 4393 1.472878 CAGACGTGCTAGTAGCTGGAA 59.527 52.381 22.34 0.00 42.97 3.53
4612 4682 3.922240 CCGAAAATGAGAATTGCCTTGTG 59.078 43.478 0.00 0.00 0.00 3.33
4929 5006 2.295349 ACTCTTCAATTGTGCAGCTTGG 59.705 45.455 5.13 0.00 0.00 3.61
4997 5074 3.632145 ACACCATGAAGTTGGAAAGACAC 59.368 43.478 0.00 0.00 39.25 3.67
5051 5162 3.314080 TGTTTTTGCACTTCTAGGTTCCG 59.686 43.478 0.00 0.00 0.00 4.30
5062 5173 7.201705 GCACTTCTAGGTTCCGCTATTTAATTT 60.202 37.037 0.00 0.00 0.00 1.82
5063 5174 9.321562 CACTTCTAGGTTCCGCTATTTAATTTA 57.678 33.333 0.00 0.00 0.00 1.40
5075 5186 8.294577 CCGCTATTTAATTTATTTGTACTCCCC 58.705 37.037 0.00 0.00 0.00 4.81
5154 5265 7.857404 TTGACCAAGTTTATATGGGGAAAAA 57.143 32.000 0.00 0.00 41.17 1.94
5287 5400 7.892778 TCTACATGCGTTGTATTTTAGAACA 57.107 32.000 0.00 0.00 40.02 3.18
5322 5435 7.231925 ACCTATTTATTGTTTTTCCAACGAGGT 59.768 33.333 0.00 0.00 39.02 3.85
5356 5469 7.262990 TCTAGCATAGGCATCCAATTCTATT 57.737 36.000 0.67 0.00 44.61 1.73
5357 5470 8.379428 TCTAGCATAGGCATCCAATTCTATTA 57.621 34.615 0.67 0.00 44.61 0.98
5358 5471 8.481314 TCTAGCATAGGCATCCAATTCTATTAG 58.519 37.037 0.67 0.00 44.61 1.73
5361 5474 8.166061 AGCATAGGCATCCAATTCTATTAGAAA 58.834 33.333 10.07 0.00 44.61 2.52
5362 5475 8.457261 GCATAGGCATCCAATTCTATTAGAAAG 58.543 37.037 10.07 6.31 37.63 2.62
5363 5476 9.512588 CATAGGCATCCAATTCTATTAGAAAGT 57.487 33.333 10.07 0.00 37.82 2.66
5365 5478 8.829373 AGGCATCCAATTCTATTAGAAAGTTT 57.171 30.769 10.07 0.00 37.82 2.66
5366 5479 9.920946 AGGCATCCAATTCTATTAGAAAGTTTA 57.079 29.630 10.07 0.00 37.82 2.01
5421 5534 6.653020 TGACATGCCTCAACTACATAGATTT 58.347 36.000 0.00 0.00 0.00 2.17
5430 5543 9.658799 CCTCAACTACATAGATTTCTGAAAAGA 57.341 33.333 6.95 0.00 0.00 2.52
6014 6128 5.679734 ATGTTAGAGCACTGTTCACTTTG 57.320 39.130 0.00 0.00 0.00 2.77
6147 6261 1.270907 GACACACTGGGATGGTCTCT 58.729 55.000 0.00 0.00 0.00 3.10
6275 6389 5.104693 TCCTTGAAATCAATCCCTAGCGTTA 60.105 40.000 0.00 0.00 35.02 3.18
6404 6518 5.364778 TGTCGAAGGAGAAAGTTGATGAAA 58.635 37.500 0.00 0.00 0.00 2.69
6439 6553 3.055530 AGGAACTAGCAACCATGACTGAG 60.056 47.826 0.00 0.00 36.02 3.35
6507 6621 8.405531 TGAATCTTTCTCCACTTAAAACACTTG 58.594 33.333 0.00 0.00 0.00 3.16
6707 6821 5.182760 CCAGGAGAAGATGAAACTGGAAAAG 59.817 44.000 0.00 0.00 46.38 2.27
6869 6983 2.027285 TGCAAGCATGTAGTAGAAGCCA 60.027 45.455 0.00 0.00 0.00 4.75
6875 6989 7.469181 GCAAGCATGTAGTAGAAGCCATTAATT 60.469 37.037 0.00 0.00 0.00 1.40
6876 6990 9.056005 CAAGCATGTAGTAGAAGCCATTAATTA 57.944 33.333 0.00 0.00 0.00 1.40
6877 6991 9.627123 AAGCATGTAGTAGAAGCCATTAATTAA 57.373 29.630 0.00 0.00 0.00 1.40
6878 6992 9.799106 AGCATGTAGTAGAAGCCATTAATTAAT 57.201 29.630 4.81 4.81 0.00 1.40
6935 7049 5.968254 TGGACACATTAGAACGTGCTAATA 58.032 37.500 25.21 8.95 38.63 0.98
6939 7053 7.096023 GGACACATTAGAACGTGCTAATATCTG 60.096 40.741 25.21 21.04 38.63 2.90
6940 7054 6.701841 ACACATTAGAACGTGCTAATATCTGG 59.298 38.462 25.21 16.16 38.63 3.86
7119 7233 5.463724 GGAAAGTAGAATAGATGGCGAACAG 59.536 44.000 0.00 0.00 0.00 3.16
7182 7330 2.557317 CCTGTGTTCGGTTGTTGTACT 58.443 47.619 0.00 0.00 0.00 2.73
7223 7371 2.105766 GCAGGGCAGATCCTTTTGATT 58.894 47.619 0.00 0.00 34.31 2.57
7266 7414 1.998315 CTCCTTTGTGTGCATCTCTCG 59.002 52.381 0.00 0.00 0.00 4.04
7270 7418 2.299993 TTGTGTGCATCTCTCGATCC 57.700 50.000 0.00 0.00 0.00 3.36
7271 7419 0.461548 TGTGTGCATCTCTCGATCCC 59.538 55.000 0.00 0.00 0.00 3.85
7298 7446 7.439356 CCATGTCTTGTGTATAGGTAGTTCATG 59.561 40.741 0.00 0.00 0.00 3.07
7301 7449 6.477033 GTCTTGTGTATAGGTAGTTCATGCTG 59.523 42.308 0.00 0.00 0.00 4.41
7315 7463 1.470098 CATGCTGCTTGGTAGGTTGTC 59.530 52.381 7.58 0.00 0.00 3.18
7351 7500 0.108662 TATCAGCGTGCCAGTCTGTG 60.109 55.000 0.00 0.00 0.00 3.66
7352 7501 2.104572 ATCAGCGTGCCAGTCTGTGT 62.105 55.000 0.00 0.00 0.00 3.72
7366 7518 5.046529 CAGTCTGTGTATCAGTATGCTTCC 58.953 45.833 0.00 0.00 43.97 3.46
7462 7616 8.991243 TTTCATAGTGTACTGTAAATAAGCGT 57.009 30.769 0.00 0.00 0.00 5.07
7463 7617 7.980742 TCATAGTGTACTGTAAATAAGCGTG 57.019 36.000 0.00 0.00 0.00 5.34
7464 7618 7.541162 TCATAGTGTACTGTAAATAAGCGTGT 58.459 34.615 0.00 0.00 0.00 4.49
7465 7619 8.676401 TCATAGTGTACTGTAAATAAGCGTGTA 58.324 33.333 0.00 0.00 0.00 2.90
7510 7680 1.364626 GCGGTCTCATGCCTGAAGTG 61.365 60.000 0.00 0.00 0.00 3.16
7526 7701 5.239306 CCTGAAGTGCACTACAATTTGAGAA 59.761 40.000 22.01 0.00 36.53 2.87
7562 7737 5.183904 GTCGGTAAGTTTCCACTCCTACTTA 59.816 44.000 0.00 0.00 33.28 2.24
7563 7738 5.954150 TCGGTAAGTTTCCACTCCTACTTAT 59.046 40.000 0.00 0.00 36.02 1.73
7564 7739 6.040878 CGGTAAGTTTCCACTCCTACTTATG 58.959 44.000 0.00 0.00 36.02 1.90
7565 7740 6.350780 CGGTAAGTTTCCACTCCTACTTATGT 60.351 42.308 0.00 0.00 36.02 2.29
7566 7741 7.392418 GGTAAGTTTCCACTCCTACTTATGTT 58.608 38.462 0.00 0.00 36.02 2.71
7567 7742 7.881751 GGTAAGTTTCCACTCCTACTTATGTTT 59.118 37.037 0.00 0.00 36.02 2.83
7568 7743 9.281371 GTAAGTTTCCACTCCTACTTATGTTTT 57.719 33.333 0.00 0.00 36.02 2.43
7569 7744 8.762481 AAGTTTCCACTCCTACTTATGTTTTT 57.238 30.769 0.00 0.00 30.45 1.94
7588 7763 4.457834 TTTTCTCGAGAATCTCCACTCC 57.542 45.455 27.51 0.00 33.54 3.85
7589 7764 3.374042 TTCTCGAGAATCTCCACTCCT 57.626 47.619 23.74 0.00 0.00 3.69
7590 7765 4.505324 TTCTCGAGAATCTCCACTCCTA 57.495 45.455 23.74 0.00 0.00 2.94
7591 7766 3.811083 TCTCGAGAATCTCCACTCCTAC 58.189 50.000 14.01 0.00 0.00 3.18
7592 7767 3.456644 TCTCGAGAATCTCCACTCCTACT 59.543 47.826 14.01 0.00 0.00 2.57
7593 7768 4.080243 TCTCGAGAATCTCCACTCCTACTT 60.080 45.833 14.01 0.00 0.00 2.24
7615 7790 2.325484 TGTGGTAGAGAAACTCCAGCA 58.675 47.619 0.00 0.00 28.47 4.41
7619 7794 4.154918 GTGGTAGAGAAACTCCAGCAATTG 59.845 45.833 0.00 0.00 32.35 2.32
7651 7835 1.835483 GCACTCTGAACACACGCAGG 61.835 60.000 0.00 0.00 33.05 4.85
7798 8211 2.729156 GCAAGTAGCAAAATCAGCGTCC 60.729 50.000 0.00 0.00 44.79 4.79
7854 8267 1.890876 AATCAAACAGCGGTACAGCA 58.109 45.000 20.22 0.00 40.15 4.41
7927 8341 4.067896 ACTCTCATCAAAGTCGCAAACAT 58.932 39.130 0.00 0.00 0.00 2.71
7958 8374 4.760204 AGCCTTACATAACACAAGACAACC 59.240 41.667 0.00 0.00 0.00 3.77
8019 8435 1.064463 ACCAGTCGCCATCATTCCATT 60.064 47.619 0.00 0.00 0.00 3.16
8253 8677 6.508030 TCCACTGTTAGCCAAATCCATATA 57.492 37.500 0.00 0.00 0.00 0.86
8261 8685 5.511386 AGCCAAATCCATATAGGGAAGAG 57.489 43.478 10.70 3.04 41.12 2.85
8262 8686 4.916424 AGCCAAATCCATATAGGGAAGAGT 59.084 41.667 10.70 0.00 41.12 3.24
8267 8694 4.963318 TCCATATAGGGAAGAGTTGCTG 57.037 45.455 2.99 0.00 38.24 4.41
8280 8707 6.374333 GGAAGAGTTGCTGAAAATGGTATACA 59.626 38.462 5.01 0.00 0.00 2.29
8281 8708 7.094377 GGAAGAGTTGCTGAAAATGGTATACAA 60.094 37.037 5.01 0.00 0.00 2.41
8409 8836 5.904362 AGTTAAATGAGGCAAATCCAGAC 57.096 39.130 0.00 0.00 37.29 3.51
8417 8844 4.019411 TGAGGCAAATCCAGACTGATGTAA 60.019 41.667 3.32 0.00 37.29 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 6.452494 TTTTGGGTTGAACTTTGATCGTAA 57.548 33.333 0.00 0.00 0.00 3.18
123 125 7.013942 ACAAGCGGTTAAAAAGAAAGTTAGGAT 59.986 33.333 0.00 0.00 0.00 3.24
165 167 6.339730 ACTGAAATGAGTGAACAAAAATGCA 58.660 32.000 0.00 0.00 0.00 3.96
167 169 9.903682 ATAGACTGAAATGAGTGAACAAAAATG 57.096 29.630 0.00 0.00 0.00 2.32
171 173 9.725019 ACATATAGACTGAAATGAGTGAACAAA 57.275 29.630 0.00 0.00 0.00 2.83
215 217 4.640201 ACCTCCATTCCGAATTACACAATG 59.360 41.667 0.00 0.00 0.00 2.82
218 220 3.992943 ACCTCCATTCCGAATTACACA 57.007 42.857 0.00 0.00 0.00 3.72
219 221 5.019785 ACTACCTCCATTCCGAATTACAC 57.980 43.478 0.00 0.00 0.00 2.90
227 229 2.104967 TGTGGTACTACCTCCATTCCG 58.895 52.381 6.93 0.00 39.58 4.30
234 236 4.863131 CGAACTTCAATGTGGTACTACCTC 59.137 45.833 6.93 3.74 39.58 3.85
244 246 1.734465 GAGGCCTCGAACTTCAATGTG 59.266 52.381 19.06 0.00 0.00 3.21
256 258 7.639945 CAAAAATAATACTAAAGGAGGCCTCG 58.360 38.462 26.36 14.50 30.89 4.63
270 272 3.490249 GGCCTCACCCGCAAAAATAATAC 60.490 47.826 0.00 0.00 0.00 1.89
314 316 5.178797 CGATTTTCCTGTTCCTGTGATACT 58.821 41.667 0.00 0.00 0.00 2.12
321 323 4.846779 TTTTCCGATTTTCCTGTTCCTG 57.153 40.909 0.00 0.00 0.00 3.86
345 347 9.941325 ACATATCTTGCTCTATAAGAATTGAGG 57.059 33.333 0.00 0.00 37.67 3.86
355 357 9.159364 GCATCAAATGACATATCTTGCTCTATA 57.841 33.333 0.00 0.00 0.00 1.31
482 484 4.400529 TTTTCTTTGGAGCCTTTGGTTC 57.599 40.909 0.00 0.00 32.00 3.62
483 485 4.835284 TTTTTCTTTGGAGCCTTTGGTT 57.165 36.364 0.00 0.00 0.00 3.67
510 512 8.642432 GGGATTCTAAAGGATGGGATTTTTAAG 58.358 37.037 0.00 0.00 0.00 1.85
552 557 4.997395 TCAGTTACTCAAGCCTCATTTGAC 59.003 41.667 0.00 0.00 31.66 3.18
554 559 5.702670 TCTTCAGTTACTCAAGCCTCATTTG 59.297 40.000 0.00 0.00 0.00 2.32
557 562 4.323104 GGTCTTCAGTTACTCAAGCCTCAT 60.323 45.833 0.00 0.00 0.00 2.90
569 574 0.818938 TATGCGCCGGTCTTCAGTTA 59.181 50.000 4.18 0.00 0.00 2.24
641 653 1.519455 GATCGTTGGAGAGGTGGCG 60.519 63.158 0.00 0.00 0.00 5.69
782 794 2.162921 CTCGTGTGTTCTTGGCTGCG 62.163 60.000 0.00 0.00 0.00 5.18
796 808 1.571460 GCTGTGCAGGTTTCTCGTG 59.429 57.895 1.11 0.00 35.34 4.35
831 843 3.008240 CTCTGCTCGTTGCGCTGTG 62.008 63.158 9.73 0.55 46.63 3.66
832 844 2.736236 CTCTGCTCGTTGCGCTGT 60.736 61.111 9.73 0.00 46.63 4.40
833 845 2.431430 TCTCTGCTCGTTGCGCTG 60.431 61.111 9.73 0.00 46.63 5.18
834 846 1.943116 ATCTCTCTGCTCGTTGCGCT 61.943 55.000 9.73 0.00 46.63 5.92
835 847 0.248661 TATCTCTCTGCTCGTTGCGC 60.249 55.000 0.00 0.00 46.63 6.09
848 877 0.553819 AGTGTCGGGCCTCTATCTCT 59.446 55.000 0.84 0.00 0.00 3.10
849 878 1.067821 CAAGTGTCGGGCCTCTATCTC 59.932 57.143 0.84 0.00 0.00 2.75
850 879 1.115467 CAAGTGTCGGGCCTCTATCT 58.885 55.000 0.84 0.00 0.00 1.98
851 880 0.530870 GCAAGTGTCGGGCCTCTATC 60.531 60.000 0.84 0.00 0.00 2.08
852 881 1.522569 GCAAGTGTCGGGCCTCTAT 59.477 57.895 0.84 0.00 0.00 1.98
853 882 2.978824 GCAAGTGTCGGGCCTCTA 59.021 61.111 0.84 0.00 0.00 2.43
908 937 5.241728 GGTCTTGCTAATAATGGATGGTTCC 59.758 44.000 0.00 0.00 42.94 3.62
909 938 5.827797 TGGTCTTGCTAATAATGGATGGTTC 59.172 40.000 0.00 0.00 0.00 3.62
927 956 0.109086 CGACGACAGCATCTGGTCTT 60.109 55.000 0.00 0.00 35.51 3.01
931 960 1.869574 CGACGACGACAGCATCTGG 60.870 63.158 0.00 0.00 42.66 3.86
932 961 1.128724 GACGACGACGACAGCATCTG 61.129 60.000 15.32 0.00 42.66 2.90
933 962 1.134901 GACGACGACGACAGCATCT 59.865 57.895 15.32 0.00 42.66 2.90
934 963 0.523546 ATGACGACGACGACAGCATC 60.524 55.000 15.32 0.13 45.23 3.91
935 964 0.523546 GATGACGACGACGACAGCAT 60.524 55.000 19.86 13.75 45.76 3.79
936 965 1.154282 GATGACGACGACGACAGCA 60.154 57.895 19.86 10.21 45.76 4.41
937 966 2.209076 CGATGACGACGACGACAGC 61.209 63.158 15.32 15.71 45.23 4.40
938 967 0.852412 GACGATGACGACGACGACAG 60.852 60.000 15.32 5.92 45.23 3.51
939 968 1.131218 GACGATGACGACGACGACA 59.869 57.895 15.32 14.76 45.90 4.35
940 969 1.579626 GGACGATGACGACGACGAC 60.580 63.158 15.32 8.68 42.66 4.34
941 970 2.780643 GGACGATGACGACGACGA 59.219 61.111 15.32 0.00 42.66 4.20
942 971 2.643790 CGGACGATGACGACGACG 60.644 66.667 5.58 5.58 42.10 5.12
977 1006 2.058595 GTGGCTAAGAGAGGGCGGA 61.059 63.158 0.00 0.00 0.00 5.54
978 1007 2.359169 TGTGGCTAAGAGAGGGCGG 61.359 63.158 0.00 0.00 0.00 6.13
979 1008 1.153549 GTGTGGCTAAGAGAGGGCG 60.154 63.158 0.00 0.00 0.00 6.13
980 1009 0.176910 GAGTGTGGCTAAGAGAGGGC 59.823 60.000 0.00 0.00 0.00 5.19
981 1010 1.205893 GTGAGTGTGGCTAAGAGAGGG 59.794 57.143 0.00 0.00 0.00 4.30
982 1011 1.135257 CGTGAGTGTGGCTAAGAGAGG 60.135 57.143 0.00 0.00 0.00 3.69
987 1016 2.288213 TGTCTTCGTGAGTGTGGCTAAG 60.288 50.000 0.00 0.00 0.00 2.18
996 1025 2.729862 GCGCGTGTCTTCGTGAGT 60.730 61.111 8.43 0.00 42.80 3.41
1037 1077 4.059459 GTGACGCGAGCCAACGTG 62.059 66.667 15.93 4.11 43.71 4.49
1084 1128 1.578215 ATGTGCTTCCCCTCCATGCT 61.578 55.000 0.00 0.00 0.00 3.79
1290 1334 2.159184 GGGCGTTTACCTGAGGTAGTAC 60.159 54.545 11.73 12.55 39.52 2.73
1309 1353 0.887387 TTTTTGCGACGGAAGGAGGG 60.887 55.000 1.12 0.00 0.00 4.30
1310 1354 0.237498 GTTTTTGCGACGGAAGGAGG 59.763 55.000 1.12 0.00 0.00 4.30
1451 1496 5.463286 TGCACATCACACAGAAATGATTTC 58.537 37.500 9.82 9.82 39.96 2.17
1452 1497 5.456548 TGCACATCACACAGAAATGATTT 57.543 34.783 0.00 0.00 33.18 2.17
1453 1498 5.184287 TGATGCACATCACACAGAAATGATT 59.816 36.000 9.23 0.00 42.42 2.57
1454 1499 4.703093 TGATGCACATCACACAGAAATGAT 59.297 37.500 9.23 0.00 42.42 2.45
1516 1561 6.920210 CACAAACTCTGGATTTTTCTTCTTCC 59.080 38.462 0.00 0.00 0.00 3.46
1523 1568 7.012421 AGACTACACACAAACTCTGGATTTTTC 59.988 37.037 0.00 0.00 0.00 2.29
1532 1577 7.170998 CGGAAAATTAGACTACACACAAACTCT 59.829 37.037 0.00 0.00 0.00 3.24
1546 1591 3.541632 TCCATGAGGCGGAAAATTAGAC 58.458 45.455 0.00 0.00 33.74 2.59
1548 1593 2.291741 GCTCCATGAGGCGGAAAATTAG 59.708 50.000 0.00 0.00 33.74 1.73
1550 1595 1.106285 GCTCCATGAGGCGGAAAATT 58.894 50.000 0.00 0.00 33.74 1.82
1551 1596 0.257039 AGCTCCATGAGGCGGAAAAT 59.743 50.000 0.00 0.00 33.74 1.82
1552 1597 0.038166 AAGCTCCATGAGGCGGAAAA 59.962 50.000 0.00 0.00 33.74 2.29
1553 1598 0.038166 AAAGCTCCATGAGGCGGAAA 59.962 50.000 0.00 0.00 33.74 3.13
1554 1599 0.677731 CAAAGCTCCATGAGGCGGAA 60.678 55.000 0.00 0.00 33.74 4.30
1555 1600 1.078214 CAAAGCTCCATGAGGCGGA 60.078 57.895 0.00 0.00 33.74 5.54
1556 1601 2.768492 GCAAAGCTCCATGAGGCGG 61.768 63.158 0.00 0.00 33.74 6.13
1557 1602 2.796651 GCAAAGCTCCATGAGGCG 59.203 61.111 0.00 0.00 33.74 5.52
1626 1672 1.079503 GCGATTCTGTCACCACCTTC 58.920 55.000 0.00 0.00 0.00 3.46
1696 1742 0.243636 CCGCCTTTCATGGAACCAAC 59.756 55.000 0.00 0.00 0.00 3.77
1697 1743 0.178975 ACCGCCTTTCATGGAACCAA 60.179 50.000 0.00 0.00 0.00 3.67
1698 1744 0.178975 AACCGCCTTTCATGGAACCA 60.179 50.000 0.00 0.00 0.00 3.67
1699 1745 1.471287 GTAACCGCCTTTCATGGAACC 59.529 52.381 0.00 0.00 0.00 3.62
1734 1780 8.994429 TTTCACTTCTTCTTTTACATGCAAAA 57.006 26.923 3.85 3.85 0.00 2.44
1755 1801 9.883142 AATTACACAAAAACTCTGGATTTTTCA 57.117 25.926 0.48 0.00 37.19 2.69
1760 1806 9.533253 CTGAAAATTACACAAAAACTCTGGATT 57.467 29.630 0.00 0.00 0.00 3.01
1761 1807 7.653311 GCTGAAAATTACACAAAAACTCTGGAT 59.347 33.333 0.00 0.00 0.00 3.41
1762 1808 6.978080 GCTGAAAATTACACAAAAACTCTGGA 59.022 34.615 0.00 0.00 0.00 3.86
1763 1809 6.200854 GGCTGAAAATTACACAAAAACTCTGG 59.799 38.462 0.00 0.00 0.00 3.86
1764 1810 6.980397 AGGCTGAAAATTACACAAAAACTCTG 59.020 34.615 0.00 0.00 0.00 3.35
1765 1811 7.112452 AGGCTGAAAATTACACAAAAACTCT 57.888 32.000 0.00 0.00 0.00 3.24
1785 1831 1.305623 CCCAAAGCTCCATGAGGCT 59.694 57.895 0.00 0.00 40.85 4.58
1790 1836 2.517959 TCAGAAACCCAAAGCTCCATG 58.482 47.619 0.00 0.00 0.00 3.66
1802 1848 7.032377 AGACATTTCACTTCTTTCAGAAACC 57.968 36.000 0.00 0.00 33.19 3.27
1855 1901 0.173481 GCATAGCGACTCTGTCACCA 59.827 55.000 0.00 0.00 32.09 4.17
1856 1902 0.457851 AGCATAGCGACTCTGTCACC 59.542 55.000 0.00 0.00 32.09 4.02
1858 1904 1.177401 ACAGCATAGCGACTCTGTCA 58.823 50.000 0.00 0.00 35.05 3.58
1859 1905 1.833860 GACAGCATAGCGACTCTGTC 58.166 55.000 12.21 12.21 45.50 3.51
1860 1906 1.133982 CTGACAGCATAGCGACTCTGT 59.866 52.381 3.12 3.12 41.90 3.41
1861 1907 1.403323 TCTGACAGCATAGCGACTCTG 59.597 52.381 0.00 0.00 0.00 3.35
1862 1908 1.756430 TCTGACAGCATAGCGACTCT 58.244 50.000 0.00 0.00 0.00 3.24
1863 1909 2.159310 AGTTCTGACAGCATAGCGACTC 60.159 50.000 0.00 0.00 0.00 3.36
1864 1910 1.821753 AGTTCTGACAGCATAGCGACT 59.178 47.619 0.00 0.00 0.00 4.18
1865 1911 2.189342 GAGTTCTGACAGCATAGCGAC 58.811 52.381 0.00 0.00 0.00 5.19
1866 1912 1.202188 CGAGTTCTGACAGCATAGCGA 60.202 52.381 0.00 0.00 0.00 4.93
1867 1913 1.195347 CGAGTTCTGACAGCATAGCG 58.805 55.000 0.00 0.00 0.00 4.26
1868 1914 1.135139 TCCGAGTTCTGACAGCATAGC 59.865 52.381 0.00 0.00 0.00 2.97
1869 1915 3.724508 ATCCGAGTTCTGACAGCATAG 57.275 47.619 0.00 0.00 0.00 2.23
1870 1916 4.401202 TGTAATCCGAGTTCTGACAGCATA 59.599 41.667 0.00 0.00 0.00 3.14
1871 1917 3.195610 TGTAATCCGAGTTCTGACAGCAT 59.804 43.478 0.00 0.00 0.00 3.79
1872 1918 2.560981 TGTAATCCGAGTTCTGACAGCA 59.439 45.455 0.00 0.00 0.00 4.41
1873 1919 3.182967 CTGTAATCCGAGTTCTGACAGC 58.817 50.000 0.00 0.00 0.00 4.40
1874 1920 3.775202 CCTGTAATCCGAGTTCTGACAG 58.225 50.000 0.00 0.00 34.07 3.51
1875 1921 2.094182 GCCTGTAATCCGAGTTCTGACA 60.094 50.000 0.00 0.00 0.00 3.58
1876 1922 2.094182 TGCCTGTAATCCGAGTTCTGAC 60.094 50.000 0.00 0.00 0.00 3.51
1877 1923 2.166459 CTGCCTGTAATCCGAGTTCTGA 59.834 50.000 0.00 0.00 0.00 3.27
1878 1924 2.544685 CTGCCTGTAATCCGAGTTCTG 58.455 52.381 0.00 0.00 0.00 3.02
1879 1925 1.482593 CCTGCCTGTAATCCGAGTTCT 59.517 52.381 0.00 0.00 0.00 3.01
1880 1926 1.480954 TCCTGCCTGTAATCCGAGTTC 59.519 52.381 0.00 0.00 0.00 3.01
1881 1927 1.482593 CTCCTGCCTGTAATCCGAGTT 59.517 52.381 0.00 0.00 0.00 3.01
1890 1936 0.984230 CTGGGTTTCTCCTGCCTGTA 59.016 55.000 0.00 0.00 36.25 2.74
1926 1972 6.245408 ACTGACAACATAGAGAGACTCTTCT 58.755 40.000 6.40 7.88 41.50 2.85
1979 2025 5.643777 AGTAAACTAGTGTCATGCATGGTTC 59.356 40.000 25.97 16.44 0.00 3.62
1998 2044 2.284150 GTGCGCGCAATCTATCAGTAAA 59.716 45.455 38.24 4.21 0.00 2.01
2000 2046 1.067060 AGTGCGCGCAATCTATCAGTA 59.933 47.619 38.24 5.02 0.00 2.74
2026 2072 7.986085 AGCAGAATTGTACACTAGAAAACAT 57.014 32.000 0.00 0.00 0.00 2.71
2034 2080 6.296026 AGGTGAAAAGCAGAATTGTACACTA 58.704 36.000 0.00 0.00 0.00 2.74
2035 2081 5.133221 AGGTGAAAAGCAGAATTGTACACT 58.867 37.500 0.00 0.00 0.00 3.55
2257 2303 1.952296 CAAGCAAAGTCCTTGAGCTGT 59.048 47.619 0.00 0.00 41.64 4.40
2407 2453 9.140286 GCAAAACTTACCTTTATGAGAAAATCC 57.860 33.333 0.00 0.00 0.00 3.01
2432 2478 1.020437 GCAAGGACTAATGCTCCAGC 58.980 55.000 0.00 0.00 39.46 4.85
2434 2480 0.613260 ACGCAAGGACTAATGCTCCA 59.387 50.000 0.00 0.00 46.39 3.86
2453 2499 7.696755 TCTAAAACATATCTAGCGACGTGTAA 58.303 34.615 0.00 0.00 0.00 2.41
2454 2500 7.250445 TCTAAAACATATCTAGCGACGTGTA 57.750 36.000 0.00 0.00 0.00 2.90
2455 2501 6.127810 TCTAAAACATATCTAGCGACGTGT 57.872 37.500 0.00 0.00 0.00 4.49
2456 2502 8.789743 CATATCTAAAACATATCTAGCGACGTG 58.210 37.037 0.00 0.00 0.00 4.49
2457 2503 8.512956 ACATATCTAAAACATATCTAGCGACGT 58.487 33.333 0.00 0.00 0.00 4.34
2470 2516 9.800433 CCATTGCATTACAACATATCTAAAACA 57.200 29.630 0.00 0.00 42.27 2.83
2471 2517 9.801873 ACCATTGCATTACAACATATCTAAAAC 57.198 29.630 0.00 0.00 42.27 2.43
2476 2522 8.796475 GGAATACCATTGCATTACAACATATCT 58.204 33.333 0.00 0.00 42.27 1.98
2493 2539 3.019564 GTGAAGCTGCAAGGAATACCAT 58.980 45.455 0.00 0.00 38.94 3.55
2498 2544 1.589716 GCCGTGAAGCTGCAAGGAAT 61.590 55.000 29.07 0.00 39.40 3.01
2588 2635 5.920193 AACAGTATGCAACTATGGCAAAT 57.080 34.783 0.00 0.00 45.60 2.32
2644 2691 7.922278 GCCAATGTATCAAAAATAAGCTCATGA 59.078 33.333 0.00 0.00 0.00 3.07
2665 2712 4.463539 TGATGCAGAACAAATAGTGCCAAT 59.536 37.500 0.00 0.00 34.91 3.16
2667 2714 3.191162 GTGATGCAGAACAAATAGTGCCA 59.809 43.478 0.00 0.00 34.91 4.92
2673 2720 5.550290 TCAGTGAGTGATGCAGAACAAATA 58.450 37.500 0.00 0.00 0.00 1.40
2689 2736 7.794349 GTCGACAAACTAAAAAGAATCAGTGAG 59.206 37.037 11.55 0.00 0.00 3.51
2876 2923 5.449113 CGAATACAAACTAAATGCTGAAGCG 59.551 40.000 0.00 0.00 45.83 4.68
2993 3040 7.944061 TCCATCCAGTTTGCATAAATAGAATG 58.056 34.615 0.00 0.00 0.00 2.67
2996 3043 6.889177 TGTTCCATCCAGTTTGCATAAATAGA 59.111 34.615 0.00 0.00 0.00 1.98
3146 3194 6.676237 TCAAATGCACACGACATACATATT 57.324 33.333 0.00 0.00 0.00 1.28
3147 3195 6.676237 TTCAAATGCACACGACATACATAT 57.324 33.333 0.00 0.00 0.00 1.78
3333 3384 5.895636 AATGGTCGATGCTTTATTCACAA 57.104 34.783 0.00 0.00 0.00 3.33
3336 3387 8.147704 TCAGTATAATGGTCGATGCTTTATTCA 58.852 33.333 0.00 0.00 0.00 2.57
3348 3399 8.411683 AGTTAGGTAAAGTCAGTATAATGGTCG 58.588 37.037 0.00 0.00 0.00 4.79
3354 3405 7.181485 AGGCCAAGTTAGGTAAAGTCAGTATAA 59.819 37.037 5.01 0.00 0.00 0.98
3425 3476 4.159506 TGCAACTGAATTTAGTTATGCCCC 59.840 41.667 18.90 5.76 38.78 5.80
3524 3575 4.837860 ACCTCCTGCAACATAAAATGGAAA 59.162 37.500 0.00 0.00 33.60 3.13
3527 3578 6.293407 CGTATACCTCCTGCAACATAAAATGG 60.293 42.308 0.00 0.00 33.60 3.16
3550 3601 3.672511 CGGTCATACTGCTTTGTCTACGT 60.673 47.826 0.00 0.00 0.00 3.57
3643 3699 6.950619 ACTTTCAGAGCTCCTGGAAATTTATT 59.049 34.615 19.81 6.15 39.78 1.40
3685 3742 5.356291 AGTAGATGCATTTCTTCTGAGCT 57.644 39.130 0.00 0.00 32.25 4.09
3741 3798 3.618690 ATGACCTGAGTTACTTGGAGC 57.381 47.619 11.20 4.90 0.00 4.70
3763 3820 4.202141 TGCAAGTCTTTCAAAAGGACATGG 60.202 41.667 0.00 0.00 36.67 3.66
3787 3844 5.637387 GGTGACGAAATTTATTTTGTGCCAT 59.363 36.000 11.77 0.00 42.76 4.40
3808 3865 8.885494 TGAAAACAAATAATTTCCTCAAGGTG 57.115 30.769 0.00 0.00 35.23 4.00
3843 3900 6.183360 TGGAAAAGCTCAAATACACACAATGT 60.183 34.615 0.00 0.00 46.06 2.71
3845 3902 6.215845 GTGGAAAAGCTCAAATACACACAAT 58.784 36.000 0.00 0.00 0.00 2.71
3862 3919 4.069304 AGTAAGCAGCATAACGTGGAAAA 58.931 39.130 0.00 0.00 0.00 2.29
3868 3925 2.699954 AGCAAGTAAGCAGCATAACGT 58.300 42.857 0.00 0.00 36.85 3.99
3870 3927 4.094887 TGCTAAGCAAGTAAGCAGCATAAC 59.905 41.667 0.00 0.00 41.15 1.89
3879 3936 6.032094 CCATTTGACATGCTAAGCAAGTAAG 58.968 40.000 0.00 0.00 40.58 2.34
3941 3998 9.182214 AGTGATAATTGTTGCATTTAGATCTGT 57.818 29.630 5.18 0.00 0.00 3.41
3958 4015 8.978874 TGTGCATTACTTCCATAGTGATAATT 57.021 30.769 0.00 0.00 37.73 1.40
3962 4019 6.095440 GGTTTGTGCATTACTTCCATAGTGAT 59.905 38.462 0.00 0.00 37.73 3.06
3963 4020 5.414454 GGTTTGTGCATTACTTCCATAGTGA 59.586 40.000 0.00 0.00 37.73 3.41
3967 4024 4.393680 GTCGGTTTGTGCATTACTTCCATA 59.606 41.667 0.00 0.00 0.00 2.74
3976 4033 1.531149 CTTCTCGTCGGTTTGTGCATT 59.469 47.619 0.00 0.00 0.00 3.56
3986 4043 5.632347 ACATAAACAAACTACTTCTCGTCGG 59.368 40.000 0.00 0.00 0.00 4.79
4012 4069 0.673333 TGCGGTGCATCGACAGAAAT 60.673 50.000 26.37 0.00 31.71 2.17
4029 4086 3.367025 GTGTAGGATAACGTGAACACTGC 59.633 47.826 0.00 0.00 35.50 4.40
4055 4112 9.016438 GTCCATACCTTCCAAGTAAAAATGTTA 57.984 33.333 0.00 0.00 0.00 2.41
4117 4178 4.156556 TCCAACTTTGTGCATGAGATAAGC 59.843 41.667 0.00 0.00 0.00 3.09
4323 4393 9.480053 CTTGTACCAACATTTTCTCATCAAAAT 57.520 29.630 0.00 0.00 36.57 1.82
4997 5074 1.070577 CAAACCTTTCGAGCGTCAGTG 60.071 52.381 0.00 0.00 0.00 3.66
5036 5113 2.892784 ATAGCGGAACCTAGAAGTGC 57.107 50.000 0.00 0.00 0.00 4.40
5062 5173 3.917629 TGGAACCAAGGGGAGTACAAATA 59.082 43.478 0.00 0.00 38.05 1.40
5063 5174 2.719705 TGGAACCAAGGGGAGTACAAAT 59.280 45.455 0.00 0.00 38.05 2.32
5075 5186 9.467258 CTACATGCATTATATTTTGGAACCAAG 57.533 33.333 0.00 0.00 37.24 3.61
5118 5229 4.547406 ACTTGGTCAAACTTTACGAAGC 57.453 40.909 0.00 0.00 35.55 3.86
5170 5281 8.994429 ACCAAATAAACATTGCATTTATTCGA 57.006 26.923 14.01 0.00 39.95 3.71
5211 5322 7.562088 AGTTTGACCAACTTTATAGGGAAAACA 59.438 33.333 0.00 0.00 43.89 2.83
5273 5386 5.853572 ACTCCCCCTGTTCTAAAATACAA 57.146 39.130 0.00 0.00 0.00 2.41
5287 5400 6.920695 AAACAATAAATAGGTACTCCCCCT 57.079 37.500 0.00 0.00 41.75 4.79
5322 5435 3.117926 TGCCTATGCTAGAAATCAAGCCA 60.118 43.478 0.00 0.00 38.71 4.75
5421 5534 3.997021 GTCGGAGCAATTCTCTTTTCAGA 59.003 43.478 0.00 0.00 41.60 3.27
5430 5543 1.023513 GCAGCAGTCGGAGCAATTCT 61.024 55.000 0.00 0.00 0.00 2.40
5912 6026 2.626743 ACTTGCTTGAGCTTCATTTGCT 59.373 40.909 4.44 0.00 44.24 3.91
5957 6071 4.037803 TCACCAAACCACTTTGATGTGATG 59.962 41.667 0.00 0.00 39.43 3.07
6014 6128 0.179056 TGGGCGATACTTTAGCAGCC 60.179 55.000 0.00 0.00 43.47 4.85
6404 6518 8.862085 GGTTGCTAGTTCCTTATAATCTAGACT 58.138 37.037 0.00 0.00 32.47 3.24
6439 6553 1.765314 AGATCACTGCCACTGTATCCC 59.235 52.381 0.00 0.00 0.00 3.85
6507 6621 3.058639 CAGAGCAAACTGAGTTAGCCAAC 60.059 47.826 0.00 0.00 39.94 3.77
6681 6795 2.290514 CCAGTTTCATCTTCTCCTGGCA 60.291 50.000 0.00 0.00 33.71 4.92
6682 6796 2.026822 TCCAGTTTCATCTTCTCCTGGC 60.027 50.000 0.00 0.00 39.42 4.85
6746 6860 4.384940 GCCTTAGAATGATCTCCTTGTCC 58.615 47.826 0.00 0.00 37.10 4.02
6824 6938 8.111836 GCATTTGTGAATACTATTTGCATTGTG 58.888 33.333 0.00 0.00 0.00 3.33
6843 6957 5.392380 GCTTCTACTACATGCTTGCATTTGT 60.392 40.000 5.24 6.25 0.00 2.83
6895 7009 3.753272 TGTCCAAGTTATCAGCTTTCAGC 59.247 43.478 0.00 0.00 42.84 4.26
6913 7027 6.924060 AGATATTAGCACGTTCTAATGTGTCC 59.076 38.462 24.76 10.75 45.44 4.02
6916 7030 6.346919 GCCAGATATTAGCACGTTCTAATGTG 60.347 42.308 24.76 18.86 46.21 3.21
6935 7049 2.633967 TGCAATTCCAAGTTTGCCAGAT 59.366 40.909 5.30 0.00 45.94 2.90
6939 7053 1.070601 ACCTGCAATTCCAAGTTTGCC 59.929 47.619 5.30 0.00 45.94 4.52
6940 7054 2.137523 CACCTGCAATTCCAAGTTTGC 58.862 47.619 0.88 0.88 46.53 3.68
7119 7233 4.979197 CGATAGACTGTCCTTTCATGTAGC 59.021 45.833 3.76 0.00 39.76 3.58
7120 7234 4.979197 GCGATAGACTGTCCTTTCATGTAG 59.021 45.833 3.76 0.00 39.76 2.74
7182 7330 8.367911 CCCTGCAGATTCATTATTAGTGTAGTA 58.632 37.037 17.39 0.00 0.00 1.82
7223 7371 8.931775 GGAGCAAAACTAAAAGAAAGAACAAAA 58.068 29.630 0.00 0.00 0.00 2.44
7266 7414 3.864789 ATACACAAGACATGGGGGATC 57.135 47.619 0.00 0.00 36.45 3.36
7270 7418 4.654262 ACTACCTATACACAAGACATGGGG 59.346 45.833 0.00 0.00 36.45 4.96
7271 7419 5.871396 ACTACCTATACACAAGACATGGG 57.129 43.478 0.00 0.00 38.89 4.00
7298 7446 0.602905 ACGACAACCTACCAAGCAGC 60.603 55.000 0.00 0.00 0.00 5.25
7301 7449 0.872388 CCAACGACAACCTACCAAGC 59.128 55.000 0.00 0.00 0.00 4.01
7315 7463 2.292016 TGATACTGTTTTGTGGCCAACG 59.708 45.455 7.24 1.17 0.00 4.10
7351 7500 5.474578 TCATGAGGGAAGCATACTGATAC 57.525 43.478 0.00 0.00 0.00 2.24
7352 7501 6.499699 AGATTCATGAGGGAAGCATACTGATA 59.500 38.462 0.00 0.00 35.70 2.15
7366 7518 6.232581 AGGAGTTTCACTAGATTCATGAGG 57.767 41.667 0.00 0.00 0.00 3.86
7443 7597 6.805271 CAGTACACGCTTATTTACAGTACACT 59.195 38.462 0.00 0.00 34.41 3.55
7459 7613 5.061808 CAGTACAAGGATTAACAGTACACGC 59.938 44.000 0.00 0.00 37.96 5.34
7460 7614 6.154445 ACAGTACAAGGATTAACAGTACACG 58.846 40.000 0.00 0.00 37.96 4.49
7461 7615 9.480053 TTTACAGTACAAGGATTAACAGTACAC 57.520 33.333 0.00 0.00 37.96 2.90
7465 7619 9.436957 CTCATTTACAGTACAAGGATTAACAGT 57.563 33.333 0.00 0.00 0.00 3.55
7510 7680 7.118390 AGTGTCAGTATTCTCAAATTGTAGTGC 59.882 37.037 0.00 0.00 0.00 4.40
7526 7701 6.127786 GGAAACTTACCGACTAGTGTCAGTAT 60.128 42.308 0.00 0.00 43.06 2.12
7566 7741 4.528596 AGGAGTGGAGATTCTCGAGAAAAA 59.471 41.667 30.18 9.99 37.61 1.94
7567 7742 4.090090 AGGAGTGGAGATTCTCGAGAAAA 58.910 43.478 30.18 10.79 37.61 2.29
7568 7743 3.702792 AGGAGTGGAGATTCTCGAGAAA 58.297 45.455 30.18 12.02 37.61 2.52
7569 7744 3.374042 AGGAGTGGAGATTCTCGAGAA 57.626 47.619 28.85 28.85 38.56 2.87
7570 7745 3.456644 AGTAGGAGTGGAGATTCTCGAGA 59.543 47.826 12.08 12.08 0.00 4.04
7571 7746 3.815809 AGTAGGAGTGGAGATTCTCGAG 58.184 50.000 5.93 5.93 0.00 4.04
7572 7747 3.935818 AGTAGGAGTGGAGATTCTCGA 57.064 47.619 7.57 0.68 0.00 4.04
7573 7748 5.533154 ACATAAGTAGGAGTGGAGATTCTCG 59.467 44.000 7.57 0.00 0.00 4.04
7574 7749 6.744112 CACATAAGTAGGAGTGGAGATTCTC 58.256 44.000 5.03 5.03 0.00 2.87
7575 7750 6.723298 CACATAAGTAGGAGTGGAGATTCT 57.277 41.667 0.00 0.00 0.00 2.40
7583 7758 7.122948 AGTTTCTCTACCACATAAGTAGGAGTG 59.877 40.741 0.00 0.00 38.20 3.51
7584 7759 7.183460 AGTTTCTCTACCACATAAGTAGGAGT 58.817 38.462 0.00 0.00 38.20 3.85
7585 7760 7.201839 GGAGTTTCTCTACCACATAAGTAGGAG 60.202 44.444 0.00 0.00 38.20 3.69
7586 7761 6.606395 GGAGTTTCTCTACCACATAAGTAGGA 59.394 42.308 0.00 0.00 38.20 2.94
7587 7762 6.380274 TGGAGTTTCTCTACCACATAAGTAGG 59.620 42.308 0.00 0.00 38.20 3.18
7588 7763 7.406031 TGGAGTTTCTCTACCACATAAGTAG 57.594 40.000 0.00 0.00 38.86 2.57
7589 7764 6.127423 GCTGGAGTTTCTCTACCACATAAGTA 60.127 42.308 0.00 0.00 0.00 2.24
7590 7765 5.337652 GCTGGAGTTTCTCTACCACATAAGT 60.338 44.000 0.00 0.00 0.00 2.24
7591 7766 5.112686 GCTGGAGTTTCTCTACCACATAAG 58.887 45.833 0.00 0.00 0.00 1.73
7592 7767 4.530553 TGCTGGAGTTTCTCTACCACATAA 59.469 41.667 0.00 0.00 0.00 1.90
7593 7768 4.093743 TGCTGGAGTTTCTCTACCACATA 58.906 43.478 0.00 0.00 0.00 2.29
7615 7790 0.672889 TGCATCGTTGGCACACAATT 59.327 45.000 0.00 0.00 41.95 2.32
7688 8097 8.847196 TCGTTTCTATTGTACTACTGCTATCAT 58.153 33.333 0.00 0.00 0.00 2.45
7693 8102 6.512342 ACTCGTTTCTATTGTACTACTGCT 57.488 37.500 0.00 0.00 0.00 4.24
7694 8103 7.246311 TGTACTCGTTTCTATTGTACTACTGC 58.754 38.462 0.00 0.00 35.76 4.40
7695 8104 9.222916 CATGTACTCGTTTCTATTGTACTACTG 57.777 37.037 0.00 0.00 35.76 2.74
7798 8211 0.390603 TCGCATGGGTACGGTTTCTG 60.391 55.000 9.86 0.00 0.00 3.02
7854 8267 0.386838 GCAGAGGCAGCACTTGTTTT 59.613 50.000 0.00 0.00 40.72 2.43
7899 8312 2.482142 CGACTTTGATGAGAGTAGCCCC 60.482 54.545 0.00 0.00 0.00 5.80
7900 8313 2.815478 CGACTTTGATGAGAGTAGCCC 58.185 52.381 0.00 0.00 0.00 5.19
7927 8341 5.057819 TGTGTTATGTAAGGCTGTTTTCGA 58.942 37.500 0.00 0.00 0.00 3.71
7958 8374 1.879380 TGAGCACCAAATTTCTCACCG 59.121 47.619 3.79 0.00 31.35 4.94
8019 8435 1.108727 AACGAGTGGTACCGTGTGGA 61.109 55.000 7.57 0.00 39.14 4.02
8228 8650 4.046286 TGGATTTGGCTAACAGTGGATT 57.954 40.909 0.00 0.00 0.00 3.01
8253 8677 3.160269 CCATTTTCAGCAACTCTTCCCT 58.840 45.455 0.00 0.00 0.00 4.20
8261 8685 7.865385 TCAACTTTGTATACCATTTTCAGCAAC 59.135 33.333 0.00 0.00 0.00 4.17
8262 8686 7.946207 TCAACTTTGTATACCATTTTCAGCAA 58.054 30.769 0.00 0.00 0.00 3.91
8267 8694 8.406297 GGGATCTCAACTTTGTATACCATTTTC 58.594 37.037 0.00 0.00 30.74 2.29
8280 8707 5.892348 ACATTGGTAAGGGATCTCAACTTT 58.108 37.500 0.00 0.00 0.00 2.66
8281 8708 5.520748 ACATTGGTAAGGGATCTCAACTT 57.479 39.130 0.00 0.00 0.00 2.66
8409 8836 3.498397 ACCAAGCGTTGTTCTTACATCAG 59.502 43.478 0.00 0.00 33.44 2.90
8417 8844 4.499019 CCATTGTTTACCAAGCGTTGTTCT 60.499 41.667 0.00 0.00 36.25 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.