Multiple sequence alignment - TraesCS3B01G177800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G177800 chr3B 100.000 3311 0 0 1 3311 181678587 181675277 0.000000e+00 6115
1 TraesCS3B01G177800 chr3B 88.627 255 28 1 4 257 181891904 181891650 3.210000e-80 309
2 TraesCS3B01G177800 chr3A 90.428 2758 152 48 555 3228 138286473 138283744 0.000000e+00 3528
3 TraesCS3B01G177800 chr3A 89.502 562 24 13 5 542 138287070 138286520 0.000000e+00 678
4 TraesCS3B01G177800 chr3D 91.299 2563 119 46 1 2490 127656651 127654120 0.000000e+00 3402
5 TraesCS3B01G177800 chr3D 94.040 604 23 7 2600 3193 127654065 127653465 0.000000e+00 904
6 TraesCS3B01G177800 chr3D 100.000 60 0 0 2515 2574 127654124 127654065 9.710000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G177800 chr3B 181675277 181678587 3310 True 6115.000000 6115 100.000 1 3311 1 chr3B.!!$R1 3310
1 TraesCS3B01G177800 chr3A 138283744 138287070 3326 True 2103.000000 3528 89.965 5 3228 2 chr3A.!!$R1 3223
2 TraesCS3B01G177800 chr3D 127653465 127656651 3186 True 1472.333333 3402 95.113 1 3193 3 chr3D.!!$R1 3192

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1082 0.460987 CAATCAGGAGGAGTGGCGAC 60.461 60.0 0.0 0.0 37.93 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2578 2710 0.394352 GCGACTTGACATTGGGGGAT 60.394 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.012560 AGGAAACTGCACAGTGAGC 57.987 52.632 4.15 5.50 41.58 4.26
91 92 0.663153 ACAGCGGCAGTTTCAACTTC 59.337 50.000 1.45 0.00 37.08 3.01
96 97 1.864711 CGGCAGTTTCAACTTCGAGAA 59.135 47.619 6.42 0.00 37.08 2.87
103 104 0.599204 TCAACTTCGAGAACACCGCC 60.599 55.000 0.00 0.00 0.00 6.13
169 171 8.615211 CAAGGAAAGAAAAAGGAAAAAGATTGG 58.385 33.333 0.00 0.00 0.00 3.16
286 288 3.315769 CTCGCGCTCGTCTGACAGT 62.316 63.158 5.56 0.00 36.96 3.55
288 290 1.062685 CGCGCTCGTCTGACAGTAT 59.937 57.895 5.56 0.00 0.00 2.12
296 307 1.001268 CGTCTGACAGTATCCCATCGG 60.001 57.143 8.73 0.00 0.00 4.18
307 323 1.967319 TCCCATCGGCTTTTATCAGC 58.033 50.000 0.00 0.00 39.28 4.26
333 349 1.134310 TGTAGCATGCATCTCCTGTGG 60.134 52.381 21.98 0.00 0.00 4.17
367 399 2.554142 GATCATTGTGATCCGTGAGCA 58.446 47.619 8.41 0.00 45.66 4.26
368 400 2.286294 GATCATTGTGATCCGTGAGCAC 59.714 50.000 13.24 13.24 45.66 4.40
405 438 1.308998 AGGCGTTTGTTTCTGTGAGG 58.691 50.000 0.00 0.00 0.00 3.86
406 439 1.134220 AGGCGTTTGTTTCTGTGAGGA 60.134 47.619 0.00 0.00 0.00 3.71
407 440 1.673920 GGCGTTTGTTTCTGTGAGGAA 59.326 47.619 0.00 0.00 0.00 3.36
439 472 1.945354 GCCATCCGAGTCGTCTCCAA 61.945 60.000 12.31 0.00 37.40 3.53
455 493 3.118298 TCTCCAAATCGGATGCTTGATGA 60.118 43.478 4.38 0.72 45.19 2.92
456 494 3.819337 CTCCAAATCGGATGCTTGATGAT 59.181 43.478 4.38 0.00 45.19 2.45
457 495 3.566742 TCCAAATCGGATGCTTGATGATG 59.433 43.478 4.38 0.00 39.64 3.07
458 496 3.566742 CCAAATCGGATGCTTGATGATGA 59.433 43.478 4.38 0.00 36.56 2.92
459 497 4.320275 CCAAATCGGATGCTTGATGATGAG 60.320 45.833 4.38 0.00 36.56 2.90
460 498 1.875009 TCGGATGCTTGATGATGAGC 58.125 50.000 0.00 0.00 39.33 4.26
516 554 2.930682 GGTTTTGTCTCTAGTCGGATGC 59.069 50.000 0.00 0.00 0.00 3.91
528 566 1.126846 GTCGGATGCTCGTTGAACTTG 59.873 52.381 0.00 0.00 0.00 3.16
612 685 1.134818 GTCCACGTCACTCATGCCATA 60.135 52.381 0.00 0.00 0.00 2.74
670 743 4.034510 GTCTGGTCACTCACAGTTTCAAAG 59.965 45.833 0.00 0.00 36.17 2.77
695 769 8.352942 AGAAATAAATTCAAAGATATCCGGTGC 58.647 33.333 0.00 0.00 40.72 5.01
862 948 5.735285 CTCATGAGCTCATCTATTACCCA 57.265 43.478 26.44 0.00 33.61 4.51
863 949 5.722263 CTCATGAGCTCATCTATTACCCAG 58.278 45.833 26.44 11.20 33.61 4.45
918 1027 1.562783 CTCCTCCCCGAAAGAGTCTT 58.437 55.000 0.00 0.00 0.00 3.01
919 1028 1.903183 CTCCTCCCCGAAAGAGTCTTT 59.097 52.381 18.05 18.05 0.00 2.52
920 1029 2.303311 CTCCTCCCCGAAAGAGTCTTTT 59.697 50.000 18.96 3.63 0.00 2.27
921 1030 2.302157 TCCTCCCCGAAAGAGTCTTTTC 59.698 50.000 18.96 11.19 34.48 2.29
922 1031 2.303311 CCTCCCCGAAAGAGTCTTTTCT 59.697 50.000 18.96 0.00 35.42 2.52
963 1078 2.093764 GTGAGACAATCAGGAGGAGTGG 60.094 54.545 0.00 0.00 45.60 4.00
964 1079 3.467776 GACAATCAGGAGGAGTGGC 57.532 57.895 0.00 0.00 45.60 5.01
966 1081 0.904865 ACAATCAGGAGGAGTGGCGA 60.905 55.000 0.00 0.00 45.60 5.54
967 1082 0.460987 CAATCAGGAGGAGTGGCGAC 60.461 60.000 0.00 0.00 37.93 5.19
968 1083 0.616111 AATCAGGAGGAGTGGCGACT 60.616 55.000 0.00 0.00 33.98 4.18
969 1084 1.326213 ATCAGGAGGAGTGGCGACTG 61.326 60.000 5.94 0.00 30.16 3.51
970 1085 1.979155 CAGGAGGAGTGGCGACTGA 60.979 63.158 5.94 0.00 30.16 3.41
972 1087 1.979693 GGAGGAGTGGCGACTGAGT 60.980 63.158 5.94 0.00 30.16 3.41
974 1089 1.228583 AGGAGTGGCGACTGAGTGA 60.229 57.895 5.94 0.00 30.16 3.41
976 1091 1.528292 GGAGTGGCGACTGAGTGAGT 61.528 60.000 5.94 0.00 37.76 3.41
978 1093 0.823769 AGTGGCGACTGAGTGAGTGA 60.824 55.000 0.00 0.00 33.83 3.41
1092 1208 3.445687 ACGACCATAGCCGCGTCA 61.446 61.111 4.92 0.00 30.15 4.35
1116 1232 2.261671 GAAGACGGCAGCGAAGGA 59.738 61.111 0.00 0.00 0.00 3.36
2135 2251 1.310904 GCGTCCAAAGGTACCACAAA 58.689 50.000 15.94 0.00 0.00 2.83
2141 2257 2.604139 CAAAGGTACCACAAACCCCAT 58.396 47.619 15.94 0.00 37.77 4.00
2142 2258 2.560981 CAAAGGTACCACAAACCCCATC 59.439 50.000 15.94 0.00 37.77 3.51
2167 2283 4.736896 GTCCCCGCGTCCTGTGAC 62.737 72.222 4.92 0.00 38.18 3.67
2181 2297 2.359850 TGACGGTGGCATTCAGGC 60.360 61.111 0.00 0.00 44.50 4.85
2463 2594 4.799678 CGCTCTCTTCTCTTGTCTTAACA 58.200 43.478 0.00 0.00 0.00 2.41
2578 2710 9.929180 GAGTAGTATGCATGTAAAATATCTCCA 57.071 33.333 10.16 0.00 0.00 3.86
2590 2723 4.664688 AATATCTCCATCCCCCAATGTC 57.335 45.455 0.00 0.00 0.00 3.06
2613 2746 7.594015 TGTCAAGTCGCTTTTCTAGTAAGTAAG 59.406 37.037 8.46 0.00 0.00 2.34
2639 2780 6.927416 TGCTAGCATTTCATTTGAACTTCAT 58.073 32.000 14.93 0.00 33.13 2.57
2670 2811 1.067142 GTGTAATGCGACTGGTCTGGA 60.067 52.381 0.00 0.00 0.00 3.86
2671 2812 1.831106 TGTAATGCGACTGGTCTGGAT 59.169 47.619 0.00 0.00 0.00 3.41
2704 2845 1.360192 GCAAGGGTGTGACTTGTGC 59.640 57.895 6.98 0.00 45.38 4.57
2789 2931 1.249407 CCGTGGAATTCGGGGAAAAA 58.751 50.000 0.00 0.00 43.68 1.94
3186 3364 1.669115 CCCGCGGCTGGATATCTTG 60.669 63.158 22.85 0.00 0.00 3.02
3204 3382 4.295119 ACGTGGAGTGTCCGTGGC 62.295 66.667 0.00 0.00 40.17 5.01
3209 3387 1.966451 GGAGTGTCCGTGGCTTTGG 60.966 63.158 0.00 0.00 0.00 3.28
3230 3408 3.864686 GGCGCGCGATTGTGTCAT 61.865 61.111 37.18 0.00 0.00 3.06
3231 3409 2.098298 GCGCGCGATTGTGTCATT 59.902 55.556 37.18 0.00 0.00 2.57
3232 3410 2.210375 GCGCGCGATTGTGTCATTG 61.210 57.895 37.18 0.00 0.00 2.82
3233 3411 1.132436 CGCGCGATTGTGTCATTGT 59.868 52.632 28.94 0.00 0.00 2.71
3234 3412 1.121850 CGCGCGATTGTGTCATTGTG 61.122 55.000 28.94 0.00 0.00 3.33
3235 3413 0.110238 GCGCGATTGTGTCATTGTGT 60.110 50.000 12.10 0.00 0.00 3.72
3236 3414 1.869503 CGCGATTGTGTCATTGTGTC 58.130 50.000 0.00 0.00 0.00 3.67
3237 3415 1.460743 CGCGATTGTGTCATTGTGTCT 59.539 47.619 0.00 0.00 0.00 3.41
3238 3416 2.096268 CGCGATTGTGTCATTGTGTCTT 60.096 45.455 0.00 0.00 0.00 3.01
3239 3417 3.228749 GCGATTGTGTCATTGTGTCTTG 58.771 45.455 0.00 0.00 0.00 3.02
3240 3418 3.303990 GCGATTGTGTCATTGTGTCTTGT 60.304 43.478 0.00 0.00 0.00 3.16
3241 3419 4.789481 GCGATTGTGTCATTGTGTCTTGTT 60.789 41.667 0.00 0.00 0.00 2.83
3242 3420 5.273170 CGATTGTGTCATTGTGTCTTGTTT 58.727 37.500 0.00 0.00 0.00 2.83
3243 3421 5.396362 CGATTGTGTCATTGTGTCTTGTTTC 59.604 40.000 0.00 0.00 0.00 2.78
3244 3422 5.635417 TTGTGTCATTGTGTCTTGTTTCA 57.365 34.783 0.00 0.00 0.00 2.69
3245 3423 5.635417 TGTGTCATTGTGTCTTGTTTCAA 57.365 34.783 0.00 0.00 0.00 2.69
3246 3424 6.018589 TGTGTCATTGTGTCTTGTTTCAAA 57.981 33.333 0.00 0.00 0.00 2.69
3247 3425 6.450545 TGTGTCATTGTGTCTTGTTTCAAAA 58.549 32.000 0.00 0.00 0.00 2.44
3248 3426 6.925718 TGTGTCATTGTGTCTTGTTTCAAAAA 59.074 30.769 0.00 0.00 0.00 1.94
3273 3451 5.833406 AAAGATTGTGTCATTGTGTGTCA 57.167 34.783 0.00 0.00 0.00 3.58
3274 3452 4.818534 AGATTGTGTCATTGTGTGTCAC 57.181 40.909 0.00 0.00 44.03 3.67
3275 3453 4.454678 AGATTGTGTCATTGTGTGTCACT 58.545 39.130 4.27 0.00 44.07 3.41
3276 3454 4.512944 AGATTGTGTCATTGTGTGTCACTC 59.487 41.667 4.27 0.91 44.07 3.51
3277 3455 3.258971 TGTGTCATTGTGTGTCACTCA 57.741 42.857 4.27 3.93 44.07 3.41
3278 3456 2.935849 TGTGTCATTGTGTGTCACTCAC 59.064 45.455 7.22 2.89 44.07 3.51
3285 3463 4.046998 GTGTCACTCACGCACGCG 62.047 66.667 10.36 10.36 46.03 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 1.927174 CAATTCTAGGCGGTGTTCTCG 59.073 52.381 0.00 0.00 0.00 4.04
96 97 2.159085 GCTAGTCAATTCTAGGCGGTGT 60.159 50.000 3.99 0.00 38.17 4.16
103 104 3.119291 CGTGGCAGCTAGTCAATTCTAG 58.881 50.000 0.00 0.00 40.01 2.43
206 208 5.437060 ACTTATGACCGAGGTATGCATTTT 58.563 37.500 3.54 0.00 0.00 1.82
286 288 3.327757 AGCTGATAAAAGCCGATGGGATA 59.672 43.478 0.00 0.00 44.68 2.59
288 290 1.490490 AGCTGATAAAAGCCGATGGGA 59.510 47.619 0.00 0.00 44.68 4.37
296 307 4.393062 TGCTACACTGAAGCTGATAAAAGC 59.607 41.667 0.00 0.00 43.88 3.51
307 323 2.871022 GGAGATGCATGCTACACTGAAG 59.129 50.000 20.33 0.00 0.00 3.02
333 349 3.122297 CAATGATCTCTGCCTCTTCGAC 58.878 50.000 0.00 0.00 0.00 4.20
400 433 4.000325 GGCTTCTTCTTCTTCTTCCTCAC 59.000 47.826 0.00 0.00 0.00 3.51
405 438 3.620821 CGGATGGCTTCTTCTTCTTCTTC 59.379 47.826 0.07 0.00 0.00 2.87
406 439 3.261897 TCGGATGGCTTCTTCTTCTTCTT 59.738 43.478 0.07 0.00 0.00 2.52
407 440 2.834549 TCGGATGGCTTCTTCTTCTTCT 59.165 45.455 0.07 0.00 0.00 2.85
439 472 2.812591 GCTCATCATCAAGCATCCGATT 59.187 45.455 0.00 0.00 38.42 3.34
455 493 5.750067 GTCACTTGATTTTGTTTGTGCTCAT 59.250 36.000 0.00 0.00 0.00 2.90
456 494 5.101628 GTCACTTGATTTTGTTTGTGCTCA 58.898 37.500 0.00 0.00 0.00 4.26
457 495 4.204978 CGTCACTTGATTTTGTTTGTGCTC 59.795 41.667 0.00 0.00 0.00 4.26
458 496 4.104776 CGTCACTTGATTTTGTTTGTGCT 58.895 39.130 0.00 0.00 0.00 4.40
459 497 4.101942 TCGTCACTTGATTTTGTTTGTGC 58.898 39.130 0.00 0.00 0.00 4.57
460 498 6.291743 CCAATCGTCACTTGATTTTGTTTGTG 60.292 38.462 0.00 0.00 33.91 3.33
461 499 5.748152 CCAATCGTCACTTGATTTTGTTTGT 59.252 36.000 0.00 0.00 33.91 2.83
462 500 5.976534 TCCAATCGTCACTTGATTTTGTTTG 59.023 36.000 0.00 0.00 33.91 2.93
463 501 6.142818 TCCAATCGTCACTTGATTTTGTTT 57.857 33.333 0.00 0.00 33.91 2.83
464 502 5.766150 TCCAATCGTCACTTGATTTTGTT 57.234 34.783 0.00 0.00 33.91 2.83
516 554 7.402640 GCTTTATCTAATCCAAGTTCAACGAG 58.597 38.462 0.00 0.00 0.00 4.18
528 566 1.613520 GGGCCGGGCTTTATCTAATCC 60.614 57.143 28.80 3.27 0.00 3.01
575 648 1.167851 GACTTTGGCTGCACATGCTA 58.832 50.000 5.31 0.00 42.66 3.49
612 685 0.399075 TCCATGCTGCGATGGATCAT 59.601 50.000 21.81 0.00 45.85 2.45
670 743 7.595130 GGCACCGGATATCTTTGAATTTATTTC 59.405 37.037 9.46 0.00 34.72 2.17
686 760 0.762418 CAATGGGTAGGCACCGGATA 59.238 55.000 9.46 0.00 46.86 2.59
746 820 2.110352 TGCCGTCTCGCGTGATCTA 61.110 57.895 14.59 0.00 39.32 1.98
918 1027 8.765219 CACTCTCGAGACTCAAATAAAAAGAAA 58.235 33.333 12.08 0.00 0.00 2.52
919 1028 8.141909 TCACTCTCGAGACTCAAATAAAAAGAA 58.858 33.333 12.08 0.00 0.00 2.52
920 1029 7.658261 TCACTCTCGAGACTCAAATAAAAAGA 58.342 34.615 12.08 0.00 0.00 2.52
921 1030 7.810282 TCTCACTCTCGAGACTCAAATAAAAAG 59.190 37.037 12.08 0.00 37.12 2.27
922 1031 7.658261 TCTCACTCTCGAGACTCAAATAAAAA 58.342 34.615 12.08 0.00 37.12 1.94
954 1069 1.979693 ACTCAGTCGCCACTCCTCC 60.980 63.158 0.00 0.00 0.00 4.30
963 1078 0.038709 AGCTTCACTCACTCAGTCGC 60.039 55.000 0.00 0.00 30.26 5.19
964 1079 1.727535 CGAGCTTCACTCACTCAGTCG 60.728 57.143 0.00 0.00 46.63 4.18
966 1081 0.600557 CCGAGCTTCACTCACTCAGT 59.399 55.000 0.00 0.00 46.63 3.41
967 1082 0.735632 GCCGAGCTTCACTCACTCAG 60.736 60.000 0.00 0.00 46.63 3.35
968 1083 1.290324 GCCGAGCTTCACTCACTCA 59.710 57.895 0.00 0.00 46.63 3.41
969 1084 1.446966 GGCCGAGCTTCACTCACTC 60.447 63.158 0.00 0.00 46.63 3.51
970 1085 1.882989 GAGGCCGAGCTTCACTCACT 61.883 60.000 0.00 0.00 46.63 3.41
972 1087 1.599606 GAGAGGCCGAGCTTCACTCA 61.600 60.000 0.00 0.00 46.63 3.41
974 1089 1.304879 AGAGAGGCCGAGCTTCACT 60.305 57.895 0.00 6.49 37.11 3.41
976 1091 2.354401 CCAGAGAGGCCGAGCTTCA 61.354 63.158 0.00 0.00 37.11 3.02
978 1093 3.080121 CCCAGAGAGGCCGAGCTT 61.080 66.667 0.00 0.00 35.39 3.74
1098 1214 3.181967 CCTTCGCTGCCGTCTTCG 61.182 66.667 0.00 0.00 35.54 3.79
1101 1217 3.764466 CCTCCTTCGCTGCCGTCT 61.764 66.667 0.00 0.00 35.54 4.18
1149 1265 4.736896 AAGAAGGCCGCGTCGTCC 62.737 66.667 4.92 0.06 0.00 4.79
1305 1421 0.455295 CGCCGTTCTCAGTCTCACTC 60.455 60.000 0.00 0.00 0.00 3.51
1539 1655 0.179094 TGAAGAGCGACACAAACGGT 60.179 50.000 0.00 0.00 43.87 4.83
1773 1889 3.894947 GTCTCCTCGCCCTCGCTC 61.895 72.222 0.00 0.00 35.26 5.03
1818 1934 3.379445 GAGGGTGTCGCGGAAGGA 61.379 66.667 6.13 0.00 0.00 3.36
2135 2251 1.613061 GGACGGAAATGGATGGGGT 59.387 57.895 0.00 0.00 0.00 4.95
2172 2288 2.462456 TCATCTATCGGCCTGAATGC 57.538 50.000 0.00 0.00 0.00 3.56
2181 2297 5.680922 GCAGAGGGATGTTATCATCTATCGG 60.681 48.000 12.41 11.64 46.74 4.18
2574 2706 1.285962 ACTTGACATTGGGGGATGGAG 59.714 52.381 0.00 0.00 0.00 3.86
2578 2710 0.394352 GCGACTTGACATTGGGGGAT 60.394 55.000 0.00 0.00 0.00 3.85
2590 2723 7.870588 ACTTACTTACTAGAAAAGCGACTTG 57.129 36.000 0.00 0.00 0.00 3.16
2613 2746 6.642131 TGAAGTTCAAATGAAATGCTAGCAAC 59.358 34.615 23.54 16.11 35.58 4.17
2639 2780 5.576774 CAGTCGCATTACACACAGAAAGATA 59.423 40.000 0.00 0.00 0.00 1.98
2646 2787 1.726791 GACCAGTCGCATTACACACAG 59.273 52.381 0.00 0.00 0.00 3.66
2670 2811 1.265095 CTTGCACTGTCGCTGTTCAAT 59.735 47.619 0.00 0.00 0.00 2.57
2671 2812 0.657312 CTTGCACTGTCGCTGTTCAA 59.343 50.000 0.00 3.35 0.00 2.69
2704 2845 1.581934 TCTCAGCGACCTTGTGTTTG 58.418 50.000 0.00 0.00 0.00 2.93
2789 2931 0.976641 TTTCTCCGTCCTGCTCATGT 59.023 50.000 0.00 0.00 0.00 3.21
2861 3007 3.169198 GAGCCGGAACAAAGCTCG 58.831 61.111 5.05 0.00 43.18 5.03
2969 3115 2.747855 GGACAGAAAGCCAGCCGG 60.748 66.667 0.00 0.00 0.00 6.13
3179 3352 2.099263 CGGACACTCCACGTCAAGATAT 59.901 50.000 0.87 0.00 35.91 1.63
3186 3364 2.049433 CCACGGACACTCCACGTC 60.049 66.667 0.00 0.00 39.02 4.34
3249 3427 6.629128 TGACACACAATGACACAATCTTTTT 58.371 32.000 0.00 0.00 0.00 1.94
3250 3428 6.206395 TGACACACAATGACACAATCTTTT 57.794 33.333 0.00 0.00 0.00 2.27
3251 3429 5.833406 TGACACACAATGACACAATCTTT 57.167 34.783 0.00 0.00 0.00 2.52
3268 3446 4.046998 CGCGTGCGTGAGTGACAC 62.047 66.667 6.00 0.00 45.11 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.