Multiple sequence alignment - TraesCS3B01G177200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G177200 chr3B 100.000 9337 0 0 1 9337 180896992 180887656 0.000000e+00 17243.0
1 TraesCS3B01G177200 chr3B 90.566 53 4 1 3093 3144 59039307 59039359 1.680000e-07 69.4
2 TraesCS3B01G177200 chr3A 95.532 7475 228 36 875 8323 136576016 136568622 0.000000e+00 11856.0
3 TraesCS3B01G177200 chr3A 88.170 1082 68 23 8305 9337 136568442 136567372 0.000000e+00 1234.0
4 TraesCS3B01G177200 chr3A 88.158 228 22 5 1527 1752 597962530 597962754 5.560000e-67 267.0
5 TraesCS3B01G177200 chr3A 86.325 234 30 2 1527 1759 660265104 660265336 4.330000e-63 254.0
6 TraesCS3B01G177200 chr3A 91.150 113 10 0 764 876 655785348 655785236 4.520000e-33 154.0
7 TraesCS3B01G177200 chr3D 91.085 3982 201 53 4488 8411 126391889 126388004 0.000000e+00 5245.0
8 TraesCS3B01G177200 chr3D 92.568 2301 116 31 1837 4103 126397207 126394928 0.000000e+00 3251.0
9 TraesCS3B01G177200 chr3D 92.257 607 35 6 899 1495 126397937 126397333 0.000000e+00 850.0
10 TraesCS3B01G177200 chr3D 86.194 775 94 11 1 769 126399962 126399195 0.000000e+00 826.0
11 TraesCS3B01G177200 chr3D 93.580 405 23 1 4101 4502 126392336 126391932 1.340000e-167 601.0
12 TraesCS3B01G177200 chr3D 88.462 234 14 9 9115 9337 126387777 126387546 4.300000e-68 270.0
13 TraesCS3B01G177200 chr3D 91.489 94 8 0 8446 8539 126388007 126387914 7.610000e-26 130.0
14 TraesCS3B01G177200 chr2A 89.362 235 19 6 1527 1759 358941215 358941445 3.300000e-74 291.0
15 TraesCS3B01G177200 chr2A 90.265 113 11 0 764 876 51969236 51969348 2.100000e-31 148.0
16 TraesCS3B01G177200 chr7D 87.866 239 25 4 1527 1762 135255391 135255154 2.570000e-70 278.0
17 TraesCS3B01G177200 chr7A 87.500 240 26 4 1527 1763 134457318 134457080 3.320000e-69 274.0
18 TraesCS3B01G177200 chr2B 88.136 236 21 7 1527 1759 272768484 272768253 3.320000e-69 274.0
19 TraesCS3B01G177200 chr2B 95.370 108 5 0 764 871 92500995 92501102 1.250000e-38 172.0
20 TraesCS3B01G177200 chr2B 80.734 109 15 6 2830 2933 800241303 800241196 7.770000e-11 80.5
21 TraesCS3B01G177200 chr4B 88.341 223 19 6 1544 1761 368106272 368106052 2.590000e-65 261.0
22 TraesCS3B01G177200 chr5D 85.950 242 27 6 1527 1763 370938860 370939099 1.560000e-62 252.0
23 TraesCS3B01G177200 chr5D 94.444 108 6 0 764 871 434559386 434559493 5.800000e-37 167.0
24 TraesCS3B01G177200 chr6D 94.444 108 6 0 764 871 15699407 15699514 5.800000e-37 167.0
25 TraesCS3B01G177200 chr6D 93.694 111 7 0 764 874 49275002 49274892 5.800000e-37 167.0
26 TraesCS3B01G177200 chr1A 94.444 108 6 0 764 871 512458695 512458802 5.800000e-37 167.0
27 TraesCS3B01G177200 chr1A 86.441 118 10 4 2769 2880 335028702 335028585 3.540000e-24 124.0
28 TraesCS3B01G177200 chr1A 92.857 42 3 0 9147 9188 191861311 191861270 2.820000e-05 62.1
29 TraesCS3B01G177200 chr7B 92.593 108 8 0 764 871 336472888 336472995 1.260000e-33 156.0
30 TraesCS3B01G177200 chr5B 90.991 111 9 1 764 874 323857121 323857012 2.100000e-31 148.0
31 TraesCS3B01G177200 chr1D 87.850 107 8 3 2763 2864 267794481 267794587 4.580000e-23 121.0
32 TraesCS3B01G177200 chr1D 78.621 145 23 8 2795 2933 223430692 223430834 1.290000e-13 89.8
33 TraesCS3B01G177200 chr1B 85.593 118 11 4 2769 2880 345320607 345320490 1.650000e-22 119.0
34 TraesCS3B01G177200 chr5A 82.883 111 13 5 2769 2873 659866463 659866573 2.780000e-15 95.3
35 TraesCS3B01G177200 chr4A 100.000 33 0 0 2985 3017 96315913 96315945 2.820000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G177200 chr3B 180887656 180896992 9336 True 17243.000000 17243 100.000 1 9337 1 chr3B.!!$R1 9336
1 TraesCS3B01G177200 chr3A 136567372 136576016 8644 True 6545.000000 11856 91.851 875 9337 2 chr3A.!!$R2 8462
2 TraesCS3B01G177200 chr3D 126387546 126399962 12416 True 1596.142857 5245 90.805 1 9337 7 chr3D.!!$R1 9336

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 505 0.031043 TGTTCCACGTCGTCGATTGT 59.969 50.000 9.47 0.0 40.62 2.71 F
854 860 0.111639 ACCCGTGGTGCATAAAAGGT 59.888 50.000 0.00 0.0 32.98 3.50 F
856 862 0.446222 CCGTGGTGCATAAAAGGTCG 59.554 55.000 0.00 0.0 0.00 4.79 F
1361 2610 0.452184 TTCCACGCGATCTCAGTCTC 59.548 55.000 15.93 0.0 0.00 3.36 F
2919 4229 0.101759 TAGTTGCGGCCTACATCGAC 59.898 55.000 0.00 0.0 0.00 4.20 F
3334 4648 0.243636 GTTCCCCCATTTTGCTGACG 59.756 55.000 0.00 0.0 0.00 4.35 F
3546 4860 0.532115 CAGCCCATGCCTTTGTAACC 59.468 55.000 0.00 0.0 38.69 2.85 F
3648 4962 1.202651 AGTCACACTAACACAGGTGCC 60.203 52.381 0.00 0.0 36.99 5.01 F
4350 8262 2.512692 AATACATTGGCACTGGAGCA 57.487 45.000 9.77 0.0 35.83 4.26 F
4665 8634 3.118482 AGTCAGTTCGAATGAGCATCCAT 60.118 43.478 0.00 0.0 0.00 3.41 F
6051 10036 3.197766 CCCTAACCTGAGCATAGTCACAA 59.802 47.826 0.00 0.0 0.00 3.33 F
6869 10861 6.048509 GGTGAAGTTTGTGGTTGAAATCATT 58.951 36.000 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 2705 0.036952 ACTGCACCTGGATTGACTCG 60.037 55.000 0.00 0.00 0.00 4.18 R
1994 3271 1.537202 GACCTGAGATGTGCACAAACC 59.463 52.381 25.72 15.69 0.00 3.27 R
2779 4087 2.028112 TGACGGAGAAGGTTGAATCCAG 60.028 50.000 0.00 0.00 0.00 3.86 R
3350 4664 0.820226 TTGAGCCCTGAGATGAGACG 59.180 55.000 0.00 0.00 0.00 4.18 R
4332 8244 1.409241 CCTGCTCCAGTGCCAATGTAT 60.409 52.381 0.00 0.00 0.00 2.29 R
4706 8675 2.875296 TGTGCATTCCAGTTAAAGCCT 58.125 42.857 0.00 0.00 0.00 4.58 R
5344 9314 1.256812 CTTCAATGTCCCACCAACCC 58.743 55.000 0.00 0.00 0.00 4.11 R
5660 9632 6.216662 TCCTAAAGATTAGTTCCATTGTCCCA 59.783 38.462 0.00 0.00 0.00 4.37 R
5781 9761 4.023963 GCTTCCAAAACAACCTGTCTAGAC 60.024 45.833 16.32 16.32 0.00 2.59 R
6659 10648 4.274602 TGGTTTAACGGACAATAGCAGA 57.725 40.909 0.00 0.00 0.00 4.26 R
6995 11014 1.147191 TCAGTAGGCCGGATGATAGGT 59.853 52.381 5.05 0.00 0.00 3.08 R
8740 12977 0.179166 GCGTGTGCATGGTTATGGTG 60.179 55.000 0.00 0.00 42.15 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 122 3.641648 CACAAACATGTTGTGGATGACC 58.358 45.455 22.77 0.00 44.33 4.02
141 143 1.153628 GGAGTTGACGGGATCACGG 60.154 63.158 23.42 3.61 36.92 4.94
152 154 4.820744 ATCACGGGGCACATGGGC 62.821 66.667 12.85 12.85 42.44 5.36
181 183 3.637273 GTGGAGGTGCCCGTCCTT 61.637 66.667 9.36 0.00 44.36 3.36
184 186 2.266055 GAGGTGCCCGTCCTTGAG 59.734 66.667 0.00 0.00 35.20 3.02
205 208 2.990479 CCACCCCTTCTTCCTCGG 59.010 66.667 0.00 0.00 0.00 4.63
210 213 2.689034 CCTTCTTCCTCGGCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
234 237 3.774702 GCGACTTTGTCCGTCCGC 61.775 66.667 0.00 0.00 0.00 5.54
235 238 2.049433 CGACTTTGTCCGTCCGCT 60.049 61.111 0.00 0.00 0.00 5.52
239 242 1.301401 CTTTGTCCGTCCGCTGGAA 60.301 57.895 0.00 0.00 37.23 3.53
252 255 1.538876 CTGGAAGGGGTGGAGGACA 60.539 63.158 0.00 0.00 0.00 4.02
310 313 1.397693 CGCTGCGAAAGAAGTTGACAG 60.398 52.381 18.66 0.00 39.71 3.51
312 315 0.944386 TGCGAAAGAAGTTGACAGGC 59.056 50.000 0.00 0.00 0.00 4.85
356 360 2.034221 GGTTCCCTTGCCGCTTCT 59.966 61.111 0.00 0.00 0.00 2.85
357 361 1.603739 GGTTCCCTTGCCGCTTCTT 60.604 57.895 0.00 0.00 0.00 2.52
389 393 2.591311 GCGAAACGAGTTGGCGTGA 61.591 57.895 11.23 0.00 44.86 4.35
395 399 3.041940 GAGTTGGCGTGACGGTGG 61.042 66.667 7.25 0.00 0.00 4.61
397 401 4.612412 GTTGGCGTGACGGTGGGA 62.612 66.667 7.25 0.00 0.00 4.37
405 409 1.002624 TGACGGTGGGAAAGATGGC 60.003 57.895 0.00 0.00 0.00 4.40
409 413 2.361104 GTGGGAAAGATGGCCGCA 60.361 61.111 0.00 0.00 0.00 5.69
427 431 4.292178 GGAGGCGCGGAGGATGAG 62.292 72.222 8.83 0.00 0.00 2.90
428 432 4.959596 GAGGCGCGGAGGATGAGC 62.960 72.222 8.83 0.00 0.00 4.26
435 439 3.622514 GGAGGATGAGCCGACACT 58.377 61.111 0.00 0.00 43.43 3.55
440 444 2.101582 GAGGATGAGCCGACACTAATGT 59.898 50.000 0.00 0.00 43.71 2.71
441 445 2.159043 AGGATGAGCCGACACTAATGTG 60.159 50.000 0.00 0.00 45.21 3.21
451 455 1.463674 CACTAATGTGGGGAGGCAAC 58.536 55.000 0.00 0.00 40.33 4.17
461 465 0.532115 GGGAGGCAACGCATGAAATT 59.468 50.000 0.00 0.00 46.39 1.82
470 474 3.062500 GCATGAAATTCGCCGGCCA 62.063 57.895 23.46 12.56 0.00 5.36
471 475 1.064621 CATGAAATTCGCCGGCCAG 59.935 57.895 23.46 8.15 0.00 4.85
473 477 3.439540 GAAATTCGCCGGCCAGCA 61.440 61.111 23.46 1.75 0.00 4.41
489 493 3.357079 CAGCTGCCGGTGTTCCAC 61.357 66.667 0.00 0.00 34.04 4.02
492 496 3.041940 CTGCCGGTGTTCCACGTC 61.042 66.667 1.90 0.00 34.83 4.34
494 498 4.955774 GCCGGTGTTCCACGTCGT 62.956 66.667 1.90 0.00 34.83 4.34
501 505 0.031043 TGTTCCACGTCGTCGATTGT 59.969 50.000 9.47 0.00 40.62 2.71
507 511 1.809619 CGTCGTCGATTGTGGGCAT 60.810 57.895 0.00 0.00 39.71 4.40
509 513 1.209128 GTCGTCGATTGTGGGCATAG 58.791 55.000 0.00 0.00 0.00 2.23
515 519 0.179045 GATTGTGGGCATAGCGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
521 525 1.395826 GGGCATAGCGAGGTGAGACT 61.396 60.000 0.00 0.00 0.00 3.24
523 527 1.565305 GCATAGCGAGGTGAGACTTG 58.435 55.000 0.00 0.00 0.00 3.16
527 531 1.301716 GCGAGGTGAGACTTGGCAA 60.302 57.895 0.00 0.00 0.00 4.52
579 583 2.116556 GGGGCGGGGTCAAAGAAA 59.883 61.111 0.00 0.00 0.00 2.52
582 586 0.610785 GGGCGGGGTCAAAGAAATGA 60.611 55.000 0.00 0.00 0.00 2.57
594 598 4.217550 TCAAAGAAATGACGGAAATGTCCC 59.782 41.667 0.00 0.00 41.44 4.46
597 601 2.024176 AATGACGGAAATGTCCCTCG 57.976 50.000 0.00 0.00 41.44 4.63
599 603 1.079405 GACGGAAATGTCCCTCGCA 60.079 57.895 0.00 0.00 41.44 5.10
601 605 2.106683 CGGAAATGTCCCTCGCACC 61.107 63.158 0.00 0.00 41.44 5.01
604 609 0.321653 GAAATGTCCCTCGCACCAGT 60.322 55.000 0.00 0.00 0.00 4.00
618 623 1.008424 CCAGTCGCGCGTCTGATAT 60.008 57.895 43.41 17.70 34.14 1.63
627 632 3.575630 GCGCGTCTGATATAGGAAATCA 58.424 45.455 8.43 0.00 32.56 2.57
637 642 7.568738 TCTGATATAGGAAATCACAAAGGGAGA 59.431 37.037 0.00 0.00 30.38 3.71
638 643 8.101309 TGATATAGGAAATCACAAAGGGAGAA 57.899 34.615 0.00 0.00 0.00 2.87
689 695 4.633175 GAAATTTACCGCTTCCCCAAAAA 58.367 39.130 0.00 0.00 0.00 1.94
691 697 4.901197 ATTTACCGCTTCCCCAAAAATT 57.099 36.364 0.00 0.00 0.00 1.82
763 769 2.353579 CGGTGGTTATTTTAGCGGAAGG 59.646 50.000 0.00 0.00 0.00 3.46
769 775 2.019948 ATTTTAGCGGAAGGGACGAC 57.980 50.000 0.00 0.00 0.00 4.34
770 776 0.680618 TTTTAGCGGAAGGGACGACA 59.319 50.000 0.00 0.00 0.00 4.35
771 777 0.899720 TTTAGCGGAAGGGACGACAT 59.100 50.000 0.00 0.00 0.00 3.06
772 778 1.766494 TTAGCGGAAGGGACGACATA 58.234 50.000 0.00 0.00 0.00 2.29
773 779 1.315690 TAGCGGAAGGGACGACATAG 58.684 55.000 0.00 0.00 0.00 2.23
774 780 1.067582 GCGGAAGGGACGACATAGG 59.932 63.158 0.00 0.00 0.00 2.57
775 781 1.067582 CGGAAGGGACGACATAGGC 59.932 63.158 0.00 0.00 0.00 3.93
776 782 1.392710 CGGAAGGGACGACATAGGCT 61.393 60.000 0.00 0.00 0.00 4.58
777 783 1.700955 GGAAGGGACGACATAGGCTA 58.299 55.000 0.00 0.00 0.00 3.93
778 784 2.037144 GGAAGGGACGACATAGGCTAA 58.963 52.381 0.00 0.00 0.00 3.09
779 785 2.633481 GGAAGGGACGACATAGGCTAAT 59.367 50.000 0.00 0.00 0.00 1.73
780 786 3.830755 GGAAGGGACGACATAGGCTAATA 59.169 47.826 0.00 0.00 0.00 0.98
781 787 4.282703 GGAAGGGACGACATAGGCTAATAA 59.717 45.833 0.00 0.00 0.00 1.40
782 788 5.046520 GGAAGGGACGACATAGGCTAATAAT 60.047 44.000 0.00 0.00 0.00 1.28
783 789 5.662674 AGGGACGACATAGGCTAATAATC 57.337 43.478 0.00 0.00 0.00 1.75
784 790 4.158025 AGGGACGACATAGGCTAATAATCG 59.842 45.833 14.57 14.57 0.00 3.34
785 791 4.082354 GGGACGACATAGGCTAATAATCGT 60.082 45.833 19.13 19.13 43.42 3.73
786 792 5.467705 GGACGACATAGGCTAATAATCGTT 58.532 41.667 19.68 9.39 41.05 3.85
787 793 5.345202 GGACGACATAGGCTAATAATCGTTG 59.655 44.000 19.68 6.58 41.05 4.10
788 794 5.227908 ACGACATAGGCTAATAATCGTTGG 58.772 41.667 15.53 1.63 38.06 3.77
789 795 5.010314 ACGACATAGGCTAATAATCGTTGGA 59.990 40.000 15.53 0.00 38.06 3.53
790 796 6.100004 CGACATAGGCTAATAATCGTTGGAT 58.900 40.000 0.00 0.00 0.00 3.41
791 797 6.590292 CGACATAGGCTAATAATCGTTGGATT 59.410 38.462 0.00 0.00 44.81 3.01
792 798 7.411912 CGACATAGGCTAATAATCGTTGGATTG 60.412 40.741 0.00 0.00 42.72 2.67
793 799 7.450074 ACATAGGCTAATAATCGTTGGATTGA 58.550 34.615 0.00 0.00 42.72 2.57
794 800 7.936847 ACATAGGCTAATAATCGTTGGATTGAA 59.063 33.333 0.00 0.00 42.72 2.69
795 801 8.950210 CATAGGCTAATAATCGTTGGATTGAAT 58.050 33.333 0.00 0.00 42.72 2.57
796 802 7.440523 AGGCTAATAATCGTTGGATTGAATC 57.559 36.000 0.00 0.00 42.72 2.52
811 817 6.118852 GGATTGAATCCCTCCATATCTAAGC 58.881 44.000 13.26 0.00 43.88 3.09
812 818 6.296662 GGATTGAATCCCTCCATATCTAAGCA 60.297 42.308 13.26 0.00 43.88 3.91
813 819 6.514012 TTGAATCCCTCCATATCTAAGCAA 57.486 37.500 0.00 0.00 0.00 3.91
814 820 5.869579 TGAATCCCTCCATATCTAAGCAAC 58.130 41.667 0.00 0.00 0.00 4.17
815 821 4.543590 ATCCCTCCATATCTAAGCAACG 57.456 45.455 0.00 0.00 0.00 4.10
816 822 3.305720 TCCCTCCATATCTAAGCAACGT 58.694 45.455 0.00 0.00 0.00 3.99
817 823 3.321111 TCCCTCCATATCTAAGCAACGTC 59.679 47.826 0.00 0.00 0.00 4.34
818 824 3.069586 CCCTCCATATCTAAGCAACGTCA 59.930 47.826 0.00 0.00 0.00 4.35
819 825 4.302455 CCTCCATATCTAAGCAACGTCAG 58.698 47.826 0.00 0.00 0.00 3.51
820 826 4.038042 CCTCCATATCTAAGCAACGTCAGA 59.962 45.833 0.00 0.00 0.00 3.27
821 827 5.279206 CCTCCATATCTAAGCAACGTCAGAT 60.279 44.000 0.00 0.00 0.00 2.90
822 828 5.773575 TCCATATCTAAGCAACGTCAGATC 58.226 41.667 0.00 0.00 0.00 2.75
823 829 4.926238 CCATATCTAAGCAACGTCAGATCC 59.074 45.833 0.00 0.00 0.00 3.36
824 830 5.279206 CCATATCTAAGCAACGTCAGATCCT 60.279 44.000 0.00 0.00 0.00 3.24
825 831 6.071896 CCATATCTAAGCAACGTCAGATCCTA 60.072 42.308 0.00 0.00 0.00 2.94
826 832 4.634184 TCTAAGCAACGTCAGATCCTAC 57.366 45.455 0.00 0.00 0.00 3.18
827 833 2.674796 AAGCAACGTCAGATCCTACC 57.325 50.000 0.00 0.00 0.00 3.18
828 834 1.557099 AGCAACGTCAGATCCTACCA 58.443 50.000 0.00 0.00 0.00 3.25
829 835 2.111384 AGCAACGTCAGATCCTACCAT 58.889 47.619 0.00 0.00 0.00 3.55
830 836 2.101582 AGCAACGTCAGATCCTACCATC 59.898 50.000 0.00 0.00 0.00 3.51
831 837 2.732366 CAACGTCAGATCCTACCATCG 58.268 52.381 0.00 0.00 0.00 3.84
832 838 2.054232 ACGTCAGATCCTACCATCGT 57.946 50.000 0.00 0.00 0.00 3.73
833 839 1.948145 ACGTCAGATCCTACCATCGTC 59.052 52.381 0.00 0.00 0.00 4.20
834 840 1.267261 CGTCAGATCCTACCATCGTCC 59.733 57.143 0.00 0.00 0.00 4.79
835 841 2.307768 GTCAGATCCTACCATCGTCCA 58.692 52.381 0.00 0.00 0.00 4.02
836 842 2.034812 GTCAGATCCTACCATCGTCCAC 59.965 54.545 0.00 0.00 0.00 4.02
837 843 1.341531 CAGATCCTACCATCGTCCACC 59.658 57.143 0.00 0.00 0.00 4.61
838 844 0.680061 GATCCTACCATCGTCCACCC 59.320 60.000 0.00 0.00 0.00 4.61
839 845 1.113517 ATCCTACCATCGTCCACCCG 61.114 60.000 0.00 0.00 0.00 5.28
840 846 2.056223 CCTACCATCGTCCACCCGT 61.056 63.158 0.00 0.00 0.00 5.28
841 847 1.141019 CTACCATCGTCCACCCGTG 59.859 63.158 0.00 0.00 0.00 4.94
853 859 2.955609 ACCCGTGGTGCATAAAAGG 58.044 52.632 0.00 0.00 32.98 3.11
854 860 0.111639 ACCCGTGGTGCATAAAAGGT 59.888 50.000 0.00 0.00 32.98 3.50
855 861 0.808755 CCCGTGGTGCATAAAAGGTC 59.191 55.000 0.00 0.00 0.00 3.85
856 862 0.446222 CCGTGGTGCATAAAAGGTCG 59.554 55.000 0.00 0.00 0.00 4.79
857 863 1.153353 CGTGGTGCATAAAAGGTCGT 58.847 50.000 0.00 0.00 0.00 4.34
858 864 1.136085 CGTGGTGCATAAAAGGTCGTG 60.136 52.381 0.00 0.00 0.00 4.35
859 865 1.877443 GTGGTGCATAAAAGGTCGTGT 59.123 47.619 0.00 0.00 0.00 4.49
860 866 1.876799 TGGTGCATAAAAGGTCGTGTG 59.123 47.619 0.00 0.00 0.00 3.82
861 867 1.401018 GGTGCATAAAAGGTCGTGTGC 60.401 52.381 0.00 0.00 0.00 4.57
862 868 0.515127 TGCATAAAAGGTCGTGTGCG 59.485 50.000 0.00 0.00 35.46 5.34
863 869 0.793104 GCATAAAAGGTCGTGTGCGC 60.793 55.000 0.00 0.00 38.14 6.09
864 870 0.515127 CATAAAAGGTCGTGTGCGCA 59.485 50.000 5.66 5.66 38.14 6.09
865 871 0.796312 ATAAAAGGTCGTGTGCGCAG 59.204 50.000 12.22 0.00 38.14 5.18
1092 2335 2.049156 GCCTTGCTTTTCACCGCC 60.049 61.111 0.00 0.00 0.00 6.13
1110 2353 3.597728 GCCGCCTACTCTCCTCCG 61.598 72.222 0.00 0.00 0.00 4.63
1225 2474 2.210116 GCTTCGTTCCAACTCAAGTGA 58.790 47.619 0.00 0.00 0.00 3.41
1228 2477 3.536956 TCGTTCCAACTCAAGTGACTT 57.463 42.857 0.00 0.00 0.00 3.01
1331 2580 1.481871 CAACTTCCTCCCGCTAGGTA 58.518 55.000 0.00 0.00 37.91 3.08
1346 2595 4.553330 CTAGGTAAGCTTCCTGTTTCCA 57.447 45.455 21.03 5.60 36.60 3.53
1359 2608 0.992802 GTTTCCACGCGATCTCAGTC 59.007 55.000 15.93 0.00 0.00 3.51
1361 2610 0.452184 TTCCACGCGATCTCAGTCTC 59.548 55.000 15.93 0.00 0.00 3.36
1382 2631 5.127194 TCTCGTTCCTAGTTGCATACTCAAT 59.873 40.000 5.04 0.00 38.33 2.57
1386 2635 6.258727 CGTTCCTAGTTGCATACTCAATTGAT 59.741 38.462 8.96 2.32 38.33 2.57
1397 2646 8.738106 TGCATACTCAATTGATGTGTAATTTCA 58.262 29.630 8.96 3.30 40.34 2.69
1398 2647 9.740239 GCATACTCAATTGATGTGTAATTTCAT 57.260 29.630 8.96 0.00 40.34 2.57
1465 2714 4.849111 GTGAATTCTCACCGAGTCAATC 57.151 45.455 7.05 0.00 45.41 2.67
1484 2733 2.942804 TCCAGGTGCAGTTCATTTTCA 58.057 42.857 0.00 0.00 0.00 2.69
1487 2736 4.161189 TCCAGGTGCAGTTCATTTTCAAAA 59.839 37.500 0.00 0.00 0.00 2.44
1488 2737 4.874966 CCAGGTGCAGTTCATTTTCAAAAA 59.125 37.500 0.00 0.00 0.00 1.94
1558 2807 6.147821 CCATCTACTAATACAAGGCCATTTCG 59.852 42.308 5.01 0.00 0.00 3.46
1641 2890 4.967084 AAATATGCCATTGGATGCACAT 57.033 36.364 6.95 2.48 40.88 3.21
1656 2905 6.424509 TGGATGCACATTTGAATGAACTTTTC 59.575 34.615 10.48 0.94 39.67 2.29
1657 2906 6.424509 GGATGCACATTTGAATGAACTTTTCA 59.575 34.615 10.48 0.00 45.01 2.69
1800 3051 6.710295 TGTGTAACTTTGCTTGAGTATGATGT 59.290 34.615 0.00 0.00 38.04 3.06
1850 3127 4.192317 GGCGTAGATTTGGATGTTTCTCT 58.808 43.478 0.00 0.00 0.00 3.10
1909 3186 8.458573 TTGTTTGAATATGAACCAAGTACTGT 57.541 30.769 0.00 0.00 0.00 3.55
1950 3227 7.448748 AAGGTCAAGGTGTACAAATTGTATC 57.551 36.000 9.22 6.03 35.05 2.24
1994 3271 5.109210 TGCTTTGGAGACGTTATCACTATG 58.891 41.667 0.00 0.00 0.00 2.23
2015 3292 1.195448 GTTTGTGCACATCTCAGGTCG 59.805 52.381 22.39 0.00 0.00 4.79
2027 3304 4.931661 TCTCAGGTCGTGAACTTAAGTT 57.068 40.909 20.67 20.67 41.64 2.66
2028 3305 5.272283 TCTCAGGTCGTGAACTTAAGTTT 57.728 39.130 21.40 6.19 38.56 2.66
2134 3411 8.416329 GCTCACAAATATTCCCTGTCAAAATAT 58.584 33.333 0.00 0.00 0.00 1.28
2348 3626 3.845178 TGCACTTGTTGATCTACTACGG 58.155 45.455 8.74 0.00 0.00 4.02
2426 3708 7.781324 ACTCAGTGAAAAATTGTATTCCCAT 57.219 32.000 0.00 0.00 0.00 4.00
2446 3728 6.819146 TCCCATGTTTCAAAAACCTACAAAAC 59.181 34.615 0.48 0.00 0.00 2.43
2542 3842 8.408043 AGAAAATGTGAAAGATACAATGACCA 57.592 30.769 0.00 0.00 0.00 4.02
2767 4075 5.801531 TGTGGATGTAACTGTGTCTACTT 57.198 39.130 0.00 0.00 0.00 2.24
2824 4132 1.562008 TGGACTTTGGTCAACTGGTCA 59.438 47.619 0.00 0.00 43.77 4.02
2886 4195 2.203280 CAAGACCCGGCCAACACA 60.203 61.111 2.24 0.00 0.00 3.72
2891 4200 0.743345 GACCCGGCCAACACACTATC 60.743 60.000 2.24 0.00 0.00 2.08
2919 4229 0.101759 TAGTTGCGGCCTACATCGAC 59.898 55.000 0.00 0.00 0.00 4.20
2947 4257 0.389426 TAAGGCTTGAGGAACGACGC 60.389 55.000 10.69 0.00 0.00 5.19
2961 4271 4.379813 GGAACGACGCGAGGGAATATATTA 60.380 45.833 15.93 0.00 0.00 0.98
2981 4291 3.990959 ACCCTCTCTTTTCCATCAGTC 57.009 47.619 0.00 0.00 0.00 3.51
3020 4331 1.648504 GCTGGAGCATGCAATTTTCC 58.351 50.000 21.98 17.66 34.45 3.13
3156 4468 1.606668 TGGTCGGTGCATGAAACTTTC 59.393 47.619 0.00 0.00 0.00 2.62
3230 4544 8.677148 TTTACTCCCTGCATTATGATCTTAAC 57.323 34.615 3.35 0.00 0.00 2.01
3297 4611 2.173519 CAGTCCAATGTTGCCATTCCT 58.826 47.619 0.00 0.00 39.28 3.36
3334 4648 0.243636 GTTCCCCCATTTTGCTGACG 59.756 55.000 0.00 0.00 0.00 4.35
3350 4664 4.079710 GCTGACGTCTTTTATTGTTACGC 58.920 43.478 17.92 0.00 37.07 4.42
3546 4860 0.532115 CAGCCCATGCCTTTGTAACC 59.468 55.000 0.00 0.00 38.69 2.85
3610 4924 1.655099 GCTATGTTTTGTTGCATGCCG 59.345 47.619 16.68 0.00 0.00 5.69
3648 4962 1.202651 AGTCACACTAACACAGGTGCC 60.203 52.381 0.00 0.00 36.99 5.01
3838 5152 8.940768 ATGTTTGTAAGCACAACTTTGTTATT 57.059 26.923 0.00 0.00 44.28 1.40
4059 5373 5.503662 TGTCGTCTTGTACTCTTGTGTAA 57.496 39.130 0.00 0.00 0.00 2.41
4309 8221 7.982371 GATCATGTTTCTTTGATCATGAACC 57.018 36.000 0.00 5.67 45.83 3.62
4332 8244 4.338118 CAGGTACCTTTGTCTCTTGCAAAA 59.662 41.667 13.15 0.00 35.71 2.44
4350 8262 2.512692 AATACATTGGCACTGGAGCA 57.487 45.000 9.77 0.00 35.83 4.26
4392 8304 8.606830 ACTAAGGAATTATTCAGAAGTCTGGTT 58.393 33.333 8.42 0.00 43.91 3.67
4606 8575 8.691661 AACTGTAACTGTATCAGTGGAAAAAT 57.308 30.769 15.06 0.44 44.62 1.82
4607 8576 8.691661 ACTGTAACTGTATCAGTGGAAAAATT 57.308 30.769 14.05 0.00 44.62 1.82
4623 8592 7.890717 GTGGAAAAATTTTATATGACAAACGCG 59.109 33.333 3.53 3.53 0.00 6.01
4665 8634 3.118482 AGTCAGTTCGAATGAGCATCCAT 60.118 43.478 0.00 0.00 0.00 3.41
4672 8641 4.959723 TCGAATGAGCATCCATGTGAATA 58.040 39.130 0.00 0.00 0.00 1.75
4817 8786 8.807118 TCATCTCCTTTAGGTGCATAGTATTAG 58.193 37.037 0.00 0.00 36.15 1.73
4850 8819 6.636447 TGCATTTTGTATTTCAGTCAGTTTCG 59.364 34.615 0.00 0.00 0.00 3.46
4973 8942 6.291377 TCTAGTGCAAGCCTGAAATAATAGG 58.709 40.000 0.00 0.00 37.14 2.57
5104 9073 5.313712 TGGAGTCCTTGTTTGTATTCCTTC 58.686 41.667 11.33 0.00 0.00 3.46
5279 9249 7.956420 TGTATTAGTTTGTCCTGTTGTACAG 57.044 36.000 0.00 0.00 45.53 2.74
5344 9314 6.194967 ACTTAAGATAATTGGAAAGGGGTGG 58.805 40.000 10.09 0.00 0.00 4.61
5356 9326 4.295199 GGGTGGGGTTGGTGGGAC 62.295 72.222 0.00 0.00 0.00 4.46
5447 9417 8.143835 GCAAGCTGGGAAATGTATAAATGTAAT 58.856 33.333 0.00 0.00 0.00 1.89
5598 9570 5.408909 GTCATACAGATCAATGCATGAGAGG 59.591 44.000 0.00 0.00 42.53 3.69
5660 9632 8.749354 AGAGAAAACAGAGTAAAACACCAAATT 58.251 29.630 0.00 0.00 0.00 1.82
5696 9668 9.988815 GAACTAATCTTTAGGAGAATGCTATGA 57.011 33.333 0.00 0.00 39.37 2.15
6051 10036 3.197766 CCCTAACCTGAGCATAGTCACAA 59.802 47.826 0.00 0.00 0.00 3.33
6808 10800 8.105097 TCTCAGCATCTGTAGAATACTGTATC 57.895 38.462 0.00 0.00 43.54 2.24
6869 10861 6.048509 GGTGAAGTTTGTGGTTGAAATCATT 58.951 36.000 0.00 0.00 0.00 2.57
6870 10862 6.200854 GGTGAAGTTTGTGGTTGAAATCATTC 59.799 38.462 0.00 0.00 36.04 2.67
6871 10863 6.200854 GTGAAGTTTGTGGTTGAAATCATTCC 59.799 38.462 0.00 0.00 34.49 3.01
6874 10866 7.537596 AGTTTGTGGTTGAAATCATTCCATA 57.462 32.000 9.80 6.05 34.55 2.74
6878 10870 6.923012 TGTGGTTGAAATCATTCCATACTTG 58.077 36.000 9.80 0.00 34.55 3.16
7015 11034 1.147191 ACCTATCATCCGGCCTACTGA 59.853 52.381 0.00 0.21 0.00 3.41
7050 11069 6.196353 CACAATTTGTTCACCTTTACTCAACG 59.804 38.462 0.00 0.00 0.00 4.10
7400 11425 2.159379 GCGTTTTCTGCTTTGGATAGGG 60.159 50.000 0.00 0.00 0.00 3.53
7617 11642 3.368220 CCAGTCAGGTCAGTCTTCATCAG 60.368 52.174 0.00 0.00 0.00 2.90
7641 11666 5.445540 GCAGCAGCAGAATAAAAATTTGAGC 60.446 40.000 0.00 0.00 41.58 4.26
7667 11692 1.525619 GCAGTTGACACCACTAACGTC 59.474 52.381 0.00 0.00 0.00 4.34
7892 11926 0.718343 GCAGAGTCGATGAAGTGTGC 59.282 55.000 0.00 0.00 32.54 4.57
8029 12063 5.029807 TCAGTGTGACACCAAATTCTGTA 57.970 39.130 12.81 0.00 34.49 2.74
8130 12164 1.904990 GAGGTGCTCTTGGGGAGTCC 61.905 65.000 0.00 0.00 43.62 3.85
8184 12218 5.323900 CACATTAATCAGGTACTTGTTGCG 58.676 41.667 4.75 0.00 34.60 4.85
8226 12260 4.488126 TGCACTTGCTTTCTGTCAATAC 57.512 40.909 2.33 0.00 42.66 1.89
8227 12261 4.136796 TGCACTTGCTTTCTGTCAATACT 58.863 39.130 2.33 0.00 42.66 2.12
8254 12288 8.371571 AGGAGTCATTGCTGATGTATCATATA 57.628 34.615 0.00 0.00 36.02 0.86
8380 12612 1.134670 AGTGCAAAGATCTACCCGAGC 60.135 52.381 0.00 0.00 0.00 5.03
8421 12653 7.124147 CCATGGTGAAATAGGTTAATTGGACTT 59.876 37.037 2.57 0.00 0.00 3.01
8428 12660 8.803397 AAATAGGTTAATTGGACTTGGTAGAC 57.197 34.615 0.00 0.00 0.00 2.59
8448 12680 2.639286 CTTGGTGCACGACAAGGC 59.361 61.111 21.51 4.38 40.20 4.35
8453 12685 4.641645 TGCACGACAAGGCCAGGG 62.642 66.667 5.01 0.00 0.00 4.45
8518 12750 1.483415 TGGAGTAGGATAACGCCAACC 59.517 52.381 0.00 0.00 44.95 3.77
8523 12755 0.916086 AGGATAACGCCAACCATCCA 59.084 50.000 2.56 0.00 39.59 3.41
8541 12773 1.465689 CCAAACCATGAACATCGTCGC 60.466 52.381 0.00 0.00 0.00 5.19
8613 12850 3.501828 TGCTACTGTAATGTGTTGGCTTG 59.498 43.478 0.00 0.00 0.00 4.01
8614 12851 3.670627 GCTACTGTAATGTGTTGGCTTGC 60.671 47.826 0.00 0.00 0.00 4.01
8619 12856 2.228138 AATGTGTTGGCTTGCTTGTG 57.772 45.000 0.00 0.00 0.00 3.33
8626 12863 3.181491 TGTTGGCTTGCTTGTGTAGTTTC 60.181 43.478 0.00 0.00 0.00 2.78
8630 12867 3.550842 GGCTTGCTTGTGTAGTTTCAAGG 60.551 47.826 6.96 0.00 40.64 3.61
8631 12868 3.066760 GCTTGCTTGTGTAGTTTCAAGGT 59.933 43.478 6.96 0.00 40.64 3.50
8634 12871 4.523083 TGCTTGTGTAGTTTCAAGGTTCT 58.477 39.130 6.96 0.00 40.64 3.01
8636 12873 6.296026 TGCTTGTGTAGTTTCAAGGTTCTAT 58.704 36.000 6.96 0.00 40.64 1.98
8641 12878 7.152645 TGTGTAGTTTCAAGGTTCTATGAGAC 58.847 38.462 0.00 0.00 32.48 3.36
8643 12880 7.656137 GTGTAGTTTCAAGGTTCTATGAGACAA 59.344 37.037 0.00 0.00 34.19 3.18
8654 12891 7.121315 AGGTTCTATGAGACAATTGCCTAAAAC 59.879 37.037 5.05 0.00 0.00 2.43
8673 12910 9.908152 CCTAAAACTTCCAACTTATAAAACTGG 57.092 33.333 2.15 2.15 0.00 4.00
8705 12942 5.791141 ACTTTTCACCCCCTATCTAGTCTTT 59.209 40.000 0.00 0.00 0.00 2.52
8706 12943 6.964086 ACTTTTCACCCCCTATCTAGTCTTTA 59.036 38.462 0.00 0.00 0.00 1.85
8718 12955 9.959749 CCTATCTAGTCTTTAAACACTCAGATC 57.040 37.037 13.50 0.00 0.00 2.75
8725 12962 7.924412 AGTCTTTAAACACTCAGATCGTAACAA 59.076 33.333 0.00 0.00 0.00 2.83
8740 12977 5.209240 TCGTAACAATTGCTAACAAACAGC 58.791 37.500 5.05 0.00 39.77 4.40
8780 13017 3.871074 GCCGGTTAAACCTACATGTTCCT 60.871 47.826 2.30 0.00 35.66 3.36
8806 13043 2.832129 AGGCGAAGAGGTGATTGTCTAA 59.168 45.455 0.00 0.00 0.00 2.10
8864 13101 0.731417 GCAGCTCCACTATTGTGCAG 59.269 55.000 1.35 0.00 42.54 4.41
8865 13102 1.676916 GCAGCTCCACTATTGTGCAGA 60.677 52.381 2.14 0.00 42.54 4.26
8866 13103 2.005451 CAGCTCCACTATTGTGCAGAC 58.995 52.381 2.14 0.00 42.54 3.51
8867 13104 1.625315 AGCTCCACTATTGTGCAGACA 59.375 47.619 2.14 0.00 42.54 3.41
8868 13105 2.238144 AGCTCCACTATTGTGCAGACAT 59.762 45.455 2.14 0.00 42.54 3.06
8884 13121 1.207488 ACATGGTTAGAGCTGGGGCA 61.207 55.000 0.00 0.00 41.70 5.36
8894 13131 3.112205 GCTGGGGCATCGTGGAGAT 62.112 63.158 0.00 0.00 41.01 2.75
8913 13150 0.478072 TTGGAAGGCCTTTGCTCTGA 59.522 50.000 21.54 0.00 37.74 3.27
8947 13184 0.450184 CCCACAAATTTCCTACGCCG 59.550 55.000 0.00 0.00 0.00 6.46
8953 13190 4.007659 ACAAATTTCCTACGCCGAAGATT 58.992 39.130 0.00 0.00 0.00 2.40
8957 13194 2.018542 TCCTACGCCGAAGATTTTGG 57.981 50.000 0.00 0.00 37.26 3.28
8958 13195 1.014352 CCTACGCCGAAGATTTTGGG 58.986 55.000 0.00 0.00 35.45 4.12
8977 13230 1.651240 GCTCCACGGTACTCGCACTA 61.651 60.000 4.00 0.00 43.89 2.74
8981 13234 0.870307 CACGGTACTCGCACTATGCC 60.870 60.000 4.00 0.00 41.12 4.40
8991 13244 1.202256 CGCACTATGCCGACAAGAGTA 60.202 52.381 0.00 0.00 41.12 2.59
9004 13271 5.233050 CCGACAAGAGTAACATGATTAGCAG 59.767 44.000 0.00 0.00 0.00 4.24
9007 13274 7.223582 CGACAAGAGTAACATGATTAGCAGATT 59.776 37.037 0.00 0.00 0.00 2.40
9018 13285 7.228108 ACATGATTAGCAGATTGATGTAAGTGG 59.772 37.037 0.00 0.00 0.00 4.00
9048 13315 2.300066 GCCGCGAAACAAACTTGGC 61.300 57.895 8.23 0.00 0.00 4.52
9065 13332 2.492090 CGAGTCGCTAGCAAGGCT 59.508 61.111 16.45 5.93 43.41 4.58
9066 13333 1.728069 CGAGTCGCTAGCAAGGCTA 59.272 57.895 16.45 0.00 40.44 3.93
9067 13334 0.100682 CGAGTCGCTAGCAAGGCTAA 59.899 55.000 16.45 0.00 40.82 3.09
9073 13340 1.405526 CGCTAGCAAGGCTAACTGGAA 60.406 52.381 16.45 0.00 40.82 3.53
9086 13353 6.214412 AGGCTAACTGGAATATAGGGAAGATG 59.786 42.308 0.00 0.00 0.00 2.90
9089 13356 5.495926 ACTGGAATATAGGGAAGATGCAG 57.504 43.478 0.00 0.00 33.21 4.41
9106 13373 3.909430 TGCAGGTACACTAGTTTCTTCG 58.091 45.455 0.00 0.00 0.00 3.79
9109 13376 4.855937 GCAGGTACACTAGTTTCTTCGTAC 59.144 45.833 9.39 9.39 0.00 3.67
9113 13380 5.048434 GGTACACTAGTTTCTTCGTACCAGT 60.048 44.000 23.34 6.13 45.29 4.00
9170 13439 5.799213 AGTTACTCCCTCTGTCTCAAAATG 58.201 41.667 0.00 0.00 0.00 2.32
9179 13449 7.228706 TCCCTCTGTCTCAAAATGTAAAACTTC 59.771 37.037 0.00 0.00 0.00 3.01
9242 13512 6.567769 TTTTTCACGCTGATTTGTCTTTTC 57.432 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.438216 TCATTTGCTGAGGTCATTGGA 57.562 42.857 0.00 0.00 0.00 3.53
100 102 2.293122 CGGTCATCCACAACATGTTTGT 59.707 45.455 8.77 8.03 37.82 2.83
107 109 0.034756 CTCCACGGTCATCCACAACA 59.965 55.000 0.00 0.00 0.00 3.33
120 122 0.736325 GTGATCCCGTCAACTCCACG 60.736 60.000 0.00 0.00 38.90 4.94
154 156 2.078452 CACCTCCACCCAATCTGGT 58.922 57.895 0.00 0.00 39.96 4.00
157 159 3.090765 GGCACCTCCACCCAATCT 58.909 61.111 0.00 0.00 34.01 2.40
210 213 2.975799 GACAAAGTCGCCGGCCAA 60.976 61.111 23.46 6.44 0.00 4.52
216 219 3.110178 CGGACGGACAAAGTCGCC 61.110 66.667 0.00 0.00 39.38 5.54
224 227 3.691342 CCTTCCAGCGGACGGACA 61.691 66.667 12.69 0.00 42.91 4.02
234 237 1.538876 TGTCCTCCACCCCTTCCAG 60.539 63.158 0.00 0.00 0.00 3.86
235 238 1.846124 GTGTCCTCCACCCCTTCCA 60.846 63.158 0.00 0.00 38.18 3.53
239 242 4.640690 AGCGTGTCCTCCACCCCT 62.641 66.667 0.00 0.00 41.26 4.79
256 259 4.747529 TCGCCGACTCGAGGACGA 62.748 66.667 26.96 20.96 46.56 4.20
291 294 1.069636 CCTGTCAACTTCTTTCGCAGC 60.070 52.381 0.00 0.00 0.00 5.25
319 323 2.509336 GTCGTCCATGGAGCCGTG 60.509 66.667 16.81 3.05 0.00 4.94
377 381 3.403057 CACCGTCACGCCAACTCG 61.403 66.667 0.00 0.00 0.00 4.18
387 391 1.002624 GCCATCTTTCCCACCGTCA 60.003 57.895 0.00 0.00 0.00 4.35
389 393 2.355115 GGCCATCTTTCCCACCGT 59.645 61.111 0.00 0.00 0.00 4.83
395 399 1.821332 CTCCTGCGGCCATCTTTCC 60.821 63.158 2.24 0.00 0.00 3.13
397 401 2.273449 CCTCCTGCGGCCATCTTT 59.727 61.111 2.24 0.00 0.00 2.52
409 413 4.841617 TCATCCTCCGCGCCTCCT 62.842 66.667 0.00 0.00 0.00 3.69
427 431 0.462047 CTCCCCACATTAGTGTCGGC 60.462 60.000 0.00 0.00 44.39 5.54
428 432 0.178068 CCTCCCCACATTAGTGTCGG 59.822 60.000 0.00 0.00 44.39 4.79
429 433 0.462047 GCCTCCCCACATTAGTGTCG 60.462 60.000 0.00 0.00 44.39 4.35
435 439 1.377987 GCGTTGCCTCCCCACATTA 60.378 57.895 0.00 0.00 0.00 1.90
440 444 2.705312 TTTCATGCGTTGCCTCCCCA 62.705 55.000 0.00 0.00 0.00 4.96
441 445 1.322538 ATTTCATGCGTTGCCTCCCC 61.323 55.000 0.00 0.00 0.00 4.81
443 447 1.795162 CGAATTTCATGCGTTGCCTCC 60.795 52.381 0.00 0.00 0.00 4.30
444 448 1.538276 CGAATTTCATGCGTTGCCTC 58.462 50.000 0.00 0.00 0.00 4.70
445 449 0.456653 GCGAATTTCATGCGTTGCCT 60.457 50.000 0.00 0.00 0.00 4.75
449 453 1.136565 CCGGCGAATTTCATGCGTT 59.863 52.632 9.30 0.00 0.00 4.84
451 455 2.651863 GCCGGCGAATTTCATGCG 60.652 61.111 12.58 0.00 0.00 4.73
483 487 0.433492 CACAATCGACGACGTGGAAC 59.567 55.000 16.70 0.00 40.69 3.62
489 493 0.526739 TATGCCCACAATCGACGACG 60.527 55.000 0.00 0.00 41.26 5.12
492 496 1.821241 CGCTATGCCCACAATCGACG 61.821 60.000 0.00 0.00 0.00 5.12
494 498 0.249447 CTCGCTATGCCCACAATCGA 60.249 55.000 0.00 0.00 0.00 3.59
501 505 1.381191 TCTCACCTCGCTATGCCCA 60.381 57.895 0.00 0.00 0.00 5.36
507 511 0.898326 TGCCAAGTCTCACCTCGCTA 60.898 55.000 0.00 0.00 0.00 4.26
509 513 1.294659 CTTGCCAAGTCTCACCTCGC 61.295 60.000 0.00 0.00 0.00 5.03
560 564 4.995058 TCTTTGACCCCGCCCCCT 62.995 66.667 0.00 0.00 0.00 4.79
561 565 2.798445 ATTTCTTTGACCCCGCCCCC 62.798 60.000 0.00 0.00 0.00 5.40
566 570 0.802494 CCGTCATTTCTTTGACCCCG 59.198 55.000 0.00 0.00 42.46 5.73
567 571 2.194201 TCCGTCATTTCTTTGACCCC 57.806 50.000 0.00 0.00 42.46 4.95
569 573 5.121221 ACATTTCCGTCATTTCTTTGACC 57.879 39.130 0.00 0.00 42.46 4.02
571 575 4.217550 GGGACATTTCCGTCATTTCTTTGA 59.782 41.667 0.00 0.00 43.94 2.69
575 579 3.721087 AGGGACATTTCCGTCATTTCT 57.279 42.857 0.00 0.00 43.94 2.52
582 586 1.375523 GTGCGAGGGACATTTCCGT 60.376 57.895 0.00 0.00 43.94 4.69
586 590 0.321653 GACTGGTGCGAGGGACATTT 60.322 55.000 0.00 0.00 0.00 2.32
599 603 1.725557 ATATCAGACGCGCGACTGGT 61.726 55.000 44.22 42.19 38.18 4.00
601 605 1.596703 CTATATCAGACGCGCGACTG 58.403 55.000 42.11 42.11 38.79 3.51
604 609 1.232119 TTCCTATATCAGACGCGCGA 58.768 50.000 39.36 15.38 0.00 5.87
618 623 4.018415 CCCTTCTCCCTTTGTGATTTCCTA 60.018 45.833 0.00 0.00 0.00 2.94
627 632 0.772124 TCCAGCCCTTCTCCCTTTGT 60.772 55.000 0.00 0.00 0.00 2.83
637 642 2.360350 CGCACATGTCCAGCCCTT 60.360 61.111 0.00 0.00 0.00 3.95
638 643 4.415150 CCGCACATGTCCAGCCCT 62.415 66.667 0.00 0.00 0.00 5.19
659 664 1.199097 AGCGGTAAATTTCGGCACTTG 59.801 47.619 16.46 2.18 34.40 3.16
665 670 0.736636 GGGGAAGCGGTAAATTTCGG 59.263 55.000 0.00 0.00 0.00 4.30
669 674 4.901197 ATTTTTGGGGAAGCGGTAAATT 57.099 36.364 0.00 0.00 0.00 1.82
722 728 5.868801 CACCGTTTTATAAGACCGAGGTTAA 59.131 40.000 0.00 0.00 0.00 2.01
724 730 4.248058 CACCGTTTTATAAGACCGAGGTT 58.752 43.478 0.00 0.00 0.00 3.50
725 731 3.368739 CCACCGTTTTATAAGACCGAGGT 60.369 47.826 0.00 0.00 0.00 3.85
727 733 3.853475 ACCACCGTTTTATAAGACCGAG 58.147 45.455 0.84 0.00 0.00 4.63
728 734 3.959535 ACCACCGTTTTATAAGACCGA 57.040 42.857 0.84 0.00 0.00 4.69
729 735 6.667007 AATAACCACCGTTTTATAAGACCG 57.333 37.500 0.84 0.00 33.17 4.79
730 736 9.992910 CTAAAATAACCACCGTTTTATAAGACC 57.007 33.333 0.84 0.00 33.17 3.85
735 741 6.820656 TCCGCTAAAATAACCACCGTTTTATA 59.179 34.615 0.00 0.00 33.17 0.98
742 748 2.353579 CCTTCCGCTAAAATAACCACCG 59.646 50.000 0.00 0.00 0.00 4.94
763 769 5.056894 ACGATTATTAGCCTATGTCGTCC 57.943 43.478 0.00 0.00 36.23 4.79
769 775 7.905604 TCAATCCAACGATTATTAGCCTATG 57.094 36.000 0.00 0.00 36.54 2.23
770 776 9.167311 GATTCAATCCAACGATTATTAGCCTAT 57.833 33.333 0.00 0.00 36.54 2.57
771 777 8.547967 GATTCAATCCAACGATTATTAGCCTA 57.452 34.615 0.00 0.00 36.54 3.93
772 778 7.440523 GATTCAATCCAACGATTATTAGCCT 57.559 36.000 0.00 0.00 36.54 4.58
788 794 6.715280 TGCTTAGATATGGAGGGATTCAATC 58.285 40.000 0.00 0.00 0.00 2.67
789 795 6.708885 TGCTTAGATATGGAGGGATTCAAT 57.291 37.500 0.00 0.00 0.00 2.57
790 796 6.299141 GTTGCTTAGATATGGAGGGATTCAA 58.701 40.000 0.00 0.00 0.00 2.69
791 797 5.511373 CGTTGCTTAGATATGGAGGGATTCA 60.511 44.000 0.00 0.00 0.00 2.57
792 798 4.932200 CGTTGCTTAGATATGGAGGGATTC 59.068 45.833 0.00 0.00 0.00 2.52
793 799 4.348168 ACGTTGCTTAGATATGGAGGGATT 59.652 41.667 0.00 0.00 0.00 3.01
794 800 3.904339 ACGTTGCTTAGATATGGAGGGAT 59.096 43.478 0.00 0.00 0.00 3.85
795 801 3.305720 ACGTTGCTTAGATATGGAGGGA 58.694 45.455 0.00 0.00 0.00 4.20
796 802 3.069586 TGACGTTGCTTAGATATGGAGGG 59.930 47.826 0.00 0.00 0.00 4.30
797 803 4.038042 TCTGACGTTGCTTAGATATGGAGG 59.962 45.833 0.00 0.00 0.00 4.30
798 804 5.188327 TCTGACGTTGCTTAGATATGGAG 57.812 43.478 0.00 0.00 0.00 3.86
799 805 5.279006 GGATCTGACGTTGCTTAGATATGGA 60.279 44.000 0.00 0.00 30.49 3.41
800 806 4.926238 GGATCTGACGTTGCTTAGATATGG 59.074 45.833 0.00 0.00 30.49 2.74
801 807 5.777802 AGGATCTGACGTTGCTTAGATATG 58.222 41.667 0.00 0.00 30.49 1.78
802 808 6.071840 GGTAGGATCTGACGTTGCTTAGATAT 60.072 42.308 0.00 0.00 30.49 1.63
803 809 5.241064 GGTAGGATCTGACGTTGCTTAGATA 59.759 44.000 0.00 0.00 30.49 1.98
804 810 4.038162 GGTAGGATCTGACGTTGCTTAGAT 59.962 45.833 0.00 0.00 32.87 1.98
805 811 3.380637 GGTAGGATCTGACGTTGCTTAGA 59.619 47.826 0.00 0.00 0.00 2.10
806 812 3.130516 TGGTAGGATCTGACGTTGCTTAG 59.869 47.826 0.00 0.00 0.00 2.18
807 813 3.093814 TGGTAGGATCTGACGTTGCTTA 58.906 45.455 0.00 0.00 0.00 3.09
808 814 1.899814 TGGTAGGATCTGACGTTGCTT 59.100 47.619 0.00 0.00 0.00 3.91
809 815 1.557099 TGGTAGGATCTGACGTTGCT 58.443 50.000 0.00 0.00 0.00 3.91
810 816 2.474816 GATGGTAGGATCTGACGTTGC 58.525 52.381 0.00 0.00 0.00 4.17
811 817 2.099263 ACGATGGTAGGATCTGACGTTG 59.901 50.000 0.00 0.00 0.00 4.10
812 818 2.358267 GACGATGGTAGGATCTGACGTT 59.642 50.000 0.00 0.00 33.10 3.99
813 819 1.948145 GACGATGGTAGGATCTGACGT 59.052 52.381 0.00 0.00 35.53 4.34
814 820 1.267261 GGACGATGGTAGGATCTGACG 59.733 57.143 0.00 0.00 0.00 4.35
815 821 2.034812 GTGGACGATGGTAGGATCTGAC 59.965 54.545 0.00 0.00 0.00 3.51
816 822 2.307768 GTGGACGATGGTAGGATCTGA 58.692 52.381 0.00 0.00 0.00 3.27
817 823 1.341531 GGTGGACGATGGTAGGATCTG 59.658 57.143 0.00 0.00 0.00 2.90
818 824 1.705873 GGTGGACGATGGTAGGATCT 58.294 55.000 0.00 0.00 0.00 2.75
819 825 0.680061 GGGTGGACGATGGTAGGATC 59.320 60.000 0.00 0.00 0.00 3.36
820 826 1.113517 CGGGTGGACGATGGTAGGAT 61.114 60.000 0.00 0.00 35.47 3.24
821 827 1.755395 CGGGTGGACGATGGTAGGA 60.755 63.158 0.00 0.00 35.47 2.94
822 828 2.056223 ACGGGTGGACGATGGTAGG 61.056 63.158 0.00 0.00 37.61 3.18
823 829 1.141019 CACGGGTGGACGATGGTAG 59.859 63.158 0.00 0.00 37.61 3.18
824 830 3.290567 CACGGGTGGACGATGGTA 58.709 61.111 0.00 0.00 37.61 3.25
835 841 0.111639 ACCTTTTATGCACCACGGGT 59.888 50.000 0.00 0.00 35.62 5.28
836 842 0.808755 GACCTTTTATGCACCACGGG 59.191 55.000 0.00 0.00 0.00 5.28
837 843 0.446222 CGACCTTTTATGCACCACGG 59.554 55.000 0.00 0.00 0.00 4.94
838 844 1.136085 CACGACCTTTTATGCACCACG 60.136 52.381 0.00 0.00 0.00 4.94
839 845 1.877443 ACACGACCTTTTATGCACCAC 59.123 47.619 0.00 0.00 0.00 4.16
840 846 1.876799 CACACGACCTTTTATGCACCA 59.123 47.619 0.00 0.00 0.00 4.17
841 847 1.401018 GCACACGACCTTTTATGCACC 60.401 52.381 0.00 0.00 33.27 5.01
842 848 1.724654 CGCACACGACCTTTTATGCAC 60.725 52.381 0.00 0.00 43.93 4.57
843 849 0.515127 CGCACACGACCTTTTATGCA 59.485 50.000 0.00 0.00 43.93 3.96
844 850 0.793104 GCGCACACGACCTTTTATGC 60.793 55.000 0.30 0.00 43.93 3.14
845 851 0.515127 TGCGCACACGACCTTTTATG 59.485 50.000 5.66 0.00 43.93 1.90
846 852 0.796312 CTGCGCACACGACCTTTTAT 59.204 50.000 5.66 0.00 43.93 1.40
847 853 1.837538 GCTGCGCACACGACCTTTTA 61.838 55.000 5.66 0.00 43.93 1.52
848 854 3.022287 CTGCGCACACGACCTTTT 58.978 55.556 5.66 0.00 43.93 2.27
849 855 2.709125 TAGCTGCGCACACGACCTTT 62.709 55.000 5.66 0.00 43.93 3.11
850 856 2.507110 ATAGCTGCGCACACGACCTT 62.507 55.000 5.66 0.00 43.93 3.50
851 857 2.507110 AATAGCTGCGCACACGACCT 62.507 55.000 5.66 0.00 43.93 3.85
852 858 1.635663 AAATAGCTGCGCACACGACC 61.636 55.000 5.66 0.00 43.93 4.79
853 859 0.247301 GAAATAGCTGCGCACACGAC 60.247 55.000 5.66 0.00 43.93 4.34
854 860 1.682867 CGAAATAGCTGCGCACACGA 61.683 55.000 5.66 0.00 43.93 4.35
855 861 1.296145 CGAAATAGCTGCGCACACG 60.296 57.895 5.66 0.00 44.07 4.49
856 862 0.652592 ATCGAAATAGCTGCGCACAC 59.347 50.000 5.66 0.59 0.00 3.82
857 863 1.368641 AATCGAAATAGCTGCGCACA 58.631 45.000 5.66 0.00 0.00 4.57
858 864 2.104144 CAAATCGAAATAGCTGCGCAC 58.896 47.619 5.66 3.54 0.00 5.34
859 865 1.531677 GCAAATCGAAATAGCTGCGCA 60.532 47.619 10.98 10.98 0.00 6.09
860 866 1.115639 GCAAATCGAAATAGCTGCGC 58.884 50.000 0.00 0.00 0.00 6.09
861 867 2.369600 CTGCAAATCGAAATAGCTGCG 58.630 47.619 0.00 0.00 32.45 5.18
862 868 2.355756 TCCTGCAAATCGAAATAGCTGC 59.644 45.455 0.00 0.00 0.00 5.25
863 869 4.534168 CATCCTGCAAATCGAAATAGCTG 58.466 43.478 0.00 0.00 0.00 4.24
864 870 3.004106 GCATCCTGCAAATCGAAATAGCT 59.996 43.478 0.00 0.00 44.26 3.32
865 871 3.303406 GCATCCTGCAAATCGAAATAGC 58.697 45.455 0.00 0.00 44.26 2.97
866 872 3.548587 CGCATCCTGCAAATCGAAATAG 58.451 45.455 0.00 0.00 45.36 1.73
867 873 2.286950 GCGCATCCTGCAAATCGAAATA 60.287 45.455 0.30 0.00 45.36 1.40
868 874 1.534595 GCGCATCCTGCAAATCGAAAT 60.535 47.619 0.30 0.00 45.36 2.17
869 875 0.179166 GCGCATCCTGCAAATCGAAA 60.179 50.000 0.30 0.00 45.36 3.46
870 876 1.026182 AGCGCATCCTGCAAATCGAA 61.026 50.000 11.47 0.00 45.36 3.71
871 877 1.450134 AGCGCATCCTGCAAATCGA 60.450 52.632 11.47 0.00 45.36 3.59
872 878 1.298116 CAGCGCATCCTGCAAATCG 60.298 57.895 11.47 0.00 45.36 3.34
873 879 1.065273 CCAGCGCATCCTGCAAATC 59.935 57.895 11.47 0.00 45.36 2.17
890 896 2.369394 AGCGGAAAATTCACCATCTCC 58.631 47.619 0.00 0.00 0.00 3.71
972 2211 1.633774 CTACTGGCTATGGATCCGGT 58.366 55.000 7.39 0.50 43.83 5.28
1092 2335 3.597728 GGAGGAGAGTAGGCGGCG 61.598 72.222 0.51 0.51 0.00 6.46
1359 2608 4.371855 TGAGTATGCAACTAGGAACGAG 57.628 45.455 0.00 0.00 39.07 4.18
1361 2610 5.580691 TCAATTGAGTATGCAACTAGGAACG 59.419 40.000 3.38 0.00 39.07 3.95
1382 2631 6.976636 TCGCAGTATGAAATTACACATCAA 57.023 33.333 0.00 0.00 39.69 2.57
1386 2635 7.962373 CAGAAATTCGCAGTATGAAATTACACA 59.038 33.333 0.00 0.00 39.69 3.72
1397 2646 3.073678 TGCACACAGAAATTCGCAGTAT 58.926 40.909 0.00 0.00 0.00 2.12
1398 2647 2.488952 TGCACACAGAAATTCGCAGTA 58.511 42.857 0.00 0.00 0.00 2.74
1456 2705 0.036952 ACTGCACCTGGATTGACTCG 60.037 55.000 0.00 0.00 0.00 4.18
1465 2714 3.731652 TTGAAAATGAACTGCACCTGG 57.268 42.857 0.00 0.00 0.00 4.45
1503 2752 3.826637 GCATTCCAAATGCAGCTGT 57.173 47.368 16.64 0.00 44.00 4.40
1516 2765 1.452833 GGAGGGAGTGCCTGCATTC 60.453 63.158 17.58 6.12 32.81 2.67
1525 2774 6.015010 CCTTGTATTAGTAGATGGAGGGAGTG 60.015 46.154 0.00 0.00 0.00 3.51
1613 2862 5.743714 GCATCCAATGGCATATTTTGATGGT 60.744 40.000 18.11 4.94 0.00 3.55
1622 2871 4.345547 TCAAATGTGCATCCAATGGCATAT 59.654 37.500 0.00 0.00 42.56 1.78
1625 2874 1.900486 TCAAATGTGCATCCAATGGCA 59.100 42.857 0.00 0.00 37.77 4.92
1710 2961 6.697892 ACTTTGTTTTTCGTGTCAAACTTTGA 59.302 30.769 0.00 0.00 34.52 2.69
1850 3127 7.933577 TGCTATGTCTTGAGAGAAAGAGAAAAA 59.066 33.333 0.00 0.00 36.86 1.94
1883 3160 8.567948 ACAGTACTTGGTTCATATTCAAACAAG 58.432 33.333 15.91 15.91 0.00 3.16
1909 3186 8.798402 CCTTGACCTTAATGTTACAATACCAAA 58.202 33.333 0.00 0.00 0.00 3.28
1950 3227 4.143137 GCAAAATGGTGCAACGAATAAAGG 60.143 41.667 0.00 0.00 44.29 3.11
1994 3271 1.537202 GACCTGAGATGTGCACAAACC 59.463 52.381 25.72 15.69 0.00 3.27
2134 3411 9.431887 GATATAACGAATATCCCAAAAGTGCTA 57.568 33.333 9.84 0.00 40.41 3.49
2348 3626 5.532406 TCATACTATCAATTTTGGCCAGAGC 59.468 40.000 5.11 0.00 38.76 4.09
2426 3708 7.063544 CCGATTGTTTTGTAGGTTTTTGAAACA 59.936 33.333 5.97 0.00 35.81 2.83
2446 3728 5.043903 CACATAGTCTACCTTCACCGATTG 58.956 45.833 0.00 0.00 0.00 2.67
2487 3787 4.253685 ACACAAGCGCAAATAGTCATAGT 58.746 39.130 11.47 0.00 0.00 2.12
2538 3838 8.910351 AAAATAAGGAAGCTATAGTCATGGTC 57.090 34.615 0.84 0.00 0.00 4.02
2542 3842 7.217200 TGCGAAAATAAGGAAGCTATAGTCAT 58.783 34.615 0.84 0.00 0.00 3.06
2693 3993 9.550406 CTACATATGACCCCGTTTCTAAAATTA 57.450 33.333 10.38 0.00 0.00 1.40
2767 4075 9.396022 GAAGGTTGAATCCAGATATACTTCAAA 57.604 33.333 0.00 0.00 37.51 2.69
2779 4087 2.028112 TGACGGAGAAGGTTGAATCCAG 60.028 50.000 0.00 0.00 0.00 3.86
2886 4195 5.701290 GGCCGCAACTATTTTCATAGATAGT 59.299 40.000 0.00 0.00 39.97 2.12
2891 4200 4.814234 TGTAGGCCGCAACTATTTTCATAG 59.186 41.667 0.00 0.00 38.78 2.23
2961 4271 2.573915 GGACTGATGGAAAAGAGAGGGT 59.426 50.000 0.00 0.00 0.00 4.34
2965 4275 4.163427 AGTCTGGACTGATGGAAAAGAGA 58.837 43.478 2.15 0.00 40.75 3.10
2967 4277 4.982241 AAGTCTGGACTGATGGAAAAGA 57.018 40.909 3.88 0.00 41.58 2.52
2981 4291 2.229784 GCCAGTTCATCCAAAAGTCTGG 59.770 50.000 0.00 0.00 42.37 3.86
3230 4544 4.725280 CGTGAAATGTGATCTGCAATAACG 59.275 41.667 0.00 0.00 0.00 3.18
3297 4611 6.378848 GGGGGAACTAACAGTTGCATAAAATA 59.621 38.462 11.83 0.00 46.62 1.40
3334 4648 5.505165 TGAGACGCGTAACAATAAAAGAC 57.495 39.130 13.97 0.00 0.00 3.01
3350 4664 0.820226 TTGAGCCCTGAGATGAGACG 59.180 55.000 0.00 0.00 0.00 4.18
3546 4860 5.171337 GTGAACATCAAACAAACTAGTTGCG 59.829 40.000 9.34 6.32 41.31 4.85
3610 4924 5.700832 TGTGACTCCACTTGATAATGTTGTC 59.299 40.000 0.00 0.00 43.55 3.18
3648 4962 3.006217 TGGATGATGATTAGAGGCGAGTG 59.994 47.826 0.00 0.00 0.00 3.51
4205 8113 8.405531 ACATGATGGTTATCTTAAAACAATCCG 58.594 33.333 0.00 0.00 36.73 4.18
4243 8154 6.238842 GGGAAGTTAACCTGTGGAAAGTAAAC 60.239 42.308 0.88 0.00 0.00 2.01
4309 8221 3.126001 TGCAAGAGACAAAGGTACCTG 57.874 47.619 17.14 7.47 0.00 4.00
4332 8244 1.409241 CCTGCTCCAGTGCCAATGTAT 60.409 52.381 0.00 0.00 0.00 2.29
4350 8262 3.515901 CCTTAGTAGGCAAAGACACTCCT 59.484 47.826 0.00 0.00 33.99 3.69
4392 8304 9.831682 AAAATAAGGGGGATTAAAAGAGTGTTA 57.168 29.630 0.00 0.00 0.00 2.41
4606 8575 7.410942 GCCAAAAATCGCGTTTGTCATATAAAA 60.411 33.333 16.44 0.00 34.75 1.52
4607 8576 6.034044 GCCAAAAATCGCGTTTGTCATATAAA 59.966 34.615 16.44 0.00 34.75 1.40
4616 8585 3.241701 ACTATGCCAAAAATCGCGTTTG 58.758 40.909 5.77 9.90 36.03 2.93
4621 8590 6.322491 ACTCTTAAACTATGCCAAAAATCGC 58.678 36.000 0.00 0.00 0.00 4.58
4623 8592 8.515414 ACTGACTCTTAAACTATGCCAAAAATC 58.485 33.333 0.00 0.00 0.00 2.17
4665 8634 5.956068 TTTGCACTAACAGCATATTCACA 57.044 34.783 0.00 0.00 42.33 3.58
4672 8641 6.772233 TGATACCATATTTGCACTAACAGCAT 59.228 34.615 0.00 0.00 42.33 3.79
4704 8673 4.402829 TGTGCATTCCAGTTAAAGCCTTA 58.597 39.130 0.00 0.00 0.00 2.69
4705 8674 3.230134 TGTGCATTCCAGTTAAAGCCTT 58.770 40.909 0.00 0.00 0.00 4.35
4706 8675 2.875296 TGTGCATTCCAGTTAAAGCCT 58.125 42.857 0.00 0.00 0.00 4.58
4707 8676 3.874392 ATGTGCATTCCAGTTAAAGCC 57.126 42.857 0.00 0.00 0.00 4.35
4708 8677 3.368843 GCAATGTGCATTCCAGTTAAAGC 59.631 43.478 0.00 0.00 44.26 3.51
4817 8786 9.636965 GACTGAAATACAAAATGCAAAGAAAAC 57.363 29.630 0.00 0.00 0.00 2.43
4850 8819 4.800471 CACTTCAGTTCAAAAACAGGAAGC 59.200 41.667 16.13 0.00 44.48 3.86
4918 8887 7.412137 AAATTTTGCATTGCTCTGAACTAAC 57.588 32.000 10.49 0.00 0.00 2.34
4973 8942 6.803154 AAGAACAAACCATAAGTGTAGCTC 57.197 37.500 0.00 0.00 0.00 4.09
5059 9028 7.450074 TCCAGATTAAGAACTTGCTAAGTGAA 58.550 34.615 2.88 0.00 41.91 3.18
5104 9073 7.144722 TCAACAAATTCAGCAATACCTACAG 57.855 36.000 0.00 0.00 0.00 2.74
5344 9314 1.256812 CTTCAATGTCCCACCAACCC 58.743 55.000 0.00 0.00 0.00 4.11
5660 9632 6.216662 TCCTAAAGATTAGTTCCATTGTCCCA 59.783 38.462 0.00 0.00 0.00 4.37
5678 9650 7.170658 GCACTACTTCATAGCATTCTCCTAAAG 59.829 40.741 0.00 0.00 33.73 1.85
5696 9668 4.101119 ACACTGTAGTTTCCTGCACTACTT 59.899 41.667 11.41 0.00 44.80 2.24
5717 9689 6.931838 ACTACAGTATGCTACAGCTAAAACA 58.068 36.000 2.44 0.00 42.53 2.83
5772 9752 6.105397 ACAACCTGTCTAGACCGAAATAAA 57.895 37.500 20.11 0.00 0.00 1.40
5781 9761 4.023963 GCTTCCAAAACAACCTGTCTAGAC 60.024 45.833 16.32 16.32 0.00 2.59
5923 9903 4.518970 GCAAAAGTAATGGAACCTGACTCA 59.481 41.667 0.00 0.00 0.00 3.41
5924 9904 4.518970 TGCAAAAGTAATGGAACCTGACTC 59.481 41.667 0.00 0.00 0.00 3.36
5925 9905 4.469657 TGCAAAAGTAATGGAACCTGACT 58.530 39.130 0.00 0.00 0.00 3.41
5926 9906 4.846779 TGCAAAAGTAATGGAACCTGAC 57.153 40.909 0.00 0.00 0.00 3.51
5927 9907 6.348950 CGTTATGCAAAAGTAATGGAACCTGA 60.349 38.462 0.00 0.00 0.00 3.86
6051 10036 4.291249 AGGTTGGGTGGTCTGTATATTTGT 59.709 41.667 0.00 0.00 0.00 2.83
6566 10551 9.204570 GTGTACATAGGCGAATTTGTAATAGAT 57.795 33.333 0.00 0.00 0.00 1.98
6659 10648 4.274602 TGGTTTAACGGACAATAGCAGA 57.725 40.909 0.00 0.00 0.00 4.26
6783 10775 7.175816 GGATACAGTATTCTACAGATGCTGAGA 59.824 40.741 8.77 0.00 35.18 3.27
6808 10800 3.795688 ATGGCATAACATGGTCTAGGG 57.204 47.619 0.00 0.00 0.00 3.53
6869 10861 6.447162 CAAGCGTGATAGTATCAAGTATGGA 58.553 40.000 22.03 0.00 41.69 3.41
6870 10862 5.119279 GCAAGCGTGATAGTATCAAGTATGG 59.881 44.000 22.03 12.86 41.69 2.74
6871 10863 5.691754 TGCAAGCGTGATAGTATCAAGTATG 59.308 40.000 22.03 20.40 41.69 2.39
6874 10866 4.123497 TGCAAGCGTGATAGTATCAAGT 57.877 40.909 22.03 10.22 41.69 3.16
6994 11013 1.971357 CAGTAGGCCGGATGATAGGTT 59.029 52.381 5.05 0.00 0.00 3.50
6995 11014 1.147191 TCAGTAGGCCGGATGATAGGT 59.853 52.381 5.05 0.00 0.00 3.08
6999 11018 3.864789 AATTTCAGTAGGCCGGATGAT 57.135 42.857 5.05 0.00 0.00 2.45
7002 11021 3.073062 AGCATAATTTCAGTAGGCCGGAT 59.927 43.478 5.05 0.00 0.00 4.18
7015 11034 7.444299 AGGTGAACAAATTGTGAGCATAATTT 58.556 30.769 10.80 10.80 0.00 1.82
7400 11425 5.719173 TCCCAACAATAATAAGCAGCAAAC 58.281 37.500 0.00 0.00 0.00 2.93
7617 11642 5.445540 GCTCAAATTTTTATTCTGCTGCTGC 60.446 40.000 8.89 8.89 40.20 5.25
7641 11666 3.441496 AGTGGTGTCAACTGCAATTTG 57.559 42.857 1.92 1.92 0.00 2.32
7667 11692 2.845967 GTGTTTTGTGCAACTTGAGTCG 59.154 45.455 0.00 0.00 38.04 4.18
7892 11926 2.621998 AGTATGATTAGGACCACGACGG 59.378 50.000 0.00 0.00 42.50 4.79
8009 12043 8.635765 AATATTACAGAATTTGGTGTCACACT 57.364 30.769 8.12 0.00 34.40 3.55
8051 12085 7.753659 TGTTTTCTGTACGACATCAAGAAAAA 58.246 30.769 13.49 5.50 36.16 1.94
8052 12086 7.310072 TGTTTTCTGTACGACATCAAGAAAA 57.690 32.000 9.67 9.67 33.30 2.29
8130 12164 2.286826 TGGGATGACCAGAAGTCCG 58.713 57.895 0.00 0.00 46.80 4.79
8226 12260 3.263489 ACATCAGCAATGACTCCTGAG 57.737 47.619 6.14 0.00 38.82 3.35
8227 12261 4.406649 TGATACATCAGCAATGACTCCTGA 59.593 41.667 6.14 0.00 39.65 3.86
8254 12288 7.015226 TCGATAATGATCTGCAAAACGATTT 57.985 32.000 0.00 0.00 0.00 2.17
8380 12612 1.402968 CCATGGATTTGTCAAGCCTCG 59.597 52.381 5.56 0.00 39.44 4.63
8421 12653 2.345991 GCACCAAGCGGTCTACCA 59.654 61.111 0.00 0.00 44.71 3.25
8440 12672 1.550130 TAAGGACCCTGGCCTTGTCG 61.550 60.000 11.54 0.00 45.05 4.35
8448 12680 4.133526 TCTAGGATCATAAGGACCCTGG 57.866 50.000 0.00 0.00 0.00 4.45
8453 12685 8.652290 ACTAAATGGTTCTAGGATCATAAGGAC 58.348 37.037 0.00 0.00 0.00 3.85
8489 12721 5.601662 CGTTATCCTACTCCACATTGATGT 58.398 41.667 0.00 0.00 42.84 3.06
8518 12750 3.485711 CGACGATGTTCATGGTTTGGATG 60.486 47.826 2.37 0.00 0.00 3.51
8523 12755 0.442310 CGCGACGATGTTCATGGTTT 59.558 50.000 0.00 0.00 0.00 3.27
8541 12773 3.632145 AGAAATTGCTAACATAAGGGGCG 59.368 43.478 0.00 0.00 0.00 6.13
8613 12850 6.426937 TCATAGAACCTTGAAACTACACAAGC 59.573 38.462 0.00 0.00 41.15 4.01
8614 12851 7.872993 TCTCATAGAACCTTGAAACTACACAAG 59.127 37.037 0.00 0.00 41.85 3.16
8619 12856 8.779354 ATTGTCTCATAGAACCTTGAAACTAC 57.221 34.615 0.00 0.00 0.00 2.73
8626 12863 4.946157 AGGCAATTGTCTCATAGAACCTTG 59.054 41.667 6.77 0.00 0.00 3.61
8630 12867 8.045176 AGTTTTAGGCAATTGTCTCATAGAAC 57.955 34.615 17.48 10.80 0.00 3.01
8631 12868 8.635765 AAGTTTTAGGCAATTGTCTCATAGAA 57.364 30.769 17.48 1.53 0.00 2.10
8634 12871 6.945435 TGGAAGTTTTAGGCAATTGTCTCATA 59.055 34.615 17.48 0.00 0.00 2.15
8636 12873 5.136828 TGGAAGTTTTAGGCAATTGTCTCA 58.863 37.500 17.48 2.03 0.00 3.27
8641 12878 9.921637 TTATAAGTTGGAAGTTTTAGGCAATTG 57.078 29.630 0.00 0.00 0.00 2.32
8654 12891 6.894339 ACACCCAGTTTTATAAGTTGGAAG 57.106 37.500 11.46 7.37 0.00 3.46
8705 12942 6.649141 AGCAATTGTTACGATCTGAGTGTTTA 59.351 34.615 7.40 0.00 0.00 2.01
8706 12943 5.470098 AGCAATTGTTACGATCTGAGTGTTT 59.530 36.000 7.40 0.00 0.00 2.83
8718 12955 5.480281 GCTGTTTGTTAGCAATTGTTACG 57.520 39.130 7.40 0.00 40.81 3.18
8740 12977 0.179166 GCGTGTGCATGGTTATGGTG 60.179 55.000 0.00 0.00 42.15 4.17
8780 13017 0.904865 ATCACCTCTTCGCCTCACCA 60.905 55.000 0.00 0.00 0.00 4.17
8806 13043 8.455903 AAAACATCCACAATGATCTCGAATAT 57.544 30.769 0.00 0.00 38.83 1.28
8864 13101 0.464554 GCCCCAGCTCTAACCATGTC 60.465 60.000 0.00 0.00 35.50 3.06
8865 13102 1.207488 TGCCCCAGCTCTAACCATGT 61.207 55.000 0.00 0.00 40.80 3.21
8866 13103 0.184451 ATGCCCCAGCTCTAACCATG 59.816 55.000 0.00 0.00 40.80 3.66
8867 13104 0.475906 GATGCCCCAGCTCTAACCAT 59.524 55.000 0.00 0.00 40.80 3.55
8868 13105 1.915228 GATGCCCCAGCTCTAACCA 59.085 57.895 0.00 0.00 40.80 3.67
8884 13121 0.181350 GGCCTTCCAATCTCCACGAT 59.819 55.000 0.00 0.00 0.00 3.73
8894 13131 0.478072 TCAGAGCAAAGGCCTTCCAA 59.522 50.000 20.79 0.00 42.56 3.53
8913 13150 1.935400 TGGGCATCCAATGGAGGGT 60.935 57.895 16.17 0.00 40.73 4.34
8947 13184 0.811281 CCGTGGAGCCCAAAATCTTC 59.189 55.000 0.00 0.00 34.18 2.87
8953 13190 1.675219 GAGTACCGTGGAGCCCAAA 59.325 57.895 0.00 0.00 34.18 3.28
8957 13194 3.755628 TGCGAGTACCGTGGAGCC 61.756 66.667 0.00 0.00 41.15 4.70
8958 13195 1.651240 TAGTGCGAGTACCGTGGAGC 61.651 60.000 0.00 0.00 41.15 4.70
8977 13230 3.610040 TCATGTTACTCTTGTCGGCAT 57.390 42.857 0.00 0.00 0.00 4.40
8981 13234 6.036470 TCTGCTAATCATGTTACTCTTGTCG 58.964 40.000 0.00 0.00 0.00 4.35
8991 13244 8.618677 CACTTACATCAATCTGCTAATCATGTT 58.381 33.333 0.00 0.00 0.00 2.71
9004 13271 6.992063 ACATTCAGACCACTTACATCAATC 57.008 37.500 0.00 0.00 0.00 2.67
9007 13274 5.874810 GCTAACATTCAGACCACTTACATCA 59.125 40.000 0.00 0.00 0.00 3.07
9018 13285 1.355971 TTCGCGGCTAACATTCAGAC 58.644 50.000 6.13 0.00 0.00 3.51
9048 13315 0.100682 TTAGCCTTGCTAGCGACTCG 59.899 55.000 10.77 0.00 42.34 4.18
9063 13330 5.877564 GCATCTTCCCTATATTCCAGTTAGC 59.122 44.000 0.00 0.00 0.00 3.09
9064 13331 7.009179 TGCATCTTCCCTATATTCCAGTTAG 57.991 40.000 0.00 0.00 0.00 2.34
9065 13332 6.013379 CCTGCATCTTCCCTATATTCCAGTTA 60.013 42.308 0.00 0.00 0.00 2.24
9066 13333 5.222007 CCTGCATCTTCCCTATATTCCAGTT 60.222 44.000 0.00 0.00 0.00 3.16
9067 13334 4.288105 CCTGCATCTTCCCTATATTCCAGT 59.712 45.833 0.00 0.00 0.00 4.00
9073 13340 5.407049 AGTGTACCTGCATCTTCCCTATAT 58.593 41.667 0.00 0.00 0.00 0.86
9086 13353 3.910648 ACGAAGAAACTAGTGTACCTGC 58.089 45.455 0.00 0.00 0.00 4.85
9106 13373 7.900782 ATATTTCGCCATATTACACTGGTAC 57.099 36.000 0.00 0.00 34.86 3.34
9109 13376 7.899178 TGTATATTTCGCCATATTACACTGG 57.101 36.000 0.00 0.00 35.53 4.00
9153 13422 6.601332 AGTTTTACATTTTGAGACAGAGGGA 58.399 36.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.