Multiple sequence alignment - TraesCS3B01G177100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G177100 chr3B 100.000 3107 0 0 3169 6275 180882313 180879207 0.000000e+00 5738.0
1 TraesCS3B01G177100 chr3B 100.000 2797 0 0 1 2797 180885481 180882685 0.000000e+00 5166.0
2 TraesCS3B01G177100 chr3B 97.690 303 6 1 5234 5535 180875171 180874869 2.590000e-143 520.0
3 TraesCS3B01G177100 chr3B 76.132 729 159 13 5524 6244 83489424 83488703 9.940000e-98 368.0
4 TraesCS3B01G177100 chr3B 94.048 84 3 2 158 239 180885250 180885167 6.600000e-25 126.0
5 TraesCS3B01G177100 chr3B 94.048 84 3 2 232 315 180885324 180885243 6.600000e-25 126.0
6 TraesCS3B01G177100 chr3B 93.333 60 3 1 123 182 774222822 774222880 3.120000e-13 87.9
7 TraesCS3B01G177100 chr3D 93.311 2063 78 10 770 2794 126370809 126368769 0.000000e+00 2990.0
8 TraesCS3B01G177100 chr3D 96.318 869 28 3 3394 4258 126366327 126365459 0.000000e+00 1424.0
9 TraesCS3B01G177100 chr3D 96.561 756 18 4 4485 5236 126365463 126364712 0.000000e+00 1245.0
10 TraesCS3B01G177100 chr3D 96.863 255 4 3 3172 3425 126368415 126368164 2.090000e-114 424.0
11 TraesCS3B01G177100 chr3D 81.340 418 77 1 5522 5938 529492864 529492447 7.790000e-89 339.0
12 TraesCS3B01G177100 chr3D 91.213 239 15 3 4254 4486 209677488 209677726 2.820000e-83 320.0
13 TraesCS3B01G177100 chr3D 90.377 239 17 2 4254 4486 110402899 110402661 6.110000e-80 309.0
14 TraesCS3B01G177100 chr3D 88.889 252 23 3 4254 4500 593241409 593241660 7.900000e-79 305.0
15 TraesCS3B01G177100 chr3A 92.713 2086 83 27 770 2797 136532513 136530439 0.000000e+00 2946.0
16 TraesCS3B01G177100 chr3A 94.668 1069 48 6 3188 4253 136530267 136529205 0.000000e+00 1650.0
17 TraesCS3B01G177100 chr3A 94.195 758 26 10 4489 5236 136529200 136528451 0.000000e+00 1140.0
18 TraesCS3B01G177100 chr3A 87.048 332 32 9 236 560 136532902 136532575 1.290000e-96 364.0
19 TraesCS3B01G177100 chr3A 90.535 243 15 5 4250 4486 265758214 265757974 1.310000e-81 315.0
20 TraesCS3B01G177100 chr3A 88.889 63 6 1 124 185 80685538 80685476 6.750000e-10 76.8
21 TraesCS3B01G177100 chr4B 93.289 1043 65 5 5234 6273 473856527 473855487 0.000000e+00 1533.0
22 TraesCS3B01G177100 chr4B 92.042 1043 67 10 5234 6273 371936325 371937354 0.000000e+00 1452.0
23 TraesCS3B01G177100 chr4B 92.105 304 18 5 5234 5534 371941392 371941692 2.090000e-114 424.0
24 TraesCS3B01G177100 chr4B 91.722 302 20 5 5234 5532 473851449 473851150 1.260000e-111 414.0
25 TraesCS3B01G177100 chr4B 76.060 731 160 14 5522 6244 665472983 665472260 3.570000e-97 366.0
26 TraesCS3B01G177100 chr4B 90.678 236 17 2 4256 4486 330425054 330424819 6.110000e-80 309.0
27 TraesCS3B01G177100 chr7A 85.616 730 102 3 5544 6271 79844352 79843624 0.000000e+00 763.0
28 TraesCS3B01G177100 chr7A 90.496 242 17 2 4254 4489 383096234 383095993 1.310000e-81 315.0
29 TraesCS3B01G177100 chr7A 93.220 59 4 0 127 185 415231492 415231434 3.120000e-13 87.9
30 TraesCS3B01G177100 chr4A 79.810 1050 190 19 5234 6271 25724872 25723833 0.000000e+00 745.0
31 TraesCS3B01G177100 chr4A 74.713 261 48 16 5237 5488 25715362 25715111 4.000000e-17 100.0
32 TraesCS3B01G177100 chr4A 92.857 56 4 0 127 182 321495784 321495839 1.450000e-11 82.4
33 TraesCS3B01G177100 chr5B 76.291 755 160 17 5524 6268 548395214 548394469 9.870000e-103 385.0
34 TraesCS3B01G177100 chr5B 75.207 242 48 10 2339 2570 347303745 347303984 3.090000e-18 104.0
35 TraesCS3B01G177100 chr5B 88.889 63 7 0 121 183 709270966 709271028 1.880000e-10 78.7
36 TraesCS3B01G177100 chr2A 92.405 237 15 3 4254 4487 9107187 9106951 1.010000e-87 335.0
37 TraesCS3B01G177100 chr2A 91.667 60 3 2 123 181 17840964 17841022 1.450000e-11 82.4
38 TraesCS3B01G177100 chr2D 90.123 243 20 3 4252 4490 72845194 72845436 4.720000e-81 313.0
39 TraesCS3B01G177100 chr1B 90.417 240 15 5 4254 4486 474461639 474461877 6.110000e-80 309.0
40 TraesCS3B01G177100 chr7D 73.404 752 180 18 5527 6268 387210916 387210175 4.820000e-66 263.0
41 TraesCS3B01G177100 chr7D 77.406 239 44 7 2346 2576 602748740 602748976 3.950000e-27 134.0
42 TraesCS3B01G177100 chr7D 76.892 251 47 11 2337 2579 627700294 627700541 1.420000e-26 132.0
43 TraesCS3B01G177100 chr7D 76.400 250 49 10 2337 2579 627814978 627815224 6.600000e-25 126.0
44 TraesCS3B01G177100 chr7D 76.190 252 48 12 2337 2579 627759793 627760041 8.540000e-24 122.0
45 TraesCS3B01G177100 chr2B 73.031 749 189 13 5527 6268 601739974 601740716 1.040000e-62 252.0
46 TraesCS3B01G177100 chr4D 76.543 243 43 10 2346 2579 417622902 417623139 3.070000e-23 121.0
47 TraesCS3B01G177100 chr5A 75.833 240 51 6 2346 2579 589296932 589296694 1.430000e-21 115.0
48 TraesCS3B01G177100 chr1D 76.068 234 40 13 2346 2568 421069202 421069430 2.390000e-19 108.0
49 TraesCS3B01G177100 chr1D 76.471 170 30 8 2345 2507 337775182 337775348 4.030000e-12 84.2
50 TraesCS3B01G177100 chr7B 87.209 86 10 1 2494 2579 384201219 384201303 5.180000e-16 97.1
51 TraesCS3B01G177100 chr7B 89.062 64 5 2 120 182 13819899 13819837 1.880000e-10 78.7
52 TraesCS3B01G177100 chr1A 91.667 60 5 0 126 185 9214168 9214109 4.030000e-12 84.2
53 TraesCS3B01G177100 chr1A 89.062 64 6 1 123 185 346817726 346817789 1.880000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G177100 chr3B 180879207 180885481 6274 True 2789.00 5738 97.02400 1 6275 4 chr3B.!!$R3 6274
1 TraesCS3B01G177100 chr3B 83488703 83489424 721 True 368.00 368 76.13200 5524 6244 1 chr3B.!!$R1 720
2 TraesCS3B01G177100 chr3D 126364712 126370809 6097 True 1520.75 2990 95.76325 770 5236 4 chr3D.!!$R3 4466
3 TraesCS3B01G177100 chr3A 136528451 136532902 4451 True 1525.00 2946 92.15600 236 5236 4 chr3A.!!$R3 5000
4 TraesCS3B01G177100 chr4B 473855487 473856527 1040 True 1533.00 1533 93.28900 5234 6273 1 chr4B.!!$R3 1039
5 TraesCS3B01G177100 chr4B 371936325 371937354 1029 False 1452.00 1452 92.04200 5234 6273 1 chr4B.!!$F1 1039
6 TraesCS3B01G177100 chr4B 665472260 665472983 723 True 366.00 366 76.06000 5522 6244 1 chr4B.!!$R4 722
7 TraesCS3B01G177100 chr7A 79843624 79844352 728 True 763.00 763 85.61600 5544 6271 1 chr7A.!!$R1 727
8 TraesCS3B01G177100 chr4A 25723833 25724872 1039 True 745.00 745 79.81000 5234 6271 1 chr4A.!!$R2 1037
9 TraesCS3B01G177100 chr5B 548394469 548395214 745 True 385.00 385 76.29100 5524 6268 1 chr5B.!!$R1 744
10 TraesCS3B01G177100 chr7D 387210175 387210916 741 True 263.00 263 73.40400 5527 6268 1 chr7D.!!$R1 741
11 TraesCS3B01G177100 chr2B 601739974 601740716 742 False 252.00 252 73.03100 5527 6268 1 chr2B.!!$F1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.822164 ACGTAATTCGGGACAGAGGG 59.178 55.000 0.00 0.0 44.69 4.30 F
179 180 1.067212 CGTAATTCGGGACAGAGGGAG 59.933 57.143 0.00 0.0 35.71 4.30 F
1615 1660 0.745845 CAGGCGGCTTGTATCAGCTT 60.746 55.000 9.66 0.0 39.97 3.74 F
1999 2044 1.134753 CTGTGGCTTTGTTGCAGTGAA 59.865 47.619 0.00 0.0 34.04 3.18 F
3850 5823 1.133253 CGATGACCTTGTTGCAGCG 59.867 57.895 0.00 0.0 35.09 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 1660 1.915266 CTGGCTCACCCTCCTGACA 60.915 63.158 0.00 0.00 33.59 3.58 R
1793 1838 3.456365 GGAGCCTCTCAGCTGCGA 61.456 66.667 9.47 7.70 45.15 5.10 R
3379 3480 3.305398 ACGAAGCTTCAGAATCGAAGT 57.695 42.857 25.47 9.37 43.61 3.01 R
3995 5969 5.300034 TGCATATAATTGAACTCCTGGCAAG 59.700 40.000 0.00 0.00 0.00 4.01 R
5494 7484 0.250513 GGCGACAGAAGGAACCAGAT 59.749 55.000 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.562182 ACAATTTCGAGTTTTGGGGTCT 58.438 40.909 8.36 0.00 0.00 3.85
23 24 3.958147 ACAATTTCGAGTTTTGGGGTCTT 59.042 39.130 8.36 0.00 0.00 3.01
24 25 4.404394 ACAATTTCGAGTTTTGGGGTCTTT 59.596 37.500 8.36 0.00 0.00 2.52
25 26 4.848562 ATTTCGAGTTTTGGGGTCTTTC 57.151 40.909 0.00 0.00 0.00 2.62
26 27 2.265589 TCGAGTTTTGGGGTCTTTCC 57.734 50.000 0.00 0.00 0.00 3.13
27 28 1.772453 TCGAGTTTTGGGGTCTTTCCT 59.228 47.619 0.00 0.00 36.25 3.36
28 29 2.974099 TCGAGTTTTGGGGTCTTTCCTA 59.026 45.455 0.00 0.00 36.25 2.94
29 30 3.585732 TCGAGTTTTGGGGTCTTTCCTAT 59.414 43.478 0.00 0.00 36.25 2.57
30 31 4.042435 TCGAGTTTTGGGGTCTTTCCTATT 59.958 41.667 0.00 0.00 36.25 1.73
31 32 5.248934 TCGAGTTTTGGGGTCTTTCCTATTA 59.751 40.000 0.00 0.00 36.25 0.98
32 33 6.069847 TCGAGTTTTGGGGTCTTTCCTATTAT 60.070 38.462 0.00 0.00 36.25 1.28
33 34 6.602009 CGAGTTTTGGGGTCTTTCCTATTATT 59.398 38.462 0.00 0.00 36.25 1.40
34 35 7.122204 CGAGTTTTGGGGTCTTTCCTATTATTT 59.878 37.037 0.00 0.00 36.25 1.40
35 36 8.736097 AGTTTTGGGGTCTTTCCTATTATTTT 57.264 30.769 0.00 0.00 36.25 1.82
36 37 9.166222 AGTTTTGGGGTCTTTCCTATTATTTTT 57.834 29.630 0.00 0.00 36.25 1.94
110 111 9.998752 TTAATTTCTATTACCTCCATCCCAAAA 57.001 29.630 0.00 0.00 0.00 2.44
111 112 8.539117 AATTTCTATTACCTCCATCCCAAAAG 57.461 34.615 0.00 0.00 0.00 2.27
112 113 6.652205 TTCTATTACCTCCATCCCAAAAGT 57.348 37.500 0.00 0.00 0.00 2.66
113 114 7.758820 TTCTATTACCTCCATCCCAAAAGTA 57.241 36.000 0.00 0.00 0.00 2.24
114 115 7.947782 TCTATTACCTCCATCCCAAAAGTAT 57.052 36.000 0.00 0.00 0.00 2.12
115 116 8.344939 TCTATTACCTCCATCCCAAAAGTATT 57.655 34.615 0.00 0.00 0.00 1.89
116 117 8.787818 TCTATTACCTCCATCCCAAAAGTATTT 58.212 33.333 0.00 0.00 42.41 1.40
167 168 7.507672 AGACAAATCTAAGACACGTAATTCG 57.492 36.000 0.00 0.00 38.40 3.34
168 169 6.530534 AGACAAATCTAAGACACGTAATTCGG 59.469 38.462 0.00 0.00 37.35 4.30
169 170 8.317021 AGACAAATCTAAGACACGTAATTCGGG 61.317 40.741 0.00 0.00 40.50 5.14
177 178 0.822164 ACGTAATTCGGGACAGAGGG 59.178 55.000 0.00 0.00 44.69 4.30
178 179 1.108776 CGTAATTCGGGACAGAGGGA 58.891 55.000 0.00 0.00 35.71 4.20
179 180 1.067212 CGTAATTCGGGACAGAGGGAG 59.933 57.143 0.00 0.00 35.71 4.30
180 181 2.108970 GTAATTCGGGACAGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
181 182 2.544844 AATTCGGGACAGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
182 183 2.777459 ATTCGGGACAGAGGGAGTAT 57.223 50.000 0.00 0.00 0.00 2.12
183 184 2.544844 TTCGGGACAGAGGGAGTATT 57.455 50.000 0.00 0.00 0.00 1.89
184 185 2.544844 TCGGGACAGAGGGAGTATTT 57.455 50.000 0.00 0.00 0.00 1.40
185 186 2.385803 TCGGGACAGAGGGAGTATTTC 58.614 52.381 0.00 0.00 0.00 2.17
186 187 2.108168 CGGGACAGAGGGAGTATTTCA 58.892 52.381 0.00 0.00 0.00 2.69
187 188 2.700897 CGGGACAGAGGGAGTATTTCAT 59.299 50.000 0.00 0.00 0.00 2.57
188 189 3.134804 CGGGACAGAGGGAGTATTTCATT 59.865 47.826 0.00 0.00 0.00 2.57
189 190 4.344102 CGGGACAGAGGGAGTATTTCATTA 59.656 45.833 0.00 0.00 0.00 1.90
190 191 5.163343 CGGGACAGAGGGAGTATTTCATTAA 60.163 44.000 0.00 0.00 0.00 1.40
191 192 6.464465 CGGGACAGAGGGAGTATTTCATTAAT 60.464 42.308 0.00 0.00 0.00 1.40
192 193 7.256190 CGGGACAGAGGGAGTATTTCATTAATA 60.256 40.741 0.00 0.00 0.00 0.98
193 194 8.606830 GGGACAGAGGGAGTATTTCATTAATAT 58.393 37.037 0.00 0.00 31.61 1.28
194 195 9.442047 GGACAGAGGGAGTATTTCATTAATATG 57.558 37.037 0.00 0.00 31.61 1.78
195 196 8.854614 ACAGAGGGAGTATTTCATTAATATGC 57.145 34.615 0.00 0.00 31.61 3.14
196 197 8.439971 ACAGAGGGAGTATTTCATTAATATGCA 58.560 33.333 0.00 0.00 31.61 3.96
197 198 9.458727 CAGAGGGAGTATTTCATTAATATGCAT 57.541 33.333 3.79 3.79 31.61 3.96
232 233 5.911752 TGCCTGAGCACTTTTTAAAAATCA 58.088 33.333 13.55 12.65 46.52 2.57
233 234 5.752955 TGCCTGAGCACTTTTTAAAAATCAC 59.247 36.000 13.55 6.39 46.52 3.06
234 235 5.752955 GCCTGAGCACTTTTTAAAAATCACA 59.247 36.000 13.55 9.63 39.53 3.58
292 293 6.882458 CATTTTTCTCTTAAATGCCTGAGC 57.118 37.500 0.00 0.00 36.51 4.26
494 501 9.541143 AACACTTTTATTTACATGGAACCTTTG 57.459 29.630 0.00 0.00 0.00 2.77
495 502 8.700973 ACACTTTTATTTACATGGAACCTTTGT 58.299 29.630 0.00 0.00 0.00 2.83
551 559 8.419076 AACATTTTTCTCAAATTGCGTAAGTT 57.581 26.923 0.00 0.00 41.68 2.66
552 560 8.419076 ACATTTTTCTCAAATTGCGTAAGTTT 57.581 26.923 0.00 0.00 41.68 2.66
553 561 8.878769 ACATTTTTCTCAAATTGCGTAAGTTTT 58.121 25.926 0.00 0.00 41.68 2.43
554 562 9.701355 CATTTTTCTCAAATTGCGTAAGTTTTT 57.299 25.926 0.00 0.00 41.68 1.94
729 737 9.640963 TTGTTTCATAAATACATTTTTACGGGG 57.359 29.630 0.00 0.00 0.00 5.73
730 738 8.251721 TGTTTCATAAATACATTTTTACGGGGG 58.748 33.333 0.00 0.00 0.00 5.40
731 739 8.468399 GTTTCATAAATACATTTTTACGGGGGA 58.532 33.333 0.00 0.00 0.00 4.81
732 740 8.770010 TTCATAAATACATTTTTACGGGGGAT 57.230 30.769 0.00 0.00 0.00 3.85
733 741 8.770010 TCATAAATACATTTTTACGGGGGATT 57.230 30.769 0.00 0.00 0.00 3.01
734 742 9.863650 TCATAAATACATTTTTACGGGGGATTA 57.136 29.630 0.00 0.00 0.00 1.75
739 747 9.871175 AATACATTTTTACGGGGGATTATAACT 57.129 29.630 0.00 0.00 0.00 2.24
742 750 9.871175 ACATTTTTACGGGGGATTATAACTAAT 57.129 29.630 0.00 0.00 0.00 1.73
855 889 9.883142 ATTCCAGAAAAACAAGAAACATTGTAA 57.117 25.926 0.00 0.00 42.49 2.41
1360 1405 2.495084 GGTTCGTTTGCTTTCTCTCCT 58.505 47.619 0.00 0.00 0.00 3.69
1615 1660 0.745845 CAGGCGGCTTGTATCAGCTT 60.746 55.000 9.66 0.00 39.97 3.74
1714 1759 8.713708 TGGTTGAGGTATAAATTCCTTTTTCA 57.286 30.769 0.00 0.00 33.83 2.69
1793 1838 1.981256 ACGGTTTGAGGACATTGCTT 58.019 45.000 0.00 0.00 0.00 3.91
1838 1883 6.003326 TGGACATCAACATGTGTCATTACTT 58.997 36.000 14.12 0.00 43.79 2.24
1869 1914 3.945346 TCAATAGCTTCTTTTACGGGCA 58.055 40.909 0.00 0.00 0.00 5.36
1967 2012 2.412089 CCTGTCGAGGTTCACGATTTTC 59.588 50.000 0.00 0.00 41.62 2.29
1999 2044 1.134753 CTGTGGCTTTGTTGCAGTGAA 59.865 47.619 0.00 0.00 34.04 3.18
2473 2541 8.405531 TCAAAACTTCATTCGAATATGAATCCC 58.594 33.333 10.97 0.00 42.06 3.85
2599 2670 7.482169 AGTAGTGTCAAGGTCTTCATGATTA 57.518 36.000 0.00 0.00 0.00 1.75
2627 2698 8.154420 AGGGGTTGTTACTGTAGTTATTATGT 57.846 34.615 0.00 0.00 0.00 2.29
2788 2888 1.514087 GTCGGGCTGAATCCGTACA 59.486 57.895 0.00 0.00 46.82 2.90
3253 3353 9.522804 TTTTTATTACTGTTTTTGGTGCTACAG 57.477 29.630 0.00 0.00 42.75 2.74
3379 3480 4.508551 AAGTGCCAAGTCCATGATCATA 57.491 40.909 8.15 0.00 0.00 2.15
3383 3484 4.274459 GTGCCAAGTCCATGATCATACTTC 59.726 45.833 17.34 10.39 29.93 3.01
3430 5402 3.451141 TTGGTTGAGTTGTTGAATGGC 57.549 42.857 0.00 0.00 0.00 4.40
3550 5523 9.256477 CGTTATGTGAGGCAGTCTAAATTATTA 57.744 33.333 0.00 0.00 0.00 0.98
3700 5673 5.371115 AGTCATGTAACCAAAAATGGACG 57.629 39.130 1.10 0.00 0.00 4.79
3850 5823 1.133253 CGATGACCTTGTTGCAGCG 59.867 57.895 0.00 0.00 35.09 5.18
3888 5861 4.454504 CGTTGCCTTAGGTAAGTTGTCAAT 59.545 41.667 1.08 0.00 0.00 2.57
3933 5906 7.873505 AGTTGAGGAAGTTTATCTTGTAGACAC 59.126 37.037 0.00 0.00 36.40 3.67
3934 5907 7.297936 TGAGGAAGTTTATCTTGTAGACACA 57.702 36.000 0.00 0.00 36.40 3.72
4010 5984 1.032014 GCAACTTGCCAGGAGTTCAA 58.968 50.000 1.95 0.00 37.42 2.69
4022 5996 5.979517 GCCAGGAGTTCAATTATATGCAAAC 59.020 40.000 0.00 0.00 0.00 2.93
4093 6067 6.774673 TGTCAACCAACCTGAAATATAGTGA 58.225 36.000 0.00 0.00 0.00 3.41
4263 6238 5.848833 AACCTAGTTTCATACTACCTCCG 57.151 43.478 0.00 0.00 38.33 4.63
4264 6239 3.635836 ACCTAGTTTCATACTACCTCCGC 59.364 47.826 0.00 0.00 38.33 5.54
4265 6240 3.005578 CCTAGTTTCATACTACCTCCGCC 59.994 52.174 0.00 0.00 38.33 6.13
4266 6241 1.761198 AGTTTCATACTACCTCCGCCC 59.239 52.381 0.00 0.00 34.56 6.13
4267 6242 1.761198 GTTTCATACTACCTCCGCCCT 59.239 52.381 0.00 0.00 0.00 5.19
4268 6243 1.410004 TTCATACTACCTCCGCCCTG 58.590 55.000 0.00 0.00 0.00 4.45
4269 6244 0.469331 TCATACTACCTCCGCCCTGG 60.469 60.000 0.00 0.00 40.09 4.45
4270 6245 0.759436 CATACTACCTCCGCCCTGGT 60.759 60.000 0.00 0.00 39.52 4.00
4271 6246 0.031414 ATACTACCTCCGCCCTGGTT 60.031 55.000 0.00 0.00 39.52 3.67
4272 6247 0.252375 TACTACCTCCGCCCTGGTTT 60.252 55.000 0.00 0.00 39.52 3.27
4273 6248 0.252375 ACTACCTCCGCCCTGGTTTA 60.252 55.000 0.00 0.00 39.52 2.01
4274 6249 1.129058 CTACCTCCGCCCTGGTTTAT 58.871 55.000 0.00 0.00 39.52 1.40
4275 6250 1.489230 CTACCTCCGCCCTGGTTTATT 59.511 52.381 0.00 0.00 39.52 1.40
4276 6251 0.034477 ACCTCCGCCCTGGTTTATTG 60.034 55.000 0.00 0.00 39.52 1.90
4277 6252 0.751643 CCTCCGCCCTGGTTTATTGG 60.752 60.000 0.00 0.00 39.52 3.16
4278 6253 0.034477 CTCCGCCCTGGTTTATTGGT 60.034 55.000 0.00 0.00 39.52 3.67
4279 6254 0.034863 TCCGCCCTGGTTTATTGGTC 60.035 55.000 0.00 0.00 39.52 4.02
4280 6255 1.035385 CCGCCCTGGTTTATTGGTCC 61.035 60.000 0.00 0.00 0.00 4.46
4281 6256 1.035385 CGCCCTGGTTTATTGGTCCC 61.035 60.000 0.00 0.00 0.00 4.46
4282 6257 0.686441 GCCCTGGTTTATTGGTCCCC 60.686 60.000 0.00 0.00 0.00 4.81
4283 6258 0.707616 CCCTGGTTTATTGGTCCCCA 59.292 55.000 0.00 0.00 0.00 4.96
4284 6259 1.290732 CCCTGGTTTATTGGTCCCCAT 59.709 52.381 0.00 0.00 31.53 4.00
4285 6260 2.292851 CCCTGGTTTATTGGTCCCCATT 60.293 50.000 0.00 0.00 31.53 3.16
4286 6261 2.765699 CCTGGTTTATTGGTCCCCATTG 59.234 50.000 0.00 0.00 31.53 2.82
4287 6262 3.440127 CTGGTTTATTGGTCCCCATTGT 58.560 45.455 0.00 0.00 31.53 2.71
4288 6263 4.570933 CCTGGTTTATTGGTCCCCATTGTA 60.571 45.833 0.00 0.00 31.53 2.41
4289 6264 5.011982 TGGTTTATTGGTCCCCATTGTAA 57.988 39.130 0.00 0.00 31.53 2.41
4290 6265 5.594777 TGGTTTATTGGTCCCCATTGTAAT 58.405 37.500 0.00 0.00 31.53 1.89
4291 6266 6.742756 TGGTTTATTGGTCCCCATTGTAATA 58.257 36.000 0.00 0.00 31.53 0.98
4292 6267 7.366226 TGGTTTATTGGTCCCCATTGTAATAT 58.634 34.615 0.00 0.00 31.53 1.28
4293 6268 7.288852 TGGTTTATTGGTCCCCATTGTAATATG 59.711 37.037 0.00 0.00 31.53 1.78
4294 6269 7.289084 GGTTTATTGGTCCCCATTGTAATATGT 59.711 37.037 0.00 0.00 31.53 2.29
4295 6270 7.831691 TTATTGGTCCCCATTGTAATATGTG 57.168 36.000 0.00 0.00 31.53 3.21
4296 6271 3.561143 TGGTCCCCATTGTAATATGTGC 58.439 45.455 0.00 0.00 0.00 4.57
4297 6272 2.890945 GGTCCCCATTGTAATATGTGCC 59.109 50.000 0.00 0.00 0.00 5.01
4298 6273 3.561143 GTCCCCATTGTAATATGTGCCA 58.439 45.455 0.00 0.00 0.00 4.92
4299 6274 3.957497 GTCCCCATTGTAATATGTGCCAA 59.043 43.478 0.00 0.00 0.00 4.52
4300 6275 4.404073 GTCCCCATTGTAATATGTGCCAAA 59.596 41.667 0.00 0.00 0.00 3.28
4301 6276 5.070313 GTCCCCATTGTAATATGTGCCAAAT 59.930 40.000 0.00 0.00 0.00 2.32
4302 6277 5.664908 TCCCCATTGTAATATGTGCCAAATT 59.335 36.000 0.00 0.00 0.00 1.82
4303 6278 6.157645 TCCCCATTGTAATATGTGCCAAATTT 59.842 34.615 0.00 0.00 0.00 1.82
4304 6279 6.827762 CCCCATTGTAATATGTGCCAAATTTT 59.172 34.615 0.00 0.00 0.00 1.82
4305 6280 7.201714 CCCCATTGTAATATGTGCCAAATTTTG 60.202 37.037 1.99 1.99 0.00 2.44
4306 6281 7.551974 CCCATTGTAATATGTGCCAAATTTTGA 59.448 33.333 10.72 0.00 0.00 2.69
4307 6282 8.389603 CCATTGTAATATGTGCCAAATTTTGAC 58.610 33.333 10.72 0.00 0.00 3.18
4308 6283 7.897575 TTGTAATATGTGCCAAATTTTGACC 57.102 32.000 10.72 2.35 0.00 4.02
4309 6284 6.997655 TGTAATATGTGCCAAATTTTGACCA 58.002 32.000 10.72 4.80 0.00 4.02
4310 6285 7.619050 TGTAATATGTGCCAAATTTTGACCAT 58.381 30.769 10.72 10.71 0.00 3.55
4311 6286 8.753133 TGTAATATGTGCCAAATTTTGACCATA 58.247 29.630 10.72 12.22 0.00 2.74
4312 6287 9.593134 GTAATATGTGCCAAATTTTGACCATAA 57.407 29.630 10.72 2.00 0.00 1.90
4314 6289 9.683870 AATATGTGCCAAATTTTGACCATAAAT 57.316 25.926 10.72 6.01 0.00 1.40
4315 6290 7.999450 ATGTGCCAAATTTTGACCATAAATT 57.001 28.000 10.72 0.00 36.91 1.82
4316 6291 7.814264 TGTGCCAAATTTTGACCATAAATTT 57.186 28.000 10.72 0.00 42.72 1.82
4317 6292 8.908786 TGTGCCAAATTTTGACCATAAATTTA 57.091 26.923 10.72 0.00 41.03 1.40
4318 6293 9.342308 TGTGCCAAATTTTGACCATAAATTTAA 57.658 25.926 10.72 0.00 41.03 1.52
4319 6294 9.605955 GTGCCAAATTTTGACCATAAATTTAAC 57.394 29.630 10.72 0.00 41.03 2.01
4320 6295 9.566432 TGCCAAATTTTGACCATAAATTTAACT 57.434 25.926 10.72 0.00 41.03 2.24
4340 6315 9.539825 TTTAACTAACAAAATGTTCATGCATGT 57.460 25.926 25.43 4.01 40.22 3.21
4341 6316 7.642071 AACTAACAAAATGTTCATGCATGTC 57.358 32.000 25.43 19.05 40.22 3.06
4342 6317 6.747125 ACTAACAAAATGTTCATGCATGTCA 58.253 32.000 25.43 23.31 40.22 3.58
4343 6318 5.910637 AACAAAATGTTCATGCATGTCAC 57.089 34.783 25.43 21.75 35.27 3.67
4344 6319 3.982701 ACAAAATGTTCATGCATGTCACG 59.017 39.130 25.43 15.78 0.00 4.35
4345 6320 4.228317 CAAAATGTTCATGCATGTCACGA 58.772 39.130 25.43 13.87 0.00 4.35
4346 6321 4.502171 AAATGTTCATGCATGTCACGAA 57.498 36.364 25.43 9.97 0.00 3.85
4347 6322 4.707030 AATGTTCATGCATGTCACGAAT 57.293 36.364 25.43 11.37 29.02 3.34
4348 6323 4.707030 ATGTTCATGCATGTCACGAATT 57.293 36.364 25.43 8.70 29.02 2.17
4349 6324 4.502171 TGTTCATGCATGTCACGAATTT 57.498 36.364 25.43 0.00 29.02 1.82
4350 6325 4.475028 TGTTCATGCATGTCACGAATTTC 58.525 39.130 25.43 2.51 29.02 2.17
4351 6326 4.023365 TGTTCATGCATGTCACGAATTTCA 60.023 37.500 25.43 4.94 29.02 2.69
4352 6327 4.968812 TCATGCATGTCACGAATTTCAT 57.031 36.364 25.43 0.00 0.00 2.57
4353 6328 5.313520 TCATGCATGTCACGAATTTCATT 57.686 34.783 25.43 0.00 0.00 2.57
4354 6329 5.096849 TCATGCATGTCACGAATTTCATTG 58.903 37.500 25.43 0.00 0.00 2.82
4355 6330 4.762956 TGCATGTCACGAATTTCATTGA 57.237 36.364 0.00 0.00 0.00 2.57
4356 6331 5.118642 TGCATGTCACGAATTTCATTGAA 57.881 34.783 0.00 0.00 0.00 2.69
4357 6332 5.527033 TGCATGTCACGAATTTCATTGAAA 58.473 33.333 13.88 13.88 35.94 2.69
4358 6333 5.981915 TGCATGTCACGAATTTCATTGAAAA 59.018 32.000 15.34 0.53 35.11 2.29
4359 6334 6.645827 TGCATGTCACGAATTTCATTGAAAAT 59.354 30.769 15.34 7.64 35.11 1.82
4360 6335 7.171167 TGCATGTCACGAATTTCATTGAAAATT 59.829 29.630 15.34 10.22 40.60 1.82
4361 6336 8.646356 GCATGTCACGAATTTCATTGAAAATTA 58.354 29.630 15.34 0.00 38.59 1.40
4364 6339 9.689976 TGTCACGAATTTCATTGAAAATTATGT 57.310 25.926 15.34 7.68 38.59 2.29
4382 6357 8.835467 AATTATGTTCAAATACGAATCCAACG 57.165 30.769 0.00 0.00 0.00 4.10
4383 6358 7.598189 TTATGTTCAAATACGAATCCAACGA 57.402 32.000 0.00 0.00 34.70 3.85
4384 6359 6.677781 ATGTTCAAATACGAATCCAACGAT 57.322 33.333 0.00 0.00 34.70 3.73
4385 6360 7.780008 ATGTTCAAATACGAATCCAACGATA 57.220 32.000 0.00 0.00 34.70 2.92
4386 6361 7.780008 TGTTCAAATACGAATCCAACGATAT 57.220 32.000 0.00 0.00 34.70 1.63
4387 6362 8.874744 TGTTCAAATACGAATCCAACGATATA 57.125 30.769 0.00 0.00 34.70 0.86
4388 6363 9.315525 TGTTCAAATACGAATCCAACGATATAA 57.684 29.630 0.00 0.00 34.70 0.98
4397 6372 9.284594 ACGAATCCAACGATATAATTTTTGTTG 57.715 29.630 0.00 8.06 37.14 3.33
4398 6373 9.497030 CGAATCCAACGATATAATTTTTGTTGA 57.503 29.630 13.41 5.01 39.11 3.18
4416 6391 9.862371 TTTTGTTGACATACACTAACATTTTGT 57.138 25.926 0.00 0.00 33.56 2.83
4417 6392 9.509855 TTTGTTGACATACACTAACATTTTGTC 57.490 29.630 0.00 0.00 33.56 3.18
4418 6393 8.214721 TGTTGACATACACTAACATTTTGTCA 57.785 30.769 0.00 0.00 39.93 3.58
4419 6394 8.341903 TGTTGACATACACTAACATTTTGTCAG 58.658 33.333 0.00 0.00 41.84 3.51
4420 6395 8.342634 GTTGACATACACTAACATTTTGTCAGT 58.657 33.333 0.00 0.00 41.84 3.41
4421 6396 8.445275 TGACATACACTAACATTTTGTCAGTT 57.555 30.769 0.00 0.00 37.62 3.16
4422 6397 9.549078 TGACATACACTAACATTTTGTCAGTTA 57.451 29.630 0.00 0.00 37.62 2.24
4433 6408 8.871686 ACATTTTGTCAGTTAAATCTTTGGTC 57.128 30.769 0.00 0.00 0.00 4.02
4434 6409 8.474025 ACATTTTGTCAGTTAAATCTTTGGTCA 58.526 29.630 0.00 0.00 0.00 4.02
4435 6410 9.311916 CATTTTGTCAGTTAAATCTTTGGTCAA 57.688 29.630 0.00 0.00 0.00 3.18
4436 6411 9.883142 ATTTTGTCAGTTAAATCTTTGGTCAAA 57.117 25.926 0.00 0.00 0.00 2.69
4437 6412 9.883142 TTTTGTCAGTTAAATCTTTGGTCAAAT 57.117 25.926 0.00 0.00 0.00 2.32
4438 6413 9.883142 TTTGTCAGTTAAATCTTTGGTCAAATT 57.117 25.926 0.00 0.00 0.00 1.82
4439 6414 9.883142 TTGTCAGTTAAATCTTTGGTCAAATTT 57.117 25.926 0.00 0.00 0.00 1.82
4440 6415 9.883142 TGTCAGTTAAATCTTTGGTCAAATTTT 57.117 25.926 0.00 3.96 0.00 1.82
4461 6436 9.884636 AATTTTAGCATAAATTACAAAGGGGTC 57.115 29.630 6.92 0.00 36.29 4.46
4462 6437 8.658840 TTTTAGCATAAATTACAAAGGGGTCT 57.341 30.769 0.00 0.00 0.00 3.85
4463 6438 9.756571 TTTTAGCATAAATTACAAAGGGGTCTA 57.243 29.630 0.00 0.00 0.00 2.59
4464 6439 9.756571 TTTAGCATAAATTACAAAGGGGTCTAA 57.243 29.630 0.00 0.00 0.00 2.10
4465 6440 9.930158 TTAGCATAAATTACAAAGGGGTCTAAT 57.070 29.630 0.00 0.00 0.00 1.73
4467 6442 9.930158 AGCATAAATTACAAAGGGGTCTAATAA 57.070 29.630 0.00 0.00 0.00 1.40
4471 6446 8.959676 AAATTACAAAGGGGTCTAATAAACCA 57.040 30.769 0.00 0.00 38.62 3.67
4472 6447 8.589701 AATTACAAAGGGGTCTAATAAACCAG 57.410 34.615 0.00 0.00 38.62 4.00
4473 6448 4.930696 ACAAAGGGGTCTAATAAACCAGG 58.069 43.478 0.00 0.00 38.62 4.45
4474 6449 4.604490 ACAAAGGGGTCTAATAAACCAGGA 59.396 41.667 0.00 0.00 38.62 3.86
4475 6450 4.857130 AAGGGGTCTAATAAACCAGGAC 57.143 45.455 0.00 0.00 38.62 3.85
4476 6451 2.770232 AGGGGTCTAATAAACCAGGACG 59.230 50.000 0.00 0.00 38.62 4.79
4477 6452 2.158856 GGGGTCTAATAAACCAGGACGG 60.159 54.545 0.00 0.00 38.62 4.79
4478 6453 2.767960 GGGTCTAATAAACCAGGACGGA 59.232 50.000 0.00 0.00 38.62 4.69
4479 6454 3.181468 GGGTCTAATAAACCAGGACGGAG 60.181 52.174 0.00 0.00 38.62 4.63
4480 6455 3.181468 GGTCTAATAAACCAGGACGGAGG 60.181 52.174 0.00 0.00 38.63 4.30
4481 6456 3.450096 GTCTAATAAACCAGGACGGAGGT 59.550 47.826 0.00 0.00 40.61 3.85
4482 6457 4.646492 GTCTAATAAACCAGGACGGAGGTA 59.354 45.833 0.00 0.00 37.07 3.08
4483 6458 4.891756 TCTAATAAACCAGGACGGAGGTAG 59.108 45.833 0.00 0.00 37.07 3.18
5044 7029 3.145286 TGCAAATGACGATTCACCTGAA 58.855 40.909 0.00 0.00 38.56 3.02
5059 7044 3.246226 CACCTGAAGAAACTGTTGAGTCG 59.754 47.826 0.00 0.00 0.00 4.18
5224 7209 5.835257 AGTGACATGAACTTTCATTTGTGG 58.165 37.500 0.00 0.00 45.13 4.17
5244 7229 2.934553 GGTAACTAATTGTCACGCCCTC 59.065 50.000 0.00 0.00 0.00 4.30
5245 7230 1.722011 AACTAATTGTCACGCCCTCG 58.278 50.000 0.00 0.00 42.43 4.63
5284 7269 3.317436 ATGGCGAGGAGGGTGAGGA 62.317 63.158 0.00 0.00 0.00 3.71
5315 7301 3.332393 AAGGGGATCGGCAGGAGGA 62.332 63.158 0.00 0.00 0.00 3.71
5371 7361 9.484806 AATATTCTCAATTCAAACTTGATCCCT 57.515 29.630 0.00 0.00 37.00 4.20
5436 7426 4.562425 CACGGCCCACACCACACT 62.562 66.667 0.00 0.00 0.00 3.55
5445 7435 1.000955 CCACACCACACTCACTCTACC 59.999 57.143 0.00 0.00 0.00 3.18
5447 7437 1.133136 ACACCACACTCACTCTACCCT 60.133 52.381 0.00 0.00 0.00 4.34
5458 7448 0.909610 CTCTACCCTCTGGCCCAACA 60.910 60.000 0.00 0.00 33.59 3.33
5476 7466 4.734398 AACAAGTGGTTGCTTCAATTGA 57.266 36.364 3.38 3.38 41.08 2.57
5494 7484 2.257409 GATCTTTCTCCCGCCCTGCA 62.257 60.000 0.00 0.00 0.00 4.41
5619 7611 1.067295 TGATCTTCCCAGGTTGCTGT 58.933 50.000 0.00 0.00 0.00 4.40
5656 7648 2.971330 TGCCCATTTCACCAAAATCTGT 59.029 40.909 0.00 0.00 35.32 3.41
5659 7651 4.381932 GCCCATTTCACCAAAATCTGTAGG 60.382 45.833 0.00 0.00 35.32 3.18
5925 7917 4.008074 ACTTGTGACAAGGACGATTGAT 57.992 40.909 27.01 2.06 34.20 2.57
5973 7965 6.707161 TGTAACTTTAAGTACACCATTTCGCT 59.293 34.615 0.00 0.00 0.00 4.93
5976 7968 5.938125 ACTTTAAGTACACCATTTCGCTGAT 59.062 36.000 0.00 0.00 0.00 2.90
6167 8159 0.760567 ATGACCATAGAGCGCCTGGA 60.761 55.000 19.13 2.32 34.08 3.86
6184 8176 1.173913 GGAATGGTGTACAGCCCAAC 58.826 55.000 21.65 12.00 33.66 3.77
6262 8254 4.806247 CACTTCTTCGGAGAATCATGTACC 59.194 45.833 6.61 0.00 45.90 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.721132 AGACCCCAAAACTCGAAATTGTA 58.279 39.130 0.00 0.00 0.00 2.41
1 2 3.562182 AGACCCCAAAACTCGAAATTGT 58.438 40.909 0.00 0.00 0.00 2.71
2 3 4.584327 AAGACCCCAAAACTCGAAATTG 57.416 40.909 0.00 0.00 0.00 2.32
3 4 4.038763 GGAAAGACCCCAAAACTCGAAATT 59.961 41.667 0.00 0.00 0.00 1.82
4 5 3.572682 GGAAAGACCCCAAAACTCGAAAT 59.427 43.478 0.00 0.00 0.00 2.17
5 6 2.953648 GGAAAGACCCCAAAACTCGAAA 59.046 45.455 0.00 0.00 0.00 3.46
6 7 2.173996 AGGAAAGACCCCAAAACTCGAA 59.826 45.455 0.00 0.00 40.05 3.71
7 8 1.772453 AGGAAAGACCCCAAAACTCGA 59.228 47.619 0.00 0.00 40.05 4.04
8 9 2.271944 AGGAAAGACCCCAAAACTCG 57.728 50.000 0.00 0.00 40.05 4.18
9 10 7.956328 AATAATAGGAAAGACCCCAAAACTC 57.044 36.000 0.00 0.00 40.05 3.01
10 11 8.736097 AAAATAATAGGAAAGACCCCAAAACT 57.264 30.769 0.00 0.00 40.05 2.66
84 85 9.998752 TTTTGGGATGGAGGTAATAGAAATTAA 57.001 29.630 0.00 0.00 29.41 1.40
85 86 9.640952 CTTTTGGGATGGAGGTAATAGAAATTA 57.359 33.333 0.00 0.00 0.00 1.40
86 87 8.122481 ACTTTTGGGATGGAGGTAATAGAAATT 58.878 33.333 0.00 0.00 0.00 1.82
87 88 7.652554 ACTTTTGGGATGGAGGTAATAGAAAT 58.347 34.615 0.00 0.00 0.00 2.17
88 89 7.039722 ACTTTTGGGATGGAGGTAATAGAAA 57.960 36.000 0.00 0.00 0.00 2.52
89 90 6.652205 ACTTTTGGGATGGAGGTAATAGAA 57.348 37.500 0.00 0.00 0.00 2.10
90 91 7.947782 ATACTTTTGGGATGGAGGTAATAGA 57.052 36.000 0.00 0.00 0.00 1.98
91 92 8.996651 AAATACTTTTGGGATGGAGGTAATAG 57.003 34.615 0.00 0.00 0.00 1.73
92 93 9.416284 GAAAATACTTTTGGGATGGAGGTAATA 57.584 33.333 0.00 0.00 31.94 0.98
93 94 8.122481 AGAAAATACTTTTGGGATGGAGGTAAT 58.878 33.333 0.00 0.00 31.94 1.89
94 95 7.475299 AGAAAATACTTTTGGGATGGAGGTAA 58.525 34.615 0.00 0.00 31.94 2.85
95 96 7.039722 AGAAAATACTTTTGGGATGGAGGTA 57.960 36.000 0.00 0.00 31.94 3.08
96 97 5.903923 AGAAAATACTTTTGGGATGGAGGT 58.096 37.500 0.00 0.00 31.94 3.85
97 98 6.857437 AAGAAAATACTTTTGGGATGGAGG 57.143 37.500 0.00 0.00 31.94 4.30
98 99 8.971073 ACATAAGAAAATACTTTTGGGATGGAG 58.029 33.333 0.00 0.00 34.72 3.86
99 100 8.893563 ACATAAGAAAATACTTTTGGGATGGA 57.106 30.769 0.00 0.00 34.72 3.41
100 101 8.971073 AGACATAAGAAAATACTTTTGGGATGG 58.029 33.333 0.00 0.00 34.72 3.51
141 142 9.234384 CGAATTACGTGTCTTAGATTTGTCTAT 57.766 33.333 0.00 0.00 37.22 1.98
142 143 7.699391 CCGAATTACGTGTCTTAGATTTGTCTA 59.301 37.037 0.00 0.00 40.78 2.59
143 144 6.530534 CCGAATTACGTGTCTTAGATTTGTCT 59.469 38.462 0.00 0.00 40.78 3.41
144 145 6.237755 CCCGAATTACGTGTCTTAGATTTGTC 60.238 42.308 0.00 0.00 40.78 3.18
145 146 5.579511 CCCGAATTACGTGTCTTAGATTTGT 59.420 40.000 0.00 0.00 40.78 2.83
146 147 5.808540 TCCCGAATTACGTGTCTTAGATTTG 59.191 40.000 0.00 0.00 40.78 2.32
147 148 5.809051 GTCCCGAATTACGTGTCTTAGATTT 59.191 40.000 0.00 0.00 40.78 2.17
148 149 5.105635 TGTCCCGAATTACGTGTCTTAGATT 60.106 40.000 0.00 0.00 40.78 2.40
149 150 4.400251 TGTCCCGAATTACGTGTCTTAGAT 59.600 41.667 0.00 0.00 40.78 1.98
150 151 3.758023 TGTCCCGAATTACGTGTCTTAGA 59.242 43.478 0.00 0.00 40.78 2.10
151 152 4.100707 TGTCCCGAATTACGTGTCTTAG 57.899 45.455 0.00 0.00 40.78 2.18
152 153 3.758023 TCTGTCCCGAATTACGTGTCTTA 59.242 43.478 0.00 0.00 40.78 2.10
153 154 2.559668 TCTGTCCCGAATTACGTGTCTT 59.440 45.455 0.00 0.00 40.78 3.01
154 155 2.163815 CTCTGTCCCGAATTACGTGTCT 59.836 50.000 0.00 0.00 40.78 3.41
155 156 2.527100 CTCTGTCCCGAATTACGTGTC 58.473 52.381 0.00 0.00 40.78 3.67
156 157 1.203994 CCTCTGTCCCGAATTACGTGT 59.796 52.381 0.00 0.00 40.78 4.49
157 158 1.470979 CCCTCTGTCCCGAATTACGTG 60.471 57.143 0.00 0.00 40.78 4.49
158 159 0.822164 CCCTCTGTCCCGAATTACGT 59.178 55.000 0.00 0.00 40.78 3.57
159 160 1.067212 CTCCCTCTGTCCCGAATTACG 59.933 57.143 0.00 0.00 42.18 3.18
160 161 2.108970 ACTCCCTCTGTCCCGAATTAC 58.891 52.381 0.00 0.00 0.00 1.89
161 162 2.544844 ACTCCCTCTGTCCCGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
162 163 2.544844 TACTCCCTCTGTCCCGAATT 57.455 50.000 0.00 0.00 0.00 2.17
163 164 2.777459 ATACTCCCTCTGTCCCGAAT 57.223 50.000 0.00 0.00 0.00 3.34
164 165 2.544844 AATACTCCCTCTGTCCCGAA 57.455 50.000 0.00 0.00 0.00 4.30
165 166 2.291996 TGAAATACTCCCTCTGTCCCGA 60.292 50.000 0.00 0.00 0.00 5.14
166 167 2.108168 TGAAATACTCCCTCTGTCCCG 58.892 52.381 0.00 0.00 0.00 5.14
167 168 4.779993 AATGAAATACTCCCTCTGTCCC 57.220 45.455 0.00 0.00 0.00 4.46
168 169 9.442047 CATATTAATGAAATACTCCCTCTGTCC 57.558 37.037 0.00 0.00 34.84 4.02
169 170 8.940952 GCATATTAATGAAATACTCCCTCTGTC 58.059 37.037 0.00 0.00 34.84 3.51
170 171 8.439971 TGCATATTAATGAAATACTCCCTCTGT 58.560 33.333 0.00 0.00 34.84 3.41
171 172 8.853077 TGCATATTAATGAAATACTCCCTCTG 57.147 34.615 0.00 0.00 34.84 3.35
210 211 5.752955 TGTGATTTTTAAAAAGTGCTCAGGC 59.247 36.000 17.72 7.33 39.26 4.85
211 212 7.951530 ATGTGATTTTTAAAAAGTGCTCAGG 57.048 32.000 17.72 0.00 0.00 3.86
225 226 8.462016 CCCTCTTTCTCGAATTATGTGATTTTT 58.538 33.333 0.00 0.00 0.00 1.94
226 227 7.829211 TCCCTCTTTCTCGAATTATGTGATTTT 59.171 33.333 0.00 0.00 0.00 1.82
227 228 7.338710 TCCCTCTTTCTCGAATTATGTGATTT 58.661 34.615 0.00 0.00 0.00 2.17
228 229 6.889198 TCCCTCTTTCTCGAATTATGTGATT 58.111 36.000 0.00 0.00 0.00 2.57
229 230 6.098982 ACTCCCTCTTTCTCGAATTATGTGAT 59.901 38.462 0.00 0.00 0.00 3.06
230 231 5.422331 ACTCCCTCTTTCTCGAATTATGTGA 59.578 40.000 0.00 0.00 0.00 3.58
231 232 5.665459 ACTCCCTCTTTCTCGAATTATGTG 58.335 41.667 0.00 0.00 0.00 3.21
232 233 5.941555 ACTCCCTCTTTCTCGAATTATGT 57.058 39.130 0.00 0.00 0.00 2.29
233 234 8.894768 AAATACTCCCTCTTTCTCGAATTATG 57.105 34.615 0.00 0.00 0.00 1.90
234 235 8.705594 TGAAATACTCCCTCTTTCTCGAATTAT 58.294 33.333 0.00 0.00 31.66 1.28
269 270 6.392354 TGCTCAGGCATTTAAGAGAAAAATG 58.608 36.000 4.57 4.57 44.28 2.32
704 712 8.251721 CCCCCGTAAAAATGTATTTATGAAACA 58.748 33.333 0.00 0.00 34.94 2.83
705 713 8.468399 TCCCCCGTAAAAATGTATTTATGAAAC 58.532 33.333 0.00 0.00 34.94 2.78
707 715 8.770010 ATCCCCCGTAAAAATGTATTTATGAA 57.230 30.769 0.00 0.00 34.94 2.57
708 716 8.770010 AATCCCCCGTAAAAATGTATTTATGA 57.230 30.769 0.00 0.00 34.94 2.15
713 721 9.871175 AGTTATAATCCCCCGTAAAAATGTATT 57.129 29.630 0.00 0.00 0.00 1.89
716 724 9.871175 ATTAGTTATAATCCCCCGTAAAAATGT 57.129 29.630 0.00 0.00 0.00 2.71
724 732 9.925545 AAAACTTTATTAGTTATAATCCCCCGT 57.074 29.630 0.00 0.00 46.34 5.28
878 912 4.609018 ACAGCGCTGCCTGAACGT 62.609 61.111 36.28 12.43 36.67 3.99
975 1009 0.877743 GAGAACAAAGGGCTGTGCTC 59.122 55.000 0.00 0.00 43.25 4.26
1360 1405 2.571757 GTCGCCGTCATGGTCTCA 59.428 61.111 0.00 0.00 41.21 3.27
1381 1426 4.662961 TCGTCACCTGCGGCAGTG 62.663 66.667 26.79 22.73 0.00 3.66
1501 1546 3.813529 AAATTTGTCACTAGCTCACGC 57.186 42.857 0.00 0.00 0.00 5.34
1615 1660 1.915266 CTGGCTCACCCTCCTGACA 60.915 63.158 0.00 0.00 33.59 3.58
1714 1759 6.062095 ACTAACACTCTTAACAACATTGCCT 58.938 36.000 0.00 0.00 0.00 4.75
1793 1838 3.456365 GGAGCCTCTCAGCTGCGA 61.456 66.667 9.47 7.70 45.15 5.10
1999 2044 9.975218 AACTTAAGTATTAACACATGAGGGAAT 57.025 29.630 8.92 0.00 35.24 3.01
2310 2358 6.992715 GCACCAGTACTAGTCATTTGGAATAT 59.007 38.462 17.00 0.00 0.00 1.28
2315 2363 3.270877 GGCACCAGTACTAGTCATTTGG 58.729 50.000 0.00 6.01 0.00 3.28
2318 2366 3.774766 TGATGGCACCAGTACTAGTCATT 59.225 43.478 0.00 0.00 0.00 2.57
2388 2456 6.276847 ACGCAAATGTAAGGTCAAATTTTGA 58.723 32.000 7.74 7.74 37.33 2.69
2393 2461 9.915629 TTTTATTACGCAAATGTAAGGTCAAAT 57.084 25.926 0.00 0.00 37.71 2.32
3168 3268 7.709182 AGTTACAACAAAAGCAGAAAATAACCC 59.291 33.333 0.00 0.00 0.00 4.11
3169 3269 8.642908 AGTTACAACAAAAGCAGAAAATAACC 57.357 30.769 0.00 0.00 0.00 2.85
3184 3284 7.985184 ACACACTCATCTCTTAAGTTACAACAA 59.015 33.333 1.63 0.00 0.00 2.83
3185 3285 7.497595 ACACACTCATCTCTTAAGTTACAACA 58.502 34.615 1.63 0.00 0.00 3.33
3186 3286 7.948278 ACACACTCATCTCTTAAGTTACAAC 57.052 36.000 1.63 0.00 0.00 3.32
3253 3353 5.062528 TCAAAAATGTGGAAAGGCAAATCC 58.937 37.500 0.00 0.00 36.21 3.01
3379 3480 3.305398 ACGAAGCTTCAGAATCGAAGT 57.695 42.857 25.47 9.37 43.61 3.01
3383 3484 9.490663 AATAAAAATAACGAAGCTTCAGAATCG 57.509 29.630 25.47 14.03 40.90 3.34
3550 5523 5.769662 TGTACATTTGTTCCTGCTTTCTGAT 59.230 36.000 0.00 0.00 0.00 2.90
3649 5622 5.724328 TGATTGGACATCTGTCTCTTGTAC 58.276 41.667 9.98 0.00 44.20 2.90
3850 5823 5.651172 AGGCAACGTTAATTTTTCTTTGC 57.349 34.783 0.00 0.00 46.39 3.68
3995 5969 5.300034 TGCATATAATTGAACTCCTGGCAAG 59.700 40.000 0.00 0.00 0.00 4.01
4022 5996 6.577103 TCTCAAACTTATGACTATGCAGAGG 58.423 40.000 13.85 0.00 0.00 3.69
4093 6067 7.175467 TGAATGTTCAGATATGTGCAAGACTTT 59.825 33.333 0.00 0.00 32.50 2.66
4253 6228 0.252375 AAACCAGGGCGGAGGTAGTA 60.252 55.000 0.00 0.00 37.07 1.82
4254 6229 0.252375 TAAACCAGGGCGGAGGTAGT 60.252 55.000 0.00 0.00 37.07 2.73
4255 6230 1.129058 ATAAACCAGGGCGGAGGTAG 58.871 55.000 0.00 0.00 37.07 3.18
4256 6231 1.210967 CAATAAACCAGGGCGGAGGTA 59.789 52.381 0.00 0.00 37.07 3.08
4257 6232 0.034477 CAATAAACCAGGGCGGAGGT 60.034 55.000 0.00 0.00 40.61 3.85
4258 6233 0.751643 CCAATAAACCAGGGCGGAGG 60.752 60.000 0.00 0.00 38.63 4.30
4259 6234 0.034477 ACCAATAAACCAGGGCGGAG 60.034 55.000 0.00 0.00 38.63 4.63
4260 6235 0.034863 GACCAATAAACCAGGGCGGA 60.035 55.000 0.00 0.00 38.63 5.54
4261 6236 1.035385 GGACCAATAAACCAGGGCGG 61.035 60.000 0.00 0.00 42.50 6.13
4262 6237 1.035385 GGGACCAATAAACCAGGGCG 61.035 60.000 0.00 0.00 0.00 6.13
4263 6238 2.896278 GGGACCAATAAACCAGGGC 58.104 57.895 0.00 0.00 0.00 5.19
4276 6251 9.264417 AATTTGGCACATATTACAATGGGGACC 62.264 40.741 0.00 0.00 43.43 4.46
4277 6252 3.561143 TGGCACATATTACAATGGGGAC 58.439 45.455 0.00 0.00 30.52 4.46
4278 6253 3.961484 TGGCACATATTACAATGGGGA 57.039 42.857 0.00 0.00 30.52 4.81
4279 6254 5.549742 ATTTGGCACATATTACAATGGGG 57.450 39.130 0.00 0.00 39.30 4.96
4280 6255 7.551974 TCAAAATTTGGCACATATTACAATGGG 59.448 33.333 5.83 0.00 38.96 4.00
4281 6256 8.389603 GTCAAAATTTGGCACATATTACAATGG 58.610 33.333 5.33 0.00 38.96 3.16
4282 6257 8.389603 GGTCAAAATTTGGCACATATTACAATG 58.610 33.333 12.62 0.00 38.96 2.82
4283 6258 8.099537 TGGTCAAAATTTGGCACATATTACAAT 58.900 29.630 12.62 0.00 38.96 2.71
4284 6259 7.445121 TGGTCAAAATTTGGCACATATTACAA 58.555 30.769 12.62 0.00 38.96 2.41
4285 6260 6.997655 TGGTCAAAATTTGGCACATATTACA 58.002 32.000 12.62 0.00 38.96 2.41
4286 6261 9.593134 TTATGGTCAAAATTTGGCACATATTAC 57.407 29.630 12.62 0.00 38.96 1.89
4288 6263 9.683870 ATTTATGGTCAAAATTTGGCACATATT 57.316 25.926 12.62 6.03 41.50 1.28
4289 6264 9.683870 AATTTATGGTCAAAATTTGGCACATAT 57.316 25.926 12.62 3.78 39.30 1.78
4290 6265 9.512588 AAATTTATGGTCAAAATTTGGCACATA 57.487 25.926 12.62 13.17 42.19 2.29
4291 6266 7.999450 AATTTATGGTCAAAATTTGGCACAT 57.001 28.000 12.62 14.05 39.30 3.21
4292 6267 7.814264 AAATTTATGGTCAAAATTTGGCACA 57.186 28.000 12.62 8.10 42.19 4.57
4293 6268 9.605955 GTTAAATTTATGGTCAAAATTTGGCAC 57.394 29.630 12.62 1.03 43.10 5.01
4294 6269 9.566432 AGTTAAATTTATGGTCAAAATTTGGCA 57.434 25.926 12.62 0.00 43.10 4.92
4314 6289 9.539825 ACATGCATGAACATTTTGTTAGTTAAA 57.460 25.926 32.75 0.00 41.28 1.52
4315 6290 9.190858 GACATGCATGAACATTTTGTTAGTTAA 57.809 29.630 32.75 0.00 41.28 2.01
4316 6291 8.355913 TGACATGCATGAACATTTTGTTAGTTA 58.644 29.630 32.75 0.00 41.28 2.24
4317 6292 7.169645 GTGACATGCATGAACATTTTGTTAGTT 59.830 33.333 32.75 4.26 41.28 2.24
4318 6293 6.642131 GTGACATGCATGAACATTTTGTTAGT 59.358 34.615 32.75 4.97 41.28 2.24
4319 6294 6.183359 CGTGACATGCATGAACATTTTGTTAG 60.183 38.462 32.75 10.18 41.28 2.34
4320 6295 5.628606 CGTGACATGCATGAACATTTTGTTA 59.371 36.000 32.75 2.51 41.28 2.41
4321 6296 4.445052 CGTGACATGCATGAACATTTTGTT 59.555 37.500 32.75 6.24 44.37 2.83
4322 6297 3.982701 CGTGACATGCATGAACATTTTGT 59.017 39.130 32.75 8.74 35.44 2.83
4323 6298 4.228317 TCGTGACATGCATGAACATTTTG 58.772 39.130 32.75 19.19 39.51 2.44
4324 6299 4.502171 TCGTGACATGCATGAACATTTT 57.498 36.364 32.75 8.66 39.51 1.82
4325 6300 4.502171 TTCGTGACATGCATGAACATTT 57.498 36.364 32.75 9.47 45.20 2.32
4331 6306 4.968812 ATGAAATTCGTGACATGCATGA 57.031 36.364 32.75 9.00 40.69 3.07
4332 6307 5.096849 TCAATGAAATTCGTGACATGCATG 58.903 37.500 25.09 25.09 31.22 4.06
4333 6308 5.313520 TCAATGAAATTCGTGACATGCAT 57.686 34.783 0.00 0.00 31.22 3.96
4334 6309 4.762956 TCAATGAAATTCGTGACATGCA 57.237 36.364 0.00 0.00 31.22 3.96
4335 6310 6.450845 TTTTCAATGAAATTCGTGACATGC 57.549 33.333 9.41 0.00 31.22 4.06
4338 6313 9.689976 ACATAATTTTCAATGAAATTCGTGACA 57.310 25.926 9.41 0.00 39.32 3.58
4356 6331 9.284594 CGTTGGATTCGTATTTGAACATAATTT 57.715 29.630 0.00 0.00 0.00 1.82
4357 6332 8.670135 TCGTTGGATTCGTATTTGAACATAATT 58.330 29.630 0.00 0.00 0.00 1.40
4358 6333 8.203937 TCGTTGGATTCGTATTTGAACATAAT 57.796 30.769 0.00 0.00 0.00 1.28
4359 6334 7.598189 TCGTTGGATTCGTATTTGAACATAA 57.402 32.000 0.00 0.00 0.00 1.90
4360 6335 7.780008 ATCGTTGGATTCGTATTTGAACATA 57.220 32.000 0.00 0.00 0.00 2.29
4361 6336 6.677781 ATCGTTGGATTCGTATTTGAACAT 57.322 33.333 0.00 0.00 0.00 2.71
4362 6337 7.780008 ATATCGTTGGATTCGTATTTGAACA 57.220 32.000 0.00 0.00 34.00 3.18
4371 6346 9.284594 CAACAAAAATTATATCGTTGGATTCGT 57.715 29.630 0.00 0.00 34.00 3.85
4372 6347 9.497030 TCAACAAAAATTATATCGTTGGATTCG 57.503 29.630 0.00 0.00 35.57 3.34
4390 6365 9.862371 ACAAAATGTTAGTGTATGTCAACAAAA 57.138 25.926 0.00 0.00 34.79 2.44
4391 6366 9.509855 GACAAAATGTTAGTGTATGTCAACAAA 57.490 29.630 0.00 0.00 36.58 2.83
4392 6367 8.678199 TGACAAAATGTTAGTGTATGTCAACAA 58.322 29.630 3.45 0.00 41.70 2.83
4393 6368 8.214721 TGACAAAATGTTAGTGTATGTCAACA 57.785 30.769 3.45 0.00 41.70 3.33
4394 6369 8.342634 ACTGACAAAATGTTAGTGTATGTCAAC 58.657 33.333 7.07 0.00 44.14 3.18
4395 6370 8.445275 ACTGACAAAATGTTAGTGTATGTCAA 57.555 30.769 7.07 0.00 44.14 3.18
4396 6371 8.445275 AACTGACAAAATGTTAGTGTATGTCA 57.555 30.769 8.44 5.68 44.91 3.58
4407 6382 9.313118 GACCAAAGATTTAACTGACAAAATGTT 57.687 29.630 0.00 0.00 31.95 2.71
4408 6383 8.474025 TGACCAAAGATTTAACTGACAAAATGT 58.526 29.630 0.00 0.00 0.00 2.71
4409 6384 8.870160 TGACCAAAGATTTAACTGACAAAATG 57.130 30.769 0.00 0.00 0.00 2.32
4410 6385 9.883142 TTTGACCAAAGATTTAACTGACAAAAT 57.117 25.926 0.00 0.00 0.00 1.82
4411 6386 9.883142 ATTTGACCAAAGATTTAACTGACAAAA 57.117 25.926 0.00 0.00 33.32 2.44
4412 6387 9.883142 AATTTGACCAAAGATTTAACTGACAAA 57.117 25.926 1.57 0.00 33.32 2.83
4413 6388 9.883142 AAATTTGACCAAAGATTTAACTGACAA 57.117 25.926 1.57 0.00 33.32 3.18
4414 6389 9.883142 AAAATTTGACCAAAGATTTAACTGACA 57.117 25.926 0.00 0.00 33.32 3.58
4435 6410 9.884636 GACCCCTTTGTAATTTATGCTAAAATT 57.115 29.630 12.24 12.24 40.98 1.82
4436 6411 9.267071 AGACCCCTTTGTAATTTATGCTAAAAT 57.733 29.630 0.00 0.00 0.00 1.82
4437 6412 8.658840 AGACCCCTTTGTAATTTATGCTAAAA 57.341 30.769 0.00 0.00 0.00 1.52
4438 6413 9.756571 TTAGACCCCTTTGTAATTTATGCTAAA 57.243 29.630 0.00 0.00 0.00 1.85
4439 6414 9.930158 ATTAGACCCCTTTGTAATTTATGCTAA 57.070 29.630 0.00 0.00 0.00 3.09
4441 6416 9.930158 TTATTAGACCCCTTTGTAATTTATGCT 57.070 29.630 0.00 0.00 0.00 3.79
4446 6421 8.959676 TGGTTTATTAGACCCCTTTGTAATTT 57.040 30.769 1.21 0.00 36.30 1.82
4447 6422 7.618117 CCTGGTTTATTAGACCCCTTTGTAATT 59.382 37.037 1.21 0.00 36.30 1.40
4448 6423 7.036425 TCCTGGTTTATTAGACCCCTTTGTAAT 60.036 37.037 1.21 0.00 36.30 1.89
4449 6424 6.275144 TCCTGGTTTATTAGACCCCTTTGTAA 59.725 38.462 1.21 0.00 36.30 2.41
4450 6425 5.791664 TCCTGGTTTATTAGACCCCTTTGTA 59.208 40.000 1.21 0.00 36.30 2.41
4451 6426 4.604490 TCCTGGTTTATTAGACCCCTTTGT 59.396 41.667 1.21 0.00 36.30 2.83
4452 6427 4.948004 GTCCTGGTTTATTAGACCCCTTTG 59.052 45.833 1.21 0.00 36.30 2.77
4453 6428 4.324022 CGTCCTGGTTTATTAGACCCCTTT 60.324 45.833 1.21 0.00 36.30 3.11
4454 6429 3.199289 CGTCCTGGTTTATTAGACCCCTT 59.801 47.826 1.21 0.00 36.30 3.95
4455 6430 2.770232 CGTCCTGGTTTATTAGACCCCT 59.230 50.000 1.21 0.00 36.30 4.79
4456 6431 2.158856 CCGTCCTGGTTTATTAGACCCC 60.159 54.545 1.21 0.00 36.30 4.95
4457 6432 2.767960 TCCGTCCTGGTTTATTAGACCC 59.232 50.000 1.21 0.00 39.52 4.46
4458 6433 3.181468 CCTCCGTCCTGGTTTATTAGACC 60.181 52.174 0.00 0.00 39.52 3.85
4459 6434 3.450096 ACCTCCGTCCTGGTTTATTAGAC 59.550 47.826 0.00 0.00 39.52 2.59
4460 6435 3.716431 ACCTCCGTCCTGGTTTATTAGA 58.284 45.455 0.00 0.00 39.52 2.10
4461 6436 4.648307 ACTACCTCCGTCCTGGTTTATTAG 59.352 45.833 0.00 0.00 39.52 1.73
4462 6437 4.613437 ACTACCTCCGTCCTGGTTTATTA 58.387 43.478 0.00 0.00 39.52 0.98
4463 6438 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
4464 6439 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
4465 6440 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
4466 6441 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
4467 6442 2.842645 ATACTACCTCCGTCCTGGTT 57.157 50.000 0.00 0.00 39.52 3.67
4468 6443 2.842645 AATACTACCTCCGTCCTGGT 57.157 50.000 0.00 0.00 39.52 4.00
4469 6444 5.803237 AAATAATACTACCTCCGTCCTGG 57.197 43.478 0.00 0.00 40.09 4.45
4470 6445 6.479001 CACAAAATAATACTACCTCCGTCCTG 59.521 42.308 0.00 0.00 0.00 3.86
4471 6446 6.155737 ACACAAAATAATACTACCTCCGTCCT 59.844 38.462 0.00 0.00 0.00 3.85
4472 6447 6.343703 ACACAAAATAATACTACCTCCGTCC 58.656 40.000 0.00 0.00 0.00 4.79
4473 6448 7.838771 AACACAAAATAATACTACCTCCGTC 57.161 36.000 0.00 0.00 0.00 4.79
4474 6449 8.508875 CAAAACACAAAATAATACTACCTCCGT 58.491 33.333 0.00 0.00 0.00 4.69
4475 6450 7.966204 CCAAAACACAAAATAATACTACCTCCG 59.034 37.037 0.00 0.00 0.00 4.63
4476 6451 8.799367 ACCAAAACACAAAATAATACTACCTCC 58.201 33.333 0.00 0.00 0.00 4.30
4584 6560 6.483385 CATTTGCACAAAAATGAATGCCTA 57.517 33.333 3.20 0.00 46.13 3.93
4739 6720 7.817418 TCTAAACCAAATACATTATGAGGCC 57.183 36.000 0.00 0.00 0.00 5.19
4768 6749 8.675504 GCCTATATATATAGTATGTAGGGCACG 58.324 40.741 22.60 8.46 38.47 5.34
4906 6891 3.173953 TCAGCCAATGAATCCAAAGGT 57.826 42.857 0.00 0.00 34.02 3.50
5044 7029 2.748605 CTCAGCGACTCAACAGTTTCT 58.251 47.619 0.00 0.00 30.63 2.52
5059 7044 2.159462 GCTTGACAGGTTATTGCTCAGC 60.159 50.000 0.00 0.00 0.00 4.26
5216 7201 5.567534 GCGTGACAATTAGTTACCACAAATG 59.432 40.000 0.00 0.00 33.44 2.32
5224 7209 2.601763 CGAGGGCGTGACAATTAGTTAC 59.398 50.000 0.00 0.00 33.66 2.50
5263 7248 4.899239 CACCCTCCTCGCCATCGC 62.899 72.222 0.00 0.00 35.26 4.58
5267 7252 3.539593 TTCCTCACCCTCCTCGCCA 62.540 63.158 0.00 0.00 0.00 5.69
5277 7262 0.392327 GCTCTGCTTCCTTCCTCACC 60.392 60.000 0.00 0.00 0.00 4.02
5284 7269 1.136329 TCCCCTTGCTCTGCTTCCTT 61.136 55.000 0.00 0.00 0.00 3.36
5315 7301 6.129179 CCTCTCTCTGTCTTATCTTCTCCTT 58.871 44.000 0.00 0.00 0.00 3.36
5371 7361 1.803922 CGAACGGATGCGCTGTGTA 60.804 57.895 9.73 0.00 35.88 2.90
5436 7426 1.001760 GGGCCAGAGGGTAGAGTGA 59.998 63.158 4.39 0.00 36.17 3.41
5445 7435 1.604593 CCACTTGTTGGGCCAGAGG 60.605 63.158 6.23 0.00 42.54 3.69
5458 7448 5.796424 AAGATCAATTGAAGCAACCACTT 57.204 34.783 13.09 5.69 0.00 3.16
5476 7466 1.639635 ATGCAGGGCGGGAGAAAGAT 61.640 55.000 0.00 0.00 0.00 2.40
5494 7484 0.250513 GGCGACAGAAGGAACCAGAT 59.749 55.000 0.00 0.00 0.00 2.90
5619 7611 0.881118 GGCAACAATTCCTGCTTCGA 59.119 50.000 7.92 0.00 38.65 3.71
5925 7917 1.803334 GTACGCCCAATCAACTGTGA 58.197 50.000 0.00 0.00 38.41 3.58
5973 7965 3.703556 CTCAGAGAGGGAGTTTGCTATCA 59.296 47.826 0.00 0.00 0.00 2.15
5976 7968 1.827969 GCTCAGAGAGGGAGTTTGCTA 59.172 52.381 0.00 0.00 34.83 3.49
6167 8159 0.398696 TCGTTGGGCTGTACACCATT 59.601 50.000 6.07 0.00 36.48 3.16
6184 8176 4.366586 ACAACTCTGCATATCACTCATCG 58.633 43.478 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.