Multiple sequence alignment - TraesCS3B01G176700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G176700 chr3B 100.000 3610 0 0 1 3610 179382019 179378410 0.000000e+00 6667
1 TraesCS3B01G176700 chr3A 89.040 1177 82 21 729 1886 134247823 134246675 0.000000e+00 1415
2 TraesCS3B01G176700 chr3A 89.605 1039 78 20 1854 2881 134246629 134245610 0.000000e+00 1293
3 TraesCS3B01G176700 chr3A 90.816 392 19 9 3225 3610 134245374 134244994 3.220000e-140 508
4 TraesCS3B01G176700 chr3A 94.872 78 4 0 2944 3021 134245535 134245458 4.890000e-24 122
5 TraesCS3B01G176700 chr3D 89.153 1134 76 23 727 1843 125497675 125496572 0.000000e+00 1369
6 TraesCS3B01G176700 chr3D 92.517 882 45 12 1845 2710 125496487 125495611 0.000000e+00 1243
7 TraesCS3B01G176700 chr3D 89.917 605 37 12 3014 3610 125494990 125494402 0.000000e+00 758
8 TraesCS3B01G176700 chr6B 90.510 569 46 8 1 565 528679318 528678754 0.000000e+00 745
9 TraesCS3B01G176700 chr6A 78.308 650 59 41 1 637 292624258 292623678 9.600000e-91 344


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G176700 chr3B 179378410 179382019 3609 True 6667.000000 6667 100.00000 1 3610 1 chr3B.!!$R1 3609
1 TraesCS3B01G176700 chr3A 134244994 134247823 2829 True 834.500000 1415 91.08325 729 3610 4 chr3A.!!$R1 2881
2 TraesCS3B01G176700 chr3D 125494402 125497675 3273 True 1123.333333 1369 90.52900 727 3610 3 chr3D.!!$R1 2883
3 TraesCS3B01G176700 chr6B 528678754 528679318 564 True 745.000000 745 90.51000 1 565 1 chr6B.!!$R1 564
4 TraesCS3B01G176700 chr6A 292623678 292624258 580 True 344.000000 344 78.30800 1 637 1 chr6A.!!$R1 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1003 0.172803 TCCGAGAGCCGCTAACTTTC 59.827 55.0 0.0 0.0 36.84 2.62 F
1278 1307 0.103208 CAGCTCCGGCGAAATCTACT 59.897 55.0 9.3 0.0 44.37 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2482 2710 0.162933 CGACGACGATGGTTTTGGTG 59.837 55.0 0.0 0.0 42.66 4.17 R
3095 3692 0.108019 GGCTCCTTTATACCACCCCG 59.892 60.0 0.0 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 233 9.323985 TGGGAACATTTTCTAAAATTTGAACAG 57.676 29.630 0.00 0.00 36.52 3.16
211 234 8.773645 GGGAACATTTTCTAAAATTTGAACAGG 58.226 33.333 0.00 0.00 36.52 4.00
282 305 7.643371 GTCCAAACAATTTTTGAAAAATGCGAT 59.357 29.630 15.79 3.89 33.23 4.58
455 482 8.239681 AGAAAGAAAAAGAAACAGAAAAACGG 57.760 30.769 0.00 0.00 0.00 4.44
456 483 8.085909 AGAAAGAAAAAGAAACAGAAAAACGGA 58.914 29.630 0.00 0.00 0.00 4.69
500 528 5.866335 AAAACCGGTCAAAAAGGAAAAAC 57.134 34.783 8.04 0.00 0.00 2.43
513 541 1.338973 GGAAAAACCGGTTCAGGGAAC 59.661 52.381 22.53 8.01 41.32 3.62
557 585 2.828549 CTGGTACAATGGGCCGGC 60.829 66.667 21.18 21.18 38.70 6.13
568 596 3.681473 GGCCGGCCCATATTTAGC 58.319 61.111 36.64 5.01 0.00 3.09
569 597 2.332654 GGCCGGCCCATATTTAGCG 61.333 63.158 36.64 0.00 0.00 4.26
570 598 1.302192 GCCGGCCCATATTTAGCGA 60.302 57.895 18.11 0.00 0.00 4.93
571 599 0.676782 GCCGGCCCATATTTAGCGAT 60.677 55.000 18.11 0.00 0.00 4.58
572 600 1.086696 CCGGCCCATATTTAGCGATG 58.913 55.000 0.00 0.00 0.00 3.84
573 601 0.447801 CGGCCCATATTTAGCGATGC 59.552 55.000 0.00 0.00 0.00 3.91
574 602 0.447801 GGCCCATATTTAGCGATGCG 59.552 55.000 0.00 0.00 0.00 4.73
575 603 0.447801 GCCCATATTTAGCGATGCGG 59.552 55.000 0.00 0.00 0.00 5.69
576 604 1.086696 CCCATATTTAGCGATGCGGG 58.913 55.000 0.00 0.00 0.00 6.13
577 605 1.086696 CCATATTTAGCGATGCGGGG 58.913 55.000 0.00 0.00 0.00 5.73
578 606 1.610624 CCATATTTAGCGATGCGGGGT 60.611 52.381 0.00 0.00 0.00 4.95
579 607 2.354303 CCATATTTAGCGATGCGGGGTA 60.354 50.000 0.00 0.00 0.00 3.69
580 608 3.531538 CATATTTAGCGATGCGGGGTAT 58.468 45.455 0.00 0.00 0.00 2.73
581 609 2.561478 ATTTAGCGATGCGGGGTATT 57.439 45.000 0.00 0.00 0.00 1.89
582 610 1.588674 TTTAGCGATGCGGGGTATTG 58.411 50.000 0.00 0.00 0.00 1.90
583 611 0.882927 TTAGCGATGCGGGGTATTGC 60.883 55.000 0.00 0.00 35.70 3.56
584 612 2.725203 TAGCGATGCGGGGTATTGCC 62.725 60.000 2.81 0.00 36.01 4.52
593 621 2.045340 GGTATTGCCCCTGTGCGT 60.045 61.111 0.00 0.00 0.00 5.24
594 622 1.677633 GGTATTGCCCCTGTGCGTT 60.678 57.895 0.00 0.00 0.00 4.84
595 623 1.654023 GGTATTGCCCCTGTGCGTTC 61.654 60.000 0.00 0.00 0.00 3.95
596 624 1.743623 TATTGCCCCTGTGCGTTCG 60.744 57.895 0.00 0.00 0.00 3.95
601 629 4.351938 CCCTGTGCGTTCGGTCGA 62.352 66.667 4.55 0.00 0.00 4.20
602 630 3.103911 CCTGTGCGTTCGGTCGAC 61.104 66.667 7.13 7.13 0.00 4.20
603 631 2.354188 CTGTGCGTTCGGTCGACA 60.354 61.111 18.91 0.00 0.00 4.35
604 632 1.947146 CTGTGCGTTCGGTCGACAA 60.947 57.895 18.91 0.31 0.00 3.18
605 633 1.282248 CTGTGCGTTCGGTCGACAAT 61.282 55.000 18.91 0.00 0.00 2.71
606 634 0.876777 TGTGCGTTCGGTCGACAATT 60.877 50.000 18.91 0.00 0.00 2.32
607 635 0.450482 GTGCGTTCGGTCGACAATTG 60.450 55.000 18.91 3.24 0.00 2.32
608 636 1.131826 GCGTTCGGTCGACAATTGG 59.868 57.895 18.91 4.36 0.00 3.16
609 637 1.286354 GCGTTCGGTCGACAATTGGA 61.286 55.000 18.91 3.24 0.00 3.53
610 638 0.437295 CGTTCGGTCGACAATTGGAC 59.563 55.000 18.91 8.25 0.00 4.02
611 639 0.437295 GTTCGGTCGACAATTGGACG 59.563 55.000 18.91 14.59 33.99 4.79
612 640 1.286354 TTCGGTCGACAATTGGACGC 61.286 55.000 18.91 13.84 33.99 5.19
613 641 2.024868 CGGTCGACAATTGGACGCA 61.025 57.895 18.91 8.17 33.99 5.24
614 642 1.561717 CGGTCGACAATTGGACGCAA 61.562 55.000 18.91 4.27 33.99 4.85
615 643 0.589223 GGTCGACAATTGGACGCAAA 59.411 50.000 18.91 3.70 33.99 3.68
616 644 1.399727 GGTCGACAATTGGACGCAAAG 60.400 52.381 18.91 0.00 33.99 2.77
617 645 1.529438 GTCGACAATTGGACGCAAAGA 59.471 47.619 11.55 3.13 0.00 2.52
618 646 1.798223 TCGACAATTGGACGCAAAGAG 59.202 47.619 17.93 0.00 0.00 2.85
619 647 1.725931 CGACAATTGGACGCAAAGAGC 60.726 52.381 10.83 0.00 40.87 4.09
620 648 1.266718 GACAATTGGACGCAAAGAGCA 59.733 47.619 10.83 0.00 46.13 4.26
621 649 1.888512 ACAATTGGACGCAAAGAGCAT 59.111 42.857 10.83 0.00 46.13 3.79
622 650 2.095059 ACAATTGGACGCAAAGAGCATC 60.095 45.455 10.83 0.00 46.13 3.91
623 651 0.729116 ATTGGACGCAAAGAGCATCG 59.271 50.000 0.00 0.00 46.13 3.84
624 652 0.602638 TTGGACGCAAAGAGCATCGT 60.603 50.000 0.00 0.00 46.13 3.73
625 653 0.245266 TGGACGCAAAGAGCATCGTA 59.755 50.000 0.00 0.00 46.13 3.43
626 654 1.134818 TGGACGCAAAGAGCATCGTAT 60.135 47.619 0.00 0.00 46.13 3.06
627 655 2.100087 TGGACGCAAAGAGCATCGTATA 59.900 45.455 0.00 0.00 46.13 1.47
628 656 2.726760 GGACGCAAAGAGCATCGTATAG 59.273 50.000 0.00 0.00 46.13 1.31
629 657 2.726760 GACGCAAAGAGCATCGTATAGG 59.273 50.000 0.00 0.00 46.13 2.57
630 658 2.061773 CGCAAAGAGCATCGTATAGGG 58.938 52.381 0.00 0.00 46.13 3.53
631 659 2.545952 CGCAAAGAGCATCGTATAGGGT 60.546 50.000 0.00 0.00 46.13 4.34
632 660 3.467803 GCAAAGAGCATCGTATAGGGTT 58.532 45.455 0.00 0.00 44.79 4.11
633 661 3.877508 GCAAAGAGCATCGTATAGGGTTT 59.122 43.478 0.00 0.00 44.79 3.27
634 662 4.335594 GCAAAGAGCATCGTATAGGGTTTT 59.664 41.667 0.00 0.00 44.79 2.43
635 663 5.504173 GCAAAGAGCATCGTATAGGGTTTTC 60.504 44.000 0.00 0.00 44.79 2.29
636 664 4.338379 AGAGCATCGTATAGGGTTTTCC 57.662 45.455 0.00 0.00 42.67 3.13
637 665 3.709653 AGAGCATCGTATAGGGTTTTCCA 59.290 43.478 0.00 0.00 42.67 3.53
638 666 4.163458 AGAGCATCGTATAGGGTTTTCCAA 59.837 41.667 0.00 0.00 42.67 3.53
639 667 5.048846 AGCATCGTATAGGGTTTTCCAAT 57.951 39.130 0.00 0.00 42.91 3.16
640 668 6.042781 AGAGCATCGTATAGGGTTTTCCAATA 59.957 38.462 0.00 0.00 42.67 1.90
641 669 6.231211 AGCATCGTATAGGGTTTTCCAATAG 58.769 40.000 0.00 0.00 42.91 1.73
642 670 5.411669 GCATCGTATAGGGTTTTCCAATAGG 59.588 44.000 0.00 0.00 42.91 2.57
643 671 6.743208 GCATCGTATAGGGTTTTCCAATAGGA 60.743 42.308 0.00 0.00 43.93 2.94
644 672 7.394816 CATCGTATAGGGTTTTCCAATAGGAT 58.605 38.462 0.00 0.00 45.26 3.24
645 673 8.537016 CATCGTATAGGGTTTTCCAATAGGATA 58.463 37.037 10.61 0.00 45.26 2.59
646 674 7.899973 TCGTATAGGGTTTTCCAATAGGATAC 58.100 38.462 0.00 0.00 45.26 2.24
647 675 7.731688 TCGTATAGGGTTTTCCAATAGGATACT 59.268 37.037 0.00 0.00 45.26 2.12
648 676 8.033626 CGTATAGGGTTTTCCAATAGGATACTC 58.966 40.741 0.00 0.00 45.26 2.59
649 677 5.648330 AGGGTTTTCCAATAGGATACTCC 57.352 43.478 0.00 0.00 45.26 3.85
650 678 4.415846 AGGGTTTTCCAATAGGATACTCCC 59.584 45.833 0.00 0.00 45.26 4.30
651 679 4.415846 GGGTTTTCCAATAGGATACTCCCT 59.584 45.833 0.00 0.00 45.26 4.20
652 680 5.456330 GGGTTTTCCAATAGGATACTCCCTC 60.456 48.000 0.00 0.00 45.26 4.30
653 681 5.742255 GGTTTTCCAATAGGATACTCCCTCG 60.742 48.000 0.00 0.00 45.26 4.63
654 682 8.097452 GGTTTTCCAATAGGATACTCCCTCGT 62.097 46.154 0.00 0.00 45.26 4.18
655 683 9.478524 GGTTTTCCAATAGGATACTCCCTCGTT 62.479 44.444 0.00 0.00 45.26 3.85
661 689 3.455990 GGATACTCCCTCGTTTTCCTC 57.544 52.381 0.00 0.00 0.00 3.71
662 690 3.032459 GGATACTCCCTCGTTTTCCTCT 58.968 50.000 0.00 0.00 0.00 3.69
663 691 3.181474 GGATACTCCCTCGTTTTCCTCTG 60.181 52.174 0.00 0.00 0.00 3.35
664 692 1.718280 ACTCCCTCGTTTTCCTCTGT 58.282 50.000 0.00 0.00 0.00 3.41
665 693 1.619332 ACTCCCTCGTTTTCCTCTGTC 59.381 52.381 0.00 0.00 0.00 3.51
666 694 1.896465 CTCCCTCGTTTTCCTCTGTCT 59.104 52.381 0.00 0.00 0.00 3.41
667 695 2.300437 CTCCCTCGTTTTCCTCTGTCTT 59.700 50.000 0.00 0.00 0.00 3.01
668 696 2.037251 TCCCTCGTTTTCCTCTGTCTTG 59.963 50.000 0.00 0.00 0.00 3.02
669 697 1.801178 CCTCGTTTTCCTCTGTCTTGC 59.199 52.381 0.00 0.00 0.00 4.01
670 698 2.548920 CCTCGTTTTCCTCTGTCTTGCT 60.549 50.000 0.00 0.00 0.00 3.91
671 699 2.478134 CTCGTTTTCCTCTGTCTTGCTG 59.522 50.000 0.00 0.00 0.00 4.41
672 700 2.102420 TCGTTTTCCTCTGTCTTGCTGA 59.898 45.455 0.00 0.00 0.00 4.26
673 701 2.872245 CGTTTTCCTCTGTCTTGCTGAA 59.128 45.455 0.00 0.00 0.00 3.02
674 702 3.499918 CGTTTTCCTCTGTCTTGCTGAAT 59.500 43.478 0.00 0.00 0.00 2.57
675 703 4.612259 CGTTTTCCTCTGTCTTGCTGAATG 60.612 45.833 0.00 0.00 0.00 2.67
676 704 2.105006 TCCTCTGTCTTGCTGAATGC 57.895 50.000 0.00 0.00 43.25 3.56
677 705 0.725686 CCTCTGTCTTGCTGAATGCG 59.274 55.000 0.00 0.00 46.63 4.73
678 706 1.673923 CCTCTGTCTTGCTGAATGCGA 60.674 52.381 0.00 0.00 46.63 5.10
684 712 3.304041 TTGCTGAATGCGAGACACA 57.696 47.368 0.00 0.00 46.63 3.72
685 713 1.150827 TTGCTGAATGCGAGACACAG 58.849 50.000 0.00 0.00 46.63 3.66
686 714 0.318120 TGCTGAATGCGAGACACAGA 59.682 50.000 0.00 0.00 46.63 3.41
687 715 1.270252 TGCTGAATGCGAGACACAGAA 60.270 47.619 0.00 0.00 46.63 3.02
688 716 1.392853 GCTGAATGCGAGACACAGAAG 59.607 52.381 0.00 0.00 0.00 2.85
689 717 2.928301 GCTGAATGCGAGACACAGAAGA 60.928 50.000 0.00 0.00 0.00 2.87
690 718 3.320626 CTGAATGCGAGACACAGAAGAA 58.679 45.455 0.00 0.00 0.00 2.52
691 719 3.727726 TGAATGCGAGACACAGAAGAAA 58.272 40.909 0.00 0.00 0.00 2.52
692 720 3.742882 TGAATGCGAGACACAGAAGAAAG 59.257 43.478 0.00 0.00 0.00 2.62
693 721 2.890808 TGCGAGACACAGAAGAAAGT 57.109 45.000 0.00 0.00 0.00 2.66
694 722 3.179443 TGCGAGACACAGAAGAAAGTT 57.821 42.857 0.00 0.00 0.00 2.66
695 723 3.123804 TGCGAGACACAGAAGAAAGTTC 58.876 45.455 0.00 0.00 0.00 3.01
696 724 3.181475 TGCGAGACACAGAAGAAAGTTCT 60.181 43.478 0.00 0.00 39.74 3.01
698 726 4.318404 GCGAGACACAGAAGAAAGTTCTTG 60.318 45.833 10.95 1.53 46.84 3.02
699 727 4.210120 CGAGACACAGAAGAAAGTTCTTGG 59.790 45.833 10.95 5.91 46.84 3.61
700 728 4.455606 AGACACAGAAGAAAGTTCTTGGG 58.544 43.478 10.95 2.57 46.84 4.12
701 729 2.952310 ACACAGAAGAAAGTTCTTGGGC 59.048 45.455 10.95 0.00 46.84 5.36
702 730 2.294512 CACAGAAGAAAGTTCTTGGGCC 59.705 50.000 10.95 0.00 46.84 5.80
703 731 2.175715 ACAGAAGAAAGTTCTTGGGCCT 59.824 45.455 10.95 0.00 46.84 5.19
704 732 2.555757 CAGAAGAAAGTTCTTGGGCCTG 59.444 50.000 10.95 8.08 46.84 4.85
705 733 1.889170 GAAGAAAGTTCTTGGGCCTGG 59.111 52.381 10.95 0.00 46.84 4.45
706 734 0.853530 AGAAAGTTCTTGGGCCTGGT 59.146 50.000 4.53 0.00 32.55 4.00
707 735 1.217942 AGAAAGTTCTTGGGCCTGGTT 59.782 47.619 4.53 0.00 32.55 3.67
708 736 2.445525 AGAAAGTTCTTGGGCCTGGTTA 59.554 45.455 4.53 0.00 32.55 2.85
709 737 3.117284 AGAAAGTTCTTGGGCCTGGTTAA 60.117 43.478 4.53 0.00 32.55 2.01
710 738 3.542969 AAGTTCTTGGGCCTGGTTAAT 57.457 42.857 4.53 0.00 0.00 1.40
711 739 4.668138 AAGTTCTTGGGCCTGGTTAATA 57.332 40.909 4.53 0.00 0.00 0.98
712 740 4.236527 AGTTCTTGGGCCTGGTTAATAG 57.763 45.455 4.53 0.00 0.00 1.73
713 741 3.850173 AGTTCTTGGGCCTGGTTAATAGA 59.150 43.478 4.53 0.00 0.00 1.98
714 742 4.478686 AGTTCTTGGGCCTGGTTAATAGAT 59.521 41.667 4.53 0.00 0.00 1.98
715 743 5.670361 AGTTCTTGGGCCTGGTTAATAGATA 59.330 40.000 4.53 0.00 0.00 1.98
716 744 6.332901 AGTTCTTGGGCCTGGTTAATAGATAT 59.667 38.462 4.53 0.00 0.00 1.63
717 745 7.516209 AGTTCTTGGGCCTGGTTAATAGATATA 59.484 37.037 4.53 0.00 0.00 0.86
718 746 7.253905 TCTTGGGCCTGGTTAATAGATATAC 57.746 40.000 4.53 0.00 0.00 1.47
719 747 7.023120 TCTTGGGCCTGGTTAATAGATATACT 58.977 38.462 4.53 0.00 0.00 2.12
720 748 6.869206 TGGGCCTGGTTAATAGATATACTC 57.131 41.667 4.53 0.00 0.00 2.59
721 749 6.327781 TGGGCCTGGTTAATAGATATACTCA 58.672 40.000 4.53 0.00 0.00 3.41
722 750 6.965866 TGGGCCTGGTTAATAGATATACTCAT 59.034 38.462 4.53 0.00 0.00 2.90
723 751 7.092891 TGGGCCTGGTTAATAGATATACTCATG 60.093 40.741 4.53 0.00 0.00 3.07
724 752 7.092846 GGGCCTGGTTAATAGATATACTCATGT 60.093 40.741 0.84 0.00 0.00 3.21
725 753 8.322091 GGCCTGGTTAATAGATATACTCATGTT 58.678 37.037 0.00 0.00 0.00 2.71
746 774 6.269315 TGTTTAACATGCTAACCACAACAAG 58.731 36.000 0.00 0.00 0.00 3.16
766 794 2.066340 CCCAGTAGCCCAACTCACA 58.934 57.895 0.00 0.00 0.00 3.58
768 796 1.004745 CCCAGTAGCCCAACTCACAAT 59.995 52.381 0.00 0.00 0.00 2.71
769 797 2.359900 CCAGTAGCCCAACTCACAATC 58.640 52.381 0.00 0.00 0.00 2.67
771 799 3.411446 CAGTAGCCCAACTCACAATCAA 58.589 45.455 0.00 0.00 0.00 2.57
773 801 1.620822 AGCCCAACTCACAATCAACC 58.379 50.000 0.00 0.00 0.00 3.77
775 803 1.895131 GCCCAACTCACAATCAACCAT 59.105 47.619 0.00 0.00 0.00 3.55
778 806 2.353011 CCAACTCACAATCAACCATGGC 60.353 50.000 13.04 0.00 0.00 4.40
779 807 2.291209 ACTCACAATCAACCATGGCA 57.709 45.000 13.04 0.00 0.00 4.92
780 808 1.888512 ACTCACAATCAACCATGGCAC 59.111 47.619 13.04 0.00 0.00 5.01
781 809 1.203052 CTCACAATCAACCATGGCACC 59.797 52.381 13.04 0.00 0.00 5.01
782 810 0.967662 CACAATCAACCATGGCACCA 59.032 50.000 13.04 0.00 0.00 4.17
783 811 1.343789 CACAATCAACCATGGCACCAA 59.656 47.619 13.04 0.00 0.00 3.67
784 812 1.619827 ACAATCAACCATGGCACCAAG 59.380 47.619 13.04 0.55 0.00 3.61
785 813 0.609662 AATCAACCATGGCACCAAGC 59.390 50.000 13.04 0.00 44.65 4.01
811 839 1.296715 CTCGACCAGGTTCCCCAAG 59.703 63.158 0.00 0.00 0.00 3.61
891 920 1.668867 GCTCCCTATCCTCCGCTTC 59.331 63.158 0.00 0.00 0.00 3.86
905 934 1.376812 GCTTCGTCCACCCCGAATT 60.377 57.895 0.00 0.00 42.74 2.17
955 984 4.753662 TACTGGCGGCCGTCCTCT 62.754 66.667 29.71 18.01 0.00 3.69
974 1003 0.172803 TCCGAGAGCCGCTAACTTTC 59.827 55.000 0.00 0.00 36.84 2.62
1149 1178 1.979855 TCATGGTTTGTCCCTGTGTG 58.020 50.000 0.00 0.00 34.22 3.82
1151 1180 1.337703 CATGGTTTGTCCCTGTGTGTG 59.662 52.381 0.00 0.00 34.77 3.82
1152 1181 0.395036 TGGTTTGTCCCTGTGTGTGG 60.395 55.000 0.00 0.00 34.77 4.17
1153 1182 0.395173 GGTTTGTCCCTGTGTGTGGT 60.395 55.000 0.00 0.00 0.00 4.16
1154 1183 1.470051 GTTTGTCCCTGTGTGTGGTT 58.530 50.000 0.00 0.00 0.00 3.67
1155 1184 1.822371 GTTTGTCCCTGTGTGTGGTTT 59.178 47.619 0.00 0.00 0.00 3.27
1156 1185 1.468985 TTGTCCCTGTGTGTGGTTTG 58.531 50.000 0.00 0.00 0.00 2.93
1157 1186 1.034838 TGTCCCTGTGTGTGGTTTGC 61.035 55.000 0.00 0.00 0.00 3.68
1221 1250 5.922544 CCTAATTTTGTGCTGACCTTTTCTG 59.077 40.000 0.00 0.00 0.00 3.02
1278 1307 0.103208 CAGCTCCGGCGAAATCTACT 59.897 55.000 9.30 0.00 44.37 2.57
1332 1361 9.766277 GATATTGAGAAGTTGTTGAAAGATGTC 57.234 33.333 0.00 0.00 0.00 3.06
1439 1468 1.134007 AGCATGTGCCATAGCTGCTAA 60.134 47.619 14.13 0.00 43.84 3.09
1440 1469 1.884579 GCATGTGCCATAGCTGCTAAT 59.115 47.619 14.13 0.00 40.80 1.73
1441 1470 3.076621 GCATGTGCCATAGCTGCTAATA 58.923 45.455 14.13 0.00 40.80 0.98
1442 1471 3.693085 GCATGTGCCATAGCTGCTAATAT 59.307 43.478 14.13 0.00 40.80 1.28
1443 1472 4.157289 GCATGTGCCATAGCTGCTAATATT 59.843 41.667 14.13 0.00 40.80 1.28
1444 1473 5.355071 GCATGTGCCATAGCTGCTAATATTA 59.645 40.000 14.13 0.00 40.80 0.98
1470 1502 1.664016 CCATGTCAAACAACTGCTCGC 60.664 52.381 0.00 0.00 0.00 5.03
1474 1506 1.439365 CAAACAACTGCTCGCGCTC 60.439 57.895 5.56 0.00 36.97 5.03
1529 1572 4.883083 TCAAGAGCTCGTATTTGTGAAGT 58.117 39.130 8.37 0.00 0.00 3.01
1531 1574 6.093404 TCAAGAGCTCGTATTTGTGAAGTAG 58.907 40.000 8.37 0.00 0.00 2.57
1554 1597 6.536447 AGAATCTGAAACATTTGGGCAAAAT 58.464 32.000 0.00 0.00 39.13 1.82
1638 1686 4.639135 AAGAAGTGAAGTTGTTTCTGGC 57.361 40.909 0.00 0.00 36.71 4.85
1642 1690 1.098869 TGAAGTTGTTTCTGGCGCAA 58.901 45.000 10.83 0.00 36.71 4.85
1663 1711 2.826128 ACTCCAGAAACATAGACGCAGA 59.174 45.455 0.00 0.00 0.00 4.26
1670 1718 6.348458 CCAGAAACATAGACGCAGATGAAAAA 60.348 38.462 0.00 0.00 0.00 1.94
1673 1721 5.283060 ACATAGACGCAGATGAAAAACAC 57.717 39.130 0.00 0.00 0.00 3.32
1675 1723 6.163476 ACATAGACGCAGATGAAAAACACTA 58.837 36.000 0.00 0.00 0.00 2.74
1676 1724 6.649141 ACATAGACGCAGATGAAAAACACTAA 59.351 34.615 0.00 0.00 0.00 2.24
1677 1725 7.172532 ACATAGACGCAGATGAAAAACACTAAA 59.827 33.333 0.00 0.00 0.00 1.85
1678 1726 6.560253 AGACGCAGATGAAAAACACTAAAT 57.440 33.333 0.00 0.00 0.00 1.40
1679 1727 6.970484 AGACGCAGATGAAAAACACTAAATT 58.030 32.000 0.00 0.00 0.00 1.82
1680 1728 6.857964 AGACGCAGATGAAAAACACTAAATTG 59.142 34.615 0.00 0.00 0.00 2.32
1681 1729 5.402270 ACGCAGATGAAAAACACTAAATTGC 59.598 36.000 0.00 0.00 0.00 3.56
1684 1732 7.359431 CGCAGATGAAAAACACTAAATTGCATT 60.359 33.333 0.00 0.00 0.00 3.56
1738 1793 9.702726 CAAACTTCACATTATATTCTACAACCG 57.297 33.333 0.00 0.00 0.00 4.44
1759 1814 2.192664 TAGGCACATCCAGCGAAAAA 57.807 45.000 0.00 0.00 37.29 1.94
1816 1871 2.348472 TCCTCAACAGAACCCCAGAAT 58.652 47.619 0.00 0.00 0.00 2.40
1817 1872 2.040278 TCCTCAACAGAACCCCAGAATG 59.960 50.000 0.00 0.00 0.00 2.67
1822 1877 2.915869 ACAGAACCCCAGAATGTCCTA 58.084 47.619 0.00 0.00 0.00 2.94
1832 1887 4.288105 CCCAGAATGTCCTATCTTAGCCAT 59.712 45.833 0.00 0.00 0.00 4.40
1997 2214 4.501071 TCTCCTTGTACGCTTACCATTTC 58.499 43.478 0.00 0.00 0.00 2.17
2010 2228 6.306356 CGCTTACCATTTCATCTGAGTTTTTG 59.694 38.462 0.00 0.00 0.00 2.44
2043 2261 6.597672 TCAAACATTCACTCGGTGCTATATTT 59.402 34.615 0.00 0.00 32.98 1.40
2106 2324 1.069227 CGCAAAGTAGTTGAACTGGGC 60.069 52.381 8.33 3.61 39.87 5.36
2131 2349 6.238925 CGGAAAGGTAATCTTTGTTTCCTTGT 60.239 38.462 9.76 0.00 45.00 3.16
2132 2350 7.040961 CGGAAAGGTAATCTTTGTTTCCTTGTA 60.041 37.037 9.76 0.00 45.00 2.41
2183 2401 9.403110 CTATCTCAAAAGTTTTCATTTGTCTGG 57.597 33.333 0.00 0.00 38.90 3.86
2194 2412 4.464008 TCATTTGTCTGGAATAGGCCATC 58.536 43.478 5.01 0.00 37.30 3.51
2327 2555 3.165071 TGCTCTGGAATAGTGAGTGACA 58.835 45.455 0.00 0.00 0.00 3.58
2450 2678 1.271597 ACTGAAGGGCGCTTCAAGAAT 60.272 47.619 36.30 23.40 42.02 2.40
2474 2702 3.895232 ATACTCGATGTGAAGCACCTT 57.105 42.857 0.00 0.00 32.73 3.50
2495 2723 1.883021 GGGAGCACCAAAACCATCG 59.117 57.895 1.58 0.00 39.85 3.84
2522 2750 0.807275 CATCGTTCAGAGATGCGCCA 60.807 55.000 4.18 0.00 38.97 5.69
2543 2771 1.524849 GCGGGAGATGAGAAAGGGC 60.525 63.158 0.00 0.00 0.00 5.19
2563 2791 2.965831 GCAAGAAAGGGAAAGGAAAGGT 59.034 45.455 0.00 0.00 0.00 3.50
2573 2801 4.087182 GGAAAGGAAAGGTAAAGGGGAAG 58.913 47.826 0.00 0.00 0.00 3.46
2576 2804 1.006758 GGAAAGGTAAAGGGGAAGGGG 59.993 57.143 0.00 0.00 0.00 4.79
2620 2848 3.684413 AACAGACGTTGATGGAACACCTT 60.684 43.478 0.00 0.00 35.47 3.50
2642 2875 4.242475 TCGTAGTGTTTGTGCCAAGATAG 58.758 43.478 0.00 0.00 0.00 2.08
2663 2896 2.760634 TGCACGAAGAAGAGGCATTA 57.239 45.000 0.00 0.00 0.00 1.90
2706 2939 3.288809 TGCATCGAGATATCTTCGGTG 57.711 47.619 22.69 22.69 40.51 4.94
2754 3050 3.846588 AGACCAAGTGACCATCCTATGTT 59.153 43.478 0.00 0.00 0.00 2.71
2755 3051 5.030147 AGACCAAGTGACCATCCTATGTTA 58.970 41.667 0.00 0.00 0.00 2.41
2756 3052 5.099042 ACCAAGTGACCATCCTATGTTAC 57.901 43.478 0.00 0.00 0.00 2.50
2757 3053 4.119862 CCAAGTGACCATCCTATGTTACG 58.880 47.826 0.00 0.00 0.00 3.18
2758 3054 4.382685 CCAAGTGACCATCCTATGTTACGT 60.383 45.833 0.00 0.00 0.00 3.57
2814 3110 4.563184 CAGCTCCTTTACATTACGTCTGAC 59.437 45.833 0.00 0.00 0.00 3.51
2849 3145 3.733077 GCATTTCAGCTTCCCAGAATTCG 60.733 47.826 0.00 0.00 0.00 3.34
2850 3146 2.113860 TTCAGCTTCCCAGAATTCGG 57.886 50.000 0.00 4.68 0.00 4.30
2886 3182 3.620615 TGCTTGTGCACTTTTGACG 57.379 47.368 19.41 0.00 45.31 4.35
2887 3183 0.100325 TGCTTGTGCACTTTTGACGG 59.900 50.000 19.41 0.61 45.31 4.79
2903 3239 2.069273 GACGGTTTGACCTGATCAGTG 58.931 52.381 21.11 14.51 38.99 3.66
2907 3243 3.563808 CGGTTTGACCTGATCAGTGAAAA 59.436 43.478 21.11 14.13 38.99 2.29
2919 3255 1.000385 CAGTGAAAAGCATTTCGGCCA 60.000 47.619 2.24 0.00 46.47 5.36
2928 3264 1.337703 GCATTTCGGCCATGCAGAATA 59.662 47.619 18.96 0.00 45.50 1.75
2929 3265 2.859806 GCATTTCGGCCATGCAGAATAC 60.860 50.000 18.96 0.00 45.50 1.89
2933 3269 1.821241 CGGCCATGCAGAATACGTCG 61.821 60.000 2.24 0.00 0.00 5.12
3005 3341 3.941483 AGTAAAACCTGATTCTGCGATGG 59.059 43.478 0.00 0.00 0.00 3.51
3034 3631 0.034477 AGATAACAGGTTTGCCGGGG 60.034 55.000 2.18 0.00 40.50 5.73
3046 3643 2.272923 GCCGGGGCAAACAATAGTT 58.727 52.632 2.18 0.00 41.49 2.24
3070 3667 4.081420 CCTGAACTAGTACTTGATGGCAGT 60.081 45.833 11.43 0.00 0.00 4.40
3076 3673 1.936547 GTACTTGATGGCAGTAGCAGC 59.063 52.381 0.00 0.00 44.61 5.25
3079 3676 0.907486 TTGATGGCAGTAGCAGCTCT 59.093 50.000 0.00 0.00 44.61 4.09
3087 3684 2.286872 CAGTAGCAGCTCTTTCCATGG 58.713 52.381 4.97 4.97 0.00 3.66
3095 3692 1.670967 GCTCTTTCCATGGTTGCAAGC 60.671 52.381 21.51 21.51 0.00 4.01
3122 3719 4.156008 GTGGTATAAAGGAGCCAACAGTTG 59.844 45.833 6.28 6.28 32.26 3.16
3123 3720 4.042311 TGGTATAAAGGAGCCAACAGTTGA 59.958 41.667 15.36 0.00 0.00 3.18
3124 3721 4.636206 GGTATAAAGGAGCCAACAGTTGAG 59.364 45.833 15.36 6.16 0.00 3.02
3125 3722 1.322442 AAAGGAGCCAACAGTTGAGC 58.678 50.000 15.36 15.33 0.00 4.26
3126 3723 0.183492 AAGGAGCCAACAGTTGAGCA 59.817 50.000 21.65 0.00 31.84 4.26
3128 3725 0.524862 GGAGCCAACAGTTGAGCATG 59.475 55.000 21.65 5.99 31.84 4.06
3129 3726 1.527034 GAGCCAACAGTTGAGCATGA 58.473 50.000 21.65 0.00 31.84 3.07
3130 3727 1.881973 GAGCCAACAGTTGAGCATGAA 59.118 47.619 21.65 0.00 31.84 2.57
3131 3728 1.610522 AGCCAACAGTTGAGCATGAAC 59.389 47.619 21.65 0.00 29.99 3.18
3132 3729 1.337703 GCCAACAGTTGAGCATGAACA 59.662 47.619 15.36 0.00 33.40 3.18
3133 3730 2.029649 GCCAACAGTTGAGCATGAACAT 60.030 45.455 15.36 0.00 33.40 2.71
3134 3731 3.553508 GCCAACAGTTGAGCATGAACATT 60.554 43.478 15.36 0.00 33.40 2.71
3135 3732 3.985279 CCAACAGTTGAGCATGAACATTG 59.015 43.478 15.36 1.88 33.40 2.82
3136 3733 4.261698 CCAACAGTTGAGCATGAACATTGA 60.262 41.667 15.36 0.00 33.40 2.57
3137 3734 4.761235 ACAGTTGAGCATGAACATTGAG 57.239 40.909 0.00 0.00 33.40 3.02
3138 3735 3.057736 ACAGTTGAGCATGAACATTGAGC 60.058 43.478 0.00 0.00 33.40 4.26
3140 3737 3.762288 AGTTGAGCATGAACATTGAGCAT 59.238 39.130 0.00 0.00 33.40 3.79
3144 3746 4.103357 GAGCATGAACATTGAGCATGAAC 58.897 43.478 19.91 12.21 41.35 3.18
3171 3773 7.615582 TTAATTATCTGTTGCCTCTGTGAAG 57.384 36.000 0.00 0.00 0.00 3.02
3173 3775 2.533266 TCTGTTGCCTCTGTGAAGAC 57.467 50.000 0.00 0.00 0.00 3.01
3211 3813 3.564235 GCATTGAGCATGAACTTGACA 57.436 42.857 0.00 0.00 44.79 3.58
3212 3814 3.499048 GCATTGAGCATGAACTTGACAG 58.501 45.455 0.00 0.00 44.79 3.51
3223 3825 1.767759 ACTTGACAGTGCAGCCTTTT 58.232 45.000 0.00 0.00 0.00 2.27
3235 3837 3.243267 TGCAGCCTTTTCTACGGTTTTTC 60.243 43.478 0.00 0.00 0.00 2.29
3250 3852 5.629079 GGTTTTTCAACCCATCACTCTAG 57.371 43.478 0.00 0.00 46.38 2.43
3256 3858 2.166907 ACCCATCACTCTAGTCCTGG 57.833 55.000 0.00 0.00 0.00 4.45
3280 3888 1.577328 GCTGCTCAAACGCCTAGCAA 61.577 55.000 0.00 0.00 45.04 3.91
3299 3907 6.017400 AGCAAAATCTCACAAATACACAGG 57.983 37.500 0.00 0.00 0.00 4.00
3301 3909 6.072286 AGCAAAATCTCACAAATACACAGGAG 60.072 38.462 0.00 0.00 0.00 3.69
3302 3910 6.072508 GCAAAATCTCACAAATACACAGGAGA 60.073 38.462 0.00 0.00 36.02 3.71
3303 3911 7.301054 CAAAATCTCACAAATACACAGGAGAC 58.699 38.462 0.00 0.00 34.57 3.36
3305 3913 5.139435 TCTCACAAATACACAGGAGACAG 57.861 43.478 0.00 0.00 0.00 3.51
3306 3914 4.021104 TCTCACAAATACACAGGAGACAGG 60.021 45.833 0.00 0.00 0.00 4.00
3307 3915 3.901222 TCACAAATACACAGGAGACAGGA 59.099 43.478 0.00 0.00 0.00 3.86
3308 3916 3.997021 CACAAATACACAGGAGACAGGAC 59.003 47.826 0.00 0.00 0.00 3.85
3309 3917 3.904339 ACAAATACACAGGAGACAGGACT 59.096 43.478 0.00 0.00 0.00 3.85
3310 3918 5.047306 CACAAATACACAGGAGACAGGACTA 60.047 44.000 0.00 0.00 0.00 2.59
3311 3919 5.186021 ACAAATACACAGGAGACAGGACTAG 59.814 44.000 0.00 0.00 0.00 2.57
3516 4124 9.778993 GTGTGTTCTACATACGACTAAATCTAA 57.221 33.333 0.00 0.00 42.24 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 64 9.387123 TGTTCTTGTTTTACAAAAATTGTTTGC 57.613 25.926 0.54 0.00 42.22 3.68
257 280 7.076842 TCGCATTTTTCAAAAATTGTTTGGA 57.923 28.000 5.29 0.00 33.86 3.53
431 458 8.234887 TCCGTTTTTCTGTTTCTTTTTCTTTC 57.765 30.769 0.00 0.00 0.00 2.62
432 459 8.596271 TTCCGTTTTTCTGTTTCTTTTTCTTT 57.404 26.923 0.00 0.00 0.00 2.52
470 497 6.369340 TCCTTTTTGACCGGTTTTTCTTTTTC 59.631 34.615 9.42 0.00 0.00 2.29
474 501 5.408880 TTCCTTTTTGACCGGTTTTTCTT 57.591 34.783 9.42 0.00 0.00 2.52
513 541 1.074951 AGCCGGTTTTGGGAGAAGG 59.925 57.895 1.90 0.00 0.00 3.46
514 542 1.244019 CCAGCCGGTTTTGGGAGAAG 61.244 60.000 1.90 0.00 0.00 2.85
515 543 1.228429 CCAGCCGGTTTTGGGAGAA 60.228 57.895 1.90 0.00 0.00 2.87
516 544 2.434331 CCAGCCGGTTTTGGGAGA 59.566 61.111 1.90 0.00 0.00 3.71
517 545 2.478335 TAGCCAGCCGGTTTTGGGAG 62.478 60.000 19.10 0.00 34.96 4.30
527 555 1.756950 TACCAGACCTAGCCAGCCG 60.757 63.158 0.00 0.00 0.00 5.52
557 585 1.086696 CCCGCATCGCTAAATATGGG 58.913 55.000 0.00 0.00 36.20 4.00
565 593 1.301401 GCAATACCCCGCATCGCTA 60.301 57.895 0.00 0.00 0.00 4.26
566 594 2.591715 GCAATACCCCGCATCGCT 60.592 61.111 0.00 0.00 0.00 4.93
567 595 3.660111 GGCAATACCCCGCATCGC 61.660 66.667 0.00 0.00 0.00 4.58
576 604 1.654023 GAACGCACAGGGGCAATACC 61.654 60.000 0.00 0.00 37.93 2.73
577 605 1.800681 GAACGCACAGGGGCAATAC 59.199 57.895 0.00 0.00 0.00 1.89
578 606 1.743623 CGAACGCACAGGGGCAATA 60.744 57.895 0.00 0.00 0.00 1.90
579 607 3.055719 CGAACGCACAGGGGCAAT 61.056 61.111 0.00 0.00 0.00 3.56
584 612 4.351938 TCGACCGAACGCACAGGG 62.352 66.667 0.00 0.00 0.00 4.45
585 613 3.103911 GTCGACCGAACGCACAGG 61.104 66.667 3.51 0.00 0.00 4.00
586 614 1.282248 ATTGTCGACCGAACGCACAG 61.282 55.000 14.12 0.00 0.00 3.66
587 615 0.876777 AATTGTCGACCGAACGCACA 60.877 50.000 14.12 0.00 0.00 4.57
588 616 0.450482 CAATTGTCGACCGAACGCAC 60.450 55.000 14.12 0.00 0.00 5.34
589 617 1.561717 CCAATTGTCGACCGAACGCA 61.562 55.000 14.12 0.00 0.00 5.24
590 618 1.131826 CCAATTGTCGACCGAACGC 59.868 57.895 14.12 0.00 0.00 4.84
591 619 0.437295 GTCCAATTGTCGACCGAACG 59.563 55.000 14.12 0.00 0.00 3.95
592 620 0.437295 CGTCCAATTGTCGACCGAAC 59.563 55.000 14.12 2.12 0.00 3.95
593 621 1.286354 GCGTCCAATTGTCGACCGAA 61.286 55.000 14.12 1.35 0.00 4.30
594 622 1.735198 GCGTCCAATTGTCGACCGA 60.735 57.895 14.12 1.67 0.00 4.69
595 623 1.561717 TTGCGTCCAATTGTCGACCG 61.562 55.000 14.12 8.42 0.00 4.79
596 624 0.589223 TTTGCGTCCAATTGTCGACC 59.411 50.000 14.12 9.21 0.00 4.79
597 625 1.529438 TCTTTGCGTCCAATTGTCGAC 59.471 47.619 19.42 9.11 0.00 4.20
598 626 1.798223 CTCTTTGCGTCCAATTGTCGA 59.202 47.619 19.42 2.89 0.00 4.20
599 627 1.725931 GCTCTTTGCGTCCAATTGTCG 60.726 52.381 13.45 13.45 0.00 4.35
600 628 1.266718 TGCTCTTTGCGTCCAATTGTC 59.733 47.619 4.43 0.00 46.63 3.18
601 629 1.317613 TGCTCTTTGCGTCCAATTGT 58.682 45.000 4.43 0.00 46.63 2.71
602 630 2.642139 ATGCTCTTTGCGTCCAATTG 57.358 45.000 0.00 0.00 46.63 2.32
609 637 2.545952 CCCTATACGATGCTCTTTGCGT 60.546 50.000 0.00 0.00 46.63 5.24
610 638 2.061773 CCCTATACGATGCTCTTTGCG 58.938 52.381 0.00 0.00 46.63 4.85
611 639 3.113260 ACCCTATACGATGCTCTTTGC 57.887 47.619 0.00 0.00 43.25 3.68
612 640 5.007724 GGAAAACCCTATACGATGCTCTTTG 59.992 44.000 0.00 0.00 0.00 2.77
613 641 5.123936 GGAAAACCCTATACGATGCTCTTT 58.876 41.667 0.00 0.00 0.00 2.52
614 642 4.163458 TGGAAAACCCTATACGATGCTCTT 59.837 41.667 0.00 0.00 35.38 2.85
615 643 3.709653 TGGAAAACCCTATACGATGCTCT 59.290 43.478 0.00 0.00 35.38 4.09
616 644 4.067972 TGGAAAACCCTATACGATGCTC 57.932 45.455 0.00 0.00 35.38 4.26
617 645 4.497291 TTGGAAAACCCTATACGATGCT 57.503 40.909 0.00 0.00 35.38 3.79
618 646 5.411669 CCTATTGGAAAACCCTATACGATGC 59.588 44.000 0.00 0.00 32.60 3.91
619 647 6.765403 TCCTATTGGAAAACCCTATACGATG 58.235 40.000 0.00 0.00 39.87 3.84
620 648 7.569599 ATCCTATTGGAAAACCCTATACGAT 57.430 36.000 0.00 0.00 46.80 3.73
621 649 7.731688 AGTATCCTATTGGAAAACCCTATACGA 59.268 37.037 0.00 0.00 46.80 3.43
622 650 7.904205 AGTATCCTATTGGAAAACCCTATACG 58.096 38.462 0.00 0.00 46.80 3.06
642 670 3.447944 ACAGAGGAAAACGAGGGAGTATC 59.552 47.826 0.00 0.00 0.00 2.24
643 671 3.442076 ACAGAGGAAAACGAGGGAGTAT 58.558 45.455 0.00 0.00 0.00 2.12
644 672 2.824341 GACAGAGGAAAACGAGGGAGTA 59.176 50.000 0.00 0.00 0.00 2.59
645 673 1.619332 GACAGAGGAAAACGAGGGAGT 59.381 52.381 0.00 0.00 0.00 3.85
646 674 1.896465 AGACAGAGGAAAACGAGGGAG 59.104 52.381 0.00 0.00 0.00 4.30
647 675 2.011122 AGACAGAGGAAAACGAGGGA 57.989 50.000 0.00 0.00 0.00 4.20
648 676 2.417719 CAAGACAGAGGAAAACGAGGG 58.582 52.381 0.00 0.00 0.00 4.30
649 677 1.801178 GCAAGACAGAGGAAAACGAGG 59.199 52.381 0.00 0.00 0.00 4.63
650 678 2.478134 CAGCAAGACAGAGGAAAACGAG 59.522 50.000 0.00 0.00 0.00 4.18
651 679 2.102420 TCAGCAAGACAGAGGAAAACGA 59.898 45.455 0.00 0.00 0.00 3.85
652 680 2.483876 TCAGCAAGACAGAGGAAAACG 58.516 47.619 0.00 0.00 0.00 3.60
653 681 4.791974 CATTCAGCAAGACAGAGGAAAAC 58.208 43.478 0.00 0.00 0.00 2.43
654 682 3.254166 GCATTCAGCAAGACAGAGGAAAA 59.746 43.478 0.00 0.00 44.79 2.29
655 683 2.816087 GCATTCAGCAAGACAGAGGAAA 59.184 45.455 0.00 0.00 44.79 3.13
656 684 2.430465 GCATTCAGCAAGACAGAGGAA 58.570 47.619 0.00 0.00 44.79 3.36
657 685 1.673923 CGCATTCAGCAAGACAGAGGA 60.674 52.381 0.00 0.00 46.13 3.71
658 686 0.725686 CGCATTCAGCAAGACAGAGG 59.274 55.000 0.00 0.00 46.13 3.69
659 687 1.659601 CTCGCATTCAGCAAGACAGAG 59.340 52.381 0.00 0.00 46.13 3.35
660 688 1.273327 TCTCGCATTCAGCAAGACAGA 59.727 47.619 0.00 0.00 46.13 3.41
661 689 1.718396 TCTCGCATTCAGCAAGACAG 58.282 50.000 0.00 0.00 46.13 3.51
662 690 3.912899 TCTCGCATTCAGCAAGACA 57.087 47.368 0.00 0.00 46.13 3.41
664 692 1.270252 TGTGTCTCGCATTCAGCAAGA 60.270 47.619 0.00 0.00 46.13 3.02
665 693 1.128136 CTGTGTCTCGCATTCAGCAAG 59.872 52.381 0.00 0.00 46.13 4.01
666 694 1.150827 CTGTGTCTCGCATTCAGCAA 58.849 50.000 0.00 0.00 46.13 3.91
667 695 0.318120 TCTGTGTCTCGCATTCAGCA 59.682 50.000 0.00 0.00 46.13 4.41
668 696 1.392853 CTTCTGTGTCTCGCATTCAGC 59.607 52.381 0.00 0.00 40.87 4.26
669 697 2.951726 TCTTCTGTGTCTCGCATTCAG 58.048 47.619 0.00 0.00 0.00 3.02
670 698 3.385193 TTCTTCTGTGTCTCGCATTCA 57.615 42.857 0.00 0.00 0.00 2.57
671 699 3.743396 ACTTTCTTCTGTGTCTCGCATTC 59.257 43.478 0.00 0.00 0.00 2.67
672 700 3.733337 ACTTTCTTCTGTGTCTCGCATT 58.267 40.909 0.00 0.00 0.00 3.56
673 701 3.393089 ACTTTCTTCTGTGTCTCGCAT 57.607 42.857 0.00 0.00 0.00 4.73
674 702 2.890808 ACTTTCTTCTGTGTCTCGCA 57.109 45.000 0.00 0.00 0.00 5.10
675 703 3.385577 AGAACTTTCTTCTGTGTCTCGC 58.614 45.455 0.00 0.00 32.55 5.03
676 704 4.210120 CCAAGAACTTTCTTCTGTGTCTCG 59.790 45.833 1.04 0.00 45.23 4.04
677 705 4.513318 CCCAAGAACTTTCTTCTGTGTCTC 59.487 45.833 1.04 0.00 45.23 3.36
678 706 4.455606 CCCAAGAACTTTCTTCTGTGTCT 58.544 43.478 1.04 0.00 45.23 3.41
679 707 3.003793 GCCCAAGAACTTTCTTCTGTGTC 59.996 47.826 1.04 0.00 45.23 3.67
680 708 2.952310 GCCCAAGAACTTTCTTCTGTGT 59.048 45.455 1.04 0.00 45.23 3.72
681 709 2.294512 GGCCCAAGAACTTTCTTCTGTG 59.705 50.000 1.04 0.00 45.23 3.66
682 710 2.175715 AGGCCCAAGAACTTTCTTCTGT 59.824 45.455 0.00 0.00 45.23 3.41
683 711 2.555757 CAGGCCCAAGAACTTTCTTCTG 59.444 50.000 0.00 3.17 45.23 3.02
684 712 2.489802 CCAGGCCCAAGAACTTTCTTCT 60.490 50.000 0.00 0.00 45.23 2.85
685 713 1.889170 CCAGGCCCAAGAACTTTCTTC 59.111 52.381 0.00 0.00 45.23 2.87
687 715 0.853530 ACCAGGCCCAAGAACTTTCT 59.146 50.000 0.00 0.00 39.74 2.52
688 716 1.704641 AACCAGGCCCAAGAACTTTC 58.295 50.000 0.00 0.00 0.00 2.62
689 717 3.322191 TTAACCAGGCCCAAGAACTTT 57.678 42.857 0.00 0.00 0.00 2.66
690 718 3.542969 ATTAACCAGGCCCAAGAACTT 57.457 42.857 0.00 0.00 0.00 2.66
691 719 3.850173 TCTATTAACCAGGCCCAAGAACT 59.150 43.478 0.00 0.00 0.00 3.01
692 720 4.230745 TCTATTAACCAGGCCCAAGAAC 57.769 45.455 0.00 0.00 0.00 3.01
693 721 6.780198 ATATCTATTAACCAGGCCCAAGAA 57.220 37.500 0.00 0.00 0.00 2.52
694 722 7.023120 AGTATATCTATTAACCAGGCCCAAGA 58.977 38.462 0.00 0.00 0.00 3.02
695 723 7.038302 TGAGTATATCTATTAACCAGGCCCAAG 60.038 40.741 0.00 0.00 0.00 3.61
696 724 6.790461 TGAGTATATCTATTAACCAGGCCCAA 59.210 38.462 0.00 0.00 0.00 4.12
697 725 6.327781 TGAGTATATCTATTAACCAGGCCCA 58.672 40.000 0.00 0.00 0.00 5.36
698 726 6.869206 TGAGTATATCTATTAACCAGGCCC 57.131 41.667 0.00 0.00 0.00 5.80
699 727 7.852263 ACATGAGTATATCTATTAACCAGGCC 58.148 38.462 0.00 0.00 0.00 5.19
700 728 9.726438 AAACATGAGTATATCTATTAACCAGGC 57.274 33.333 0.00 0.00 0.00 4.85
721 749 6.398234 TGTTGTGGTTAGCATGTTAAACAT 57.602 33.333 20.97 0.00 39.91 2.71
722 750 5.836821 TGTTGTGGTTAGCATGTTAAACA 57.163 34.783 15.23 15.23 0.00 2.83
723 751 5.689961 CCTTGTTGTGGTTAGCATGTTAAAC 59.310 40.000 10.19 10.19 0.00 2.01
724 752 5.737635 GCCTTGTTGTGGTTAGCATGTTAAA 60.738 40.000 3.34 0.00 0.00 1.52
725 753 4.261825 GCCTTGTTGTGGTTAGCATGTTAA 60.262 41.667 0.00 0.00 0.00 2.01
766 794 0.609662 GCTTGGTGCCATGGTTGATT 59.390 50.000 14.67 0.00 35.15 2.57
768 796 3.776158 GCTTGGTGCCATGGTTGA 58.224 55.556 14.67 0.00 35.15 3.18
778 806 2.045536 GAGGGAGCTGGCTTGGTG 60.046 66.667 0.00 0.00 0.00 4.17
779 807 3.710722 CGAGGGAGCTGGCTTGGT 61.711 66.667 0.00 0.00 0.00 3.67
780 808 3.393970 TCGAGGGAGCTGGCTTGG 61.394 66.667 0.00 0.00 0.00 3.61
781 809 2.125350 GTCGAGGGAGCTGGCTTG 60.125 66.667 0.00 0.00 0.00 4.01
782 810 3.394836 GGTCGAGGGAGCTGGCTT 61.395 66.667 0.00 0.00 37.68 4.35
783 811 4.704103 TGGTCGAGGGAGCTGGCT 62.704 66.667 0.00 0.00 41.26 4.75
784 812 4.154347 CTGGTCGAGGGAGCTGGC 62.154 72.222 0.00 0.00 41.26 4.85
891 920 1.153429 GAGGAATTCGGGGTGGACG 60.153 63.158 0.00 0.00 0.00 4.79
922 951 2.092882 GTACTGGAAGCGGCGACAC 61.093 63.158 12.98 0.00 37.60 3.67
955 984 0.172803 GAAAGTTAGCGGCTCTCGGA 59.827 55.000 5.39 0.00 39.69 4.55
1114 1143 2.205074 CATGAAGTGGTGATACTCGCC 58.795 52.381 0.00 0.00 46.90 5.54
1149 1178 2.866156 GCTCCAAGAAAAAGCAAACCAC 59.134 45.455 0.00 0.00 36.06 4.16
1151 1180 2.866156 GTGCTCCAAGAAAAAGCAAACC 59.134 45.455 0.00 0.00 46.73 3.27
1152 1181 2.535574 CGTGCTCCAAGAAAAAGCAAAC 59.464 45.455 0.00 0.00 46.73 2.93
1153 1182 2.165437 ACGTGCTCCAAGAAAAAGCAAA 59.835 40.909 0.00 0.00 46.73 3.68
1154 1183 1.748493 ACGTGCTCCAAGAAAAAGCAA 59.252 42.857 0.00 0.00 46.73 3.91
1155 1184 1.333619 GACGTGCTCCAAGAAAAAGCA 59.666 47.619 0.00 0.00 43.40 3.91
1156 1185 1.604278 AGACGTGCTCCAAGAAAAAGC 59.396 47.619 0.00 0.00 36.56 3.51
1157 1186 2.614057 ACAGACGTGCTCCAAGAAAAAG 59.386 45.455 0.00 0.00 0.00 2.27
1221 1250 1.406180 GAAAGACTCGACCCCTAGAGC 59.594 57.143 0.00 0.00 37.99 4.09
1278 1307 2.770232 AGGCTCATCATCAGACATGTCA 59.230 45.455 27.02 8.51 0.00 3.58
1414 1443 8.332831 TTAGCAGCTATGGCACATGCTAAAAC 62.333 42.308 24.44 10.80 46.63 2.43
1440 1469 9.104965 GCAGTTGTTTGACATGGTATACTAATA 57.895 33.333 2.25 0.00 0.00 0.98
1441 1470 7.829211 AGCAGTTGTTTGACATGGTATACTAAT 59.171 33.333 2.25 0.00 0.00 1.73
1442 1471 7.165485 AGCAGTTGTTTGACATGGTATACTAA 58.835 34.615 2.25 0.00 0.00 2.24
1443 1472 6.707290 AGCAGTTGTTTGACATGGTATACTA 58.293 36.000 2.25 0.00 0.00 1.82
1444 1473 5.560724 AGCAGTTGTTTGACATGGTATACT 58.439 37.500 2.25 0.00 0.00 2.12
1470 1502 3.717400 TCAAATAGCTAGACCAGAGCG 57.283 47.619 0.00 0.00 44.98 5.03
1474 1506 6.451393 GGTAGTCATCAAATAGCTAGACCAG 58.549 44.000 0.00 0.00 0.00 4.00
1529 1572 6.662865 TTTGCCCAAATGTTTCAGATTCTA 57.337 33.333 0.00 0.00 0.00 2.10
1531 1574 6.806388 ATTTTGCCCAAATGTTTCAGATTC 57.194 33.333 0.00 0.00 33.47 2.52
1563 1611 8.407064 ACCATTGTTTCGTTTATGAGTTGTTAA 58.593 29.630 0.00 0.00 0.00 2.01
1567 1615 7.858382 TGTTACCATTGTTTCGTTTATGAGTTG 59.142 33.333 0.00 0.00 0.00 3.16
1610 1658 9.787532 CAGAAACAACTTCACTTCTTTGATTAA 57.212 29.630 0.00 0.00 36.40 1.40
1611 1659 8.405531 CCAGAAACAACTTCACTTCTTTGATTA 58.594 33.333 0.00 0.00 36.40 1.75
1612 1660 7.260603 CCAGAAACAACTTCACTTCTTTGATT 58.739 34.615 0.00 0.00 36.40 2.57
1614 1662 5.393027 GCCAGAAACAACTTCACTTCTTTGA 60.393 40.000 0.00 0.00 36.40 2.69
1615 1663 4.800471 GCCAGAAACAACTTCACTTCTTTG 59.200 41.667 0.00 0.00 36.40 2.77
1630 1678 3.744559 TGGAGTTGCGCCAGAAAC 58.255 55.556 4.18 1.88 36.11 2.78
1638 1686 2.345641 CGTCTATGTTTCTGGAGTTGCG 59.654 50.000 0.00 0.00 0.00 4.85
1642 1690 2.826128 TCTGCGTCTATGTTTCTGGAGT 59.174 45.455 0.00 0.00 0.00 3.85
1676 1724 7.008021 AGTTTGGGTATGAAGAAATGCAATT 57.992 32.000 0.00 0.00 38.98 2.32
1677 1725 6.610075 AGTTTGGGTATGAAGAAATGCAAT 57.390 33.333 0.00 0.00 0.00 3.56
1678 1726 7.716799 ATAGTTTGGGTATGAAGAAATGCAA 57.283 32.000 0.00 0.00 0.00 4.08
1679 1727 8.815565 TTATAGTTTGGGTATGAAGAAATGCA 57.184 30.769 0.00 0.00 0.00 3.96
1718 1773 8.033038 GCCTATCGGTTGTAGAATATAATGTGA 58.967 37.037 0.00 0.00 0.00 3.58
1738 1793 1.953559 TTTCGCTGGATGTGCCTATC 58.046 50.000 0.00 0.00 37.63 2.08
1809 1864 3.648067 TGGCTAAGATAGGACATTCTGGG 59.352 47.826 0.00 0.00 0.00 4.45
1816 1871 4.587262 TCGCTAAATGGCTAAGATAGGACA 59.413 41.667 0.00 0.00 0.00 4.02
1817 1872 5.135508 TCGCTAAATGGCTAAGATAGGAC 57.864 43.478 0.00 0.00 0.00 3.85
1822 1877 3.181461 ACAGCTCGCTAAATGGCTAAGAT 60.181 43.478 0.00 0.00 33.43 2.40
1832 1887 6.569179 AATCCTTTTTAACAGCTCGCTAAA 57.431 33.333 0.00 0.00 0.00 1.85
1955 2172 5.183140 GGAGAGATGAGCTCACTATTAGTCC 59.817 48.000 20.97 14.45 46.45 3.85
1997 2214 4.276678 TGAGCCTGAACAAAAACTCAGATG 59.723 41.667 0.68 0.00 41.38 2.90
2010 2228 3.364366 CGAGTGAATGTTTGAGCCTGAAC 60.364 47.826 0.00 0.00 0.00 3.18
2070 2288 8.789762 ACTACTTTGCGGTTCTGTATTTTATTT 58.210 29.630 0.00 0.00 0.00 1.40
2106 2324 5.959618 AGGAAACAAAGATTACCTTTCCG 57.040 39.130 0.00 0.00 42.88 4.30
2131 2349 9.109393 GTGCAAAGTTTCAAGTCAGGATATATA 57.891 33.333 0.00 0.00 0.00 0.86
2132 2350 7.831193 AGTGCAAAGTTTCAAGTCAGGATATAT 59.169 33.333 0.00 0.00 0.00 0.86
2183 2401 2.292845 GCTGCTTCTTGATGGCCTATTC 59.707 50.000 3.32 0.00 0.00 1.75
2194 2412 1.781555 CGGTGTACGCTGCTTCTTG 59.218 57.895 6.35 0.00 34.82 3.02
2215 2433 0.253044 TAGCTGGGATTGCCACAGAC 59.747 55.000 0.00 0.00 35.63 3.51
2327 2555 9.427821 AGTCTTTCCTGTATAGAGTTATCATGT 57.572 33.333 0.00 0.00 0.00 3.21
2450 2678 3.181479 GGTGCTTCACATCGAGTATACCA 60.181 47.826 0.00 0.00 35.86 3.25
2474 2702 2.733956 GATGGTTTTGGTGCTCCCATA 58.266 47.619 1.59 0.00 44.74 2.74
2482 2710 0.162933 CGACGACGATGGTTTTGGTG 59.837 55.000 0.00 0.00 42.66 4.17
2495 2723 1.128136 TCTCTGAACGATGACGACGAC 59.872 52.381 0.00 0.00 42.66 4.34
2522 2750 1.118838 CCTTTCTCATCTCCCGCTCT 58.881 55.000 0.00 0.00 0.00 4.09
2543 2771 6.239317 CCTTTACCTTTCCTTTCCCTTTCTTG 60.239 42.308 0.00 0.00 0.00 3.02
2563 2791 0.554112 CCCCTTCCCCTTCCCCTTTA 60.554 60.000 0.00 0.00 0.00 1.85
2573 2801 2.696504 CCTCCCTTCCCCTTCCCC 60.697 72.222 0.00 0.00 0.00 4.81
2576 2804 3.798511 CGGCCTCCCTTCCCCTTC 61.799 72.222 0.00 0.00 0.00 3.46
2633 2861 2.826428 TCTTCGTGCATCTATCTTGGC 58.174 47.619 0.00 0.00 0.00 4.52
2642 2875 1.661341 ATGCCTCTTCTTCGTGCATC 58.339 50.000 0.00 0.00 38.17 3.91
2648 2881 3.308323 GTCAGCTTAATGCCTCTTCTTCG 59.692 47.826 0.00 0.00 44.23 3.79
2663 2896 0.180406 ACGGTTCAAGGTGTCAGCTT 59.820 50.000 11.52 11.52 36.17 3.74
2736 3032 4.755411 ACGTAACATAGGATGGTCACTTG 58.245 43.478 0.00 0.00 33.60 3.16
2769 3065 6.573094 GCTGGAGGAAAAAGAAATACATGCTT 60.573 38.462 0.00 0.00 0.00 3.91
2773 3069 5.654209 GGAGCTGGAGGAAAAAGAAATACAT 59.346 40.000 0.00 0.00 0.00 2.29
2781 3077 4.398319 TGTAAAGGAGCTGGAGGAAAAAG 58.602 43.478 0.00 0.00 0.00 2.27
2782 3078 4.447138 TGTAAAGGAGCTGGAGGAAAAA 57.553 40.909 0.00 0.00 0.00 1.94
2787 3083 3.118738 ACGTAATGTAAAGGAGCTGGAGG 60.119 47.826 0.00 0.00 0.00 4.30
2814 3110 2.247637 TGAAATGCTCGTCGAGTAACG 58.752 47.619 22.61 0.00 43.92 3.18
2820 3116 1.350193 GAAGCTGAAATGCTCGTCGA 58.650 50.000 0.00 0.00 43.24 4.20
2824 3120 0.731417 CTGGGAAGCTGAAATGCTCG 59.269 55.000 0.00 0.00 43.24 5.03
2849 3145 1.824852 CACCCCAGAAGCCAAATAACC 59.175 52.381 0.00 0.00 0.00 2.85
2850 3146 1.204704 GCACCCCAGAAGCCAAATAAC 59.795 52.381 0.00 0.00 0.00 1.89
2881 3177 2.104111 ACTGATCAGGTCAAACCGTCAA 59.896 45.455 26.08 0.00 44.90 3.18
2882 3178 1.691976 ACTGATCAGGTCAAACCGTCA 59.308 47.619 26.08 0.00 44.90 4.35
2886 3182 4.557496 GCTTTTCACTGATCAGGTCAAACC 60.557 45.833 26.08 9.31 36.14 3.27
2887 3183 4.036734 TGCTTTTCACTGATCAGGTCAAAC 59.963 41.667 26.08 14.32 36.14 2.93
2903 3239 1.001624 GCATGGCCGAAATGCTTTTC 58.998 50.000 17.12 13.62 45.62 2.29
2919 3255 2.287915 GCCAAATCGACGTATTCTGCAT 59.712 45.455 0.00 0.00 0.00 3.96
2928 3264 4.379082 GGAAATAAACTGCCAAATCGACGT 60.379 41.667 0.00 0.00 0.00 4.34
2929 3265 4.095610 GGAAATAAACTGCCAAATCGACG 58.904 43.478 0.00 0.00 0.00 5.12
2933 3269 6.101997 CAGAAGGGAAATAAACTGCCAAATC 58.898 40.000 0.00 0.00 0.00 2.17
2963 3299 5.055642 ACTGATCAAATCACAATGCACAG 57.944 39.130 0.00 0.00 35.06 3.66
3005 3341 1.207329 ACCTGTTATCTCCGAGGTTGC 59.793 52.381 0.00 0.00 35.12 4.17
3010 3346 2.280628 GGCAAACCTGTTATCTCCGAG 58.719 52.381 0.00 0.00 0.00 4.63
3046 3643 4.093743 TGCCATCAAGTACTAGTTCAGGA 58.906 43.478 0.00 0.00 0.00 3.86
3054 3651 3.181475 GCTGCTACTGCCATCAAGTACTA 60.181 47.826 0.00 0.00 38.71 1.82
3055 3652 2.419297 GCTGCTACTGCCATCAAGTACT 60.419 50.000 0.00 0.00 38.71 2.73
3056 3653 1.936547 GCTGCTACTGCCATCAAGTAC 59.063 52.381 0.00 0.00 38.71 2.73
3070 3667 2.715046 CAACCATGGAAAGAGCTGCTA 58.285 47.619 21.47 0.00 0.00 3.49
3076 3673 1.401931 CGCTTGCAACCATGGAAAGAG 60.402 52.381 21.47 13.50 36.37 2.85
3079 3676 1.664873 CCGCTTGCAACCATGGAAA 59.335 52.632 21.47 6.26 36.37 3.13
3087 3684 0.393267 TATACCACCCCGCTTGCAAC 60.393 55.000 0.00 0.00 0.00 4.17
3095 3692 0.108019 GGCTCCTTTATACCACCCCG 59.892 60.000 0.00 0.00 0.00 5.73
3122 3719 4.103357 GTTCATGCTCAATGTTCATGCTC 58.897 43.478 10.74 5.15 37.93 4.26
3123 3720 3.762288 AGTTCATGCTCAATGTTCATGCT 59.238 39.130 10.74 3.67 37.93 3.79
3124 3721 4.106029 AGTTCATGCTCAATGTTCATGC 57.894 40.909 10.74 0.00 37.93 4.06
3125 3722 8.523523 TTAAAAGTTCATGCTCAATGTTCATG 57.476 30.769 9.78 9.78 39.02 3.07
3126 3723 9.715121 AATTAAAAGTTCATGCTCAATGTTCAT 57.285 25.926 0.00 0.00 37.56 2.57
3134 3731 9.844790 CAACAGATAATTAAAAGTTCATGCTCA 57.155 29.630 0.00 0.00 0.00 4.26
3135 3732 8.801913 GCAACAGATAATTAAAAGTTCATGCTC 58.198 33.333 0.00 0.00 0.00 4.26
3136 3733 7.761249 GGCAACAGATAATTAAAAGTTCATGCT 59.239 33.333 0.00 0.00 0.00 3.79
3137 3734 7.761249 AGGCAACAGATAATTAAAAGTTCATGC 59.239 33.333 0.00 0.00 41.41 4.06
3138 3735 9.294030 GAGGCAACAGATAATTAAAAGTTCATG 57.706 33.333 0.00 0.00 41.41 3.07
3140 3737 8.514594 CAGAGGCAACAGATAATTAAAAGTTCA 58.485 33.333 0.00 0.00 41.41 3.18
3144 3746 8.044060 TCACAGAGGCAACAGATAATTAAAAG 57.956 34.615 0.00 0.00 41.41 2.27
3171 3773 2.156697 GCTCTTTCTTCAGAACTGCGTC 59.843 50.000 0.00 0.00 33.13 5.19
3173 3775 2.138320 TGCTCTTTCTTCAGAACTGCG 58.862 47.619 0.00 0.00 33.13 5.18
3191 3793 3.057736 ACTGTCAAGTTCATGCTCAATGC 60.058 43.478 0.00 0.00 36.09 3.56
3211 3813 0.396811 ACCGTAGAAAAGGCTGCACT 59.603 50.000 0.50 0.00 0.00 4.40
3212 3814 1.235724 AACCGTAGAAAAGGCTGCAC 58.764 50.000 0.50 0.00 0.00 4.57
3235 3837 2.169352 CCAGGACTAGAGTGATGGGTTG 59.831 54.545 0.00 0.00 30.55 3.77
3250 3852 2.433318 GAGCAGCACGACCAGGAC 60.433 66.667 0.00 0.00 0.00 3.85
3256 3858 2.127609 GCGTTTGAGCAGCACGAC 60.128 61.111 7.16 0.00 35.93 4.34
3280 3888 6.533730 TGTCTCCTGTGTATTTGTGAGATTT 58.466 36.000 0.00 0.00 32.11 2.17
3299 3907 2.303311 AGTTTTGGGCTAGTCCTGTCTC 59.697 50.000 15.92 1.73 34.39 3.36
3301 3909 2.861147 AGTTTTGGGCTAGTCCTGTC 57.139 50.000 15.92 2.80 34.39 3.51
3302 3910 2.711547 AGAAGTTTTGGGCTAGTCCTGT 59.288 45.455 15.92 0.00 34.39 4.00
3303 3911 3.425162 AGAAGTTTTGGGCTAGTCCTG 57.575 47.619 15.92 0.00 34.39 3.86
3305 3913 2.229062 GCAAGAAGTTTTGGGCTAGTCC 59.771 50.000 6.37 6.37 0.00 3.85
3306 3914 2.884639 TGCAAGAAGTTTTGGGCTAGTC 59.115 45.455 0.00 0.00 0.00 2.59
3307 3915 2.944129 TGCAAGAAGTTTTGGGCTAGT 58.056 42.857 0.00 0.00 0.00 2.57
3308 3916 3.642705 GTTGCAAGAAGTTTTGGGCTAG 58.357 45.455 0.00 0.00 0.00 3.42
3309 3917 2.034053 CGTTGCAAGAAGTTTTGGGCTA 59.966 45.455 0.00 0.00 0.00 3.93
3310 3918 1.202405 CGTTGCAAGAAGTTTTGGGCT 60.202 47.619 0.00 0.00 0.00 5.19
3311 3919 1.202359 TCGTTGCAAGAAGTTTTGGGC 60.202 47.619 0.00 0.00 0.00 5.36
3441 4049 1.272781 CTCCTTCTGATCGAACGTGC 58.727 55.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.