Multiple sequence alignment - TraesCS3B01G175000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G175000 chr3B 100.000 3718 0 0 1 3718 176784607 176780890 0.000000e+00 6866.0
1 TraesCS3B01G175000 chr3B 94.863 2336 77 10 951 3260 176636807 176634489 0.000000e+00 3609.0
2 TraesCS3B01G175000 chr3B 82.907 1603 179 49 1028 2569 176860085 176858517 0.000000e+00 1354.0
3 TraesCS3B01G175000 chr3B 82.907 1603 179 49 1028 2569 176879836 176878268 0.000000e+00 1354.0
4 TraesCS3B01G175000 chr3B 88.252 715 75 3 1 714 176639983 176639277 0.000000e+00 846.0
5 TraesCS3B01G175000 chr3B 96.928 293 7 2 3269 3561 176634445 176634155 1.200000e-134 490.0
6 TraesCS3B01G175000 chr3B 98.101 158 3 0 3561 3718 340612171 340612328 3.660000e-70 276.0
7 TraesCS3B01G175000 chr3B 76.522 230 52 2 698 927 150122587 150122360 1.400000e-24 124.0
8 TraesCS3B01G175000 chr3B 80.000 125 8 6 840 956 176638023 176637908 3.980000e-10 76.8
9 TraesCS3B01G175000 chr3D 92.453 1855 121 13 1 1847 123518258 123516415 0.000000e+00 2632.0
10 TraesCS3B01G175000 chr3D 82.349 1490 173 51 1028 2479 123566966 123565529 0.000000e+00 1212.0
11 TraesCS3B01G175000 chr3D 79.616 677 111 19 216 871 516853011 516852341 9.410000e-126 460.0
12 TraesCS3B01G175000 chr3A 83.503 1576 158 48 1028 2569 131415394 131416901 0.000000e+00 1376.0
13 TraesCS3B01G175000 chr3A 87.190 968 60 24 1815 2761 131077515 131076591 0.000000e+00 1042.0
14 TraesCS3B01G175000 chr3A 90.708 678 33 11 927 1603 131084234 131083586 0.000000e+00 876.0
15 TraesCS3B01G175000 chr3A 91.327 392 17 3 3170 3561 131074759 131074385 1.530000e-143 520.0
16 TraesCS3B01G175000 chr3A 89.754 244 13 7 1591 1823 131081231 131080989 6.030000e-78 302.0
17 TraesCS3B01G175000 chr3A 87.831 189 20 3 1 188 422994035 422994221 6.250000e-53 219.0
18 TraesCS3B01G175000 chr3A 86.957 115 8 1 2856 2963 131074980 131074866 5.040000e-24 122.0
19 TraesCS3B01G175000 chr2D 79.564 734 125 11 216 927 43276000 43276730 5.540000e-138 501.0
20 TraesCS3B01G175000 chr2D 79.217 741 122 22 196 913 164537768 164538499 1.550000e-133 486.0
21 TraesCS3B01G175000 chr4A 81.145 594 87 12 233 807 158179296 158178709 1.570000e-123 453.0
22 TraesCS3B01G175000 chr4D 84.154 467 72 2 227 691 108227474 108227008 5.660000e-123 451.0
23 TraesCS3B01G175000 chr4D 87.097 186 23 1 4 188 297071190 297071005 3.760000e-50 209.0
24 TraesCS3B01G175000 chr4D 86.772 189 20 5 1 188 108204549 108204733 4.870000e-49 206.0
25 TraesCS3B01G175000 chr1A 82.731 498 79 7 196 690 256951170 256951663 1.590000e-118 436.0
26 TraesCS3B01G175000 chr5B 81.855 496 81 8 198 689 508684886 508685376 3.460000e-110 409.0
27 TraesCS3B01G175000 chr5B 98.101 158 3 0 3561 3718 268469707 268469550 3.660000e-70 276.0
28 TraesCS3B01G175000 chr7B 76.471 663 125 15 287 927 104978294 104978947 7.700000e-87 331.0
29 TraesCS3B01G175000 chr7B 98.101 158 3 0 3561 3718 106745398 106745555 3.660000e-70 276.0
30 TraesCS3B01G175000 chr7B 98.101 158 3 0 3561 3718 298598707 298598550 3.660000e-70 276.0
31 TraesCS3B01G175000 chr4B 98.101 158 3 0 3561 3718 141608920 141608763 3.660000e-70 276.0
32 TraesCS3B01G175000 chr4B 98.101 158 3 0 3561 3718 335694052 335693895 3.660000e-70 276.0
33 TraesCS3B01G175000 chr4B 98.089 157 3 0 3561 3717 234354315 234354471 1.320000e-69 274.0
34 TraesCS3B01G175000 chr4B 97.468 158 4 0 3561 3718 582045105 582045262 1.700000e-68 270.0
35 TraesCS3B01G175000 chrUn 97.468 158 4 0 3561 3718 240142439 240142596 1.700000e-68 270.0
36 TraesCS3B01G175000 chrUn 85.507 138 16 3 3426 3561 89691133 89690998 1.390000e-29 141.0
37 TraesCS3B01G175000 chr2B 78.036 387 66 14 1138 1518 16891830 16892203 3.740000e-55 226.0
38 TraesCS3B01G175000 chr2B 87.895 190 23 0 2 191 511165039 511164850 1.340000e-54 224.0
39 TraesCS3B01G175000 chr2B 86.631 187 20 3 1 186 528787277 528787459 6.300000e-48 202.0
40 TraesCS3B01G175000 chr2A 78.093 388 63 17 1144 1516 11904109 11903729 3.740000e-55 226.0
41 TraesCS3B01G175000 chr2A 86.170 188 24 2 1 188 77243072 77243257 6.300000e-48 202.0
42 TraesCS3B01G175000 chr2A 76.250 240 41 8 692 927 728063486 728063259 3.030000e-21 113.0
43 TraesCS3B01G175000 chr5D 85.938 192 25 2 1 191 519215262 519215072 1.750000e-48 204.0
44 TraesCS3B01G175000 chr5D 81.938 227 27 6 1400 1612 391854699 391854473 2.950000e-41 180.0
45 TraesCS3B01G175000 chr1D 86.316 190 23 3 1 188 332971734 332971546 1.750000e-48 204.0
46 TraesCS3B01G175000 chr7D 92.593 135 10 0 3427 3561 77183351 77183217 1.050000e-45 195.0
47 TraesCS3B01G175000 chr7A 91.176 136 12 0 3426 3561 81004404 81004269 6.340000e-43 185.0
48 TraesCS3B01G175000 chr7A 84.058 138 18 3 3426 3561 11435089 11434954 3.010000e-26 130.0
49 TraesCS3B01G175000 chr6B 79.870 154 29 2 1700 1852 25571634 25571786 1.090000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G175000 chr3B 176780890 176784607 3717 True 6866.00 6866 100.00000 1 3718 1 chr3B.!!$R2 3717
1 TraesCS3B01G175000 chr3B 176858517 176860085 1568 True 1354.00 1354 82.90700 1028 2569 1 chr3B.!!$R3 1541
2 TraesCS3B01G175000 chr3B 176878268 176879836 1568 True 1354.00 1354 82.90700 1028 2569 1 chr3B.!!$R4 1541
3 TraesCS3B01G175000 chr3B 176634155 176639983 5828 True 1255.45 3609 90.01075 1 3561 4 chr3B.!!$R5 3560
4 TraesCS3B01G175000 chr3D 123516415 123518258 1843 True 2632.00 2632 92.45300 1 1847 1 chr3D.!!$R1 1846
5 TraesCS3B01G175000 chr3D 123565529 123566966 1437 True 1212.00 1212 82.34900 1028 2479 1 chr3D.!!$R2 1451
6 TraesCS3B01G175000 chr3D 516852341 516853011 670 True 460.00 460 79.61600 216 871 1 chr3D.!!$R3 655
7 TraesCS3B01G175000 chr3A 131415394 131416901 1507 False 1376.00 1376 83.50300 1028 2569 1 chr3A.!!$F1 1541
8 TraesCS3B01G175000 chr3A 131074385 131084234 9849 True 572.40 1042 89.18720 927 3561 5 chr3A.!!$R1 2634
9 TraesCS3B01G175000 chr2D 43276000 43276730 730 False 501.00 501 79.56400 216 927 1 chr2D.!!$F1 711
10 TraesCS3B01G175000 chr2D 164537768 164538499 731 False 486.00 486 79.21700 196 913 1 chr2D.!!$F2 717
11 TraesCS3B01G175000 chr4A 158178709 158179296 587 True 453.00 453 81.14500 233 807 1 chr4A.!!$R1 574
12 TraesCS3B01G175000 chr7B 104978294 104978947 653 False 331.00 331 76.47100 287 927 1 chr7B.!!$F1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 622 0.032815 TGACAAGGTCGATGCGTCAA 59.967 50.0 6.75 0.0 33.86 3.18 F
1017 3265 0.390124 CACAAGCCACAAGCCACAAT 59.610 50.0 0.00 0.0 45.47 2.71 F
1548 3835 0.036388 CCTCTTAACGCCAGCTTGGA 60.036 55.0 6.40 0.0 40.96 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 3835 0.600255 GAACCACTGCAGCTGTACGT 60.600 55.000 15.27 8.24 0.00 3.57 R
1936 10139 2.187073 GCTTGATCAGCCCCTGTTG 58.813 57.895 0.00 0.00 43.65 3.33 R
3295 13113 1.075374 ACTGCACTTGCCCCTTATTGA 59.925 47.619 0.00 0.00 41.18 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.983720 CAGGTCGAGTTTATATGAAATCCGT 59.016 40.000 2.54 0.00 0.00 4.69
81 82 8.687242 TGGTTTGAGTTGTTGTGAAAATGTATA 58.313 29.630 0.00 0.00 0.00 1.47
86 87 4.688511 TGTTGTGAAAATGTATACGGCC 57.311 40.909 0.00 0.00 0.00 6.13
114 115 3.474570 GGCTGTCTCCCGCATCCT 61.475 66.667 0.00 0.00 0.00 3.24
120 121 1.612146 TCTCCCGCATCCTTGTCCA 60.612 57.895 0.00 0.00 0.00 4.02
188 190 2.825836 GCCGTTGGAGATGCCCTG 60.826 66.667 0.00 0.00 34.97 4.45
209 212 6.407525 CCCTGACTTTTGGTTGGATGTTTTTA 60.408 38.462 0.00 0.00 0.00 1.52
213 216 8.314751 TGACTTTTGGTTGGATGTTTTTAGAAA 58.685 29.630 0.00 0.00 0.00 2.52
214 217 9.325198 GACTTTTGGTTGGATGTTTTTAGAAAT 57.675 29.630 0.00 0.00 0.00 2.17
225 228 8.966868 GGATGTTTTTAGAAATGATCCAGGTAA 58.033 33.333 11.80 0.00 37.00 2.85
336 341 0.684805 CAACTCCTCCCGCTACCTCT 60.685 60.000 0.00 0.00 0.00 3.69
338 343 1.227664 CTCCTCCCGCTACCTCTGA 59.772 63.158 0.00 0.00 0.00 3.27
391 396 0.942410 GGCGCACTTGTGTCGTTCTA 60.942 55.000 10.83 0.00 0.00 2.10
393 398 2.256174 GCGCACTTGTGTCGTTCTATA 58.744 47.619 0.30 0.00 0.00 1.31
453 460 2.614481 GGACCAGTGGACGATTTTAGCA 60.614 50.000 18.40 0.00 0.00 3.49
459 466 3.071479 GTGGACGATTTTAGCAGTGGAA 58.929 45.455 0.00 0.00 0.00 3.53
567 574 1.966451 GAAGGGAGGTGGCGTTGTG 60.966 63.158 0.00 0.00 0.00 3.33
571 578 2.203153 GAGGTGGCGTTGTGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
615 622 0.032815 TGACAAGGTCGATGCGTCAA 59.967 50.000 6.75 0.00 33.86 3.18
618 625 2.927477 GACAAGGTCGATGCGTCAATAA 59.073 45.455 6.75 0.00 0.00 1.40
624 631 3.124636 GGTCGATGCGTCAATAACTGTTT 59.875 43.478 6.75 0.00 0.00 2.83
633 640 6.017523 TGCGTCAATAACTGTTTTGAAGATGA 60.018 34.615 22.01 6.80 34.55 2.92
649 656 1.330655 ATGAATCGCTGGGAGACGGT 61.331 55.000 0.00 0.00 0.00 4.83
667 674 3.760035 GGCGGCGACCTCTGAGAA 61.760 66.667 12.98 0.00 0.00 2.87
707 714 3.411517 CTGGTTGGGGCCTCCGAT 61.412 66.667 0.00 0.00 38.76 4.18
728 735 6.765989 CCGATTTCAGATGTTATCCTTTGGTA 59.234 38.462 0.00 0.00 0.00 3.25
732 739 9.872684 ATTTCAGATGTTATCCTTTGGTATGAT 57.127 29.630 0.00 0.00 0.00 2.45
754 761 6.256975 TGATGTCTATTTGTTATTCGGTTCGG 59.743 38.462 0.00 0.00 0.00 4.30
781 788 2.641305 GGCATCTCTTCATCAAGCAGT 58.359 47.619 0.00 0.00 0.00 4.40
790 797 9.896645 ATCTCTTCATCAAGCAGTTAGAAATAA 57.103 29.630 0.00 0.00 0.00 1.40
814 821 4.379708 CGACAGATGTTGCCAAAATGATGA 60.380 41.667 0.00 0.00 0.00 2.92
882 2016 9.903682 ATAACTAATAAAATGACTGCATGCATC 57.096 29.630 22.97 19.75 34.26 3.91
883 2017 7.337480 ACTAATAAAATGACTGCATGCATCA 57.663 32.000 22.97 24.26 34.26 3.07
885 2019 8.418662 ACTAATAAAATGACTGCATGCATCATT 58.581 29.630 31.19 31.19 43.29 2.57
888 2022 3.990318 ATGACTGCATGCATCATTCAG 57.010 42.857 26.42 16.04 40.07 3.02
902 2036 4.655762 TCATTCAGAATACAGAGACCGG 57.344 45.455 0.00 0.00 0.00 5.28
903 2037 4.278310 TCATTCAGAATACAGAGACCGGA 58.722 43.478 9.46 0.00 0.00 5.14
904 2038 4.895889 TCATTCAGAATACAGAGACCGGAT 59.104 41.667 9.46 0.00 0.00 4.18
966 3214 2.693591 CCCTACTGAGAATCGTAAGCCA 59.306 50.000 0.00 0.00 38.61 4.75
1017 3265 0.390124 CACAAGCCACAAGCCACAAT 59.610 50.000 0.00 0.00 45.47 2.71
1067 3315 1.376037 GAGCGCTACCAGGCTGTTT 60.376 57.895 11.50 2.21 40.16 2.83
1457 3729 2.357517 CGCACAACGGGAGCTTCT 60.358 61.111 0.00 0.00 38.44 2.85
1548 3835 0.036388 CCTCTTAACGCCAGCTTGGA 60.036 55.000 6.40 0.00 40.96 3.53
1866 10020 1.927895 GAGGTACCTCGTCAGCAATG 58.072 55.000 25.83 0.00 33.06 2.82
1867 10021 0.537188 AGGTACCTCGTCAGCAATGG 59.463 55.000 9.21 0.00 0.00 3.16
1936 10139 3.063510 TGATCTAGCTATGGCAATGGC 57.936 47.619 0.07 0.07 40.44 4.40
1942 10145 0.103572 GCTATGGCAATGGCAACAGG 59.896 55.000 14.81 5.54 44.95 4.00
1980 10183 1.002251 GCGACAAATTTCGTGGTTCCA 60.002 47.619 1.82 0.00 41.26 3.53
2030 10233 0.955919 GTTCTCGCCTTGTTCCCCAG 60.956 60.000 0.00 0.00 0.00 4.45
2706 10958 5.299782 AGTTACAAAACCAGCGGATAAAACA 59.700 36.000 1.50 0.00 36.15 2.83
2721 10973 8.268738 GCGGATAAAACATTTTTATGCTGATTC 58.731 33.333 16.19 1.49 32.69 2.52
2984 12760 6.929606 AGTAACTCTCACAGGTAAAATGACAC 59.070 38.462 0.00 0.00 0.00 3.67
3064 12840 4.462483 CCCTGCTTCAAACATAAGGCTTAA 59.538 41.667 11.59 0.00 0.00 1.85
3080 12856 6.664428 AGGCTTAATTAGGTTTCTGCAAAA 57.336 33.333 0.00 0.00 0.00 2.44
3082 12858 7.679783 AGGCTTAATTAGGTTTCTGCAAAAAT 58.320 30.769 0.00 0.00 0.00 1.82
3146 12922 7.677454 TCATATCATATCTTGCGCTCAATTT 57.323 32.000 9.73 0.00 0.00 1.82
3295 13113 2.435372 TTGCAGTTCAGAACCTTGGT 57.565 45.000 9.85 0.00 0.00 3.67
3317 13135 1.839424 ATAAGGGGCAAGTGCAGTTC 58.161 50.000 3.08 0.00 44.36 3.01
3321 13139 1.228245 GGGCAAGTGCAGTTCAGGA 60.228 57.895 3.08 0.00 44.36 3.86
3572 13445 2.989909 CACCAGCATTGATAGGTGTGA 58.010 47.619 12.49 0.00 44.95 3.58
3573 13446 2.941064 CACCAGCATTGATAGGTGTGAG 59.059 50.000 12.49 0.00 44.95 3.51
3574 13447 2.573462 ACCAGCATTGATAGGTGTGAGT 59.427 45.455 0.00 0.00 32.04 3.41
3575 13448 2.941064 CCAGCATTGATAGGTGTGAGTG 59.059 50.000 0.00 0.00 32.85 3.51
3576 13449 3.369787 CCAGCATTGATAGGTGTGAGTGA 60.370 47.826 0.00 0.00 32.85 3.41
3577 13450 4.256110 CAGCATTGATAGGTGTGAGTGAA 58.744 43.478 0.00 0.00 0.00 3.18
3578 13451 4.093998 CAGCATTGATAGGTGTGAGTGAAC 59.906 45.833 0.00 0.00 0.00 3.18
3579 13452 4.002982 GCATTGATAGGTGTGAGTGAACA 58.997 43.478 0.00 0.00 0.00 3.18
3580 13453 4.455533 GCATTGATAGGTGTGAGTGAACAA 59.544 41.667 0.00 0.00 0.00 2.83
3581 13454 5.391310 GCATTGATAGGTGTGAGTGAACAAG 60.391 44.000 0.00 0.00 0.00 3.16
3582 13455 4.955811 TGATAGGTGTGAGTGAACAAGT 57.044 40.909 0.00 0.00 0.00 3.16
3583 13456 4.883083 TGATAGGTGTGAGTGAACAAGTC 58.117 43.478 0.00 0.00 0.00 3.01
3584 13457 2.622064 AGGTGTGAGTGAACAAGTCC 57.378 50.000 0.00 0.00 0.00 3.85
3585 13458 1.202533 AGGTGTGAGTGAACAAGTCCG 60.203 52.381 0.00 0.00 0.00 4.79
3586 13459 1.217882 GTGTGAGTGAACAAGTCCGG 58.782 55.000 0.00 0.00 0.00 5.14
3587 13460 0.828022 TGTGAGTGAACAAGTCCGGT 59.172 50.000 0.00 0.00 0.00 5.28
3588 13461 2.033372 TGTGAGTGAACAAGTCCGGTA 58.967 47.619 0.00 0.00 0.00 4.02
3589 13462 2.223876 TGTGAGTGAACAAGTCCGGTAC 60.224 50.000 0.00 0.00 0.00 3.34
3590 13463 1.342174 TGAGTGAACAAGTCCGGTACC 59.658 52.381 0.16 0.16 0.00 3.34
3591 13464 1.342174 GAGTGAACAAGTCCGGTACCA 59.658 52.381 13.54 0.00 0.00 3.25
3592 13465 1.764134 AGTGAACAAGTCCGGTACCAA 59.236 47.619 13.54 0.00 0.00 3.67
3593 13466 2.370849 AGTGAACAAGTCCGGTACCAAT 59.629 45.455 13.54 0.00 0.00 3.16
3594 13467 3.143728 GTGAACAAGTCCGGTACCAATT 58.856 45.455 13.54 0.00 0.00 2.32
3595 13468 3.187842 GTGAACAAGTCCGGTACCAATTC 59.812 47.826 13.54 4.98 0.00 2.17
3596 13469 2.484742 ACAAGTCCGGTACCAATTCC 57.515 50.000 13.54 0.00 0.00 3.01
3597 13470 1.700739 ACAAGTCCGGTACCAATTCCA 59.299 47.619 13.54 0.00 0.00 3.53
3598 13471 2.081462 CAAGTCCGGTACCAATTCCAC 58.919 52.381 13.54 0.00 0.00 4.02
3599 13472 1.652947 AGTCCGGTACCAATTCCACT 58.347 50.000 13.54 0.85 0.00 4.00
3600 13473 2.823959 AGTCCGGTACCAATTCCACTA 58.176 47.619 13.54 0.00 0.00 2.74
3601 13474 3.381335 AGTCCGGTACCAATTCCACTAT 58.619 45.455 13.54 0.00 0.00 2.12
3602 13475 3.778629 AGTCCGGTACCAATTCCACTATT 59.221 43.478 13.54 0.00 0.00 1.73
3603 13476 4.124970 GTCCGGTACCAATTCCACTATTC 58.875 47.826 13.54 0.00 0.00 1.75
3604 13477 4.035112 TCCGGTACCAATTCCACTATTCT 58.965 43.478 13.54 0.00 0.00 2.40
3605 13478 4.472108 TCCGGTACCAATTCCACTATTCTT 59.528 41.667 13.54 0.00 0.00 2.52
3606 13479 5.045432 TCCGGTACCAATTCCACTATTCTTT 60.045 40.000 13.54 0.00 0.00 2.52
3607 13480 5.296035 CCGGTACCAATTCCACTATTCTTTC 59.704 44.000 13.54 0.00 0.00 2.62
3608 13481 5.878116 CGGTACCAATTCCACTATTCTTTCA 59.122 40.000 13.54 0.00 0.00 2.69
3609 13482 6.542370 CGGTACCAATTCCACTATTCTTTCAT 59.458 38.462 13.54 0.00 0.00 2.57
3610 13483 7.067008 CGGTACCAATTCCACTATTCTTTCATT 59.933 37.037 13.54 0.00 0.00 2.57
3611 13484 8.749354 GGTACCAATTCCACTATTCTTTCATTT 58.251 33.333 7.15 0.00 0.00 2.32
3612 13485 9.788960 GTACCAATTCCACTATTCTTTCATTTC 57.211 33.333 0.00 0.00 0.00 2.17
3613 13486 8.421249 ACCAATTCCACTATTCTTTCATTTCA 57.579 30.769 0.00 0.00 0.00 2.69
3614 13487 9.039165 ACCAATTCCACTATTCTTTCATTTCAT 57.961 29.630 0.00 0.00 0.00 2.57
3627 13500 9.611284 TTCTTTCATTTCATATTGAGTGAAACG 57.389 29.630 12.29 0.00 45.27 3.60
3628 13501 8.236586 TCTTTCATTTCATATTGAGTGAAACGG 58.763 33.333 12.29 1.02 45.27 4.44
3629 13502 6.435430 TCATTTCATATTGAGTGAAACGGG 57.565 37.500 3.69 0.00 45.27 5.28
3630 13503 6.176896 TCATTTCATATTGAGTGAAACGGGA 58.823 36.000 3.69 0.99 45.27 5.14
3631 13504 6.828273 TCATTTCATATTGAGTGAAACGGGAT 59.172 34.615 3.69 0.00 45.27 3.85
3632 13505 7.990314 TCATTTCATATTGAGTGAAACGGGATA 59.010 33.333 3.69 0.00 45.27 2.59
3633 13506 7.548196 TTTCATATTGAGTGAAACGGGATAC 57.452 36.000 0.00 0.00 45.86 2.24
3634 13507 6.228616 TCATATTGAGTGAAACGGGATACA 57.771 37.500 0.00 0.00 45.86 2.29
3635 13508 6.826668 TCATATTGAGTGAAACGGGATACAT 58.173 36.000 0.00 0.00 45.86 2.29
3636 13509 6.929049 TCATATTGAGTGAAACGGGATACATC 59.071 38.462 0.00 0.00 45.86 3.06
3637 13510 3.536956 TGAGTGAAACGGGATACATCC 57.463 47.619 0.00 0.00 45.86 3.51
3638 13511 3.104512 TGAGTGAAACGGGATACATCCT 58.895 45.455 8.14 0.00 46.35 3.24
3639 13512 3.132289 TGAGTGAAACGGGATACATCCTC 59.868 47.826 8.14 0.00 46.35 3.71
3640 13513 3.104512 AGTGAAACGGGATACATCCTCA 58.895 45.455 8.14 1.61 46.35 3.86
3641 13514 3.517901 AGTGAAACGGGATACATCCTCAA 59.482 43.478 8.14 0.00 46.35 3.02
3642 13515 3.621715 GTGAAACGGGATACATCCTCAAC 59.378 47.826 8.14 0.00 46.35 3.18
3643 13516 3.517901 TGAAACGGGATACATCCTCAACT 59.482 43.478 8.14 0.00 46.35 3.16
3644 13517 4.019681 TGAAACGGGATACATCCTCAACTT 60.020 41.667 8.14 0.00 46.35 2.66
3645 13518 4.569719 AACGGGATACATCCTCAACTTT 57.430 40.909 8.14 0.00 46.35 2.66
3646 13519 5.687166 AACGGGATACATCCTCAACTTTA 57.313 39.130 8.14 0.00 46.35 1.85
3647 13520 5.277857 ACGGGATACATCCTCAACTTTAG 57.722 43.478 8.14 0.00 46.35 1.85
3648 13521 4.101119 ACGGGATACATCCTCAACTTTAGG 59.899 45.833 8.14 0.00 46.35 2.69
3649 13522 4.344102 CGGGATACATCCTCAACTTTAGGA 59.656 45.833 8.14 0.00 46.96 2.94
3650 13523 5.163343 CGGGATACATCCTCAACTTTAGGAA 60.163 44.000 8.14 0.00 46.06 3.36
3651 13524 6.631766 CGGGATACATCCTCAACTTTAGGAAA 60.632 42.308 8.14 0.00 46.06 3.13
3652 13525 7.116736 GGGATACATCCTCAACTTTAGGAAAA 58.883 38.462 8.14 0.00 46.06 2.29
3653 13526 7.283354 GGGATACATCCTCAACTTTAGGAAAAG 59.717 40.741 8.14 0.00 46.06 2.27
3654 13527 7.283354 GGATACATCCTCAACTTTAGGAAAAGG 59.717 40.741 0.72 0.00 46.06 3.11
3655 13528 5.953571 ACATCCTCAACTTTAGGAAAAGGT 58.046 37.500 0.00 0.00 46.06 3.50
3656 13529 7.086685 ACATCCTCAACTTTAGGAAAAGGTA 57.913 36.000 0.00 0.00 46.06 3.08
3657 13530 7.523415 ACATCCTCAACTTTAGGAAAAGGTAA 58.477 34.615 0.00 0.00 46.06 2.85
3658 13531 7.447545 ACATCCTCAACTTTAGGAAAAGGTAAC 59.552 37.037 0.00 0.00 46.06 2.50
3659 13532 7.145474 TCCTCAACTTTAGGAAAAGGTAACT 57.855 36.000 3.19 0.00 45.36 2.24
3661 13534 7.649057 CCTCAACTTTAGGAAAAGGTAACTTG 58.351 38.462 0.00 0.00 46.95 3.16
3662 13535 7.255486 CCTCAACTTTAGGAAAAGGTAACTTGG 60.255 40.741 0.00 0.00 46.95 3.61
3682 13555 9.533831 AACTTGGTATTGTTTATCTCATTTCCT 57.466 29.630 0.00 0.00 0.00 3.36
3686 13559 9.832445 TGGTATTGTTTATCTCATTTCCTACTC 57.168 33.333 0.00 0.00 0.00 2.59
3687 13560 9.832445 GGTATTGTTTATCTCATTTCCTACTCA 57.168 33.333 0.00 0.00 0.00 3.41
3689 13562 8.738645 ATTGTTTATCTCATTTCCTACTCACC 57.261 34.615 0.00 0.00 0.00 4.02
3690 13563 7.496346 TGTTTATCTCATTTCCTACTCACCT 57.504 36.000 0.00 0.00 0.00 4.00
3691 13564 7.918076 TGTTTATCTCATTTCCTACTCACCTT 58.082 34.615 0.00 0.00 0.00 3.50
3692 13565 8.383175 TGTTTATCTCATTTCCTACTCACCTTT 58.617 33.333 0.00 0.00 0.00 3.11
3693 13566 8.669243 GTTTATCTCATTTCCTACTCACCTTTG 58.331 37.037 0.00 0.00 0.00 2.77
3694 13567 4.579869 TCTCATTTCCTACTCACCTTTGC 58.420 43.478 0.00 0.00 0.00 3.68
3695 13568 4.287067 TCTCATTTCCTACTCACCTTTGCT 59.713 41.667 0.00 0.00 0.00 3.91
3696 13569 4.579869 TCATTTCCTACTCACCTTTGCTC 58.420 43.478 0.00 0.00 0.00 4.26
3697 13570 2.743636 TTCCTACTCACCTTTGCTCG 57.256 50.000 0.00 0.00 0.00 5.03
3698 13571 1.919240 TCCTACTCACCTTTGCTCGA 58.081 50.000 0.00 0.00 0.00 4.04
3699 13572 1.819288 TCCTACTCACCTTTGCTCGAG 59.181 52.381 8.45 8.45 0.00 4.04
3700 13573 1.546476 CCTACTCACCTTTGCTCGAGT 59.454 52.381 15.13 0.00 41.45 4.18
3701 13574 2.416162 CCTACTCACCTTTGCTCGAGTC 60.416 54.545 15.13 7.10 39.39 3.36
3702 13575 1.333177 ACTCACCTTTGCTCGAGTCT 58.667 50.000 15.13 0.00 33.49 3.24
3703 13576 1.689273 ACTCACCTTTGCTCGAGTCTT 59.311 47.619 15.13 0.00 33.49 3.01
3704 13577 2.064762 CTCACCTTTGCTCGAGTCTTG 58.935 52.381 15.13 3.56 0.00 3.02
3705 13578 1.412710 TCACCTTTGCTCGAGTCTTGT 59.587 47.619 15.13 2.74 0.00 3.16
3706 13579 1.528586 CACCTTTGCTCGAGTCTTGTG 59.471 52.381 15.13 11.32 0.00 3.33
3707 13580 1.412710 ACCTTTGCTCGAGTCTTGTGA 59.587 47.619 15.13 0.00 0.00 3.58
3708 13581 2.037772 ACCTTTGCTCGAGTCTTGTGAT 59.962 45.455 15.13 0.00 0.00 3.06
3709 13582 2.414481 CCTTTGCTCGAGTCTTGTGATG 59.586 50.000 15.13 0.00 0.00 3.07
3710 13583 2.084610 TTGCTCGAGTCTTGTGATGG 57.915 50.000 15.13 0.00 0.00 3.51
3711 13584 1.256812 TGCTCGAGTCTTGTGATGGA 58.743 50.000 15.13 0.00 0.00 3.41
3712 13585 1.827344 TGCTCGAGTCTTGTGATGGAT 59.173 47.619 15.13 0.00 0.00 3.41
3713 13586 3.023832 TGCTCGAGTCTTGTGATGGATA 58.976 45.455 15.13 0.00 0.00 2.59
3714 13587 3.067320 TGCTCGAGTCTTGTGATGGATAG 59.933 47.826 15.13 0.00 0.00 2.08
3715 13588 3.551863 GCTCGAGTCTTGTGATGGATAGG 60.552 52.174 15.13 0.00 0.00 2.57
3716 13589 2.362397 TCGAGTCTTGTGATGGATAGGC 59.638 50.000 0.00 0.00 0.00 3.93
3717 13590 2.101415 CGAGTCTTGTGATGGATAGGCA 59.899 50.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.064820 GCAAACACGGACGGATTTCATAT 59.935 43.478 0.00 0.00 0.00 1.78
17 18 2.417239 GCAAACACGGACGGATTTCATA 59.583 45.455 0.00 0.00 0.00 2.15
52 53 3.859411 TCACAACAACTCAAACCAACC 57.141 42.857 0.00 0.00 0.00 3.77
81 82 2.440796 CCATCCAATGCTGGCCGT 60.441 61.111 0.00 0.00 43.17 5.68
99 100 0.460987 GACAAGGATGCGGGAGACAG 60.461 60.000 0.00 0.00 0.00 3.51
188 190 8.710835 TTTCTAAAAACATCCAACCAAAAGTC 57.289 30.769 0.00 0.00 0.00 3.01
225 228 1.170290 CGGCCGAAGACCAGGTTTTT 61.170 55.000 24.07 0.00 0.00 1.94
336 341 5.317808 TCAATTGATTAACGGTTTCCCTCA 58.682 37.500 3.38 0.00 0.00 3.86
338 343 5.065988 CGATCAATTGATTAACGGTTTCCCT 59.934 40.000 21.57 0.00 34.37 4.20
347 352 6.088824 GCCATCATCCGATCAATTGATTAAC 58.911 40.000 21.57 8.74 34.37 2.01
391 396 5.374921 CTCCAAGAATGATGCCTCAAGTAT 58.625 41.667 0.00 0.00 34.37 2.12
393 398 3.618351 CTCCAAGAATGATGCCTCAAGT 58.382 45.455 0.00 0.00 34.37 3.16
453 460 0.534203 ACATGAAACGCCGTTCCACT 60.534 50.000 1.60 0.00 0.00 4.00
459 466 3.240203 CGTGACATGAAACGCCGT 58.760 55.556 0.00 0.00 32.40 5.68
567 574 4.595538 TCGTCACCACGGCACCAC 62.596 66.667 0.00 0.00 46.70 4.16
575 582 4.634133 TGCCGTCGTCGTCACCAC 62.634 66.667 0.71 0.00 35.01 4.16
598 605 2.665649 TATTGACGCATCGACCTTGT 57.334 45.000 0.00 0.00 0.00 3.16
615 622 7.246311 CAGCGATTCATCTTCAAAACAGTTAT 58.754 34.615 0.00 0.00 0.00 1.89
618 625 4.083110 CCAGCGATTCATCTTCAAAACAGT 60.083 41.667 0.00 0.00 0.00 3.55
624 631 2.501316 TCTCCCAGCGATTCATCTTCAA 59.499 45.455 0.00 0.00 0.00 2.69
633 640 2.579201 CACCGTCTCCCAGCGATT 59.421 61.111 0.00 0.00 0.00 3.34
707 714 9.123902 CATCATACCAAAGGATAACATCTGAAA 57.876 33.333 0.00 0.00 0.00 2.69
728 735 7.042051 CCGAACCGAATAACAAATAGACATCAT 60.042 37.037 0.00 0.00 0.00 2.45
732 739 5.577945 GTCCGAACCGAATAACAAATAGACA 59.422 40.000 0.00 0.00 0.00 3.41
754 761 3.461061 TGATGAAGAGATGCCGATTGTC 58.539 45.455 0.00 0.00 0.00 3.18
781 788 5.935206 TGGCAACATCTGTCGTTATTTCTAA 59.065 36.000 0.00 0.00 46.17 2.10
882 2016 4.655762 TCCGGTCTCTGTATTCTGAATG 57.344 45.455 13.01 0.00 0.00 2.67
883 2017 4.039730 CCATCCGGTCTCTGTATTCTGAAT 59.960 45.833 8.14 8.14 0.00 2.57
885 2019 2.959030 CCATCCGGTCTCTGTATTCTGA 59.041 50.000 0.00 0.00 0.00 3.27
936 2078 2.757894 TCTCAGTAGGGGACATCTCC 57.242 55.000 0.00 0.00 35.50 3.71
940 2082 3.033659 ACGATTCTCAGTAGGGGACAT 57.966 47.619 0.00 0.00 0.00 3.06
1017 3265 1.508667 ATCTTGGTGGTGGCCATGGA 61.509 55.000 18.40 0.03 38.48 3.41
1056 3304 0.759346 ACGAAGAGAAACAGCCTGGT 59.241 50.000 0.00 0.00 0.00 4.00
1067 3315 3.738246 AGCTGCGCGACGAAGAGA 61.738 61.111 12.10 0.00 33.75 3.10
1548 3835 0.600255 GAACCACTGCAGCTGTACGT 60.600 55.000 15.27 8.24 0.00 3.57
1857 10011 4.497006 GCTACATTGACATCCATTGCTGAC 60.497 45.833 0.00 0.00 31.22 3.51
1858 10012 3.628942 GCTACATTGACATCCATTGCTGA 59.371 43.478 0.00 0.00 31.22 4.26
1859 10013 3.379057 TGCTACATTGACATCCATTGCTG 59.621 43.478 0.00 0.00 31.22 4.41
1861 10015 4.142315 ACTTGCTACATTGACATCCATTGC 60.142 41.667 0.00 0.00 31.22 3.56
1863 10017 5.124457 GTGACTTGCTACATTGACATCCATT 59.876 40.000 0.00 0.00 0.00 3.16
1865 10019 4.002982 GTGACTTGCTACATTGACATCCA 58.997 43.478 0.00 0.00 0.00 3.41
1866 10020 3.375299 GGTGACTTGCTACATTGACATCC 59.625 47.826 0.00 0.00 0.00 3.51
1867 10021 4.002982 TGGTGACTTGCTACATTGACATC 58.997 43.478 0.00 0.00 0.00 3.06
1936 10139 2.187073 GCTTGATCAGCCCCTGTTG 58.813 57.895 0.00 0.00 43.65 3.33
2322 10525 2.597510 AGGCCCTCCGCAACAAAC 60.598 61.111 0.00 0.00 40.31 2.93
2721 10973 2.846039 ACCGCGTGTCTCAGTATTAG 57.154 50.000 4.92 0.00 0.00 1.73
2984 12760 4.216902 TGCAGAAGACAAGGATGACAATTG 59.783 41.667 3.24 3.24 0.00 2.32
3042 12818 5.643379 TTAAGCCTTATGTTTGAAGCAGG 57.357 39.130 0.00 0.00 0.00 4.85
3044 12820 7.396055 ACCTAATTAAGCCTTATGTTTGAAGCA 59.604 33.333 0.00 0.00 0.00 3.91
3064 12840 5.132897 TGCGATTTTTGCAGAAACCTAAT 57.867 34.783 4.29 0.00 37.44 1.73
3080 12856 3.678056 TTAGTTCCACAGACTGCGATT 57.322 42.857 1.25 0.00 0.00 3.34
3082 12858 3.258372 AGATTTAGTTCCACAGACTGCGA 59.742 43.478 1.25 0.00 0.00 5.10
3175 12951 5.221362 TGTCCGTTCATCTTCAGAACAACTA 60.221 40.000 6.83 0.00 44.22 2.24
3176 12952 4.058817 GTCCGTTCATCTTCAGAACAACT 58.941 43.478 6.83 0.00 44.22 3.16
3177 12953 3.807622 TGTCCGTTCATCTTCAGAACAAC 59.192 43.478 6.83 4.81 44.22 3.32
3295 13113 1.075374 ACTGCACTTGCCCCTTATTGA 59.925 47.619 0.00 0.00 41.18 2.57
3305 13123 2.869233 TTTTCCTGAACTGCACTTGC 57.131 45.000 0.00 0.00 42.50 4.01
3317 13135 7.925993 TGTGTCTTTTGTACTGTATTTTCCTG 58.074 34.615 0.00 0.00 0.00 3.86
3364 13182 1.200020 GCTTCGTTCCATTTGTCCAGG 59.800 52.381 0.00 0.00 0.00 4.45
3561 13434 4.262463 GGACTTGTTCACTCACACCTATCA 60.262 45.833 0.00 0.00 0.00 2.15
3562 13435 4.246458 GGACTTGTTCACTCACACCTATC 58.754 47.826 0.00 0.00 0.00 2.08
3563 13436 3.306088 CGGACTTGTTCACTCACACCTAT 60.306 47.826 0.00 0.00 0.00 2.57
3564 13437 2.035449 CGGACTTGTTCACTCACACCTA 59.965 50.000 0.00 0.00 0.00 3.08
3565 13438 1.202533 CGGACTTGTTCACTCACACCT 60.203 52.381 0.00 0.00 0.00 4.00
3566 13439 1.217882 CGGACTTGTTCACTCACACC 58.782 55.000 0.00 0.00 0.00 4.16
3567 13440 1.217882 CCGGACTTGTTCACTCACAC 58.782 55.000 0.00 0.00 0.00 3.82
3568 13441 0.828022 ACCGGACTTGTTCACTCACA 59.172 50.000 9.46 0.00 0.00 3.58
3569 13442 2.401351 GTACCGGACTTGTTCACTCAC 58.599 52.381 9.46 0.00 0.00 3.51
3570 13443 1.342174 GGTACCGGACTTGTTCACTCA 59.658 52.381 9.46 0.00 0.00 3.41
3571 13444 1.342174 TGGTACCGGACTTGTTCACTC 59.658 52.381 9.46 0.00 0.00 3.51
3572 13445 1.416243 TGGTACCGGACTTGTTCACT 58.584 50.000 9.46 0.00 0.00 3.41
3573 13446 2.243602 TTGGTACCGGACTTGTTCAC 57.756 50.000 9.46 0.00 0.00 3.18
3574 13447 3.404899 GAATTGGTACCGGACTTGTTCA 58.595 45.455 9.46 0.00 0.00 3.18
3575 13448 2.745821 GGAATTGGTACCGGACTTGTTC 59.254 50.000 9.46 5.09 0.00 3.18
3576 13449 2.106857 TGGAATTGGTACCGGACTTGTT 59.893 45.455 9.46 0.00 0.00 2.83
3577 13450 1.700739 TGGAATTGGTACCGGACTTGT 59.299 47.619 9.46 0.00 0.00 3.16
3578 13451 2.081462 GTGGAATTGGTACCGGACTTG 58.919 52.381 9.46 0.00 0.00 3.16
3579 13452 1.982958 AGTGGAATTGGTACCGGACTT 59.017 47.619 9.46 0.00 0.00 3.01
3580 13453 1.652947 AGTGGAATTGGTACCGGACT 58.347 50.000 9.46 0.00 0.00 3.85
3581 13454 3.832615 ATAGTGGAATTGGTACCGGAC 57.167 47.619 9.46 1.18 0.00 4.79
3582 13455 4.035112 AGAATAGTGGAATTGGTACCGGA 58.965 43.478 9.46 0.00 0.00 5.14
3583 13456 4.417426 AGAATAGTGGAATTGGTACCGG 57.583 45.455 7.57 0.00 0.00 5.28
3584 13457 5.878116 TGAAAGAATAGTGGAATTGGTACCG 59.122 40.000 7.57 0.00 0.00 4.02
3585 13458 7.881775 ATGAAAGAATAGTGGAATTGGTACC 57.118 36.000 4.43 4.43 0.00 3.34
3586 13459 9.788960 GAAATGAAAGAATAGTGGAATTGGTAC 57.211 33.333 0.00 0.00 0.00 3.34
3587 13460 9.527157 TGAAATGAAAGAATAGTGGAATTGGTA 57.473 29.630 0.00 0.00 0.00 3.25
3588 13461 8.421249 TGAAATGAAAGAATAGTGGAATTGGT 57.579 30.769 0.00 0.00 0.00 3.67
3607 13480 6.435430 TCCCGTTTCACTCAATATGAAATG 57.565 37.500 11.13 11.13 45.27 2.32
3608 13481 7.773224 TGTATCCCGTTTCACTCAATATGAAAT 59.227 33.333 3.69 0.00 45.27 2.17
3609 13482 7.106890 TGTATCCCGTTTCACTCAATATGAAA 58.893 34.615 0.00 0.00 42.37 2.69
3610 13483 6.645306 TGTATCCCGTTTCACTCAATATGAA 58.355 36.000 0.00 0.00 34.27 2.57
3611 13484 6.228616 TGTATCCCGTTTCACTCAATATGA 57.771 37.500 0.00 0.00 0.00 2.15
3612 13485 6.147821 GGATGTATCCCGTTTCACTCAATATG 59.852 42.308 0.00 0.00 41.20 1.78
3613 13486 6.231211 GGATGTATCCCGTTTCACTCAATAT 58.769 40.000 0.00 0.00 41.20 1.28
3614 13487 5.607477 GGATGTATCCCGTTTCACTCAATA 58.393 41.667 0.00 0.00 41.20 1.90
3615 13488 4.451900 GGATGTATCCCGTTTCACTCAAT 58.548 43.478 0.00 0.00 41.20 2.57
3616 13489 3.869065 GGATGTATCCCGTTTCACTCAA 58.131 45.455 0.00 0.00 41.20 3.02
3617 13490 3.536956 GGATGTATCCCGTTTCACTCA 57.463 47.619 0.00 0.00 41.20 3.41
3627 13500 7.283354 CTTTTCCTAAAGTTGAGGATGTATCCC 59.717 40.741 10.01 0.68 42.75 3.85
3628 13501 7.283354 CCTTTTCCTAAAGTTGAGGATGTATCC 59.717 40.741 10.01 2.59 42.75 2.59
3629 13502 7.829706 ACCTTTTCCTAAAGTTGAGGATGTATC 59.170 37.037 10.01 0.00 42.75 2.24
3630 13503 7.699878 ACCTTTTCCTAAAGTTGAGGATGTAT 58.300 34.615 10.01 0.00 42.75 2.29
3631 13504 7.086685 ACCTTTTCCTAAAGTTGAGGATGTA 57.913 36.000 10.01 0.00 42.75 2.29
3632 13505 5.953571 ACCTTTTCCTAAAGTTGAGGATGT 58.046 37.500 10.01 3.11 42.75 3.06
3633 13506 7.665974 AGTTACCTTTTCCTAAAGTTGAGGATG 59.334 37.037 10.01 4.03 42.75 3.51
3634 13507 7.756614 AGTTACCTTTTCCTAAAGTTGAGGAT 58.243 34.615 10.01 0.00 42.75 3.24
3635 13508 7.145474 AGTTACCTTTTCCTAAAGTTGAGGA 57.855 36.000 4.65 4.65 41.52 3.71
3636 13509 7.255486 CCAAGTTACCTTTTCCTAAAGTTGAGG 60.255 40.741 0.00 0.00 39.29 3.86
3637 13510 7.284716 ACCAAGTTACCTTTTCCTAAAGTTGAG 59.715 37.037 0.00 0.00 39.29 3.02
3638 13511 7.120716 ACCAAGTTACCTTTTCCTAAAGTTGA 58.879 34.615 0.00 0.00 39.29 3.18
3639 13512 7.342769 ACCAAGTTACCTTTTCCTAAAGTTG 57.657 36.000 0.00 0.00 39.29 3.16
3640 13513 9.650714 AATACCAAGTTACCTTTTCCTAAAGTT 57.349 29.630 0.00 0.00 39.29 2.66
3641 13514 9.074576 CAATACCAAGTTACCTTTTCCTAAAGT 57.925 33.333 0.00 0.00 39.29 2.66
3642 13515 9.074576 ACAATACCAAGTTACCTTTTCCTAAAG 57.925 33.333 0.00 0.00 40.38 1.85
3643 13516 8.999905 ACAATACCAAGTTACCTTTTCCTAAA 57.000 30.769 0.00 0.00 0.00 1.85
3644 13517 8.999905 AACAATACCAAGTTACCTTTTCCTAA 57.000 30.769 0.00 0.00 0.00 2.69
3645 13518 8.999905 AAACAATACCAAGTTACCTTTTCCTA 57.000 30.769 0.00 0.00 0.00 2.94
3646 13519 7.907841 AAACAATACCAAGTTACCTTTTCCT 57.092 32.000 0.00 0.00 0.00 3.36
3647 13520 9.850628 GATAAACAATACCAAGTTACCTTTTCC 57.149 33.333 0.00 0.00 0.00 3.13
3650 13523 9.802039 TGAGATAAACAATACCAAGTTACCTTT 57.198 29.630 0.00 0.00 0.00 3.11
3651 13524 9.975218 ATGAGATAAACAATACCAAGTTACCTT 57.025 29.630 0.00 0.00 0.00 3.50
3652 13525 9.975218 AATGAGATAAACAATACCAAGTTACCT 57.025 29.630 0.00 0.00 0.00 3.08
3656 13529 9.533831 AGGAAATGAGATAAACAATACCAAGTT 57.466 29.630 0.00 0.00 0.00 2.66
3660 13533 9.832445 GAGTAGGAAATGAGATAAACAATACCA 57.168 33.333 0.00 0.00 0.00 3.25
3661 13534 9.832445 TGAGTAGGAAATGAGATAAACAATACC 57.168 33.333 0.00 0.00 0.00 2.73
3663 13536 9.832445 GGTGAGTAGGAAATGAGATAAACAATA 57.168 33.333 0.00 0.00 0.00 1.90
3664 13537 8.552296 AGGTGAGTAGGAAATGAGATAAACAAT 58.448 33.333 0.00 0.00 0.00 2.71
3665 13538 7.918076 AGGTGAGTAGGAAATGAGATAAACAA 58.082 34.615 0.00 0.00 0.00 2.83
3666 13539 7.496346 AGGTGAGTAGGAAATGAGATAAACA 57.504 36.000 0.00 0.00 0.00 2.83
3667 13540 8.669243 CAAAGGTGAGTAGGAAATGAGATAAAC 58.331 37.037 0.00 0.00 0.00 2.01
3668 13541 7.336931 GCAAAGGTGAGTAGGAAATGAGATAAA 59.663 37.037 0.00 0.00 0.00 1.40
3669 13542 6.823689 GCAAAGGTGAGTAGGAAATGAGATAA 59.176 38.462 0.00 0.00 0.00 1.75
3670 13543 6.156949 AGCAAAGGTGAGTAGGAAATGAGATA 59.843 38.462 0.00 0.00 0.00 1.98
3671 13544 5.045286 AGCAAAGGTGAGTAGGAAATGAGAT 60.045 40.000 0.00 0.00 0.00 2.75
3672 13545 4.287067 AGCAAAGGTGAGTAGGAAATGAGA 59.713 41.667 0.00 0.00 0.00 3.27
3673 13546 4.583871 AGCAAAGGTGAGTAGGAAATGAG 58.416 43.478 0.00 0.00 0.00 2.90
3674 13547 4.579869 GAGCAAAGGTGAGTAGGAAATGA 58.420 43.478 0.00 0.00 0.00 2.57
3675 13548 3.372206 CGAGCAAAGGTGAGTAGGAAATG 59.628 47.826 0.00 0.00 0.00 2.32
3676 13549 3.260884 TCGAGCAAAGGTGAGTAGGAAAT 59.739 43.478 0.00 0.00 0.00 2.17
3677 13550 2.631062 TCGAGCAAAGGTGAGTAGGAAA 59.369 45.455 0.00 0.00 0.00 3.13
3678 13551 2.231478 CTCGAGCAAAGGTGAGTAGGAA 59.769 50.000 0.00 0.00 0.00 3.36
3679 13552 1.819288 CTCGAGCAAAGGTGAGTAGGA 59.181 52.381 0.00 0.00 0.00 2.94
3680 13553 1.546476 ACTCGAGCAAAGGTGAGTAGG 59.454 52.381 13.61 0.00 39.76 3.18
3681 13554 2.490115 AGACTCGAGCAAAGGTGAGTAG 59.510 50.000 13.61 0.00 41.50 2.57
3682 13555 2.515854 AGACTCGAGCAAAGGTGAGTA 58.484 47.619 13.61 0.00 41.50 2.59
3683 13556 1.333177 AGACTCGAGCAAAGGTGAGT 58.667 50.000 13.61 0.00 43.95 3.41
3684 13557 2.064762 CAAGACTCGAGCAAAGGTGAG 58.935 52.381 13.61 0.00 34.65 3.51
3685 13558 1.412710 ACAAGACTCGAGCAAAGGTGA 59.587 47.619 13.61 0.00 0.00 4.02
3686 13559 1.528586 CACAAGACTCGAGCAAAGGTG 59.471 52.381 13.61 11.01 0.00 4.00
3687 13560 1.412710 TCACAAGACTCGAGCAAAGGT 59.587 47.619 13.61 1.73 0.00 3.50
3688 13561 2.154854 TCACAAGACTCGAGCAAAGG 57.845 50.000 13.61 1.04 0.00 3.11
3689 13562 2.414481 CCATCACAAGACTCGAGCAAAG 59.586 50.000 13.61 3.03 0.00 2.77
3690 13563 2.037121 TCCATCACAAGACTCGAGCAAA 59.963 45.455 13.61 0.00 0.00 3.68
3691 13564 1.618343 TCCATCACAAGACTCGAGCAA 59.382 47.619 13.61 0.00 0.00 3.91
3692 13565 1.256812 TCCATCACAAGACTCGAGCA 58.743 50.000 13.61 0.00 0.00 4.26
3693 13566 2.593346 ATCCATCACAAGACTCGAGC 57.407 50.000 13.61 5.49 0.00 5.03
3694 13567 3.551863 GCCTATCCATCACAAGACTCGAG 60.552 52.174 11.84 11.84 0.00 4.04
3695 13568 2.362397 GCCTATCCATCACAAGACTCGA 59.638 50.000 0.00 0.00 0.00 4.04
3696 13569 2.101415 TGCCTATCCATCACAAGACTCG 59.899 50.000 0.00 0.00 0.00 4.18
3697 13570 3.827008 TGCCTATCCATCACAAGACTC 57.173 47.619 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.