Multiple sequence alignment - TraesCS3B01G174900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G174900 chr3B 100.000 2979 0 0 533 3511 176637212 176634234 0.000000e+00 5502.0
1 TraesCS3B01G174900 chr3B 94.863 2336 77 10 938 3256 176783657 176781348 0.000000e+00 3609.0
2 TraesCS3B01G174900 chr3B 82.609 1610 187 50 1008 2565 176860085 176858517 0.000000e+00 1336.0
3 TraesCS3B01G174900 chr3B 82.609 1610 187 50 1008 2565 176879836 176878268 0.000000e+00 1336.0
4 TraesCS3B01G174900 chr3B 92.075 265 19 1 677 939 739875814 739875550 4.280000e-99 372.0
5 TraesCS3B01G174900 chr3B 96.729 214 5 2 3300 3511 176781339 176781126 4.310000e-94 355.0
6 TraesCS3B01G174900 chr3B 90.706 269 22 2 677 942 644930197 644929929 4.310000e-94 355.0
7 TraesCS3B01G174900 chr3B 100.000 110 0 0 1 110 176637744 176637635 1.650000e-48 204.0
8 TraesCS3B01G174900 chr3B 93.431 137 5 3 533 666 558108585 558108450 2.140000e-47 200.0
9 TraesCS3B01G174900 chr3B 86.131 137 11 6 3301 3431 176857620 176857486 1.310000e-29 141.0
10 TraesCS3B01G174900 chr3B 86.131 137 11 6 3301 3431 176877371 176877237 1.310000e-29 141.0
11 TraesCS3B01G174900 chr3B 96.154 52 2 0 3257 3308 828918502 828918451 6.240000e-13 86.1
12 TraesCS3B01G174900 chr3B 96.078 51 1 1 3259 3309 581966270 581966221 8.080000e-12 82.4
13 TraesCS3B01G174900 chr3A 83.019 1590 156 45 1008 2565 131415394 131416901 0.000000e+00 1336.0
14 TraesCS3B01G174900 chr3A 89.408 963 60 22 1799 2757 131077515 131076591 0.000000e+00 1175.0
15 TraesCS3B01G174900 chr3A 90.096 626 39 11 963 1587 131084189 131083586 0.000000e+00 791.0
16 TraesCS3B01G174900 chr3A 96.209 211 8 0 3300 3510 131074675 131074465 2.590000e-91 346.0
17 TraesCS3B01G174900 chr3A 88.477 243 16 7 1575 1806 131081231 131080990 2.060000e-72 283.0
18 TraesCS3B01G174900 chr3A 86.957 115 8 1 2852 2959 131074980 131074866 4.760000e-24 122.0
19 TraesCS3B01G174900 chr3A 97.917 48 0 1 3260 3307 662336107 662336061 8.080000e-12 82.4
20 TraesCS3B01G174900 chr3A 93.750 48 3 0 3166 3213 131074759 131074712 4.860000e-09 73.1
21 TraesCS3B01G174900 chr3D 92.580 903 53 6 938 1831 123517312 123516415 0.000000e+00 1284.0
22 TraesCS3B01G174900 chr3D 81.354 1507 177 57 1008 2479 123566966 123565529 0.000000e+00 1131.0
23 TraesCS3B01G174900 chr3D 85.294 102 9 5 3301 3396 123541463 123541362 2.230000e-17 100.0
24 TraesCS3B01G174900 chr5B 92.620 271 20 0 674 944 585471941 585472211 1.180000e-104 390.0
25 TraesCS3B01G174900 chr5B 93.431 137 5 2 533 666 21547572 21547437 2.140000e-47 200.0
26 TraesCS3B01G174900 chr5B 95.327 107 5 0 3 109 547394325 547394431 1.680000e-38 171.0
27 TraesCS3B01G174900 chr5B 94.495 109 6 0 1 109 659751471 659751363 6.030000e-38 169.0
28 TraesCS3B01G174900 chr5B 94.444 108 6 0 1 108 9057352 9057245 2.170000e-37 167.0
29 TraesCS3B01G174900 chr5B 91.379 58 3 2 3259 3315 606308269 606308213 1.040000e-10 78.7
30 TraesCS3B01G174900 chr1B 91.882 271 20 1 671 939 547170336 547170606 9.200000e-101 377.0
31 TraesCS3B01G174900 chr1B 100.000 45 0 0 3259 3303 599230939 599230983 2.250000e-12 84.2
32 TraesCS3B01G174900 chr1B 94.231 52 1 2 3259 3309 633109447 633109397 1.040000e-10 78.7
33 TraesCS3B01G174900 chr6B 92.105 266 21 0 677 942 422969178 422968913 3.310000e-100 375.0
34 TraesCS3B01G174900 chr6B 91.729 266 18 3 677 939 47870326 47870062 1.990000e-97 366.0
35 TraesCS3B01G174900 chr6B 93.431 137 5 2 533 666 12371261 12371396 2.140000e-47 200.0
36 TraesCS3B01G174900 chr6B 93.431 137 5 2 533 666 474182403 474182268 2.140000e-47 200.0
37 TraesCS3B01G174900 chr6B 94.340 106 6 0 4 109 474182732 474182627 2.800000e-36 163.0
38 TraesCS3B01G174900 chr6B 78.205 156 28 6 1684 1836 25571634 25571786 1.040000e-15 95.3
39 TraesCS3B01G174900 chr2B 90.647 278 24 2 674 949 63807783 63808060 5.540000e-98 368.0
40 TraesCS3B01G174900 chr2B 90.476 273 22 3 673 942 456461031 456460760 1.200000e-94 357.0
41 TraesCS3B01G174900 chr2B 94.161 137 4 3 533 666 433929379 433929514 4.590000e-49 206.0
42 TraesCS3B01G174900 chr2B 96.330 109 4 0 1 109 461252084 461252192 2.780000e-41 180.0
43 TraesCS3B01G174900 chr2B 93.636 110 7 0 1 110 63805493 63805602 7.800000e-37 165.0
44 TraesCS3B01G174900 chr7B 90.614 277 24 1 674 948 553328095 553328371 1.990000e-97 366.0
45 TraesCS3B01G174900 chr7B 96.000 125 4 1 542 666 553326141 553326264 5.940000e-48 202.0
46 TraesCS3B01G174900 chr7B 95.370 108 5 0 1 108 24068592 24068699 4.660000e-39 172.0
47 TraesCS3B01G174900 chr2D 88.950 181 16 4 1124 1302 11082053 11082231 1.640000e-53 220.0
48 TraesCS3B01G174900 chr2D 97.826 46 1 0 3257 3302 293913141 293913186 2.910000e-11 80.5
49 TraesCS3B01G174900 chr2A 88.827 179 18 2 1124 1301 11904109 11903932 5.900000e-53 219.0
50 TraesCS3B01G174900 chr4B 95.455 132 4 2 542 673 260071950 260071821 3.550000e-50 209.0
51 TraesCS3B01G174900 chr4B 92.908 141 5 3 533 669 562345947 562345808 2.140000e-47 200.0
52 TraesCS3B01G174900 chr4B 98.148 108 2 0 1 108 37949710 37949603 4.630000e-44 189.0
53 TraesCS3B01G174900 chr4B 93.578 109 7 0 1 109 625292711 625292819 2.800000e-36 163.0
54 TraesCS3B01G174900 chr4D 92.701 137 6 2 533 666 434279443 434279308 9.940000e-46 195.0
55 TraesCS3B01G174900 chr4D 88.060 67 7 1 3260 3325 129128838 129128904 1.040000e-10 78.7
56 TraesCS3B01G174900 chrUn 77.455 275 62 0 1934 2208 248330975 248331249 7.800000e-37 165.0
57 TraesCS3B01G174900 chr6D 94.340 53 1 2 3257 3309 459191738 459191788 2.910000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G174900 chr3B 176634234 176637744 3510 True 2853.000000 5502 100.000000 1 3511 2 chr3B.!!$R6 3510
1 TraesCS3B01G174900 chr3B 176781126 176783657 2531 True 1982.000000 3609 95.796000 938 3511 2 chr3B.!!$R7 2573
2 TraesCS3B01G174900 chr3B 176857486 176860085 2599 True 738.500000 1336 84.370000 1008 3431 2 chr3B.!!$R8 2423
3 TraesCS3B01G174900 chr3B 176877237 176879836 2599 True 738.500000 1336 84.370000 1008 3431 2 chr3B.!!$R9 2423
4 TraesCS3B01G174900 chr3A 131415394 131416901 1507 False 1336.000000 1336 83.019000 1008 2565 1 chr3A.!!$F1 1557
5 TraesCS3B01G174900 chr3A 131074465 131084189 9724 True 465.016667 1175 90.816167 963 3510 6 chr3A.!!$R2 2547
6 TraesCS3B01G174900 chr3D 123516415 123517312 897 True 1284.000000 1284 92.580000 938 1831 1 chr3D.!!$R1 893
7 TraesCS3B01G174900 chr3D 123565529 123566966 1437 True 1131.000000 1131 81.354000 1008 2479 1 chr3D.!!$R3 1471
8 TraesCS3B01G174900 chr2B 63805493 63808060 2567 False 266.500000 368 92.141500 1 949 2 chr2B.!!$F3 948
9 TraesCS3B01G174900 chr7B 553326141 553328371 2230 False 284.000000 366 93.307000 542 948 2 chr7B.!!$F2 406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 807 0.039617 TTGTATTTTTGCGCGCTGCT 60.040 45.0 33.29 14.39 46.63 4.24 F
933 934 0.107945 GAAGCTCGGCTGTTGGAGAT 60.108 55.0 0.00 0.00 39.62 2.75 F
1318 1334 0.108662 TACACATGCGCACTCCTCAG 60.109 55.0 14.90 0.74 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 7905 0.404040 GGATTGTCCCAGGAACCACA 59.596 55.000 0.00 0.0 0.00 4.17 R
2471 8405 1.376466 GCTCTGTCTTGCAGGGGAA 59.624 57.895 0.00 0.0 45.76 3.97 R
3283 11106 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.0 44.66 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.214383 CGGCACATTCGAGCGCTG 62.214 66.667 18.48 7.71 0.00 5.18
53 54 2.804856 GCCGCACTCTCTCCTCTC 59.195 66.667 0.00 0.00 0.00 3.20
54 55 2.781158 GCCGCACTCTCTCCTCTCC 61.781 68.421 0.00 0.00 0.00 3.71
55 56 1.077068 CCGCACTCTCTCCTCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
56 57 1.101049 CCGCACTCTCTCCTCTCCTC 61.101 65.000 0.00 0.00 0.00 3.71
57 58 1.101049 CGCACTCTCTCCTCTCCTCC 61.101 65.000 0.00 0.00 0.00 4.30
58 59 0.258774 GCACTCTCTCCTCTCCTCCT 59.741 60.000 0.00 0.00 0.00 3.69
59 60 1.750682 GCACTCTCTCCTCTCCTCCTC 60.751 61.905 0.00 0.00 0.00 3.71
60 61 1.133792 CACTCTCTCCTCTCCTCCTCC 60.134 61.905 0.00 0.00 0.00 4.30
61 62 1.275002 ACTCTCTCCTCTCCTCCTCCT 60.275 57.143 0.00 0.00 0.00 3.69
62 63 2.021441 ACTCTCTCCTCTCCTCCTCCTA 60.021 54.545 0.00 0.00 0.00 2.94
63 64 2.372172 CTCTCTCCTCTCCTCCTCCTAC 59.628 59.091 0.00 0.00 0.00 3.18
64 65 1.071699 CTCTCCTCTCCTCCTCCTACG 59.928 61.905 0.00 0.00 0.00 3.51
65 66 0.536460 CTCCTCTCCTCCTCCTACGC 60.536 65.000 0.00 0.00 0.00 4.42
66 67 1.529713 CCTCTCCTCCTCCTACGCC 60.530 68.421 0.00 0.00 0.00 5.68
67 68 1.227664 CTCTCCTCCTCCTACGCCA 59.772 63.158 0.00 0.00 0.00 5.69
68 69 1.076923 TCTCCTCCTCCTACGCCAC 60.077 63.158 0.00 0.00 0.00 5.01
69 70 2.439701 TCCTCCTCCTACGCCACG 60.440 66.667 0.00 0.00 0.00 4.94
70 71 4.208686 CCTCCTCCTACGCCACGC 62.209 72.222 0.00 0.00 0.00 5.34
570 571 2.163818 ACATCCGCGAAGAAGAACAA 57.836 45.000 8.23 0.00 0.00 2.83
571 572 2.069273 ACATCCGCGAAGAAGAACAAG 58.931 47.619 8.23 0.00 0.00 3.16
572 573 1.394917 CATCCGCGAAGAAGAACAAGG 59.605 52.381 8.23 0.00 0.00 3.61
573 574 0.949105 TCCGCGAAGAAGAACAAGGC 60.949 55.000 8.23 0.00 0.00 4.35
574 575 1.130613 CGCGAAGAAGAACAAGGCG 59.869 57.895 0.00 0.00 36.05 5.52
575 576 1.497722 GCGAAGAAGAACAAGGCGG 59.502 57.895 0.00 0.00 0.00 6.13
576 577 1.497722 CGAAGAAGAACAAGGCGGC 59.502 57.895 0.00 0.00 0.00 6.53
577 578 1.497722 GAAGAAGAACAAGGCGGCG 59.502 57.895 0.51 0.51 0.00 6.46
578 579 1.912371 GAAGAAGAACAAGGCGGCGG 61.912 60.000 9.78 2.23 0.00 6.13
579 580 2.358247 GAAGAACAAGGCGGCGGA 60.358 61.111 9.78 0.00 0.00 5.54
580 581 2.668550 AAGAACAAGGCGGCGGAC 60.669 61.111 9.78 0.00 0.00 4.79
610 611 2.978824 TCGAAGGCGAGGGGAAAG 59.021 61.111 0.00 0.00 42.51 2.62
611 612 2.125106 CGAAGGCGAGGGGAAAGG 60.125 66.667 0.00 0.00 40.82 3.11
612 613 2.656069 CGAAGGCGAGGGGAAAGGA 61.656 63.158 0.00 0.00 40.82 3.36
613 614 1.683441 GAAGGCGAGGGGAAAGGAA 59.317 57.895 0.00 0.00 0.00 3.36
614 615 0.393132 GAAGGCGAGGGGAAAGGAAG 60.393 60.000 0.00 0.00 0.00 3.46
615 616 2.438614 GGCGAGGGGAAAGGAAGC 60.439 66.667 0.00 0.00 0.00 3.86
616 617 2.671682 GCGAGGGGAAAGGAAGCT 59.328 61.111 0.00 0.00 0.00 3.74
617 618 1.002011 GCGAGGGGAAAGGAAGCTT 60.002 57.895 0.00 0.00 0.00 3.74
618 619 1.308783 GCGAGGGGAAAGGAAGCTTG 61.309 60.000 2.10 0.00 0.00 4.01
619 620 1.308783 CGAGGGGAAAGGAAGCTTGC 61.309 60.000 10.41 10.41 0.00 4.01
620 621 0.251341 GAGGGGAAAGGAAGCTTGCA 60.251 55.000 20.82 0.00 0.00 4.08
621 622 0.251519 AGGGGAAAGGAAGCTTGCAG 60.252 55.000 20.82 0.00 0.00 4.41
622 623 1.253593 GGGGAAAGGAAGCTTGCAGG 61.254 60.000 20.82 0.00 0.00 4.85
623 624 1.253593 GGGAAAGGAAGCTTGCAGGG 61.254 60.000 20.82 0.00 0.00 4.45
624 625 1.588597 GAAAGGAAGCTTGCAGGGC 59.411 57.895 20.82 1.47 0.00 5.19
625 626 2.205243 GAAAGGAAGCTTGCAGGGCG 62.205 60.000 20.82 0.00 34.52 6.13
626 627 2.983725 AAAGGAAGCTTGCAGGGCGT 62.984 55.000 20.82 0.00 34.52 5.68
627 628 2.983725 AAGGAAGCTTGCAGGGCGTT 62.984 55.000 20.82 1.24 34.52 4.84
628 629 2.564721 GGAAGCTTGCAGGGCGTTT 61.565 57.895 13.73 0.00 34.52 3.60
629 630 1.372128 GAAGCTTGCAGGGCGTTTG 60.372 57.895 2.10 0.00 34.52 2.93
630 631 1.795170 GAAGCTTGCAGGGCGTTTGA 61.795 55.000 2.10 0.00 34.52 2.69
631 632 1.181098 AAGCTTGCAGGGCGTTTGAT 61.181 50.000 0.00 0.00 34.52 2.57
632 633 1.444895 GCTTGCAGGGCGTTTGATG 60.445 57.895 0.00 0.00 0.00 3.07
633 634 1.213537 CTTGCAGGGCGTTTGATGG 59.786 57.895 0.00 0.00 0.00 3.51
634 635 2.216750 CTTGCAGGGCGTTTGATGGG 62.217 60.000 0.00 0.00 0.00 4.00
635 636 4.133796 GCAGGGCGTTTGATGGGC 62.134 66.667 0.00 0.00 0.00 5.36
636 637 3.814268 CAGGGCGTTTGATGGGCG 61.814 66.667 0.00 0.00 0.00 6.13
660 661 4.170062 CTACCGAAGCGCCGACGA 62.170 66.667 17.38 1.08 43.93 4.20
661 662 4.170062 TACCGAAGCGCCGACGAG 62.170 66.667 17.38 11.01 43.93 4.18
665 666 4.778415 GAAGCGCCGACGAGCTCA 62.778 66.667 15.40 0.00 45.27 4.26
666 667 4.135153 AAGCGCCGACGAGCTCAT 62.135 61.111 15.40 0.00 45.27 2.90
667 668 3.649277 AAGCGCCGACGAGCTCATT 62.649 57.895 15.40 0.00 45.27 2.57
668 669 3.918220 GCGCCGACGAGCTCATTG 61.918 66.667 15.40 1.44 43.93 2.82
669 670 3.918220 CGCCGACGAGCTCATTGC 61.918 66.667 15.40 9.31 43.93 3.56
670 671 2.815211 GCCGACGAGCTCATTGCA 60.815 61.111 15.40 0.00 45.94 4.08
671 672 2.176273 GCCGACGAGCTCATTGCAT 61.176 57.895 15.40 0.00 45.94 3.96
672 673 1.709147 GCCGACGAGCTCATTGCATT 61.709 55.000 15.40 0.00 45.94 3.56
673 674 0.729116 CCGACGAGCTCATTGCATTT 59.271 50.000 15.40 0.00 45.94 2.32
674 675 1.131126 CCGACGAGCTCATTGCATTTT 59.869 47.619 15.40 0.00 45.94 1.82
675 676 2.171567 CGACGAGCTCATTGCATTTTG 58.828 47.619 15.40 0.00 45.94 2.44
676 677 2.159667 CGACGAGCTCATTGCATTTTGA 60.160 45.455 15.40 0.00 45.94 2.69
677 678 3.486375 CGACGAGCTCATTGCATTTTGAT 60.486 43.478 15.40 0.00 45.94 2.57
678 679 4.025015 ACGAGCTCATTGCATTTTGATC 57.975 40.909 15.40 0.00 45.94 2.92
679 680 3.441222 ACGAGCTCATTGCATTTTGATCA 59.559 39.130 15.40 0.00 45.94 2.92
680 681 4.082625 ACGAGCTCATTGCATTTTGATCAA 60.083 37.500 15.40 3.38 45.94 2.57
681 682 4.264614 CGAGCTCATTGCATTTTGATCAAC 59.735 41.667 15.40 0.00 45.94 3.18
682 683 5.401531 AGCTCATTGCATTTTGATCAACT 57.598 34.783 7.89 0.00 45.94 3.16
683 684 5.790593 AGCTCATTGCATTTTGATCAACTT 58.209 33.333 7.89 0.00 45.94 2.66
684 685 5.637810 AGCTCATTGCATTTTGATCAACTTG 59.362 36.000 7.89 9.80 45.94 3.16
685 686 5.407387 GCTCATTGCATTTTGATCAACTTGT 59.593 36.000 7.89 0.00 42.31 3.16
686 687 6.073440 GCTCATTGCATTTTGATCAACTTGTT 60.073 34.615 7.89 0.00 42.31 2.83
687 688 7.519328 GCTCATTGCATTTTGATCAACTTGTTT 60.519 33.333 7.89 0.00 42.31 2.83
688 689 7.631822 TCATTGCATTTTGATCAACTTGTTTG 58.368 30.769 7.89 8.07 36.42 2.93
689 690 6.981762 TTGCATTTTGATCAACTTGTTTGT 57.018 29.167 7.89 0.00 36.49 2.83
690 691 6.347270 TGCATTTTGATCAACTTGTTTGTG 57.653 33.333 7.89 0.25 36.49 3.33
691 692 5.873712 TGCATTTTGATCAACTTGTTTGTGT 59.126 32.000 7.89 0.00 36.49 3.72
692 693 6.035866 TGCATTTTGATCAACTTGTTTGTGTC 59.964 34.615 7.89 0.00 36.49 3.67
693 694 6.035866 GCATTTTGATCAACTTGTTTGTGTCA 59.964 34.615 7.89 0.00 36.49 3.58
694 695 7.412781 GCATTTTGATCAACTTGTTTGTGTCAA 60.413 33.333 7.89 0.00 38.23 3.18
695 696 7.953158 TTTTGATCAACTTGTTTGTGTCAAA 57.047 28.000 7.89 12.15 42.42 2.69
696 697 8.545229 TTTTGATCAACTTGTTTGTGTCAAAT 57.455 26.923 7.89 0.00 42.92 2.32
697 698 8.545229 TTTGATCAACTTGTTTGTGTCAAATT 57.455 26.923 7.89 0.00 41.07 1.82
698 699 8.545229 TTGATCAACTTGTTTGTGTCAAATTT 57.455 26.923 3.38 0.00 37.66 1.82
699 700 8.183830 TGATCAACTTGTTTGTGTCAAATTTC 57.816 30.769 0.00 0.00 36.49 2.17
700 701 7.816513 TGATCAACTTGTTTGTGTCAAATTTCA 59.183 29.630 0.00 0.00 36.49 2.69
701 702 7.344910 TCAACTTGTTTGTGTCAAATTTCAC 57.655 32.000 3.64 3.64 36.49 3.18
702 703 6.088749 TCAACTTGTTTGTGTCAAATTTCACG 59.911 34.615 5.76 0.00 37.38 4.35
703 704 5.465935 ACTTGTTTGTGTCAAATTTCACGT 58.534 33.333 5.76 0.00 37.38 4.49
704 705 5.344665 ACTTGTTTGTGTCAAATTTCACGTG 59.655 36.000 9.94 9.94 37.38 4.49
705 706 4.799678 TGTTTGTGTCAAATTTCACGTGT 58.200 34.783 16.51 0.00 37.38 4.49
706 707 5.223382 TGTTTGTGTCAAATTTCACGTGTT 58.777 33.333 16.51 0.00 37.38 3.32
707 708 5.343593 TGTTTGTGTCAAATTTCACGTGTTC 59.656 36.000 16.51 0.00 37.38 3.18
708 709 4.686839 TGTGTCAAATTTCACGTGTTCA 57.313 36.364 16.51 0.70 37.38 3.18
709 710 5.242069 TGTGTCAAATTTCACGTGTTCAT 57.758 34.783 16.51 3.27 37.38 2.57
710 711 5.645624 TGTGTCAAATTTCACGTGTTCATT 58.354 33.333 16.51 9.34 37.38 2.57
711 712 5.514559 TGTGTCAAATTTCACGTGTTCATTG 59.485 36.000 16.51 15.92 37.38 2.82
712 713 4.502282 TGTCAAATTTCACGTGTTCATTGC 59.498 37.500 16.51 12.55 0.00 3.56
713 714 4.502282 GTCAAATTTCACGTGTTCATTGCA 59.498 37.500 16.51 5.52 0.00 4.08
714 715 5.175491 GTCAAATTTCACGTGTTCATTGCAT 59.825 36.000 16.51 0.00 0.00 3.96
715 716 5.752472 TCAAATTTCACGTGTTCATTGCATT 59.248 32.000 16.51 1.19 0.00 3.56
716 717 6.257411 TCAAATTTCACGTGTTCATTGCATTT 59.743 30.769 16.51 6.78 0.00 2.32
717 718 5.827568 ATTTCACGTGTTCATTGCATTTC 57.172 34.783 16.51 0.00 0.00 2.17
718 719 2.914861 TCACGTGTTCATTGCATTTCG 58.085 42.857 16.51 0.00 0.00 3.46
719 720 2.545946 TCACGTGTTCATTGCATTTCGA 59.454 40.909 16.51 0.00 0.00 3.71
720 721 3.188254 TCACGTGTTCATTGCATTTCGAT 59.812 39.130 16.51 0.00 0.00 3.59
721 722 3.298760 CACGTGTTCATTGCATTTCGATG 59.701 43.478 7.58 0.00 37.82 3.84
722 723 3.188254 ACGTGTTCATTGCATTTCGATGA 59.812 39.130 0.00 0.00 42.42 2.92
729 730 6.874297 TCATTGCATTTCGATGAATGTTTC 57.126 33.333 10.65 0.00 41.46 2.78
730 731 6.388278 TCATTGCATTTCGATGAATGTTTCA 58.612 32.000 10.65 0.00 41.46 2.69
731 732 6.867293 TCATTGCATTTCGATGAATGTTTCAA 59.133 30.769 10.65 7.44 43.95 2.69
732 733 7.384387 TCATTGCATTTCGATGAATGTTTCAAA 59.616 29.630 10.65 1.29 43.95 2.69
733 734 6.450845 TGCATTTCGATGAATGTTTCAAAC 57.549 33.333 10.65 0.00 43.95 2.93
734 735 6.215121 TGCATTTCGATGAATGTTTCAAACT 58.785 32.000 10.65 0.00 43.95 2.66
735 736 6.363088 TGCATTTCGATGAATGTTTCAAACTC 59.637 34.615 10.65 0.00 43.95 3.01
736 737 6.363088 GCATTTCGATGAATGTTTCAAACTCA 59.637 34.615 10.65 0.00 43.95 3.41
737 738 7.062605 GCATTTCGATGAATGTTTCAAACTCAT 59.937 33.333 10.65 5.00 43.95 2.90
738 739 8.918658 CATTTCGATGAATGTTTCAAACTCATT 58.081 29.630 6.49 0.00 43.95 2.57
739 740 8.870160 TTTCGATGAATGTTTCAAACTCATTT 57.130 26.923 6.49 0.00 43.95 2.32
740 741 8.870160 TTCGATGAATGTTTCAAACTCATTTT 57.130 26.923 6.49 0.00 43.95 1.82
741 742 8.284557 TCGATGAATGTTTCAAACTCATTTTG 57.715 30.769 6.49 2.12 45.38 2.44
742 743 7.920151 TCGATGAATGTTTCAAACTCATTTTGT 59.080 29.630 6.49 0.00 44.47 2.83
743 744 7.999878 CGATGAATGTTTCAAACTCATTTTGTG 59.000 33.333 6.49 0.00 44.47 3.33
744 745 8.721019 ATGAATGTTTCAAACTCATTTTGTGT 57.279 26.923 1.10 0.00 44.47 3.72
745 746 8.183830 TGAATGTTTCAAACTCATTTTGTGTC 57.816 30.769 1.10 0.00 44.47 3.67
746 747 7.277539 TGAATGTTTCAAACTCATTTTGTGTCC 59.722 33.333 1.10 0.00 44.47 4.02
747 748 6.030548 TGTTTCAAACTCATTTTGTGTCCA 57.969 33.333 1.10 0.00 44.47 4.02
748 749 6.459066 TGTTTCAAACTCATTTTGTGTCCAA 58.541 32.000 1.10 0.00 44.47 3.53
749 750 6.931281 TGTTTCAAACTCATTTTGTGTCCAAA 59.069 30.769 1.10 0.00 44.47 3.28
762 763 6.788598 TTGTGTCCAAAATGCCATATATGT 57.211 33.333 11.73 0.00 0.00 2.29
763 764 6.788598 TGTGTCCAAAATGCCATATATGTT 57.211 33.333 11.73 0.00 0.00 2.71
764 765 7.888250 TGTGTCCAAAATGCCATATATGTTA 57.112 32.000 11.73 0.71 0.00 2.41
765 766 8.298729 TGTGTCCAAAATGCCATATATGTTAA 57.701 30.769 11.73 0.00 0.00 2.01
766 767 8.753133 TGTGTCCAAAATGCCATATATGTTAAA 58.247 29.630 11.73 0.00 0.00 1.52
767 768 9.762933 GTGTCCAAAATGCCATATATGTTAAAT 57.237 29.630 11.73 0.00 0.00 1.40
768 769 9.761504 TGTCCAAAATGCCATATATGTTAAATG 57.238 29.630 11.73 3.94 0.00 2.32
769 770 9.762933 GTCCAAAATGCCATATATGTTAAATGT 57.237 29.630 11.73 0.00 0.00 2.71
770 771 9.979578 TCCAAAATGCCATATATGTTAAATGTC 57.020 29.630 11.73 0.00 0.00 3.06
771 772 9.206870 CCAAAATGCCATATATGTTAAATGTCC 57.793 33.333 11.73 0.00 0.00 4.02
772 773 8.914654 CAAAATGCCATATATGTTAAATGTCCG 58.085 33.333 11.73 0.00 0.00 4.79
773 774 6.757897 ATGCCATATATGTTAAATGTCCGG 57.242 37.500 11.73 0.00 0.00 5.14
774 775 4.457603 TGCCATATATGTTAAATGTCCGGC 59.542 41.667 11.73 3.99 35.21 6.13
775 776 4.436852 GCCATATATGTTAAATGTCCGGCG 60.437 45.833 11.73 0.00 0.00 6.46
776 777 4.932799 CCATATATGTTAAATGTCCGGCGA 59.067 41.667 9.30 0.00 0.00 5.54
777 778 5.063438 CCATATATGTTAAATGTCCGGCGAG 59.937 44.000 9.30 0.00 0.00 5.03
778 779 2.396590 ATGTTAAATGTCCGGCGAGT 57.603 45.000 9.30 0.00 0.00 4.18
779 780 1.717194 TGTTAAATGTCCGGCGAGTC 58.283 50.000 9.30 0.00 0.00 3.36
780 781 0.643820 GTTAAATGTCCGGCGAGTCG 59.356 55.000 9.30 8.54 0.00 4.18
792 793 3.245315 GAGTCGCGCGCGTTGTAT 61.245 61.111 46.54 30.21 40.74 2.29
793 794 2.785105 GAGTCGCGCGCGTTGTATT 61.785 57.895 46.54 28.36 40.74 1.89
794 795 2.095096 GTCGCGCGCGTTGTATTT 59.905 55.556 46.54 0.00 40.74 1.40
795 796 1.508332 GTCGCGCGCGTTGTATTTT 60.508 52.632 46.54 0.00 40.74 1.82
796 797 1.055934 GTCGCGCGCGTTGTATTTTT 61.056 50.000 46.54 0.00 40.74 1.94
797 798 1.055405 TCGCGCGCGTTGTATTTTTG 61.055 50.000 46.54 19.82 40.74 2.44
798 799 1.055085 GCGCGCGTTGTATTTTTGC 59.945 52.632 32.35 5.62 0.00 3.68
802 803 1.055085 GCGTTGTATTTTTGCGCGC 59.945 52.632 27.26 27.26 38.75 6.86
803 804 1.334288 GCGTTGTATTTTTGCGCGCT 61.334 50.000 33.29 14.40 40.19 5.92
804 805 0.358549 CGTTGTATTTTTGCGCGCTG 59.641 50.000 33.29 0.00 0.00 5.18
805 806 0.091176 GTTGTATTTTTGCGCGCTGC 59.909 50.000 33.29 15.60 46.70 5.25
806 807 0.039617 TTGTATTTTTGCGCGCTGCT 60.040 45.000 33.29 14.39 46.63 4.24
807 808 0.728803 TGTATTTTTGCGCGCTGCTG 60.729 50.000 33.29 0.80 46.63 4.41
808 809 1.154054 TATTTTTGCGCGCTGCTGG 60.154 52.632 33.29 0.43 46.63 4.85
809 810 1.581727 TATTTTTGCGCGCTGCTGGA 61.582 50.000 33.29 13.45 46.63 3.86
810 811 2.807631 ATTTTTGCGCGCTGCTGGAG 62.808 55.000 33.29 0.00 46.63 3.86
831 832 4.058206 CGCGCGCGCTGCATTATA 62.058 61.111 45.97 0.00 46.97 0.98
832 833 2.202096 GCGCGCGCTGCATTATAG 60.202 61.111 44.38 15.91 46.97 1.31
833 834 2.202096 CGCGCGCTGCATTATAGC 60.202 61.111 30.48 6.56 46.97 2.97
839 840 3.957260 CTGCATTATAGCGCGGCT 58.043 55.556 8.83 8.38 43.41 5.52
840 841 1.494628 CTGCATTATAGCGCGGCTG 59.505 57.895 8.83 0.53 40.10 4.85
841 842 1.904852 CTGCATTATAGCGCGGCTGG 61.905 60.000 8.83 0.00 40.10 4.85
842 843 1.961277 GCATTATAGCGCGGCTGGT 60.961 57.895 8.83 0.00 40.10 4.00
843 844 0.669318 GCATTATAGCGCGGCTGGTA 60.669 55.000 8.83 2.37 40.10 3.25
844 845 1.350193 CATTATAGCGCGGCTGGTAG 58.650 55.000 8.83 0.00 40.10 3.18
845 846 1.067846 CATTATAGCGCGGCTGGTAGA 60.068 52.381 8.83 0.00 40.10 2.59
846 847 0.596577 TTATAGCGCGGCTGGTAGAG 59.403 55.000 8.83 0.00 40.10 2.43
873 874 4.811761 GCGGCCGCGCTAAACAAG 62.812 66.667 37.24 0.00 0.00 3.16
874 875 3.419759 CGGCCGCGCTAAACAAGT 61.420 61.111 14.67 0.00 0.00 3.16
875 876 2.479198 GGCCGCGCTAAACAAGTC 59.521 61.111 5.56 0.00 0.00 3.01
876 877 2.033194 GGCCGCGCTAAACAAGTCT 61.033 57.895 5.56 0.00 0.00 3.24
877 878 0.738412 GGCCGCGCTAAACAAGTCTA 60.738 55.000 5.56 0.00 0.00 2.59
878 879 1.073177 GCCGCGCTAAACAAGTCTAA 58.927 50.000 5.56 0.00 0.00 2.10
879 880 1.060698 GCCGCGCTAAACAAGTCTAAG 59.939 52.381 5.56 0.00 0.00 2.18
880 881 2.334838 CCGCGCTAAACAAGTCTAAGT 58.665 47.619 5.56 0.00 0.00 2.24
881 882 2.092211 CCGCGCTAAACAAGTCTAAGTG 59.908 50.000 5.56 0.00 0.00 3.16
882 883 2.472397 CGCGCTAAACAAGTCTAAGTGC 60.472 50.000 5.56 0.00 39.65 4.40
883 884 2.472397 GCGCTAAACAAGTCTAAGTGCG 60.472 50.000 0.00 0.00 43.05 5.34
884 885 2.472397 CGCTAAACAAGTCTAAGTGCGC 60.472 50.000 0.00 0.00 34.80 6.09
885 886 2.472397 GCTAAACAAGTCTAAGTGCGCG 60.472 50.000 0.00 0.00 0.00 6.86
886 887 0.234884 AAACAAGTCTAAGTGCGCGC 59.765 50.000 27.26 27.26 0.00 6.86
887 888 1.886861 AACAAGTCTAAGTGCGCGCG 61.887 55.000 28.44 28.44 0.00 6.86
888 889 2.809601 AAGTCTAAGTGCGCGCGG 60.810 61.111 33.06 13.92 0.00 6.46
900 901 3.660111 GCGCGGCAAACAGGTTCT 61.660 61.111 8.83 0.00 0.00 3.01
901 902 3.030652 CGCGGCAAACAGGTTCTT 58.969 55.556 0.00 0.00 0.00 2.52
902 903 1.358759 CGCGGCAAACAGGTTCTTT 59.641 52.632 0.00 0.00 0.00 2.52
903 904 0.589223 CGCGGCAAACAGGTTCTTTA 59.411 50.000 0.00 0.00 0.00 1.85
904 905 1.662026 CGCGGCAAACAGGTTCTTTAC 60.662 52.381 0.00 0.00 0.00 2.01
905 906 1.662026 GCGGCAAACAGGTTCTTTACG 60.662 52.381 0.00 0.00 0.00 3.18
906 907 1.662026 CGGCAAACAGGTTCTTTACGC 60.662 52.381 0.00 0.00 0.00 4.42
907 908 1.335496 GGCAAACAGGTTCTTTACGCA 59.665 47.619 0.00 0.00 0.00 5.24
908 909 2.381589 GCAAACAGGTTCTTTACGCAC 58.618 47.619 0.00 0.00 0.00 5.34
909 910 2.635444 CAAACAGGTTCTTTACGCACG 58.365 47.619 0.00 0.00 0.00 5.34
910 911 1.223187 AACAGGTTCTTTACGCACGG 58.777 50.000 0.00 0.00 0.00 4.94
911 912 1.226030 ACAGGTTCTTTACGCACGGC 61.226 55.000 0.00 0.00 0.00 5.68
930 931 2.048222 CGAAGCTCGGCTGTTGGA 60.048 61.111 0.00 0.00 39.62 3.53
931 932 2.097038 CGAAGCTCGGCTGTTGGAG 61.097 63.158 0.00 0.00 39.62 3.86
932 933 1.293498 GAAGCTCGGCTGTTGGAGA 59.707 57.895 0.00 0.00 39.62 3.71
933 934 0.107945 GAAGCTCGGCTGTTGGAGAT 60.108 55.000 0.00 0.00 39.62 2.75
934 935 0.392193 AAGCTCGGCTGTTGGAGATG 60.392 55.000 0.00 0.00 39.62 2.90
935 936 2.467826 GCTCGGCTGTTGGAGATGC 61.468 63.158 0.00 0.00 31.90 3.91
936 937 1.220206 CTCGGCTGTTGGAGATGCT 59.780 57.895 0.00 0.00 31.90 3.79
946 947 3.773667 TGTTGGAGATGCTCTGAGAATCT 59.226 43.478 25.03 25.03 43.33 2.40
1003 1012 1.968017 CACGAGCCACAAGCCATGT 60.968 57.895 0.00 0.00 45.47 3.21
1011 1020 0.538057 CACAAGCCATGTCCACCACT 60.538 55.000 0.00 0.00 41.46 4.00
1017 1026 2.578021 AGCCATGTCCACCACTAAGATT 59.422 45.455 0.00 0.00 0.00 2.40
1094 1106 0.846427 TGGGCACTGATCCCTCCTTT 60.846 55.000 9.60 0.00 44.23 3.11
1167 1180 2.504244 GACTCCTTCGCCGACACG 60.504 66.667 0.00 0.00 0.00 4.49
1212 1225 3.441290 AGCTCCGTCTTCGACCCG 61.441 66.667 0.00 0.00 39.71 5.28
1213 1226 3.745803 GCTCCGTCTTCGACCCGT 61.746 66.667 0.00 0.00 39.71 5.28
1245 1258 0.613777 CCTACGGCTCCACCTTCTTT 59.386 55.000 0.00 0.00 35.61 2.52
1315 1331 1.079127 GGTACACATGCGCACTCCT 60.079 57.895 14.90 0.00 0.00 3.69
1317 1333 0.389817 GTACACATGCGCACTCCTCA 60.390 55.000 14.90 0.00 0.00 3.86
1318 1334 0.108662 TACACATGCGCACTCCTCAG 60.109 55.000 14.90 0.74 0.00 3.35
1319 1335 1.375140 CACATGCGCACTCCTCAGT 60.375 57.895 14.90 0.00 0.00 3.41
1320 1336 0.952497 CACATGCGCACTCCTCAGTT 60.952 55.000 14.90 0.00 0.00 3.16
1321 1337 0.608130 ACATGCGCACTCCTCAGTTA 59.392 50.000 14.90 0.00 0.00 2.24
1331 1347 4.573900 CACTCCTCAGTTAGTCATGCTTT 58.426 43.478 0.00 0.00 0.00 3.51
1332 1348 4.999950 CACTCCTCAGTTAGTCATGCTTTT 59.000 41.667 0.00 0.00 0.00 2.27
1395 1430 3.054503 CTTGCAGCTCAGCGCCTT 61.055 61.111 2.29 0.00 40.39 4.35
1513 1563 1.153066 TTCCACGGCAGCAAGTTCA 60.153 52.632 0.00 0.00 0.00 3.18
1514 1564 0.537143 TTCCACGGCAGCAAGTTCAT 60.537 50.000 0.00 0.00 0.00 2.57
1516 1566 0.314935 CCACGGCAGCAAGTTCATTT 59.685 50.000 0.00 0.00 0.00 2.32
1527 1577 4.160252 AGCAAGTTCATTTTCAACACCAGT 59.840 37.500 0.00 0.00 0.00 4.00
1815 7732 2.167281 CGTTCCAGATGTGATCAGGACT 59.833 50.000 0.00 0.00 43.58 3.85
1843 7770 1.072489 TGGCCATCGAGGTACAACAAA 59.928 47.619 0.00 0.00 40.61 2.83
1844 7771 1.467342 GGCCATCGAGGTACAACAAAC 59.533 52.381 0.00 0.00 40.61 2.93
1845 7772 2.147958 GCCATCGAGGTACAACAAACA 58.852 47.619 0.00 0.00 40.61 2.83
1846 7773 2.550606 GCCATCGAGGTACAACAAACAA 59.449 45.455 0.00 0.00 40.61 2.83
1858 7785 6.362283 GGTACAACAAACAATGTCAATGTAGC 59.638 38.462 11.79 11.79 42.99 3.58
1859 7786 5.900425 ACAACAAACAATGTCAATGTAGCA 58.100 33.333 0.00 0.00 42.99 3.49
1860 7787 6.336566 ACAACAAACAATGTCAATGTAGCAA 58.663 32.000 0.00 0.00 42.99 3.91
1895 7822 3.911868 TGCATTGCAGAAATGGTAACAC 58.088 40.909 7.38 0.00 45.05 3.32
1916 7850 1.066716 AGGCAGTTTACGCGGTATTGA 60.067 47.619 12.47 0.00 0.00 2.57
1917 7851 1.937899 GGCAGTTTACGCGGTATTGAT 59.062 47.619 12.47 0.00 0.00 2.57
1971 7905 2.973316 GCACGGGGCGACGAATTTT 61.973 57.895 0.00 0.00 37.61 1.82
1980 7914 1.265905 GCGACGAATTTTGTGGTTCCT 59.734 47.619 0.00 0.00 0.00 3.36
2135 8069 2.129555 GAGGCCCTTGACAAGCTCCA 62.130 60.000 19.63 0.00 0.00 3.86
2451 8385 1.198408 CTTACCGCTACATCGCCGATA 59.802 52.381 0.00 0.00 0.00 2.92
2617 8561 5.361571 CACTGGAAATGGAATGGAATCATGA 59.638 40.000 0.00 0.00 33.18 3.07
2663 8608 2.049156 CACGCTGAACTCCGAGCA 60.049 61.111 0.00 0.00 34.69 4.26
3040 10528 2.608506 GCGGTAAACAATGGGAAACACC 60.609 50.000 0.00 0.00 38.08 4.16
3043 10531 0.031449 AAACAATGGGAAACACCGCG 59.969 50.000 0.00 0.00 40.11 6.46
3060 10548 2.030457 CCGCGTCAAACATAAGGCTTAG 59.970 50.000 13.15 7.50 0.00 2.18
3142 10631 7.299787 TCATATCATATCTTGCGCTCAATTC 57.700 36.000 9.73 0.00 0.00 2.17
3256 11079 5.500645 AAACAGCTTTTCCACAAGTCTAC 57.499 39.130 0.00 0.00 0.00 2.59
3259 11082 5.193679 ACAGCTTTTCCACAAGTCTACTTT 58.806 37.500 0.00 0.00 33.11 2.66
3261 11084 6.152831 ACAGCTTTTCCACAAGTCTACTTTTT 59.847 34.615 0.00 0.00 33.11 1.94
3283 11106 8.558973 TTTTTGTCCATTTTGATGACAAGTTT 57.441 26.923 0.00 0.00 37.13 2.66
3284 11107 8.558973 TTTTGTCCATTTTGATGACAAGTTTT 57.441 26.923 0.00 0.00 37.13 2.43
3286 11109 7.769272 TGTCCATTTTGATGACAAGTTTTTC 57.231 32.000 0.00 0.00 37.32 2.29
3287 11110 6.760770 TGTCCATTTTGATGACAAGTTTTTCC 59.239 34.615 0.00 0.00 37.32 3.13
3289 11112 5.177327 CCATTTTGATGACAAGTTTTTCCGG 59.823 40.000 0.00 0.00 37.32 5.14
3291 11114 4.561735 TTGATGACAAGTTTTTCCGGAC 57.438 40.909 1.83 0.00 0.00 4.79
3292 11115 2.546368 TGATGACAAGTTTTTCCGGACG 59.454 45.455 1.83 0.00 0.00 4.79
3293 11116 1.301423 TGACAAGTTTTTCCGGACGG 58.699 50.000 1.83 3.96 0.00 4.79
3295 11118 1.529865 GACAAGTTTTTCCGGACGGAG 59.470 52.381 13.64 3.15 46.06 4.63
3296 11119 0.872388 CAAGTTTTTCCGGACGGAGG 59.128 55.000 13.64 0.00 46.06 4.30
3298 11121 1.123246 AGTTTTTCCGGACGGAGGGA 61.123 55.000 13.64 1.83 46.06 4.20
3320 11313 6.460953 GGGAGTAACAAATTGCAGTTCAGAAA 60.461 38.462 0.00 0.00 0.00 2.52
3427 12586 1.947456 ACGAAGCTTTTGGTCCTTCAC 59.053 47.619 0.00 0.00 35.80 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.258774 AGGAGGAGAGGAGAGAGTGC 59.741 60.000 0.00 0.00 0.00 4.40
53 54 4.208686 GCGTGGCGTAGGAGGAGG 62.209 72.222 0.00 0.00 0.00 4.30
88 89 4.802051 CGTCCATGGGTGGCAGGG 62.802 72.222 13.02 0.00 45.63 4.45
534 535 3.350612 TTTTGACCTTCGGCCGCG 61.351 61.111 23.51 14.10 0.00 6.46
535 536 1.862602 ATGTTTTGACCTTCGGCCGC 61.863 55.000 23.51 6.50 0.00 6.53
536 537 0.168128 GATGTTTTGACCTTCGGCCG 59.832 55.000 22.12 22.12 0.00 6.13
537 538 0.526211 GGATGTTTTGACCTTCGGCC 59.474 55.000 0.00 0.00 0.00 6.13
538 539 0.168128 CGGATGTTTTGACCTTCGGC 59.832 55.000 0.00 0.00 0.00 5.54
539 540 0.168128 GCGGATGTTTTGACCTTCGG 59.832 55.000 0.00 0.00 0.00 4.30
540 541 0.179225 CGCGGATGTTTTGACCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
546 547 2.761559 TCTTCTTCGCGGATGTTTTGA 58.238 42.857 6.13 0.00 0.00 2.69
593 594 2.656069 CCTTTCCCCTCGCCTTCGA 61.656 63.158 0.00 0.00 43.28 3.71
594 595 2.125106 CCTTTCCCCTCGCCTTCG 60.125 66.667 0.00 0.00 0.00 3.79
595 596 0.393132 CTTCCTTTCCCCTCGCCTTC 60.393 60.000 0.00 0.00 0.00 3.46
596 597 1.685820 CTTCCTTTCCCCTCGCCTT 59.314 57.895 0.00 0.00 0.00 4.35
597 598 2.972819 GCTTCCTTTCCCCTCGCCT 61.973 63.158 0.00 0.00 0.00 5.52
598 599 2.438614 GCTTCCTTTCCCCTCGCC 60.439 66.667 0.00 0.00 0.00 5.54
599 600 1.002011 AAGCTTCCTTTCCCCTCGC 60.002 57.895 0.00 0.00 0.00 5.03
600 601 1.308783 GCAAGCTTCCTTTCCCCTCG 61.309 60.000 0.00 0.00 0.00 4.63
601 602 0.251341 TGCAAGCTTCCTTTCCCCTC 60.251 55.000 0.00 0.00 0.00 4.30
602 603 0.251519 CTGCAAGCTTCCTTTCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
603 604 1.253593 CCTGCAAGCTTCCTTTCCCC 61.254 60.000 0.00 0.00 0.00 4.81
604 605 1.253593 CCCTGCAAGCTTCCTTTCCC 61.254 60.000 0.00 0.00 0.00 3.97
605 606 1.881903 GCCCTGCAAGCTTCCTTTCC 61.882 60.000 0.00 0.00 0.00 3.13
606 607 1.588597 GCCCTGCAAGCTTCCTTTC 59.411 57.895 0.00 0.00 0.00 2.62
607 608 2.270986 CGCCCTGCAAGCTTCCTTT 61.271 57.895 0.00 0.00 0.00 3.11
608 609 2.674380 CGCCCTGCAAGCTTCCTT 60.674 61.111 0.00 0.00 0.00 3.36
609 610 2.983725 AAACGCCCTGCAAGCTTCCT 62.984 55.000 0.00 0.00 0.00 3.36
610 611 2.564721 AAACGCCCTGCAAGCTTCC 61.565 57.895 0.00 0.00 0.00 3.46
611 612 1.372128 CAAACGCCCTGCAAGCTTC 60.372 57.895 0.00 0.00 0.00 3.86
612 613 1.181098 ATCAAACGCCCTGCAAGCTT 61.181 50.000 6.80 0.00 0.00 3.74
613 614 1.604593 ATCAAACGCCCTGCAAGCT 60.605 52.632 6.80 0.00 0.00 3.74
614 615 1.444895 CATCAAACGCCCTGCAAGC 60.445 57.895 0.00 0.00 0.00 4.01
615 616 1.213537 CCATCAAACGCCCTGCAAG 59.786 57.895 0.00 0.00 0.00 4.01
616 617 2.274645 CCCATCAAACGCCCTGCAA 61.275 57.895 0.00 0.00 0.00 4.08
617 618 2.676121 CCCATCAAACGCCCTGCA 60.676 61.111 0.00 0.00 0.00 4.41
618 619 4.133796 GCCCATCAAACGCCCTGC 62.134 66.667 0.00 0.00 0.00 4.85
619 620 3.814268 CGCCCATCAAACGCCCTG 61.814 66.667 0.00 0.00 0.00 4.45
643 644 4.170062 TCGTCGGCGCTTCGGTAG 62.170 66.667 3.52 0.00 38.14 3.18
644 645 4.170062 CTCGTCGGCGCTTCGGTA 62.170 66.667 3.52 0.00 38.14 4.02
648 649 4.778415 TGAGCTCGTCGGCGCTTC 62.778 66.667 3.52 2.28 36.45 3.86
649 650 3.649277 AATGAGCTCGTCGGCGCTT 62.649 57.895 9.35 0.00 36.45 4.68
650 651 4.135153 AATGAGCTCGTCGGCGCT 62.135 61.111 9.35 9.23 39.61 5.92
651 652 3.918220 CAATGAGCTCGTCGGCGC 61.918 66.667 9.35 0.00 38.14 6.53
652 653 3.918220 GCAATGAGCTCGTCGGCG 61.918 66.667 9.35 1.15 41.15 6.46
653 654 1.709147 AATGCAATGAGCTCGTCGGC 61.709 55.000 20.10 20.10 45.94 5.54
654 655 0.729116 AAATGCAATGAGCTCGTCGG 59.271 50.000 9.35 6.06 45.94 4.79
655 656 2.159667 TCAAAATGCAATGAGCTCGTCG 60.160 45.455 9.35 0.00 45.94 5.12
656 657 3.476295 TCAAAATGCAATGAGCTCGTC 57.524 42.857 9.35 0.00 45.94 4.20
657 658 3.441222 TGATCAAAATGCAATGAGCTCGT 59.559 39.130 9.64 5.78 45.94 4.18
658 659 4.023739 TGATCAAAATGCAATGAGCTCG 57.976 40.909 9.64 0.00 45.94 5.03
659 660 5.408356 AGTTGATCAAAATGCAATGAGCTC 58.592 37.500 10.35 6.82 45.94 4.09
660 661 5.401531 AGTTGATCAAAATGCAATGAGCT 57.598 34.783 10.35 0.00 45.94 4.09
661 662 5.407387 ACAAGTTGATCAAAATGCAATGAGC 59.593 36.000 10.35 8.34 45.96 4.26
662 663 7.416154 AACAAGTTGATCAAAATGCAATGAG 57.584 32.000 10.35 0.00 0.00 2.90
663 664 7.280428 ACAAACAAGTTGATCAAAATGCAATGA 59.720 29.630 10.35 0.00 39.87 2.57
664 665 7.374754 CACAAACAAGTTGATCAAAATGCAATG 59.625 33.333 10.35 12.93 39.87 2.82
665 666 7.066043 ACACAAACAAGTTGATCAAAATGCAAT 59.934 29.630 10.35 0.44 39.87 3.56
666 667 6.370994 ACACAAACAAGTTGATCAAAATGCAA 59.629 30.769 10.35 0.00 39.87 4.08
667 668 5.873712 ACACAAACAAGTTGATCAAAATGCA 59.126 32.000 10.35 0.00 39.87 3.96
668 669 6.035866 TGACACAAACAAGTTGATCAAAATGC 59.964 34.615 10.35 0.00 39.87 3.56
669 670 7.522901 TGACACAAACAAGTTGATCAAAATG 57.477 32.000 10.35 14.08 39.87 2.32
670 671 8.545229 TTTGACACAAACAAGTTGATCAAAAT 57.455 26.923 10.35 0.00 44.07 1.82
671 672 7.953158 TTTGACACAAACAAGTTGATCAAAA 57.047 28.000 10.35 0.00 44.07 2.44
672 673 8.545229 AATTTGACACAAACAAGTTGATCAAA 57.455 26.923 10.35 17.32 46.94 2.69
673 674 8.545229 AAATTTGACACAAACAAGTTGATCAA 57.455 26.923 10.54 3.38 40.69 2.57
674 675 7.816513 TGAAATTTGACACAAACAAGTTGATCA 59.183 29.630 10.54 0.00 39.87 2.92
675 676 8.110002 GTGAAATTTGACACAAACAAGTTGATC 58.890 33.333 10.54 0.00 39.87 2.92
676 677 7.201427 CGTGAAATTTGACACAAACAAGTTGAT 60.201 33.333 10.54 0.00 39.87 2.57
677 678 6.088749 CGTGAAATTTGACACAAACAAGTTGA 59.911 34.615 10.54 0.00 39.87 3.18
678 679 6.128956 ACGTGAAATTTGACACAAACAAGTTG 60.129 34.615 8.53 0.00 43.43 3.16
679 680 5.923684 ACGTGAAATTTGACACAAACAAGTT 59.076 32.000 8.53 0.00 36.91 2.66
680 681 5.344665 CACGTGAAATTTGACACAAACAAGT 59.655 36.000 10.90 0.00 36.91 3.16
681 682 5.344665 ACACGTGAAATTTGACACAAACAAG 59.655 36.000 25.01 0.00 36.91 3.16
682 683 5.223382 ACACGTGAAATTTGACACAAACAA 58.777 33.333 25.01 0.00 36.91 2.83
683 684 4.799678 ACACGTGAAATTTGACACAAACA 58.200 34.783 25.01 0.00 36.91 2.83
684 685 5.343593 TGAACACGTGAAATTTGACACAAAC 59.656 36.000 25.01 0.00 36.91 2.93
685 686 5.461526 TGAACACGTGAAATTTGACACAAA 58.538 33.333 25.01 0.00 36.91 2.83
686 687 5.048153 TGAACACGTGAAATTTGACACAA 57.952 34.783 25.01 0.00 36.91 3.33
687 688 4.686839 TGAACACGTGAAATTTGACACA 57.313 36.364 25.01 0.00 36.91 3.72
688 689 5.554324 GCAATGAACACGTGAAATTTGACAC 60.554 40.000 25.01 4.49 0.00 3.67
689 690 4.502282 GCAATGAACACGTGAAATTTGACA 59.498 37.500 25.01 9.85 0.00 3.58
690 691 4.502282 TGCAATGAACACGTGAAATTTGAC 59.498 37.500 25.01 14.87 0.00 3.18
691 692 4.676546 TGCAATGAACACGTGAAATTTGA 58.323 34.783 25.01 0.00 0.00 2.69
692 693 5.579384 ATGCAATGAACACGTGAAATTTG 57.421 34.783 25.01 19.28 0.00 2.32
693 694 6.561902 CGAAATGCAATGAACACGTGAAATTT 60.562 34.615 25.01 14.02 0.00 1.82
694 695 5.107913 CGAAATGCAATGAACACGTGAAATT 60.108 36.000 25.01 14.96 0.00 1.82
695 696 4.382457 CGAAATGCAATGAACACGTGAAAT 59.618 37.500 25.01 9.50 0.00 2.17
696 697 3.728221 CGAAATGCAATGAACACGTGAAA 59.272 39.130 25.01 7.33 0.00 2.69
697 698 3.002759 TCGAAATGCAATGAACACGTGAA 59.997 39.130 25.01 7.73 0.00 3.18
698 699 2.545946 TCGAAATGCAATGAACACGTGA 59.454 40.909 25.01 0.00 0.00 4.35
699 700 2.914861 TCGAAATGCAATGAACACGTG 58.085 42.857 15.48 15.48 0.00 4.49
700 701 3.188254 TCATCGAAATGCAATGAACACGT 59.812 39.130 0.00 0.00 32.58 4.49
701 702 3.746089 TCATCGAAATGCAATGAACACG 58.254 40.909 0.00 0.00 32.58 4.49
702 703 5.574055 ACATTCATCGAAATGCAATGAACAC 59.426 36.000 11.86 0.00 40.95 3.32
703 704 5.712004 ACATTCATCGAAATGCAATGAACA 58.288 33.333 11.86 0.00 40.95 3.18
704 705 6.636666 AACATTCATCGAAATGCAATGAAC 57.363 33.333 11.86 0.00 40.95 3.18
705 706 6.867293 TGAAACATTCATCGAAATGCAATGAA 59.133 30.769 11.98 11.98 41.99 2.57
706 707 6.388278 TGAAACATTCATCGAAATGCAATGA 58.612 32.000 9.28 0.00 39.72 2.57
707 708 6.635166 TGAAACATTCATCGAAATGCAATG 57.365 33.333 9.28 8.77 39.72 2.82
708 709 7.385752 AGTTTGAAACATTCATCGAAATGCAAT 59.614 29.630 11.02 0.00 39.72 3.56
709 710 6.700960 AGTTTGAAACATTCATCGAAATGCAA 59.299 30.769 11.02 4.24 39.72 4.08
710 711 6.215121 AGTTTGAAACATTCATCGAAATGCA 58.785 32.000 11.02 0.00 39.72 3.96
711 712 6.363088 TGAGTTTGAAACATTCATCGAAATGC 59.637 34.615 11.02 0.00 39.72 3.56
712 713 7.856492 TGAGTTTGAAACATTCATCGAAATG 57.144 32.000 11.02 8.04 39.84 2.32
713 714 9.480053 AAATGAGTTTGAAACATTCATCGAAAT 57.520 25.926 11.02 0.00 39.84 2.17
714 715 8.870160 AAATGAGTTTGAAACATTCATCGAAA 57.130 26.923 11.02 0.00 39.84 3.46
715 716 8.870160 AAAATGAGTTTGAAACATTCATCGAA 57.130 26.923 11.02 0.00 39.84 3.71
738 739 7.180322 ACATATATGGCATTTTGGACACAAA 57.820 32.000 16.96 0.00 44.40 2.83
739 740 6.788598 ACATATATGGCATTTTGGACACAA 57.211 33.333 16.96 0.00 34.07 3.33
740 741 6.788598 AACATATATGGCATTTTGGACACA 57.211 33.333 16.96 0.00 0.00 3.72
741 742 9.762933 ATTTAACATATATGGCATTTTGGACAC 57.237 29.630 16.96 0.00 0.00 3.67
742 743 9.761504 CATTTAACATATATGGCATTTTGGACA 57.238 29.630 16.96 0.00 0.00 4.02
743 744 9.762933 ACATTTAACATATATGGCATTTTGGAC 57.237 29.630 16.96 0.00 0.00 4.02
744 745 9.979578 GACATTTAACATATATGGCATTTTGGA 57.020 29.630 16.96 0.00 0.00 3.53
745 746 9.206870 GGACATTTAACATATATGGCATTTTGG 57.793 33.333 16.96 0.00 28.06 3.28
746 747 8.914654 CGGACATTTAACATATATGGCATTTTG 58.085 33.333 16.96 3.88 28.06 2.44
747 748 8.087750 CCGGACATTTAACATATATGGCATTTT 58.912 33.333 16.96 4.47 28.06 1.82
748 749 7.601856 CCGGACATTTAACATATATGGCATTT 58.398 34.615 16.96 0.00 28.06 2.32
749 750 6.350110 GCCGGACATTTAACATATATGGCATT 60.350 38.462 16.96 5.15 28.06 3.56
750 751 5.125417 GCCGGACATTTAACATATATGGCAT 59.875 40.000 16.96 4.88 28.06 4.40
751 752 4.457603 GCCGGACATTTAACATATATGGCA 59.542 41.667 16.96 0.00 28.06 4.92
752 753 4.436852 CGCCGGACATTTAACATATATGGC 60.437 45.833 16.96 5.14 0.00 4.40
753 754 4.932799 TCGCCGGACATTTAACATATATGG 59.067 41.667 16.96 0.69 0.00 2.74
754 755 5.637810 ACTCGCCGGACATTTAACATATATG 59.362 40.000 5.05 11.29 0.00 1.78
755 756 5.790593 ACTCGCCGGACATTTAACATATAT 58.209 37.500 5.05 0.00 0.00 0.86
756 757 5.204409 ACTCGCCGGACATTTAACATATA 57.796 39.130 5.05 0.00 0.00 0.86
757 758 4.056050 GACTCGCCGGACATTTAACATAT 58.944 43.478 5.05 0.00 0.00 1.78
758 759 3.450578 GACTCGCCGGACATTTAACATA 58.549 45.455 5.05 0.00 0.00 2.29
759 760 2.277084 GACTCGCCGGACATTTAACAT 58.723 47.619 5.05 0.00 0.00 2.71
760 761 1.717194 GACTCGCCGGACATTTAACA 58.283 50.000 5.05 0.00 0.00 2.41
761 762 0.643820 CGACTCGCCGGACATTTAAC 59.356 55.000 5.05 0.00 0.00 2.01
762 763 3.038946 CGACTCGCCGGACATTTAA 57.961 52.632 5.05 0.00 0.00 1.52
763 764 4.798288 CGACTCGCCGGACATTTA 57.202 55.556 5.05 0.00 0.00 1.40
780 781 1.055085 GCAAAAATACAACGCGCGC 59.945 52.632 32.58 23.91 0.00 6.86
781 782 1.332257 CGCAAAAATACAACGCGCG 59.668 52.632 30.96 30.96 39.43 6.86
784 785 1.055085 GCGCGCAAAAATACAACGC 59.945 52.632 29.10 0.00 45.72 4.84
785 786 0.358549 CAGCGCGCAAAAATACAACG 59.641 50.000 35.10 2.17 0.00 4.10
786 787 0.091176 GCAGCGCGCAAAAATACAAC 59.909 50.000 35.10 5.48 41.79 3.32
787 788 0.039617 AGCAGCGCGCAAAAATACAA 60.040 45.000 35.10 0.00 46.13 2.41
788 789 0.728803 CAGCAGCGCGCAAAAATACA 60.729 50.000 35.10 0.00 46.13 2.29
789 790 1.405469 CCAGCAGCGCGCAAAAATAC 61.405 55.000 35.10 13.50 46.13 1.89
790 791 1.154054 CCAGCAGCGCGCAAAAATA 60.154 52.632 35.10 0.00 46.13 1.40
791 792 2.431260 CCAGCAGCGCGCAAAAAT 60.431 55.556 35.10 9.38 46.13 1.82
792 793 3.541093 CTCCAGCAGCGCGCAAAAA 62.541 57.895 35.10 12.17 46.13 1.94
793 794 4.029186 CTCCAGCAGCGCGCAAAA 62.029 61.111 35.10 11.03 46.13 2.44
814 815 3.947255 CTATAATGCAGCGCGCGCG 62.947 63.158 45.73 45.73 46.97 6.86
815 816 2.202096 CTATAATGCAGCGCGCGC 60.202 61.111 45.10 45.10 46.97 6.86
816 817 2.202096 GCTATAATGCAGCGCGCG 60.202 61.111 28.44 28.44 46.97 6.86
821 822 2.174349 GCCGCGCTATAATGCAGC 59.826 61.111 5.56 0.00 35.61 5.25
822 823 1.494628 CAGCCGCGCTATAATGCAG 59.505 57.895 5.56 0.00 36.40 4.41
823 824 1.960763 CCAGCCGCGCTATAATGCA 60.961 57.895 5.56 0.00 36.40 3.96
824 825 0.669318 TACCAGCCGCGCTATAATGC 60.669 55.000 5.56 0.00 36.40 3.56
825 826 1.067846 TCTACCAGCCGCGCTATAATG 60.068 52.381 5.56 0.00 36.40 1.90
826 827 1.202582 CTCTACCAGCCGCGCTATAAT 59.797 52.381 5.56 0.00 36.40 1.28
827 828 0.596577 CTCTACCAGCCGCGCTATAA 59.403 55.000 5.56 0.00 36.40 0.98
828 829 1.863662 GCTCTACCAGCCGCGCTATA 61.864 60.000 5.56 0.00 43.17 1.31
829 830 3.043419 CTCTACCAGCCGCGCTAT 58.957 61.111 5.56 0.00 36.40 2.97
830 831 3.900892 GCTCTACCAGCCGCGCTA 61.901 66.667 5.56 0.00 43.17 4.26
857 858 3.362851 GACTTGTTTAGCGCGGCCG 62.363 63.158 24.05 24.05 37.57 6.13
858 859 0.738412 TAGACTTGTTTAGCGCGGCC 60.738 55.000 8.83 0.00 0.00 6.13
859 860 1.060698 CTTAGACTTGTTTAGCGCGGC 59.939 52.381 8.83 0.00 0.00 6.53
860 861 2.092211 CACTTAGACTTGTTTAGCGCGG 59.908 50.000 8.83 0.00 0.00 6.46
861 862 2.472397 GCACTTAGACTTGTTTAGCGCG 60.472 50.000 0.00 0.00 0.00 6.86
862 863 2.472397 CGCACTTAGACTTGTTTAGCGC 60.472 50.000 0.00 0.00 36.16 5.92
863 864 2.472397 GCGCACTTAGACTTGTTTAGCG 60.472 50.000 0.30 0.00 44.77 4.26
864 865 2.472397 CGCGCACTTAGACTTGTTTAGC 60.472 50.000 8.75 0.00 0.00 3.09
865 866 2.472397 GCGCGCACTTAGACTTGTTTAG 60.472 50.000 29.10 0.00 0.00 1.85
866 867 1.458064 GCGCGCACTTAGACTTGTTTA 59.542 47.619 29.10 0.00 0.00 2.01
867 868 0.234884 GCGCGCACTTAGACTTGTTT 59.765 50.000 29.10 0.00 0.00 2.83
868 869 1.860078 GCGCGCACTTAGACTTGTT 59.140 52.632 29.10 0.00 0.00 2.83
869 870 2.372690 CGCGCGCACTTAGACTTGT 61.373 57.895 32.61 0.00 0.00 3.16
870 871 2.391821 CGCGCGCACTTAGACTTG 59.608 61.111 32.61 6.38 0.00 3.16
871 872 2.809601 CCGCGCGCACTTAGACTT 60.810 61.111 32.61 0.00 0.00 3.01
883 884 2.677573 AAAGAACCTGTTTGCCGCGC 62.678 55.000 0.00 0.00 0.00 6.86
884 885 0.589223 TAAAGAACCTGTTTGCCGCG 59.411 50.000 0.00 0.00 0.00 6.46
885 886 1.662026 CGTAAAGAACCTGTTTGCCGC 60.662 52.381 0.00 0.00 0.00 6.53
886 887 1.662026 GCGTAAAGAACCTGTTTGCCG 60.662 52.381 0.00 0.00 0.00 5.69
887 888 1.335496 TGCGTAAAGAACCTGTTTGCC 59.665 47.619 0.00 0.00 0.00 4.52
888 889 2.381589 GTGCGTAAAGAACCTGTTTGC 58.618 47.619 0.00 0.00 0.00 3.68
889 890 2.601266 CCGTGCGTAAAGAACCTGTTTG 60.601 50.000 0.00 0.00 0.00 2.93
890 891 1.600485 CCGTGCGTAAAGAACCTGTTT 59.400 47.619 0.00 0.00 0.00 2.83
891 892 1.223187 CCGTGCGTAAAGAACCTGTT 58.777 50.000 0.00 0.00 0.00 3.16
892 893 1.226030 GCCGTGCGTAAAGAACCTGT 61.226 55.000 0.00 0.00 0.00 4.00
893 894 1.495951 GCCGTGCGTAAAGAACCTG 59.504 57.895 0.00 0.00 0.00 4.00
894 895 3.961729 GCCGTGCGTAAAGAACCT 58.038 55.556 0.00 0.00 0.00 3.50
911 912 4.139420 CAACAGCCGAGCTTCGCG 62.139 66.667 0.00 0.00 38.82 5.87
912 913 3.793144 CCAACAGCCGAGCTTCGC 61.793 66.667 0.00 0.00 38.82 4.70
913 914 2.048222 TCCAACAGCCGAGCTTCG 60.048 61.111 0.00 0.00 36.40 3.79
914 915 0.107945 ATCTCCAACAGCCGAGCTTC 60.108 55.000 0.00 0.00 36.40 3.86
915 916 0.392193 CATCTCCAACAGCCGAGCTT 60.392 55.000 0.00 0.00 36.40 3.74
916 917 1.220206 CATCTCCAACAGCCGAGCT 59.780 57.895 0.00 0.00 40.77 4.09
917 918 2.467826 GCATCTCCAACAGCCGAGC 61.468 63.158 0.00 0.00 0.00 5.03
918 919 0.809241 GAGCATCTCCAACAGCCGAG 60.809 60.000 0.00 0.00 0.00 4.63
919 920 1.219124 GAGCATCTCCAACAGCCGA 59.781 57.895 0.00 0.00 0.00 5.54
920 921 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
931 932 3.740321 CGGCTTAAGATTCTCAGAGCATC 59.260 47.826 6.67 1.97 32.01 3.91
932 933 3.726607 CGGCTTAAGATTCTCAGAGCAT 58.273 45.455 6.67 0.00 32.01 3.79
933 934 2.739932 GCGGCTTAAGATTCTCAGAGCA 60.740 50.000 6.67 0.00 32.01 4.26
934 935 1.864082 GCGGCTTAAGATTCTCAGAGC 59.136 52.381 6.67 7.13 0.00 4.09
935 936 2.123342 CGCGGCTTAAGATTCTCAGAG 58.877 52.381 6.67 0.00 0.00 3.35
936 937 1.802880 GCGCGGCTTAAGATTCTCAGA 60.803 52.381 8.83 0.00 0.00 3.27
988 990 1.303561 TGGACATGGCTTGTGGCTC 60.304 57.895 11.09 0.00 39.18 4.70
1003 1012 2.819608 GCTTGCAAATCTTAGTGGTGGA 59.180 45.455 0.00 0.00 0.00 4.02
1315 1331 6.054941 TGTTGAGAAAAGCATGACTAACTGA 58.945 36.000 0.00 0.00 0.00 3.41
1317 1333 6.942532 TTGTTGAGAAAAGCATGACTAACT 57.057 33.333 0.00 0.00 0.00 2.24
1318 1334 7.196331 AGTTTGTTGAGAAAAGCATGACTAAC 58.804 34.615 0.00 0.00 0.00 2.34
1319 1335 7.333528 AGTTTGTTGAGAAAAGCATGACTAA 57.666 32.000 0.00 0.00 0.00 2.24
1320 1336 6.017109 GGAGTTTGTTGAGAAAAGCATGACTA 60.017 38.462 0.00 0.00 0.00 2.59
1321 1337 5.221126 GGAGTTTGTTGAGAAAAGCATGACT 60.221 40.000 0.00 0.00 0.00 3.41
1331 1347 5.059161 CAGATCAGTGGAGTTTGTTGAGAA 58.941 41.667 0.00 0.00 0.00 2.87
1332 1348 4.344968 TCAGATCAGTGGAGTTTGTTGAGA 59.655 41.667 0.00 0.00 0.00 3.27
1480 1515 1.964373 GGAAGAAAGCGGCGTCCAA 60.964 57.895 9.37 0.00 34.58 3.53
1513 1563 2.482839 CGCCCAAACTGGTGTTGAAAAT 60.483 45.455 0.00 0.00 35.17 1.82
1514 1564 1.134965 CGCCCAAACTGGTGTTGAAAA 60.135 47.619 0.00 0.00 35.17 2.29
1516 1566 0.681564 ACGCCCAAACTGGTGTTGAA 60.682 50.000 0.00 0.00 46.80 2.69
1527 1577 1.965930 CTGCAGCTGTACGCCCAAA 60.966 57.895 16.64 0.00 40.39 3.28
1843 7770 5.299028 TGACTTGTTGCTACATTGACATTGT 59.701 36.000 0.81 8.00 33.44 2.71
1844 7771 5.626543 GTGACTTGTTGCTACATTGACATTG 59.373 40.000 0.81 0.00 33.44 2.82
1845 7772 5.278463 GGTGACTTGTTGCTACATTGACATT 60.278 40.000 0.81 0.00 33.44 2.71
1846 7773 4.216257 GGTGACTTGTTGCTACATTGACAT 59.784 41.667 0.81 0.00 33.44 3.06
1858 7785 1.102154 TGCAGGTTGGTGACTTGTTG 58.898 50.000 0.00 0.00 37.64 3.33
1859 7786 2.071778 ATGCAGGTTGGTGACTTGTT 57.928 45.000 0.00 0.00 37.64 2.83
1860 7787 1.682854 CAATGCAGGTTGGTGACTTGT 59.317 47.619 0.00 0.00 37.64 3.16
1895 7822 1.062002 CAATACCGCGTAAACTGCCTG 59.938 52.381 4.92 0.00 0.00 4.85
1916 7850 7.180946 TCTGTTACCATTGCCATAGCTAGATAT 59.819 37.037 0.00 0.00 40.80 1.63
1917 7851 6.496911 TCTGTTACCATTGCCATAGCTAGATA 59.503 38.462 0.00 0.00 40.80 1.98
1971 7905 0.404040 GGATTGTCCCAGGAACCACA 59.596 55.000 0.00 0.00 0.00 4.17
2471 8405 1.376466 GCTCTGTCTTGCAGGGGAA 59.624 57.895 0.00 0.00 45.76 3.97
2617 8561 6.365970 TTCAGAGTCTTATCTTGGAGCTTT 57.634 37.500 0.00 0.00 0.00 3.51
2663 8608 7.225734 GGTTTTGTAACTTGCATGGTGTAATTT 59.774 33.333 0.00 0.00 34.59 1.82
3040 10528 2.671396 ACTAAGCCTTATGTTTGACGCG 59.329 45.455 3.53 3.53 0.00 6.01
3043 10531 7.683437 AACCTAACTAAGCCTTATGTTTGAC 57.317 36.000 5.16 0.00 0.00 3.18
3060 10548 2.857104 GCGGTGTTTGCAGAAACCTAAC 60.857 50.000 14.37 1.78 40.81 2.34
3171 10667 5.049474 TGTCCGTTCATCTTCAGAACAATTG 60.049 40.000 3.24 3.24 44.22 2.32
3259 11082 8.558973 AAAACTTGTCATCAAAATGGACAAAA 57.441 26.923 7.70 0.00 34.98 2.44
3261 11084 7.279758 GGAAAAACTTGTCATCAAAATGGACAA 59.720 33.333 0.00 0.00 34.59 3.18
3262 11085 6.760770 GGAAAAACTTGTCATCAAAATGGACA 59.239 34.615 0.00 0.00 33.42 4.02
3263 11086 6.074356 CGGAAAAACTTGTCATCAAAATGGAC 60.074 38.462 0.00 0.00 33.42 4.02
3264 11087 5.982516 CGGAAAAACTTGTCATCAAAATGGA 59.017 36.000 0.00 0.00 33.42 3.41
3268 11091 5.344884 GTCCGGAAAAACTTGTCATCAAAA 58.655 37.500 5.23 0.00 32.87 2.44
3269 11092 4.496673 CGTCCGGAAAAACTTGTCATCAAA 60.497 41.667 5.23 0.00 32.87 2.69
3270 11093 3.002862 CGTCCGGAAAAACTTGTCATCAA 59.997 43.478 5.23 0.00 0.00 2.57
3271 11094 2.546368 CGTCCGGAAAAACTTGTCATCA 59.454 45.455 5.23 0.00 0.00 3.07
3283 11106 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
3284 11107 0.967380 GTTACTCCCTCCGTCCGGAA 60.967 60.000 5.23 0.00 44.66 4.30
3286 11109 1.252904 TTGTTACTCCCTCCGTCCGG 61.253 60.000 0.00 0.00 0.00 5.14
3287 11110 0.604578 TTTGTTACTCCCTCCGTCCG 59.395 55.000 0.00 0.00 0.00 4.79
3289 11112 2.418976 GCAATTTGTTACTCCCTCCGTC 59.581 50.000 0.00 0.00 0.00 4.79
3291 11114 2.420022 CTGCAATTTGTTACTCCCTCCG 59.580 50.000 0.00 0.00 0.00 4.63
3292 11115 3.421844 ACTGCAATTTGTTACTCCCTCC 58.578 45.455 0.00 0.00 0.00 4.30
3293 11116 4.518970 TGAACTGCAATTTGTTACTCCCTC 59.481 41.667 0.00 0.00 0.00 4.30
3295 11118 4.518970 TCTGAACTGCAATTTGTTACTCCC 59.481 41.667 0.00 0.00 0.00 4.30
3296 11119 5.689383 TCTGAACTGCAATTTGTTACTCC 57.311 39.130 0.00 0.00 0.00 3.85
3298 11121 7.100458 AGTTTCTGAACTGCAATTTGTTACT 57.900 32.000 0.00 0.00 44.27 2.24
3320 11313 2.110011 ACTTGTCCCTTATTGGCCAAGT 59.890 45.455 24.94 14.17 44.44 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.