Multiple sequence alignment - TraesCS3B01G174700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G174700 chr3B 100.000 3685 0 0 1 3685 176320002 176323686 0.000000e+00 6806.0
1 TraesCS3B01G174700 chr3B 96.204 685 20 3 3002 3685 257209614 257208935 0.000000e+00 1116.0
2 TraesCS3B01G174700 chr2B 92.627 1519 88 9 1 1516 41375761 41377258 0.000000e+00 2163.0
3 TraesCS3B01G174700 chr2B 92.361 1152 79 4 1821 2971 41377257 41378400 0.000000e+00 1631.0
4 TraesCS3B01G174700 chr2B 89.744 507 31 8 3020 3517 757199536 757199042 2.420000e-176 628.0
5 TraesCS3B01G174700 chr2B 86.025 322 37 7 1512 1830 637570503 637570187 4.560000e-89 339.0
6 TraesCS3B01G174700 chr2B 88.415 164 18 1 1821 1984 198356014 198355852 2.900000e-46 196.0
7 TraesCS3B01G174700 chr2B 95.833 96 4 0 1421 1516 77965618 77965713 4.930000e-34 156.0
8 TraesCS3B01G174700 chr1D 89.532 1538 126 21 1 1516 71607910 71606386 0.000000e+00 1916.0
9 TraesCS3B01G174700 chr1D 90.487 862 78 3 1821 2679 71606387 71605527 0.000000e+00 1134.0
10 TraesCS3B01G174700 chr1D 79.739 612 104 13 2046 2655 462336248 462336841 3.400000e-115 425.0
11 TraesCS3B01G174700 chr1D 100.000 29 0 0 2377 2405 89866880 89866852 2.000000e-03 54.7
12 TraesCS3B01G174700 chr7A 89.218 1484 114 24 56 1516 47517013 47515553 0.000000e+00 1812.0
13 TraesCS3B01G174700 chr7A 92.568 444 33 0 2236 2679 47515365 47514922 4.010000e-179 638.0
14 TraesCS3B01G174700 chr7A 88.187 491 46 5 3028 3517 127989289 127988810 3.190000e-160 575.0
15 TraesCS3B01G174700 chr7A 91.053 190 17 0 1821 2010 47515554 47515365 1.310000e-64 257.0
16 TraesCS3B01G174700 chr7A 93.478 92 6 0 1425 1516 162455348 162455439 1.780000e-28 137.0
17 TraesCS3B01G174700 chr7A 94.643 56 2 1 1 55 47517088 47517033 6.560000e-13 86.1
18 TraesCS3B01G174700 chr2D 88.298 752 75 8 765 1516 607811585 607812323 0.000000e+00 889.0
19 TraesCS3B01G174700 chr2D 92.000 575 42 3 1821 2393 607812322 607812894 0.000000e+00 804.0
20 TraesCS3B01G174700 chr2D 92.197 487 36 2 3 487 607811077 607811563 0.000000e+00 688.0
21 TraesCS3B01G174700 chr2D 90.526 285 27 0 2378 2662 607812921 607813205 9.660000e-101 377.0
22 TraesCS3B01G174700 chr2D 88.757 169 19 0 1821 1989 616614150 616614318 1.340000e-49 207.0
23 TraesCS3B01G174700 chr2D 93.478 92 6 0 1425 1516 315858985 315859076 1.780000e-28 137.0
24 TraesCS3B01G174700 chr7D 87.106 667 76 5 1998 2662 45433000 45432342 0.000000e+00 747.0
25 TraesCS3B01G174700 chr7D 91.020 245 19 2 1192 1434 45433243 45433000 9.870000e-86 327.0
26 TraesCS3B01G174700 chr1A 79.739 612 104 13 2046 2655 554105108 554105701 3.400000e-115 425.0
27 TraesCS3B01G174700 chr1A 88.235 170 20 0 1826 1995 573508323 573508154 1.730000e-48 204.0
28 TraesCS3B01G174700 chr1A 92.308 91 7 0 1429 1519 258872528 258872438 2.990000e-26 130.0
29 TraesCS3B01G174700 chr5A 82.367 431 76 0 950 1380 666308790 666308360 3.470000e-100 375.0
30 TraesCS3B01G174700 chr4B 79.422 554 96 14 2051 2601 619364312 619363774 3.470000e-100 375.0
31 TraesCS3B01G174700 chr4B 86.875 320 33 8 1507 1822 92021772 92021458 2.110000e-92 350.0
32 TraesCS3B01G174700 chr4B 79.896 383 75 2 1000 1381 619364807 619364426 2.800000e-71 279.0
33 TraesCS3B01G174700 chr5D 88.217 314 29 7 1512 1821 520897111 520896802 5.810000e-98 368.0
34 TraesCS3B01G174700 chr5D 87.179 312 33 6 1514 1822 491336203 491335896 7.570000e-92 348.0
35 TraesCS3B01G174700 chr3D 87.261 314 30 8 1514 1823 429380548 429380241 2.110000e-92 350.0
36 TraesCS3B01G174700 chr3D 86.562 320 33 9 1515 1829 559081078 559080764 9.800000e-91 344.0
37 TraesCS3B01G174700 chr3D 100.000 28 0 0 2377 2404 451930911 451930884 7.000000e-03 52.8
38 TraesCS3B01G174700 chrUn 86.792 318 35 6 1508 1822 42685434 42685121 7.570000e-92 348.0
39 TraesCS3B01G174700 chrUn 86.792 318 35 6 1508 1822 451740509 451740822 7.570000e-92 348.0
40 TraesCS3B01G174700 chr7B 86.520 319 37 6 1511 1825 539984802 539984486 2.720000e-91 346.0
41 TraesCS3B01G174700 chr4D 80.000 430 84 2 949 1377 485538177 485538605 2.140000e-82 316.0
42 TraesCS3B01G174700 chr5B 90.728 151 14 0 1828 1978 166635391 166635241 6.240000e-48 202.0
43 TraesCS3B01G174700 chr5B 95.506 89 4 0 1428 1516 246936550 246936462 3.840000e-30 143.0
44 TraesCS3B01G174700 chr1B 88.889 162 17 1 1826 1986 442201729 442201890 8.070000e-47 198.0
45 TraesCS3B01G174700 chr1B 92.473 93 7 0 1424 1516 657346304 657346396 2.310000e-27 134.0
46 TraesCS3B01G174700 chr6B 94.624 93 4 1 1425 1516 701383393 701383485 3.840000e-30 143.0
47 TraesCS3B01G174700 chr3A 90.291 103 8 2 1414 1516 464801247 464801347 2.310000e-27 134.0
48 TraesCS3B01G174700 chr6A 100.000 28 0 0 2376 2403 16620674 16620647 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G174700 chr3B 176320002 176323686 3684 False 6806.000 6806 100.00000 1 3685 1 chr3B.!!$F1 3684
1 TraesCS3B01G174700 chr3B 257208935 257209614 679 True 1116.000 1116 96.20400 3002 3685 1 chr3B.!!$R1 683
2 TraesCS3B01G174700 chr2B 41375761 41378400 2639 False 1897.000 2163 92.49400 1 2971 2 chr2B.!!$F2 2970
3 TraesCS3B01G174700 chr1D 71605527 71607910 2383 True 1525.000 1916 90.00950 1 2679 2 chr1D.!!$R2 2678
4 TraesCS3B01G174700 chr1D 462336248 462336841 593 False 425.000 425 79.73900 2046 2655 1 chr1D.!!$F1 609
5 TraesCS3B01G174700 chr7A 47514922 47517088 2166 True 698.275 1812 91.87050 1 2679 4 chr7A.!!$R2 2678
6 TraesCS3B01G174700 chr2D 607811077 607813205 2128 False 689.500 889 90.75525 3 2662 4 chr2D.!!$F3 2659
7 TraesCS3B01G174700 chr7D 45432342 45433243 901 True 537.000 747 89.06300 1192 2662 2 chr7D.!!$R1 1470
8 TraesCS3B01G174700 chr1A 554105108 554105701 593 False 425.000 425 79.73900 2046 2655 1 chr1A.!!$F1 609
9 TraesCS3B01G174700 chr4B 619363774 619364807 1033 True 327.000 375 79.65900 1000 2601 2 chr4B.!!$R2 1601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 879 0.031616 AGAATCTCCGCCTCCTCCTT 60.032 55.0 0.0 0.0 0.0 3.36 F
1200 1244 0.034670 CAAAGCAGGGGAGGAAGGAG 60.035 60.0 0.0 0.0 0.0 3.69 F
1802 1861 0.250901 ATCTGAGTTTGCGGCCTTGT 60.251 50.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 2205 0.179137 CGCATCTAGCCTGACGTTGA 60.179 55.0 0.00 0.0 41.38 3.18 R
2484 2590 0.250467 ATCTCCCGGGCATCGAATTG 60.250 55.0 18.49 0.0 42.43 2.32 R
2835 2941 0.538287 AAGGTGAGCTGGGCTGTTTC 60.538 55.0 0.00 0.0 39.88 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.041372 GCTGACCTAGTAAGAAACATGAAACAA 60.041 37.037 0.00 0.00 0.00 2.83
103 125 7.060600 ACACAAACTGTACATCATATCGTTG 57.939 36.000 0.00 0.00 0.00 4.10
111 133 8.144478 ACTGTACATCATATCGTTGCTCTATTT 58.856 33.333 0.00 0.00 0.00 1.40
172 194 3.982516 AGTAGGTGTGGCTAGATCTCAA 58.017 45.455 0.00 0.00 0.00 3.02
176 198 2.101582 GGTGTGGCTAGATCTCAATCGT 59.898 50.000 0.00 0.00 36.97 3.73
177 199 3.430929 GGTGTGGCTAGATCTCAATCGTT 60.431 47.826 0.00 0.00 36.97 3.85
341 365 5.976534 GCAATTACACAGTTCATTGTCACAA 59.023 36.000 0.00 0.00 0.00 3.33
358 382 3.117794 CACAACGACTTCAACTACCGAA 58.882 45.455 0.00 0.00 0.00 4.30
437 461 0.878523 CCTGTCGTGGCGTTCAAGAA 60.879 55.000 0.00 0.00 35.75 2.52
510 534 1.264045 TGATGACCGATGGCTGGACA 61.264 55.000 0.00 0.00 35.71 4.02
554 578 3.224324 GATGCTCCCCGGCTACGA 61.224 66.667 0.00 0.00 44.60 3.43
576 600 4.214310 ACATGACCACCAACATCTTCAAA 58.786 39.130 0.00 0.00 0.00 2.69
583 607 2.154462 CCAACATCTTCAAAGGCTCGT 58.846 47.619 0.00 0.00 0.00 4.18
591 615 1.006102 CAAAGGCTCGTCGGAGTGT 60.006 57.895 0.00 0.00 42.53 3.55
672 696 3.056607 GCAACATGCTCAAAGTTGGGTAT 60.057 43.478 15.41 0.00 42.07 2.73
771 815 4.457949 TGTTAGTCGAGTCACTAATCAGCA 59.542 41.667 14.30 8.05 40.25 4.41
835 879 0.031616 AGAATCTCCGCCTCCTCCTT 60.032 55.000 0.00 0.00 0.00 3.36
846 890 0.905337 CTCCTCCTTCCAGAACCGGT 60.905 60.000 0.00 0.00 0.00 5.28
864 908 1.270041 GGTCTTCTGATCGGCATCTCC 60.270 57.143 0.00 0.00 0.00 3.71
865 909 1.410517 GTCTTCTGATCGGCATCTCCA 59.589 52.381 0.00 0.00 34.01 3.86
876 920 4.930696 TCGGCATCTCCATAGGTTCTATA 58.069 43.478 0.00 0.00 34.01 1.31
989 1033 1.625818 AGAGGTCGGCTTCTTTGATGT 59.374 47.619 0.00 0.00 0.00 3.06
1006 1050 4.788679 TGATGTCAATCAGAGCATGGAAT 58.211 39.130 0.00 0.00 37.91 3.01
1017 1061 5.011431 TCAGAGCATGGAATATGACTTCGAT 59.989 40.000 0.00 0.00 0.00 3.59
1027 1071 6.463897 GGAATATGACTTCGATAAAGGGACCA 60.464 42.308 0.00 0.00 39.47 4.02
1052 1096 1.852067 AAGCGGTTTTGCTACAGCGG 61.852 55.000 7.90 0.00 46.60 5.52
1115 1159 3.569200 GACAAGGGGGCTTCGGCTT 62.569 63.158 0.00 0.00 41.44 4.35
1179 1223 3.245052 CCATCAAAAGAGTCTCCAAGGGT 60.245 47.826 0.00 0.00 0.00 4.34
1182 1226 3.458118 TCAAAAGAGTCTCCAAGGGTTCA 59.542 43.478 0.00 0.00 0.00 3.18
1200 1244 0.034670 CAAAGCAGGGGAGGAAGGAG 60.035 60.000 0.00 0.00 0.00 3.69
1201 1245 0.476611 AAAGCAGGGGAGGAAGGAGT 60.477 55.000 0.00 0.00 0.00 3.85
1202 1246 0.417841 AAGCAGGGGAGGAAGGAGTA 59.582 55.000 0.00 0.00 0.00 2.59
1203 1247 0.644937 AGCAGGGGAGGAAGGAGTAT 59.355 55.000 0.00 0.00 0.00 2.12
1204 1248 0.761802 GCAGGGGAGGAAGGAGTATG 59.238 60.000 0.00 0.00 0.00 2.39
1205 1249 0.761802 CAGGGGAGGAAGGAGTATGC 59.238 60.000 0.00 0.00 0.00 3.14
1206 1250 0.400670 AGGGGAGGAAGGAGTATGCC 60.401 60.000 0.00 0.00 0.00 4.40
1207 1251 0.400670 GGGGAGGAAGGAGTATGCCT 60.401 60.000 0.00 0.00 40.93 4.75
1208 1252 1.052617 GGGAGGAAGGAGTATGCCTC 58.947 60.000 0.00 0.00 44.84 4.70
1209 1253 1.413808 GGGAGGAAGGAGTATGCCTCT 60.414 57.143 0.00 0.00 44.91 3.69
1323 1377 1.077716 GATGCCCAACGGTAGCCTT 60.078 57.895 0.00 0.00 0.00 4.35
1452 1511 7.486407 ACTCCCTCCGTTTTTATTTACTCTA 57.514 36.000 0.00 0.00 0.00 2.43
1497 1556 3.703286 ACTTCGTAAAGTTTGGCCAAC 57.297 42.857 20.35 13.66 43.28 3.77
1532 1591 7.947782 ACAATATACTCCCTCCATTTCCTTA 57.052 36.000 0.00 0.00 0.00 2.69
1533 1592 8.525729 ACAATATACTCCCTCCATTTCCTTAT 57.474 34.615 0.00 0.00 0.00 1.73
1534 1593 9.629649 ACAATATACTCCCTCCATTTCCTTATA 57.370 33.333 0.00 0.00 0.00 0.98
1535 1594 9.892130 CAATATACTCCCTCCATTTCCTTATAC 57.108 37.037 0.00 0.00 0.00 1.47
1536 1595 9.629649 AATATACTCCCTCCATTTCCTTATACA 57.370 33.333 0.00 0.00 0.00 2.29
1537 1596 7.947782 ATACTCCCTCCATTTCCTTATACAA 57.052 36.000 0.00 0.00 0.00 2.41
1538 1597 6.253946 ACTCCCTCCATTTCCTTATACAAG 57.746 41.667 0.00 0.00 0.00 3.16
1576 1635 9.533253 AAAATACAATTTGCATCTATACAAGGC 57.467 29.630 0.00 0.00 0.00 4.35
1577 1636 5.520376 ACAATTTGCATCTATACAAGGCC 57.480 39.130 0.00 0.00 0.00 5.19
1578 1637 4.955450 ACAATTTGCATCTATACAAGGCCA 59.045 37.500 5.01 0.00 0.00 5.36
1579 1638 5.163519 ACAATTTGCATCTATACAAGGCCAC 60.164 40.000 5.01 0.00 0.00 5.01
1580 1639 3.931907 TTGCATCTATACAAGGCCACT 57.068 42.857 5.01 0.00 0.00 4.00
1581 1640 5.366482 TTTGCATCTATACAAGGCCACTA 57.634 39.130 5.01 0.00 0.00 2.74
1582 1641 5.366482 TTGCATCTATACAAGGCCACTAA 57.634 39.130 5.01 0.00 0.00 2.24
1583 1642 4.703897 TGCATCTATACAAGGCCACTAAC 58.296 43.478 5.01 0.00 0.00 2.34
1584 1643 4.163268 TGCATCTATACAAGGCCACTAACA 59.837 41.667 5.01 0.00 0.00 2.41
1585 1644 4.752101 GCATCTATACAAGGCCACTAACAG 59.248 45.833 5.01 0.00 0.00 3.16
1586 1645 5.685075 GCATCTATACAAGGCCACTAACAGT 60.685 44.000 5.01 0.00 0.00 3.55
1587 1646 6.462487 GCATCTATACAAGGCCACTAACAGTA 60.462 42.308 5.01 0.00 0.00 2.74
1588 1647 7.497595 CATCTATACAAGGCCACTAACAGTAA 58.502 38.462 5.01 0.00 0.00 2.24
1589 1648 6.870769 TCTATACAAGGCCACTAACAGTAAC 58.129 40.000 5.01 0.00 0.00 2.50
1590 1649 3.136009 ACAAGGCCACTAACAGTAACC 57.864 47.619 5.01 0.00 0.00 2.85
1591 1650 2.073816 CAAGGCCACTAACAGTAACCG 58.926 52.381 5.01 0.00 30.17 4.44
1592 1651 1.636148 AGGCCACTAACAGTAACCGA 58.364 50.000 5.01 0.00 30.17 4.69
1593 1652 1.549170 AGGCCACTAACAGTAACCGAG 59.451 52.381 5.01 0.00 30.17 4.63
1594 1653 1.547372 GGCCACTAACAGTAACCGAGA 59.453 52.381 0.00 0.00 0.00 4.04
1595 1654 2.603953 GCCACTAACAGTAACCGAGAC 58.396 52.381 0.00 0.00 0.00 3.36
1596 1655 2.029649 GCCACTAACAGTAACCGAGACA 60.030 50.000 0.00 0.00 0.00 3.41
1597 1656 3.553508 GCCACTAACAGTAACCGAGACAA 60.554 47.826 0.00 0.00 0.00 3.18
1598 1657 4.624015 CCACTAACAGTAACCGAGACAAA 58.376 43.478 0.00 0.00 0.00 2.83
1599 1658 5.051816 CCACTAACAGTAACCGAGACAAAA 58.948 41.667 0.00 0.00 0.00 2.44
1600 1659 5.524646 CCACTAACAGTAACCGAGACAAAAA 59.475 40.000 0.00 0.00 0.00 1.94
1601 1660 6.204108 CCACTAACAGTAACCGAGACAAAAAT 59.796 38.462 0.00 0.00 0.00 1.82
1602 1661 7.255001 CCACTAACAGTAACCGAGACAAAAATT 60.255 37.037 0.00 0.00 0.00 1.82
1603 1662 8.767085 CACTAACAGTAACCGAGACAAAAATTA 58.233 33.333 0.00 0.00 0.00 1.40
1604 1663 9.328845 ACTAACAGTAACCGAGACAAAAATTAA 57.671 29.630 0.00 0.00 0.00 1.40
1607 1666 8.385898 ACAGTAACCGAGACAAAAATTAATGA 57.614 30.769 0.00 0.00 0.00 2.57
1608 1667 9.010029 ACAGTAACCGAGACAAAAATTAATGAT 57.990 29.630 0.00 0.00 0.00 2.45
1609 1668 9.277565 CAGTAACCGAGACAAAAATTAATGATG 57.722 33.333 0.00 0.00 0.00 3.07
1610 1669 9.010029 AGTAACCGAGACAAAAATTAATGATGT 57.990 29.630 0.00 0.00 0.00 3.06
1611 1670 9.620660 GTAACCGAGACAAAAATTAATGATGTT 57.379 29.630 0.00 0.00 0.00 2.71
1613 1672 9.541143 AACCGAGACAAAAATTAATGATGTTTT 57.459 25.926 0.00 0.00 0.00 2.43
1614 1673 9.191995 ACCGAGACAAAAATTAATGATGTTTTC 57.808 29.630 0.00 0.00 0.00 2.29
1615 1674 9.410556 CCGAGACAAAAATTAATGATGTTTTCT 57.589 29.630 0.00 0.00 0.00 2.52
1618 1677 9.965824 AGACAAAAATTAATGATGTTTTCTCGT 57.034 25.926 0.00 0.00 0.00 4.18
1624 1683 9.722056 AAATTAATGATGTTTTCTCGTATGAGC 57.278 29.630 7.11 0.00 42.26 4.26
1625 1684 7.841915 TTAATGATGTTTTCTCGTATGAGCA 57.158 32.000 7.11 0.00 42.26 4.26
1626 1685 6.741992 AATGATGTTTTCTCGTATGAGCAA 57.258 33.333 7.11 0.00 42.26 3.91
1627 1686 5.530519 TGATGTTTTCTCGTATGAGCAAC 57.469 39.130 7.11 12.13 42.26 4.17
1628 1687 5.237815 TGATGTTTTCTCGTATGAGCAACT 58.762 37.500 19.57 10.68 42.26 3.16
1629 1688 5.700832 TGATGTTTTCTCGTATGAGCAACTT 59.299 36.000 19.57 15.72 42.26 2.66
1630 1689 5.591643 TGTTTTCTCGTATGAGCAACTTC 57.408 39.130 19.57 7.13 42.26 3.01
1631 1690 4.451096 TGTTTTCTCGTATGAGCAACTTCC 59.549 41.667 19.57 3.51 42.26 3.46
1632 1691 4.537135 TTTCTCGTATGAGCAACTTCCT 57.463 40.909 7.11 0.00 42.26 3.36
1633 1692 4.537135 TTCTCGTATGAGCAACTTCCTT 57.463 40.909 7.11 0.00 42.26 3.36
1634 1693 4.111375 TCTCGTATGAGCAACTTCCTTC 57.889 45.455 7.11 0.00 42.26 3.46
1635 1694 3.764434 TCTCGTATGAGCAACTTCCTTCT 59.236 43.478 7.11 0.00 42.26 2.85
1636 1695 4.109050 CTCGTATGAGCAACTTCCTTCTC 58.891 47.826 0.00 0.00 34.96 2.87
1637 1696 3.509967 TCGTATGAGCAACTTCCTTCTCA 59.490 43.478 0.00 0.00 39.54 3.27
1638 1697 4.160439 TCGTATGAGCAACTTCCTTCTCAT 59.840 41.667 8.39 8.39 45.21 2.90
1639 1698 4.872691 CGTATGAGCAACTTCCTTCTCATT 59.127 41.667 8.60 0.00 41.87 2.57
1640 1699 5.352569 CGTATGAGCAACTTCCTTCTCATTT 59.647 40.000 8.60 0.00 41.87 2.32
1641 1700 5.640189 ATGAGCAACTTCCTTCTCATTTG 57.360 39.130 0.00 0.00 41.87 2.32
1642 1701 3.254166 TGAGCAACTTCCTTCTCATTTGC 59.746 43.478 0.00 0.00 39.69 3.68
1643 1702 3.225104 AGCAACTTCCTTCTCATTTGCA 58.775 40.909 6.86 0.00 41.43 4.08
1644 1703 3.830755 AGCAACTTCCTTCTCATTTGCAT 59.169 39.130 6.86 0.00 41.43 3.96
1645 1704 3.924686 GCAACTTCCTTCTCATTTGCATG 59.075 43.478 0.00 0.00 39.30 4.06
1646 1705 3.863142 ACTTCCTTCTCATTTGCATGC 57.137 42.857 11.82 11.82 0.00 4.06
1647 1706 3.159472 ACTTCCTTCTCATTTGCATGCA 58.841 40.909 18.46 18.46 0.00 3.96
1648 1707 3.767673 ACTTCCTTCTCATTTGCATGCAT 59.232 39.130 23.37 4.18 0.00 3.96
1649 1708 3.793797 TCCTTCTCATTTGCATGCATG 57.206 42.857 23.37 22.70 0.00 4.06
1664 1723 4.840911 CATGCATGCAGTCATAGTTACAC 58.159 43.478 26.69 0.00 0.00 2.90
1665 1724 4.206477 TGCATGCAGTCATAGTTACACT 57.794 40.909 18.46 0.00 0.00 3.55
1666 1725 3.934579 TGCATGCAGTCATAGTTACACTG 59.065 43.478 18.46 0.00 40.53 3.66
1667 1726 3.935203 GCATGCAGTCATAGTTACACTGT 59.065 43.478 14.21 0.00 39.86 3.55
1668 1727 4.201753 GCATGCAGTCATAGTTACACTGTG 60.202 45.833 14.21 6.19 39.86 3.66
1669 1728 3.925379 TGCAGTCATAGTTACACTGTGG 58.075 45.455 13.09 0.00 37.83 4.17
1670 1729 3.323691 TGCAGTCATAGTTACACTGTGGT 59.676 43.478 13.09 0.64 37.83 4.16
1671 1730 4.525100 TGCAGTCATAGTTACACTGTGGTA 59.475 41.667 13.09 0.00 37.83 3.25
1672 1731 4.863131 GCAGTCATAGTTACACTGTGGTAC 59.137 45.833 13.09 9.31 37.83 3.34
1673 1732 5.336531 GCAGTCATAGTTACACTGTGGTACT 60.337 44.000 13.09 15.63 37.83 2.73
1674 1733 6.688578 CAGTCATAGTTACACTGTGGTACTT 58.311 40.000 18.00 7.48 37.83 2.24
1675 1734 6.807230 CAGTCATAGTTACACTGTGGTACTTC 59.193 42.308 18.00 9.64 37.83 3.01
1676 1735 6.071503 AGTCATAGTTACACTGTGGTACTTCC 60.072 42.308 18.00 7.74 37.83 3.46
1677 1736 6.014647 TCATAGTTACACTGTGGTACTTCCT 58.985 40.000 18.00 5.43 37.83 3.36
1678 1737 6.495872 TCATAGTTACACTGTGGTACTTCCTT 59.504 38.462 18.00 2.06 37.83 3.36
1679 1738 5.211174 AGTTACACTGTGGTACTTCCTTC 57.789 43.478 13.09 0.00 37.07 3.46
1680 1739 4.900054 AGTTACACTGTGGTACTTCCTTCT 59.100 41.667 13.09 0.00 37.07 2.85
1681 1740 5.365895 AGTTACACTGTGGTACTTCCTTCTT 59.634 40.000 13.09 0.00 37.07 2.52
1682 1741 6.552350 AGTTACACTGTGGTACTTCCTTCTTA 59.448 38.462 13.09 0.00 37.07 2.10
1683 1742 7.234988 AGTTACACTGTGGTACTTCCTTCTTAT 59.765 37.037 13.09 0.00 37.07 1.73
1684 1743 6.435292 ACACTGTGGTACTTCCTTCTTATT 57.565 37.500 13.09 0.00 37.07 1.40
1685 1744 6.838382 ACACTGTGGTACTTCCTTCTTATTT 58.162 36.000 13.09 0.00 37.07 1.40
1686 1745 6.935208 ACACTGTGGTACTTCCTTCTTATTTC 59.065 38.462 13.09 0.00 37.07 2.17
1687 1746 7.162082 CACTGTGGTACTTCCTTCTTATTTCT 58.838 38.462 0.00 0.00 37.07 2.52
1688 1747 7.661847 CACTGTGGTACTTCCTTCTTATTTCTT 59.338 37.037 0.00 0.00 37.07 2.52
1689 1748 7.878644 ACTGTGGTACTTCCTTCTTATTTCTTC 59.121 37.037 0.00 0.00 37.07 2.87
1690 1749 7.166167 TGTGGTACTTCCTTCTTATTTCTTCC 58.834 38.462 0.00 0.00 37.07 3.46
1691 1750 7.017254 TGTGGTACTTCCTTCTTATTTCTTCCT 59.983 37.037 0.00 0.00 37.07 3.36
1692 1751 7.883833 GTGGTACTTCCTTCTTATTTCTTCCTT 59.116 37.037 0.00 0.00 37.07 3.36
1693 1752 7.883311 TGGTACTTCCTTCTTATTTCTTCCTTG 59.117 37.037 0.00 0.00 37.07 3.61
1694 1753 6.825944 ACTTCCTTCTTATTTCTTCCTTGC 57.174 37.500 0.00 0.00 0.00 4.01
1695 1754 6.306987 ACTTCCTTCTTATTTCTTCCTTGCA 58.693 36.000 0.00 0.00 0.00 4.08
1696 1755 6.950619 ACTTCCTTCTTATTTCTTCCTTGCAT 59.049 34.615 0.00 0.00 0.00 3.96
1697 1756 6.764308 TCCTTCTTATTTCTTCCTTGCATG 57.236 37.500 0.00 0.00 0.00 4.06
1698 1757 6.248433 TCCTTCTTATTTCTTCCTTGCATGT 58.752 36.000 0.00 0.00 0.00 3.21
1699 1758 7.402054 TCCTTCTTATTTCTTCCTTGCATGTA 58.598 34.615 0.00 0.00 0.00 2.29
1700 1759 8.055181 TCCTTCTTATTTCTTCCTTGCATGTAT 58.945 33.333 0.00 0.00 0.00 2.29
1701 1760 8.133627 CCTTCTTATTTCTTCCTTGCATGTATG 58.866 37.037 0.00 0.00 0.00 2.39
1710 1769 3.398920 GCATGTATGCGAGCGTGT 58.601 55.556 0.53 0.00 44.67 4.49
1711 1770 1.715585 GCATGTATGCGAGCGTGTT 59.284 52.632 0.53 0.00 44.67 3.32
1712 1771 0.927537 GCATGTATGCGAGCGTGTTA 59.072 50.000 0.53 0.00 44.67 2.41
1713 1772 1.326245 GCATGTATGCGAGCGTGTTAA 59.674 47.619 0.53 0.00 44.67 2.01
1714 1773 2.032894 GCATGTATGCGAGCGTGTTAAT 60.033 45.455 0.53 0.00 44.67 1.40
1715 1774 3.534889 CATGTATGCGAGCGTGTTAATG 58.465 45.455 0.00 0.00 0.00 1.90
1716 1775 2.882324 TGTATGCGAGCGTGTTAATGA 58.118 42.857 0.00 0.00 0.00 2.57
1717 1776 3.453424 TGTATGCGAGCGTGTTAATGAT 58.547 40.909 0.00 0.00 0.00 2.45
1718 1777 3.868661 TGTATGCGAGCGTGTTAATGATT 59.131 39.130 0.00 0.00 0.00 2.57
1719 1778 3.592381 ATGCGAGCGTGTTAATGATTC 57.408 42.857 0.00 0.00 0.00 2.52
1720 1779 2.616960 TGCGAGCGTGTTAATGATTCT 58.383 42.857 0.00 0.00 0.00 2.40
1721 1780 3.776340 TGCGAGCGTGTTAATGATTCTA 58.224 40.909 0.00 0.00 0.00 2.10
1722 1781 3.796717 TGCGAGCGTGTTAATGATTCTAG 59.203 43.478 0.00 0.00 0.00 2.43
1723 1782 3.797256 GCGAGCGTGTTAATGATTCTAGT 59.203 43.478 0.00 0.00 0.00 2.57
1724 1783 4.267928 GCGAGCGTGTTAATGATTCTAGTT 59.732 41.667 0.00 0.00 0.00 2.24
1725 1784 5.457799 GCGAGCGTGTTAATGATTCTAGTTA 59.542 40.000 0.00 0.00 0.00 2.24
1726 1785 6.144080 GCGAGCGTGTTAATGATTCTAGTTAT 59.856 38.462 0.00 0.00 0.00 1.89
1727 1786 7.617528 GCGAGCGTGTTAATGATTCTAGTTATC 60.618 40.741 0.00 0.00 0.00 1.75
1728 1787 7.378728 CGAGCGTGTTAATGATTCTAGTTATCA 59.621 37.037 11.05 11.05 36.53 2.15
1729 1788 8.942338 AGCGTGTTAATGATTCTAGTTATCAA 57.058 30.769 12.18 0.00 35.77 2.57
1730 1789 9.378551 AGCGTGTTAATGATTCTAGTTATCAAA 57.621 29.630 12.18 3.76 35.77 2.69
1731 1790 9.982291 GCGTGTTAATGATTCTAGTTATCAAAA 57.018 29.630 12.18 8.47 35.77 2.44
1747 1806 9.087424 AGTTATCAAAAAGAAAAGTTGACTTGC 57.913 29.630 0.00 0.00 36.12 4.01
1748 1807 8.868916 GTTATCAAAAAGAAAAGTTGACTTGCA 58.131 29.630 0.00 0.00 36.12 4.08
1749 1808 7.903995 ATCAAAAAGAAAAGTTGACTTGCAA 57.096 28.000 0.00 0.00 36.12 4.08
1750 1809 7.721286 TCAAAAAGAAAAGTTGACTTGCAAA 57.279 28.000 0.00 0.00 38.44 3.68
1789 1848 8.842358 TTTTACCTTGGTACTTGTAATCTGAG 57.158 34.615 0.00 0.00 0.00 3.35
1790 1849 7.549147 TTACCTTGGTACTTGTAATCTGAGT 57.451 36.000 0.00 0.00 0.00 3.41
1791 1850 6.435292 ACCTTGGTACTTGTAATCTGAGTT 57.565 37.500 0.00 0.00 0.00 3.01
1792 1851 6.838382 ACCTTGGTACTTGTAATCTGAGTTT 58.162 36.000 0.00 0.00 0.00 2.66
1793 1852 6.710744 ACCTTGGTACTTGTAATCTGAGTTTG 59.289 38.462 0.00 0.00 0.00 2.93
1794 1853 6.348540 CCTTGGTACTTGTAATCTGAGTTTGC 60.349 42.308 0.00 0.00 0.00 3.68
1795 1854 4.688879 TGGTACTTGTAATCTGAGTTTGCG 59.311 41.667 0.00 0.00 0.00 4.85
1796 1855 4.092968 GGTACTTGTAATCTGAGTTTGCGG 59.907 45.833 0.00 0.00 0.00 5.69
1797 1856 2.484264 ACTTGTAATCTGAGTTTGCGGC 59.516 45.455 0.00 0.00 0.00 6.53
1798 1857 1.448985 TGTAATCTGAGTTTGCGGCC 58.551 50.000 0.00 0.00 0.00 6.13
1799 1858 1.003118 TGTAATCTGAGTTTGCGGCCT 59.997 47.619 0.00 0.00 0.00 5.19
1800 1859 2.084546 GTAATCTGAGTTTGCGGCCTT 58.915 47.619 0.00 0.00 0.00 4.35
1801 1860 0.883833 AATCTGAGTTTGCGGCCTTG 59.116 50.000 0.00 0.00 0.00 3.61
1802 1861 0.250901 ATCTGAGTTTGCGGCCTTGT 60.251 50.000 0.00 0.00 0.00 3.16
1803 1862 0.394938 TCTGAGTTTGCGGCCTTGTA 59.605 50.000 0.00 0.00 0.00 2.41
1804 1863 1.003118 TCTGAGTTTGCGGCCTTGTAT 59.997 47.619 0.00 0.00 0.00 2.29
1805 1864 2.235155 TCTGAGTTTGCGGCCTTGTATA 59.765 45.455 0.00 0.00 0.00 1.47
1806 1865 3.006940 CTGAGTTTGCGGCCTTGTATAA 58.993 45.455 0.00 0.00 0.00 0.98
1807 1866 3.006940 TGAGTTTGCGGCCTTGTATAAG 58.993 45.455 0.00 0.00 0.00 1.73
1980 2039 9.052759 CCAAAGCTAATACGTGGAGTAAATAAT 57.947 33.333 0.00 0.00 39.04 1.28
1991 2050 7.608761 ACGTGGAGTAAATAATAAAGAAGGCAA 59.391 33.333 0.00 0.00 0.00 4.52
2027 2086 4.477413 GCCCTGAGCAGATGATGG 57.523 61.111 0.00 0.00 42.97 3.51
2030 2089 1.684248 GCCCTGAGCAGATGATGGTTT 60.684 52.381 0.00 0.00 40.53 3.27
2085 2144 0.616395 TGTGCTCGGGTTAGGATCCA 60.616 55.000 15.82 0.00 0.00 3.41
2146 2205 2.091720 TGCATAGGGACATCAAGCCAAT 60.092 45.455 0.00 0.00 0.00 3.16
2155 2216 2.485426 ACATCAAGCCAATCAACGTCAG 59.515 45.455 0.00 0.00 0.00 3.51
2349 2410 1.519246 CTCCTTGAGATCGCCTGCA 59.481 57.895 0.00 0.00 0.00 4.41
2484 2590 3.591254 GACACACGGCTGGGAGGAC 62.591 68.421 0.00 0.00 0.00 3.85
2514 2620 2.982130 GGGAGATGGAGTGCGTGT 59.018 61.111 0.00 0.00 0.00 4.49
2579 2685 1.069823 CCGTCTATCAGGCATGCTCTT 59.930 52.381 18.92 0.46 0.00 2.85
2591 2697 2.159531 GCATGCTCTTAATGTGTTGCGA 60.160 45.455 11.37 0.00 0.00 5.10
2629 2735 2.507944 CCTCCCCTCAAGGATGCG 59.492 66.667 0.00 0.00 38.24 4.73
2672 2778 3.445450 CAGTCAGTGGTATAGACAGCTGT 59.555 47.826 21.88 21.88 34.80 4.40
2691 2797 6.482641 CAGCTGTAGATCTGAGTAAAATGCAT 59.517 38.462 5.25 0.00 32.26 3.96
2698 2804 3.932710 TCTGAGTAAAATGCATCGGTGAC 59.067 43.478 0.00 0.00 0.00 3.67
2711 2817 2.925724 TCGGTGACCATTGAACTTGTT 58.074 42.857 1.11 0.00 0.00 2.83
2719 2825 4.193090 ACCATTGAACTTGTTGTGTACGA 58.807 39.130 0.00 0.00 0.00 3.43
2723 2829 5.398176 TTGAACTTGTTGTGTACGATCAC 57.602 39.130 0.00 0.00 38.63 3.06
2728 2834 5.113383 ACTTGTTGTGTACGATCACTTTGA 58.887 37.500 13.49 0.00 38.90 2.69
2789 2895 0.231279 GCGTTGCGGTGATTATACGG 59.769 55.000 0.00 0.00 0.00 4.02
2835 2941 3.543680 ATTCCATCTAGTTGACCGGTG 57.456 47.619 14.63 0.00 0.00 4.94
2867 2973 5.757320 CCAGCTCACCTTTTCTATGTCTATG 59.243 44.000 0.00 0.00 0.00 2.23
2888 2995 5.269554 TGGGGGTGAAAGAAAATGTAGAT 57.730 39.130 0.00 0.00 0.00 1.98
2895 3002 8.147704 GGGTGAAAGAAAATGTAGATGGAAAAA 58.852 33.333 0.00 0.00 0.00 1.94
2940 3047 2.428171 TCTAGTTAACCGGTGGGAATCG 59.572 50.000 8.52 0.00 36.97 3.34
2941 3048 1.269012 AGTTAACCGGTGGGAATCGA 58.731 50.000 8.52 0.00 36.97 3.59
2977 3084 3.835779 GCTAATAGTCTAGCGGGCTAAC 58.164 50.000 1.61 3.95 35.60 2.34
2978 3085 3.670091 GCTAATAGTCTAGCGGGCTAACG 60.670 52.174 1.61 0.00 35.60 3.18
2979 3086 2.267174 ATAGTCTAGCGGGCTAACGA 57.733 50.000 1.61 1.29 35.60 3.85
2980 3087 1.590932 TAGTCTAGCGGGCTAACGAG 58.409 55.000 1.61 0.00 35.47 4.18
2981 3088 0.394080 AGTCTAGCGGGCTAACGAGT 60.394 55.000 1.61 0.00 35.47 4.18
2982 3089 0.455005 GTCTAGCGGGCTAACGAGTT 59.545 55.000 1.61 0.00 35.47 3.01
2983 3090 1.672881 GTCTAGCGGGCTAACGAGTTA 59.327 52.381 1.61 0.00 35.47 2.24
2984 3091 2.292845 GTCTAGCGGGCTAACGAGTTAT 59.707 50.000 1.61 0.00 35.47 1.89
2985 3092 2.292569 TCTAGCGGGCTAACGAGTTATG 59.707 50.000 1.61 0.00 35.47 1.90
2986 3093 0.529992 AGCGGGCTAACGAGTTATGC 60.530 55.000 0.00 3.29 35.47 3.14
2987 3094 1.496403 GCGGGCTAACGAGTTATGCC 61.496 60.000 19.09 19.09 37.98 4.40
2988 3095 0.104304 CGGGCTAACGAGTTATGCCT 59.896 55.000 22.86 0.00 38.37 4.75
2989 3096 1.583054 GGGCTAACGAGTTATGCCTG 58.417 55.000 22.86 5.94 38.37 4.85
2990 3097 1.134491 GGGCTAACGAGTTATGCCTGT 60.134 52.381 22.86 0.00 38.37 4.00
2991 3098 2.202566 GGCTAACGAGTTATGCCTGTC 58.797 52.381 19.58 0.78 36.89 3.51
2992 3099 2.159085 GGCTAACGAGTTATGCCTGTCT 60.159 50.000 19.58 0.00 36.89 3.41
2993 3100 2.860735 GCTAACGAGTTATGCCTGTCTG 59.139 50.000 0.00 0.00 0.00 3.51
2994 3101 3.428999 GCTAACGAGTTATGCCTGTCTGA 60.429 47.826 0.00 0.00 0.00 3.27
2995 3102 2.949451 ACGAGTTATGCCTGTCTGAG 57.051 50.000 0.00 0.00 0.00 3.35
2996 3103 1.478510 ACGAGTTATGCCTGTCTGAGG 59.521 52.381 0.00 0.00 46.13 3.86
2997 3104 1.478510 CGAGTTATGCCTGTCTGAGGT 59.521 52.381 0.00 0.00 44.97 3.85
2998 3105 2.093973 CGAGTTATGCCTGTCTGAGGTT 60.094 50.000 0.00 0.00 44.97 3.50
2999 3106 3.617531 CGAGTTATGCCTGTCTGAGGTTT 60.618 47.826 0.00 0.00 44.97 3.27
3000 3107 4.327680 GAGTTATGCCTGTCTGAGGTTTT 58.672 43.478 0.00 0.00 44.97 2.43
3001 3108 4.074970 AGTTATGCCTGTCTGAGGTTTTG 58.925 43.478 0.00 0.00 44.97 2.44
3002 3109 2.664402 ATGCCTGTCTGAGGTTTTGT 57.336 45.000 0.00 0.00 44.97 2.83
3003 3110 1.967319 TGCCTGTCTGAGGTTTTGTC 58.033 50.000 0.00 0.00 44.97 3.18
3004 3111 1.490490 TGCCTGTCTGAGGTTTTGTCT 59.510 47.619 0.00 0.00 44.97 3.41
3005 3112 2.703536 TGCCTGTCTGAGGTTTTGTCTA 59.296 45.455 0.00 0.00 44.97 2.59
3006 3113 3.135712 TGCCTGTCTGAGGTTTTGTCTAA 59.864 43.478 0.00 0.00 44.97 2.10
3024 3131 1.356527 AAACTAGCTTTACCCGCGCG 61.357 55.000 25.67 25.67 0.00 6.86
3079 3186 9.965824 ATGTTAATAAGTGGTTTCTTTCTTGTG 57.034 29.630 0.00 0.00 0.00 3.33
3301 3408 7.840342 AAATTCAACAACACTAAATTGCACA 57.160 28.000 0.00 0.00 0.00 4.57
3351 3458 8.713708 TTGAACTAAATGTGGGAAAAGGAATA 57.286 30.769 0.00 0.00 0.00 1.75
3352 3459 8.713708 TGAACTAAATGTGGGAAAAGGAATAA 57.286 30.769 0.00 0.00 0.00 1.40
3353 3460 8.802267 TGAACTAAATGTGGGAAAAGGAATAAG 58.198 33.333 0.00 0.00 0.00 1.73
3354 3461 8.950007 AACTAAATGTGGGAAAAGGAATAAGA 57.050 30.769 0.00 0.00 0.00 2.10
3381 3488 8.173321 AGTATTTCAATAGCAAACGCAAATTC 57.827 30.769 0.00 0.00 0.00 2.17
3401 3508 0.179150 TTCTGTGTGTGTTTTGGCGC 60.179 50.000 0.00 0.00 0.00 6.53
3434 3541 1.410737 CGTAGACGATGTTGGTGGCG 61.411 60.000 0.00 0.00 43.02 5.69
3439 3546 1.739929 CGATGTTGGTGGCGCTACA 60.740 57.895 25.79 13.20 0.00 2.74
3450 3557 0.308993 GGCGCTACATGGATCAAAGC 59.691 55.000 7.64 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.724893 ATATAATAAAGCGGGGCAAAAGTT 57.275 33.333 0.00 0.00 0.00 2.66
111 133 7.223584 TCACACTAGATTCATGTCCAAGAAAA 58.776 34.615 0.00 0.00 0.00 2.29
115 137 5.728471 ACTCACACTAGATTCATGTCCAAG 58.272 41.667 0.00 0.00 0.00 3.61
172 194 6.436843 AAGACTTGTTTTGTCTCAAACGAT 57.563 33.333 0.00 0.00 43.16 3.73
176 198 7.915293 TGACTAAGACTTGTTTTGTCTCAAA 57.085 32.000 0.00 0.00 43.16 2.69
177 199 7.606456 ACTTGACTAAGACTTGTTTTGTCTCAA 59.394 33.333 0.00 0.00 43.16 3.02
341 365 2.798847 GCTTTTCGGTAGTTGAAGTCGT 59.201 45.455 0.00 0.00 0.00 4.34
452 476 2.581354 GTGGCTGAGGCGTCATCT 59.419 61.111 9.94 0.00 39.81 2.90
510 534 1.425066 TCAACATCTTGGGCAGAAGGT 59.575 47.619 0.00 0.00 34.16 3.50
554 578 3.507162 TGAAGATGTTGGTGGTCATGT 57.493 42.857 0.00 0.00 0.00 3.21
576 600 3.374402 CCACACTCCGACGAGCCT 61.374 66.667 0.00 0.00 40.03 4.58
583 607 4.329545 GCCCTTGCCACACTCCGA 62.330 66.667 0.00 0.00 0.00 4.55
591 615 2.602676 GGTCAGGTAGCCCTTGCCA 61.603 63.158 0.00 0.00 39.89 4.92
672 696 1.669440 GCACCCGTAGTTCTCACCA 59.331 57.895 0.00 0.00 0.00 4.17
721 745 2.035576 GTGAACACTAACCTCCGTGAGT 59.964 50.000 0.00 0.00 33.48 3.41
771 815 3.881688 GACACTGGATTAGCATGCATCTT 59.118 43.478 21.98 0.61 28.97 2.40
823 867 1.990060 TTCTGGAAGGAGGAGGCGG 60.990 63.158 0.00 0.00 0.00 6.13
846 890 1.780503 TGGAGATGCCGATCAGAAGA 58.219 50.000 0.00 0.00 40.66 2.87
876 920 5.047188 GTGACGGAAATGACCAAAAACAAT 58.953 37.500 0.00 0.00 0.00 2.71
989 1033 6.183810 AGTCATATTCCATGCTCTGATTGA 57.816 37.500 0.00 0.00 0.00 2.57
1006 1050 4.202080 CGTGGTCCCTTTATCGAAGTCATA 60.202 45.833 0.00 0.00 33.29 2.15
1017 1061 1.377229 CTTGGGCGTGGTCCCTTTA 59.623 57.895 0.12 0.00 46.67 1.85
1063 1107 1.602377 GTCGGAAAAGTTGTCTGTGGG 59.398 52.381 1.70 0.00 0.00 4.61
1115 1159 4.506625 CCTTGAGGAATCCTTTGTACACCA 60.507 45.833 2.09 0.00 37.39 4.17
1179 1223 0.405585 CCTTCCTCCCCTGCTTTGAA 59.594 55.000 0.00 0.00 0.00 2.69
1182 1226 0.476611 ACTCCTTCCTCCCCTGCTTT 60.477 55.000 0.00 0.00 0.00 3.51
1200 1244 2.365941 GACCCTTACCTCAGAGGCATAC 59.634 54.545 17.31 0.00 39.63 2.39
1201 1245 2.023404 TGACCCTTACCTCAGAGGCATA 60.023 50.000 17.31 0.00 39.63 3.14
1202 1246 1.273838 TGACCCTTACCTCAGAGGCAT 60.274 52.381 17.31 0.00 39.63 4.40
1203 1247 0.116342 TGACCCTTACCTCAGAGGCA 59.884 55.000 17.31 0.00 39.63 4.75
1204 1248 1.501582 ATGACCCTTACCTCAGAGGC 58.498 55.000 17.31 0.00 39.63 4.70
1205 1249 3.070302 GCTTATGACCCTTACCTCAGAGG 59.930 52.174 15.72 15.72 42.49 3.69
1206 1250 3.070302 GGCTTATGACCCTTACCTCAGAG 59.930 52.174 0.00 0.00 0.00 3.35
1207 1251 3.039011 GGCTTATGACCCTTACCTCAGA 58.961 50.000 0.00 0.00 0.00 3.27
1208 1252 2.224066 CGGCTTATGACCCTTACCTCAG 60.224 54.545 0.00 0.00 0.00 3.35
1209 1253 1.760613 CGGCTTATGACCCTTACCTCA 59.239 52.381 0.00 0.00 0.00 3.86
1323 1377 4.154942 TGGCAGCATAGAGATGTCTATCA 58.845 43.478 9.37 2.32 43.13 2.15
1550 1609 9.533253 GCCTTGTATAGATGCAAATTGTATTTT 57.467 29.630 0.00 0.00 32.12 1.82
1551 1610 8.143835 GGCCTTGTATAGATGCAAATTGTATTT 58.856 33.333 0.00 0.00 32.12 1.40
1552 1611 7.287466 TGGCCTTGTATAGATGCAAATTGTATT 59.713 33.333 3.32 0.00 32.12 1.89
1553 1612 6.777091 TGGCCTTGTATAGATGCAAATTGTAT 59.223 34.615 3.32 0.00 32.12 2.29
1554 1613 6.039270 GTGGCCTTGTATAGATGCAAATTGTA 59.961 38.462 3.32 0.00 32.12 2.41
1555 1614 4.955450 TGGCCTTGTATAGATGCAAATTGT 59.045 37.500 3.32 0.00 32.12 2.71
1556 1615 5.068198 AGTGGCCTTGTATAGATGCAAATTG 59.932 40.000 3.32 0.00 32.12 2.32
1557 1616 5.203528 AGTGGCCTTGTATAGATGCAAATT 58.796 37.500 3.32 0.00 32.12 1.82
1558 1617 4.796606 AGTGGCCTTGTATAGATGCAAAT 58.203 39.130 3.32 0.00 32.12 2.32
1559 1618 4.235079 AGTGGCCTTGTATAGATGCAAA 57.765 40.909 3.32 0.00 32.12 3.68
1560 1619 3.931907 AGTGGCCTTGTATAGATGCAA 57.068 42.857 3.32 0.00 0.00 4.08
1561 1620 4.163268 TGTTAGTGGCCTTGTATAGATGCA 59.837 41.667 3.32 0.00 0.00 3.96
1562 1621 4.703897 TGTTAGTGGCCTTGTATAGATGC 58.296 43.478 3.32 0.00 0.00 3.91
1563 1622 5.918608 ACTGTTAGTGGCCTTGTATAGATG 58.081 41.667 3.32 0.00 0.00 2.90
1564 1623 7.418712 GGTTACTGTTAGTGGCCTTGTATAGAT 60.419 40.741 3.32 0.00 0.00 1.98
1565 1624 6.127253 GGTTACTGTTAGTGGCCTTGTATAGA 60.127 42.308 3.32 0.00 0.00 1.98
1566 1625 6.047231 GGTTACTGTTAGTGGCCTTGTATAG 58.953 44.000 3.32 0.00 0.00 1.31
1567 1626 5.394443 CGGTTACTGTTAGTGGCCTTGTATA 60.394 44.000 3.32 0.00 0.00 1.47
1568 1627 4.622220 CGGTTACTGTTAGTGGCCTTGTAT 60.622 45.833 3.32 0.00 0.00 2.29
1569 1628 3.306225 CGGTTACTGTTAGTGGCCTTGTA 60.306 47.826 3.32 0.00 0.00 2.41
1570 1629 2.549349 CGGTTACTGTTAGTGGCCTTGT 60.549 50.000 3.32 0.00 0.00 3.16
1571 1630 2.073816 CGGTTACTGTTAGTGGCCTTG 58.926 52.381 3.32 0.00 0.00 3.61
1572 1631 1.972795 TCGGTTACTGTTAGTGGCCTT 59.027 47.619 3.32 0.00 0.00 4.35
1573 1632 1.549170 CTCGGTTACTGTTAGTGGCCT 59.451 52.381 3.32 0.00 0.00 5.19
1574 1633 1.547372 TCTCGGTTACTGTTAGTGGCC 59.453 52.381 0.00 0.00 0.00 5.36
1575 1634 2.029649 TGTCTCGGTTACTGTTAGTGGC 60.030 50.000 0.00 0.00 0.00 5.01
1576 1635 3.928727 TGTCTCGGTTACTGTTAGTGG 57.071 47.619 0.00 0.00 0.00 4.00
1577 1636 6.592798 TTTTTGTCTCGGTTACTGTTAGTG 57.407 37.500 0.00 0.00 0.00 2.74
1578 1637 7.797038 AATTTTTGTCTCGGTTACTGTTAGT 57.203 32.000 0.00 0.00 0.00 2.24
1581 1640 8.842280 TCATTAATTTTTGTCTCGGTTACTGTT 58.158 29.630 0.00 0.00 0.00 3.16
1582 1641 8.385898 TCATTAATTTTTGTCTCGGTTACTGT 57.614 30.769 0.00 0.00 0.00 3.55
1583 1642 9.277565 CATCATTAATTTTTGTCTCGGTTACTG 57.722 33.333 0.00 0.00 0.00 2.74
1584 1643 9.010029 ACATCATTAATTTTTGTCTCGGTTACT 57.990 29.630 0.00 0.00 0.00 2.24
1585 1644 9.620660 AACATCATTAATTTTTGTCTCGGTTAC 57.379 29.630 0.00 0.00 0.00 2.50
1587 1646 9.541143 AAAACATCATTAATTTTTGTCTCGGTT 57.459 25.926 0.00 0.00 0.00 4.44
1588 1647 9.191995 GAAAACATCATTAATTTTTGTCTCGGT 57.808 29.630 1.30 0.00 0.00 4.69
1589 1648 9.410556 AGAAAACATCATTAATTTTTGTCTCGG 57.589 29.630 1.30 0.00 0.00 4.63
1592 1651 9.965824 ACGAGAAAACATCATTAATTTTTGTCT 57.034 25.926 13.79 4.23 32.06 3.41
1598 1657 9.722056 GCTCATACGAGAAAACATCATTAATTT 57.278 29.630 0.00 0.00 42.34 1.82
1599 1658 8.892723 TGCTCATACGAGAAAACATCATTAATT 58.107 29.630 0.00 0.00 42.34 1.40
1600 1659 8.437360 TGCTCATACGAGAAAACATCATTAAT 57.563 30.769 0.00 0.00 42.34 1.40
1601 1660 7.841915 TGCTCATACGAGAAAACATCATTAA 57.158 32.000 0.00 0.00 42.34 1.40
1602 1661 7.549134 AGTTGCTCATACGAGAAAACATCATTA 59.451 33.333 7.33 0.00 38.60 1.90
1603 1662 6.372659 AGTTGCTCATACGAGAAAACATCATT 59.627 34.615 7.33 0.00 38.60 2.57
1604 1663 5.877012 AGTTGCTCATACGAGAAAACATCAT 59.123 36.000 7.33 0.00 38.60 2.45
1605 1664 5.237815 AGTTGCTCATACGAGAAAACATCA 58.762 37.500 7.33 0.00 38.60 3.07
1606 1665 5.786401 AGTTGCTCATACGAGAAAACATC 57.214 39.130 7.33 0.00 38.60 3.06
1607 1666 5.122396 GGAAGTTGCTCATACGAGAAAACAT 59.878 40.000 7.33 0.00 38.60 2.71
1608 1667 4.451096 GGAAGTTGCTCATACGAGAAAACA 59.549 41.667 7.33 0.00 38.60 2.83
1609 1668 4.691216 AGGAAGTTGCTCATACGAGAAAAC 59.309 41.667 0.00 0.00 38.60 2.43
1610 1669 4.894784 AGGAAGTTGCTCATACGAGAAAA 58.105 39.130 0.00 0.00 38.60 2.29
1611 1670 4.537135 AGGAAGTTGCTCATACGAGAAA 57.463 40.909 0.00 0.00 42.34 2.52
1612 1671 4.220821 AGAAGGAAGTTGCTCATACGAGAA 59.779 41.667 0.00 0.00 42.34 2.87
1613 1672 3.764434 AGAAGGAAGTTGCTCATACGAGA 59.236 43.478 0.00 0.00 42.34 4.04
1614 1673 4.109050 GAGAAGGAAGTTGCTCATACGAG 58.891 47.826 0.00 0.00 42.66 4.18
1615 1674 3.509967 TGAGAAGGAAGTTGCTCATACGA 59.490 43.478 0.00 0.00 32.85 3.43
1616 1675 3.849911 TGAGAAGGAAGTTGCTCATACG 58.150 45.455 0.00 0.00 32.85 3.06
1617 1676 6.549952 CAAATGAGAAGGAAGTTGCTCATAC 58.450 40.000 0.00 0.00 44.75 2.39
1618 1677 5.124457 GCAAATGAGAAGGAAGTTGCTCATA 59.876 40.000 0.00 0.00 44.75 2.15
1619 1678 4.082354 GCAAATGAGAAGGAAGTTGCTCAT 60.082 41.667 0.00 0.00 46.77 2.90
1620 1679 3.254166 GCAAATGAGAAGGAAGTTGCTCA 59.746 43.478 0.00 0.00 41.14 4.26
1621 1680 3.254166 TGCAAATGAGAAGGAAGTTGCTC 59.746 43.478 8.93 0.00 41.43 4.26
1622 1681 3.225104 TGCAAATGAGAAGGAAGTTGCT 58.775 40.909 8.93 0.00 41.43 3.91
1623 1682 3.648339 TGCAAATGAGAAGGAAGTTGC 57.352 42.857 1.26 1.26 41.28 4.17
1624 1683 3.924686 GCATGCAAATGAGAAGGAAGTTG 59.075 43.478 14.21 0.00 0.00 3.16
1625 1684 3.575256 TGCATGCAAATGAGAAGGAAGTT 59.425 39.130 20.30 0.00 0.00 2.66
1626 1685 3.159472 TGCATGCAAATGAGAAGGAAGT 58.841 40.909 20.30 0.00 0.00 3.01
1627 1686 3.861276 TGCATGCAAATGAGAAGGAAG 57.139 42.857 20.30 0.00 0.00 3.46
1628 1687 4.118093 CATGCATGCAAATGAGAAGGAA 57.882 40.909 26.68 0.00 0.00 3.36
1629 1688 3.793797 CATGCATGCAAATGAGAAGGA 57.206 42.857 26.68 0.00 0.00 3.36
1642 1701 4.840911 GTGTAACTATGACTGCATGCATG 58.159 43.478 22.97 22.70 35.94 4.06
1650 1709 8.053247 GGAAGTACCACAGTGTAACTATGACTG 61.053 44.444 0.00 0.00 46.45 3.51
1651 1710 6.071503 GGAAGTACCACAGTGTAACTATGACT 60.072 42.308 0.00 0.00 46.45 3.41
1652 1711 6.071503 AGGAAGTACCACAGTGTAACTATGAC 60.072 42.308 0.00 0.00 46.45 3.06
1653 1712 6.014647 AGGAAGTACCACAGTGTAACTATGA 58.985 40.000 0.00 0.00 46.45 2.15
1654 1713 6.282199 AGGAAGTACCACAGTGTAACTATG 57.718 41.667 0.00 0.00 42.17 2.23
1655 1714 6.724905 AGAAGGAAGTACCACAGTGTAACTAT 59.275 38.462 0.00 0.00 44.21 2.12
1656 1715 6.073314 AGAAGGAAGTACCACAGTGTAACTA 58.927 40.000 0.00 0.00 44.21 2.24
1657 1716 4.900054 AGAAGGAAGTACCACAGTGTAACT 59.100 41.667 0.00 0.00 46.26 2.24
1658 1717 5.211174 AGAAGGAAGTACCACAGTGTAAC 57.789 43.478 0.00 0.00 42.04 2.50
1659 1718 5.881923 AAGAAGGAAGTACCACAGTGTAA 57.118 39.130 0.00 0.00 42.04 2.41
1660 1719 7.549147 AATAAGAAGGAAGTACCACAGTGTA 57.451 36.000 0.00 0.00 42.04 2.90
1661 1720 6.435292 AATAAGAAGGAAGTACCACAGTGT 57.565 37.500 0.00 0.00 42.04 3.55
1662 1721 7.162082 AGAAATAAGAAGGAAGTACCACAGTG 58.838 38.462 0.00 0.00 42.04 3.66
1663 1722 7.317722 AGAAATAAGAAGGAAGTACCACAGT 57.682 36.000 0.00 0.00 42.04 3.55
1664 1723 7.334671 GGAAGAAATAAGAAGGAAGTACCACAG 59.665 40.741 0.00 0.00 42.04 3.66
1665 1724 7.017254 AGGAAGAAATAAGAAGGAAGTACCACA 59.983 37.037 0.00 0.00 42.04 4.17
1666 1725 7.395617 AGGAAGAAATAAGAAGGAAGTACCAC 58.604 38.462 0.00 0.00 42.04 4.16
1667 1726 7.569599 AGGAAGAAATAAGAAGGAAGTACCA 57.430 36.000 0.00 0.00 42.04 3.25
1668 1727 7.148222 GCAAGGAAGAAATAAGAAGGAAGTACC 60.148 40.741 0.00 0.00 39.35 3.34
1669 1728 7.390718 TGCAAGGAAGAAATAAGAAGGAAGTAC 59.609 37.037 0.00 0.00 0.00 2.73
1670 1729 7.458397 TGCAAGGAAGAAATAAGAAGGAAGTA 58.542 34.615 0.00 0.00 0.00 2.24
1671 1730 6.306987 TGCAAGGAAGAAATAAGAAGGAAGT 58.693 36.000 0.00 0.00 0.00 3.01
1672 1731 6.824305 TGCAAGGAAGAAATAAGAAGGAAG 57.176 37.500 0.00 0.00 0.00 3.46
1673 1732 6.721208 ACATGCAAGGAAGAAATAAGAAGGAA 59.279 34.615 0.00 0.00 0.00 3.36
1674 1733 6.248433 ACATGCAAGGAAGAAATAAGAAGGA 58.752 36.000 0.00 0.00 0.00 3.36
1675 1734 6.521151 ACATGCAAGGAAGAAATAAGAAGG 57.479 37.500 0.00 0.00 0.00 3.46
1694 1753 3.245048 TCATTAACACGCTCGCATACATG 59.755 43.478 0.00 0.00 0.00 3.21
1695 1754 3.453424 TCATTAACACGCTCGCATACAT 58.547 40.909 0.00 0.00 0.00 2.29
1696 1755 2.882324 TCATTAACACGCTCGCATACA 58.118 42.857 0.00 0.00 0.00 2.29
1697 1756 4.209288 AGAATCATTAACACGCTCGCATAC 59.791 41.667 0.00 0.00 0.00 2.39
1698 1757 4.368315 AGAATCATTAACACGCTCGCATA 58.632 39.130 0.00 0.00 0.00 3.14
1699 1758 3.198068 AGAATCATTAACACGCTCGCAT 58.802 40.909 0.00 0.00 0.00 4.73
1700 1759 2.616960 AGAATCATTAACACGCTCGCA 58.383 42.857 0.00 0.00 0.00 5.10
1701 1760 3.797256 ACTAGAATCATTAACACGCTCGC 59.203 43.478 0.00 0.00 0.00 5.03
1702 1761 5.950965 AACTAGAATCATTAACACGCTCG 57.049 39.130 0.00 0.00 0.00 5.03
1703 1762 8.575565 TGATAACTAGAATCATTAACACGCTC 57.424 34.615 0.00 0.00 0.00 5.03
1704 1763 8.942338 TTGATAACTAGAATCATTAACACGCT 57.058 30.769 11.56 0.00 33.52 5.07
1705 1764 9.982291 TTTTGATAACTAGAATCATTAACACGC 57.018 29.630 11.56 0.00 33.52 5.34
1721 1780 9.087424 GCAAGTCAACTTTTCTTTTTGATAACT 57.913 29.630 0.00 0.00 33.11 2.24
1722 1781 8.868916 TGCAAGTCAACTTTTCTTTTTGATAAC 58.131 29.630 0.00 0.00 33.11 1.89
1723 1782 8.994429 TGCAAGTCAACTTTTCTTTTTGATAA 57.006 26.923 0.00 0.00 33.11 1.75
1724 1783 8.994429 TTGCAAGTCAACTTTTCTTTTTGATA 57.006 26.923 0.00 0.00 33.11 2.15
1725 1784 7.903995 TTGCAAGTCAACTTTTCTTTTTGAT 57.096 28.000 0.00 0.00 33.11 2.57
1726 1785 7.571059 GCTTTGCAAGTCAACTTTTCTTTTTGA 60.571 33.333 0.00 0.00 33.73 2.69
1727 1786 6.520790 GCTTTGCAAGTCAACTTTTCTTTTTG 59.479 34.615 0.00 0.00 33.73 2.44
1728 1787 6.204495 TGCTTTGCAAGTCAACTTTTCTTTTT 59.796 30.769 0.00 0.00 34.76 1.94
1729 1788 5.700373 TGCTTTGCAAGTCAACTTTTCTTTT 59.300 32.000 0.00 0.00 34.76 2.27
1730 1789 5.237048 TGCTTTGCAAGTCAACTTTTCTTT 58.763 33.333 0.00 0.00 34.76 2.52
1731 1790 4.819769 TGCTTTGCAAGTCAACTTTTCTT 58.180 34.783 0.00 0.00 34.76 2.52
1732 1791 4.082026 ACTGCTTTGCAAGTCAACTTTTCT 60.082 37.500 0.00 0.00 38.41 2.52
1733 1792 4.176271 ACTGCTTTGCAAGTCAACTTTTC 58.824 39.130 0.00 0.00 38.41 2.29
1734 1793 4.176271 GACTGCTTTGCAAGTCAACTTTT 58.824 39.130 10.70 0.00 38.41 2.27
1735 1794 3.193267 TGACTGCTTTGCAAGTCAACTTT 59.807 39.130 14.99 0.00 40.61 2.66
1736 1795 2.754552 TGACTGCTTTGCAAGTCAACTT 59.245 40.909 14.99 0.00 40.61 2.66
1737 1796 2.368439 TGACTGCTTTGCAAGTCAACT 58.632 42.857 14.99 0.00 40.61 3.16
1738 1797 2.849880 TGACTGCTTTGCAAGTCAAC 57.150 45.000 14.99 7.75 40.61 3.18
1739 1798 5.512753 TTAATGACTGCTTTGCAAGTCAA 57.487 34.783 19.83 5.09 43.64 3.18
1740 1799 5.710513 ATTAATGACTGCTTTGCAAGTCA 57.289 34.783 18.61 18.61 44.09 3.41
1741 1800 7.412137 AAAATTAATGACTGCTTTGCAAGTC 57.588 32.000 8.97 8.97 38.41 3.01
1742 1801 7.790823 AAAAATTAATGACTGCTTTGCAAGT 57.209 28.000 0.00 0.00 38.41 3.16
1763 1822 9.280174 CTCAGATTACAAGTACCAAGGTAAAAA 57.720 33.333 0.00 0.00 31.86 1.94
1764 1823 8.434392 ACTCAGATTACAAGTACCAAGGTAAAA 58.566 33.333 0.00 0.00 31.86 1.52
1765 1824 7.970102 ACTCAGATTACAAGTACCAAGGTAAA 58.030 34.615 0.00 0.00 31.86 2.01
1766 1825 7.549147 ACTCAGATTACAAGTACCAAGGTAA 57.451 36.000 0.00 0.00 31.86 2.85
1767 1826 7.549147 AACTCAGATTACAAGTACCAAGGTA 57.451 36.000 0.00 0.00 0.00 3.08
1768 1827 6.435292 AACTCAGATTACAAGTACCAAGGT 57.565 37.500 0.00 0.00 0.00 3.50
1769 1828 6.348540 GCAAACTCAGATTACAAGTACCAAGG 60.349 42.308 0.00 0.00 0.00 3.61
1770 1829 6.603095 GCAAACTCAGATTACAAGTACCAAG 58.397 40.000 0.00 0.00 0.00 3.61
1771 1830 5.178623 CGCAAACTCAGATTACAAGTACCAA 59.821 40.000 0.00 0.00 0.00 3.67
1772 1831 4.688879 CGCAAACTCAGATTACAAGTACCA 59.311 41.667 0.00 0.00 0.00 3.25
1773 1832 4.092968 CCGCAAACTCAGATTACAAGTACC 59.907 45.833 0.00 0.00 0.00 3.34
1774 1833 4.435651 GCCGCAAACTCAGATTACAAGTAC 60.436 45.833 0.00 0.00 0.00 2.73
1775 1834 3.682858 GCCGCAAACTCAGATTACAAGTA 59.317 43.478 0.00 0.00 0.00 2.24
1776 1835 2.484264 GCCGCAAACTCAGATTACAAGT 59.516 45.455 0.00 0.00 0.00 3.16
1777 1836 2.159517 GGCCGCAAACTCAGATTACAAG 60.160 50.000 0.00 0.00 0.00 3.16
1778 1837 1.810151 GGCCGCAAACTCAGATTACAA 59.190 47.619 0.00 0.00 0.00 2.41
1779 1838 1.003118 AGGCCGCAAACTCAGATTACA 59.997 47.619 0.00 0.00 0.00 2.41
1780 1839 1.739067 AGGCCGCAAACTCAGATTAC 58.261 50.000 0.00 0.00 0.00 1.89
1781 1840 2.083774 CAAGGCCGCAAACTCAGATTA 58.916 47.619 0.00 0.00 0.00 1.75
1782 1841 0.883833 CAAGGCCGCAAACTCAGATT 59.116 50.000 0.00 0.00 0.00 2.40
1783 1842 0.250901 ACAAGGCCGCAAACTCAGAT 60.251 50.000 0.00 0.00 0.00 2.90
1784 1843 0.394938 TACAAGGCCGCAAACTCAGA 59.605 50.000 0.00 0.00 0.00 3.27
1785 1844 1.453155 ATACAAGGCCGCAAACTCAG 58.547 50.000 0.00 0.00 0.00 3.35
1786 1845 2.772077 TATACAAGGCCGCAAACTCA 57.228 45.000 0.00 0.00 0.00 3.41
1787 1846 2.354821 CCTTATACAAGGCCGCAAACTC 59.645 50.000 0.00 0.00 44.90 3.01
1788 1847 2.365582 CCTTATACAAGGCCGCAAACT 58.634 47.619 0.00 0.00 44.90 2.66
1789 1848 2.844122 CCTTATACAAGGCCGCAAAC 57.156 50.000 0.00 0.00 44.90 2.93
1798 1857 9.799106 AATTACTCCATCCATTCCTTATACAAG 57.201 33.333 0.00 0.00 0.00 3.16
1805 1864 9.588096 GGTAAATAATTACTCCATCCATTCCTT 57.412 33.333 0.89 0.00 41.01 3.36
1806 1865 7.883311 CGGTAAATAATTACTCCATCCATTCCT 59.117 37.037 0.89 0.00 41.01 3.36
1807 1866 7.664318 ACGGTAAATAATTACTCCATCCATTCC 59.336 37.037 0.89 0.00 41.01 3.01
1808 1867 8.617290 ACGGTAAATAATTACTCCATCCATTC 57.383 34.615 0.89 0.00 41.01 2.67
2085 2144 2.952978 CCTGATGTAGGTAGAGAAGCGT 59.047 50.000 0.00 0.00 42.00 5.07
2146 2205 0.179137 CGCATCTAGCCTGACGTTGA 60.179 55.000 0.00 0.00 41.38 3.18
2155 2216 1.291132 GTTGAAGGACGCATCTAGCC 58.709 55.000 0.00 0.00 41.38 3.93
2205 2266 3.851845 CTCGGCCGTGTTCGACCAA 62.852 63.158 27.15 0.00 39.52 3.67
2245 2306 1.419762 CCATGTATCCCATTGTCCCGA 59.580 52.381 0.00 0.00 0.00 5.14
2249 2310 4.042062 TCTGGATCCATGTATCCCATTGTC 59.958 45.833 16.63 0.00 44.23 3.18
2302 2363 3.325870 CCGAAGCTGTAAACATCTGACA 58.674 45.455 0.00 0.00 0.00 3.58
2484 2590 0.250467 ATCTCCCGGGCATCGAATTG 60.250 55.000 18.49 0.00 42.43 2.32
2514 2620 0.958091 CACCAAAGCCCGACAATCAA 59.042 50.000 0.00 0.00 0.00 2.57
2579 2685 2.159585 CGCCTCAAATCGCAACACATTA 60.160 45.455 0.00 0.00 0.00 1.90
2629 2735 2.779033 GGCATGTAGCTTGCAGCCC 61.779 63.158 10.85 3.35 43.77 5.19
2662 2768 7.939784 TTTTACTCAGATCTACAGCTGTCTA 57.060 36.000 25.56 13.34 33.90 2.59
2666 2772 5.814188 TGCATTTTACTCAGATCTACAGCTG 59.186 40.000 13.48 13.48 0.00 4.24
2672 2778 5.985530 CACCGATGCATTTTACTCAGATCTA 59.014 40.000 0.00 0.00 0.00 1.98
2691 2797 2.616376 CAACAAGTTCAATGGTCACCGA 59.384 45.455 0.00 0.00 0.00 4.69
2698 2804 4.804608 TCGTACACAACAAGTTCAATGG 57.195 40.909 0.00 0.00 0.00 3.16
2758 2864 3.364920 CACCGCAACGCATATATAGTGAG 59.635 47.826 0.00 0.00 0.00 3.51
2760 2866 3.313690 TCACCGCAACGCATATATAGTG 58.686 45.455 0.00 0.00 0.00 2.74
2789 2895 0.802494 CCATACAAGCCAACGGTGAC 59.198 55.000 0.00 0.00 0.00 3.67
2797 2903 4.144297 GGAATATGAAGCCATACAAGCCA 58.856 43.478 0.00 0.00 38.02 4.75
2802 2908 7.559335 ACTAGATGGAATATGAAGCCATACA 57.441 36.000 0.00 0.00 42.22 2.29
2835 2941 0.538287 AAGGTGAGCTGGGCTGTTTC 60.538 55.000 0.00 0.00 39.88 2.78
2867 2973 4.402474 CCATCTACATTTTCTTTCACCCCC 59.598 45.833 0.00 0.00 0.00 5.40
2908 3015 5.360714 ACCGGTTAACTAGATGGAATACGAA 59.639 40.000 0.00 0.00 0.00 3.85
2911 3018 5.295152 CCACCGGTTAACTAGATGGAATAC 58.705 45.833 2.97 0.00 0.00 1.89
2919 3026 2.428171 CGATTCCCACCGGTTAACTAGA 59.572 50.000 2.97 0.00 0.00 2.43
2964 3071 2.042686 TAACTCGTTAGCCCGCTAGA 57.957 50.000 0.00 0.00 0.00 2.43
2971 3078 2.159085 AGACAGGCATAACTCGTTAGCC 60.159 50.000 16.00 16.00 38.48 3.93
2972 3079 2.860735 CAGACAGGCATAACTCGTTAGC 59.139 50.000 0.00 0.68 0.00 3.09
2973 3080 4.355437 CTCAGACAGGCATAACTCGTTAG 58.645 47.826 0.00 0.00 0.00 2.34
2974 3081 3.130516 CCTCAGACAGGCATAACTCGTTA 59.869 47.826 0.00 0.00 34.56 3.18
2975 3082 2.093973 CCTCAGACAGGCATAACTCGTT 60.094 50.000 0.00 0.00 34.56 3.85
2976 3083 1.478510 CCTCAGACAGGCATAACTCGT 59.521 52.381 0.00 0.00 34.56 4.18
2977 3084 2.215907 CCTCAGACAGGCATAACTCG 57.784 55.000 0.00 0.00 34.56 4.18
2996 3103 6.596703 CGGGTAAAGCTAGTTTAGACAAAAC 58.403 40.000 0.00 0.00 46.61 2.43
2997 3104 5.179929 GCGGGTAAAGCTAGTTTAGACAAAA 59.820 40.000 0.00 0.00 30.93 2.44
2998 3105 4.692155 GCGGGTAAAGCTAGTTTAGACAAA 59.308 41.667 0.00 0.00 30.93 2.83
2999 3106 4.248058 GCGGGTAAAGCTAGTTTAGACAA 58.752 43.478 0.00 0.00 30.93 3.18
3000 3107 3.674138 CGCGGGTAAAGCTAGTTTAGACA 60.674 47.826 0.00 0.00 30.93 3.41
3001 3108 2.856557 CGCGGGTAAAGCTAGTTTAGAC 59.143 50.000 0.00 0.00 30.93 2.59
3002 3109 2.736400 GCGCGGGTAAAGCTAGTTTAGA 60.736 50.000 8.83 0.00 30.93 2.10
3003 3110 1.591619 GCGCGGGTAAAGCTAGTTTAG 59.408 52.381 8.83 0.00 30.93 1.85
3004 3111 1.643880 GCGCGGGTAAAGCTAGTTTA 58.356 50.000 8.83 0.00 0.00 2.01
3005 3112 1.356527 CGCGCGGGTAAAGCTAGTTT 61.357 55.000 24.84 0.00 0.00 2.66
3006 3113 1.808390 CGCGCGGGTAAAGCTAGTT 60.808 57.895 24.84 0.00 0.00 2.24
3070 3177 9.683069 AAGTTCTATTTATTGCACACAAGAAAG 57.317 29.630 5.08 0.00 46.72 2.62
3079 3186 6.919721 TGGACCAAAGTTCTATTTATTGCAC 58.080 36.000 0.00 0.00 0.00 4.57
3129 3236 9.537848 GTACTTTTTGACAATACAACCTTATCG 57.462 33.333 0.00 0.00 0.00 2.92
3166 3273 1.408683 GCCTAAGATGCACCACATGGA 60.409 52.381 4.53 0.00 39.84 3.41
3229 3336 8.934023 AAAAGTGGAATGATGTAGGTTAGAAA 57.066 30.769 0.00 0.00 0.00 2.52
3234 3341 9.533831 AGAAATAAAAGTGGAATGATGTAGGTT 57.466 29.630 0.00 0.00 0.00 3.50
3269 3376 8.715191 TTTAGTGTTGTTGAATTTTCTTGCAT 57.285 26.923 0.00 0.00 0.00 3.96
3351 3458 7.367285 TGCGTTTGCTATTGAAATACTTTCTT 58.633 30.769 1.74 0.00 43.34 2.52
3352 3459 6.908825 TGCGTTTGCTATTGAAATACTTTCT 58.091 32.000 1.74 0.00 43.34 2.52
3353 3460 7.561237 TTGCGTTTGCTATTGAAATACTTTC 57.439 32.000 0.00 0.00 43.34 2.62
3354 3461 7.938563 TTTGCGTTTGCTATTGAAATACTTT 57.061 28.000 0.00 0.00 43.34 2.66
3381 3488 1.826327 CGCCAAAACACACACAGAAG 58.174 50.000 0.00 0.00 0.00 2.85
3434 3541 2.359848 TGCATGCTTTGATCCATGTAGC 59.640 45.455 20.33 0.00 40.63 3.58
3439 3546 5.542635 AGGAATAATGCATGCTTTGATCCAT 59.457 36.000 31.37 21.96 0.00 3.41
3450 3557 6.575267 TGTTGAATCCAAGGAATAATGCATG 58.425 36.000 0.00 0.00 32.06 4.06
3584 3691 7.877097 TGTGGTTGCTTGCTTTATTGAAATAAT 59.123 29.630 0.00 0.00 31.47 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.