Multiple sequence alignment - TraesCS3B01G174000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G174000 chr3B 100.000 4970 0 0 1414 6383 174247794 174252763 0.000000e+00 9178.0
1 TraesCS3B01G174000 chr3B 100.000 1097 0 0 1 1097 174246381 174247477 0.000000e+00 2026.0
2 TraesCS3B01G174000 chr3B 91.531 307 19 6 6082 6383 174354255 174354559 3.560000e-112 416.0
3 TraesCS3B01G174000 chr3B 95.604 182 7 1 1 181 439665632 439665451 2.250000e-74 291.0
4 TraesCS3B01G174000 chr3B 97.619 84 2 0 182 265 734648344 734648427 1.850000e-30 145.0
5 TraesCS3B01G174000 chr3B 93.976 83 5 0 3681 3763 174249974 174250056 6.720000e-25 126.0
6 TraesCS3B01G174000 chr3B 93.976 83 5 0 3594 3676 174250061 174250143 6.720000e-25 126.0
7 TraesCS3B01G174000 chr3D 96.462 2431 79 5 1414 3843 122590242 122592666 0.000000e+00 4006.0
8 TraesCS3B01G174000 chr3D 93.589 1903 63 24 3888 5783 122592654 122594504 0.000000e+00 2784.0
9 TraesCS3B01G174000 chr3D 85.137 693 67 22 1 671 122585240 122585918 0.000000e+00 676.0
10 TraesCS3B01G174000 chr3D 89.906 426 31 9 5968 6383 122595776 122596199 7.280000e-149 538.0
11 TraesCS3B01G174000 chr3D 96.094 256 10 0 842 1097 122589893 122590148 9.900000e-113 418.0
12 TraesCS3B01G174000 chr3D 94.624 186 8 2 5804 5989 122594573 122594756 2.910000e-73 287.0
13 TraesCS3B01G174000 chr3D 95.055 182 7 2 1 181 520868899 520868719 1.050000e-72 285.0
14 TraesCS3B01G174000 chr3D 91.329 173 10 2 666 838 122585868 122586035 1.380000e-56 231.0
15 TraesCS3B01G174000 chr3D 73.986 419 80 18 281 675 309671002 309671415 6.670000e-30 143.0
16 TraesCS3B01G174000 chr3D 93.103 87 6 0 3594 3680 122592504 122592590 1.870000e-25 128.0
17 TraesCS3B01G174000 chr3D 93.976 83 5 0 3681 3763 122592417 122592499 6.720000e-25 126.0
18 TraesCS3B01G174000 chr3D 94.000 50 3 0 4672 4721 122593496 122593545 6.860000e-10 76.8
19 TraesCS3B01G174000 chr3A 96.424 2433 71 9 1414 3843 128302805 128305224 0.000000e+00 3997.0
20 TraesCS3B01G174000 chr3A 93.625 1898 69 12 3932 5805 128307293 128309162 0.000000e+00 2787.0
21 TraesCS3B01G174000 chr3A 94.373 391 20 2 709 1097 128302034 128302424 3.290000e-167 599.0
22 TraesCS3B01G174000 chr3A 91.688 385 23 8 6005 6383 128309563 128309944 5.670000e-145 525.0
23 TraesCS3B01G174000 chr3A 94.898 196 9 1 5804 5999 128309246 128309440 8.040000e-79 305.0
24 TraesCS3B01G174000 chr3A 79.452 365 57 13 324 673 662021470 662021831 6.390000e-60 243.0
25 TraesCS3B01G174000 chr3A 87.166 187 15 4 182 368 128301615 128301792 3.020000e-48 204.0
26 TraesCS3B01G174000 chr3A 96.386 83 2 1 3681 3763 128304976 128305057 1.120000e-27 135.0
27 TraesCS3B01G174000 chr7A 93.201 1912 75 26 3888 5783 594698290 594700162 0.000000e+00 2760.0
28 TraesCS3B01G174000 chr7A 95.848 1108 28 5 2522 3628 594675823 594676913 0.000000e+00 1775.0
29 TraesCS3B01G174000 chr7A 96.034 1059 41 1 1468 2525 594667807 594668865 0.000000e+00 1722.0
30 TraesCS3B01G174000 chr7A 88.850 574 30 20 5819 6383 594701599 594702147 0.000000e+00 675.0
31 TraesCS3B01G174000 chr7A 84.410 449 30 20 666 1097 594667049 594667474 7.710000e-109 405.0
32 TraesCS3B01G174000 chr7A 96.491 228 8 0 3616 3843 594698075 594698302 1.680000e-100 377.0
33 TraesCS3B01G174000 chr7A 79.404 369 54 14 327 675 263171911 263171545 2.300000e-59 241.0
34 TraesCS3B01G174000 chr7A 93.443 61 4 0 3703 3763 594698075 594698135 2.450000e-14 91.6
35 TraesCS3B01G174000 chr7A 89.286 56 6 0 337 392 265926467 265926522 3.190000e-08 71.3
36 TraesCS3B01G174000 chr7A 100.000 30 0 0 3681 3710 594676879 594676908 8.940000e-04 56.5
37 TraesCS3B01G174000 chr6D 86.957 253 30 3 431 681 414434255 414434004 1.350000e-71 281.0
38 TraesCS3B01G174000 chr6D 94.475 181 10 0 1 181 71606339 71606519 4.870000e-71 279.0
39 TraesCS3B01G174000 chr6D 78.919 370 54 15 327 675 56208412 56208046 4.980000e-56 230.0
40 TraesCS3B01G174000 chr5D 94.505 182 9 1 1 181 354489122 354489303 4.870000e-71 279.0
41 TraesCS3B01G174000 chr5D 94.505 182 8 2 1 181 362798032 362798212 4.870000e-71 279.0
42 TraesCS3B01G174000 chr5D 97.802 91 2 0 182 272 369701086 369700996 2.380000e-34 158.0
43 TraesCS3B01G174000 chr5D 97.619 84 2 0 183 266 488175539 488175622 1.850000e-30 145.0
44 TraesCS3B01G174000 chr4B 94.505 182 8 2 1 181 448507946 448507766 4.870000e-71 279.0
45 TraesCS3B01G174000 chr4B 96.552 58 0 2 3836 3892 20290839 20290895 1.890000e-15 95.3
46 TraesCS3B01G174000 chr2D 94.505 182 8 2 1 181 58849037 58849217 4.870000e-71 279.0
47 TraesCS3B01G174000 chr2D 80.403 347 52 10 339 673 567805866 567805524 3.820000e-62 250.0
48 TraesCS3B01G174000 chr2D 95.506 89 4 0 182 270 54887809 54887721 6.670000e-30 143.0
49 TraesCS3B01G174000 chr6B 93.158 190 11 2 1 189 197755131 197755319 1.750000e-70 278.0
50 TraesCS3B01G174000 chr6B 98.182 55 1 0 3838 3892 525552989 525553043 5.270000e-16 97.1
51 TraesCS3B01G174000 chr5B 80.556 360 57 10 327 675 545789833 545789476 1.360000e-66 265.0
52 TraesCS3B01G174000 chr5B 79.932 294 50 5 281 566 440198345 440198637 2.330000e-49 207.0
53 TraesCS3B01G174000 chr1D 80.000 365 51 9 332 675 459832845 459833208 3.820000e-62 250.0
54 TraesCS3B01G174000 chr7B 77.437 359 66 11 327 675 552125001 552124648 3.900000e-47 200.0
55 TraesCS3B01G174000 chr7B 88.525 61 7 0 332 392 225389903 225389963 2.470000e-09 75.0
56 TraesCS3B01G174000 chr4A 98.837 86 1 0 182 267 669440166 669440251 3.080000e-33 154.0
57 TraesCS3B01G174000 chr7D 96.629 89 3 0 182 270 121933936 121933848 1.430000e-31 148.0
58 TraesCS3B01G174000 chr4D 96.471 85 3 0 182 266 497530564 497530480 2.400000e-29 141.0
59 TraesCS3B01G174000 chr6A 91.549 71 6 0 3842 3912 522413994 522413924 1.460000e-16 99.0
60 TraesCS3B01G174000 chr2B 100.000 53 0 0 3840 3892 57652606 57652658 1.460000e-16 99.0
61 TraesCS3B01G174000 chr2B 96.610 59 1 1 3835 3892 3416938 3416880 5.270000e-16 97.1
62 TraesCS3B01G174000 chr2B 98.214 56 0 1 3838 3892 577237722 577237667 5.270000e-16 97.1
63 TraesCS3B01G174000 chr5A 98.182 55 1 0 3838 3892 117507952 117508006 5.270000e-16 97.1
64 TraesCS3B01G174000 chr2A 95.000 60 3 0 3833 3892 60738662 60738721 1.890000e-15 95.3
65 TraesCS3B01G174000 chr2A 96.552 58 1 1 3836 3892 166241221 166241278 1.890000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G174000 chr3B 174246381 174252763 6382 False 2864.000000 9178 96.988000 1 6383 4 chr3B.!!$F3 6382
1 TraesCS3B01G174000 chr3D 122585240 122596199 10959 False 927.080000 4006 92.822000 1 6383 10 chr3D.!!$F2 6382
2 TraesCS3B01G174000 chr3A 128301615 128309944 8329 False 1221.714286 3997 93.508571 182 6383 7 chr3A.!!$F2 6201
3 TraesCS3B01G174000 chr7A 594667049 594668865 1816 False 1063.500000 1722 90.222000 666 2525 2 chr7A.!!$F2 1859
4 TraesCS3B01G174000 chr7A 594698075 594702147 4072 False 975.900000 2760 92.996250 3616 6383 4 chr7A.!!$F4 2767
5 TraesCS3B01G174000 chr7A 594675823 594676913 1090 False 915.750000 1775 97.924000 2522 3710 2 chr7A.!!$F3 1188

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 584 0.038709 GCTAAAACGCCCAATGCACA 60.039 50.0 0.00 0.00 41.33 4.57 F
622 716 0.104120 TGATAATCGTGCCTCGGTGG 59.896 55.0 0.00 0.00 40.32 4.61 F
624 718 0.104304 ATAATCGTGCCTCGGTGGAC 59.896 55.0 0.00 0.00 40.32 4.02 F
664 758 0.111061 TAGGATGGGCCATGTCATGC 59.889 55.0 26.77 8.03 40.02 4.06 F
2515 6552 0.035056 CCGATCCACCAAAGGAGCTT 60.035 55.0 0.00 0.00 41.85 3.74 F
3049 7086 0.746659 GCTTGGTTGGCTTGTCTGTT 59.253 50.0 0.00 0.00 0.00 3.16 F
3870 7911 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.0 14.15 0.00 44.29 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2248 6284 0.443869 CATCGGCAAGAACCAACTCG 59.556 55.000 0.00 0.00 0.00 4.18 R
2283 6319 1.392589 CCAAATAGGCATTCCAGCGT 58.607 50.000 0.00 0.00 36.48 5.07 R
2497 6534 2.093447 ACTAAGCTCCTTTGGTGGATCG 60.093 50.000 0.00 0.00 35.30 3.69 R
2559 6596 3.888460 TGCTCCAACTGGCTGCCA 61.888 61.111 21.96 21.96 34.91 4.92 R
3882 7923 0.717196 AGTAACCTAGCCTGGACCCT 59.283 55.000 0.00 0.00 0.00 4.34 R
5010 11117 0.315568 GTCTGCTCCTCGTGTGAAGT 59.684 55.000 0.00 0.00 0.00 3.01 R
5624 11736 1.192534 GTCAGCCGAAAAGAAGTGTCG 59.807 52.381 0.00 0.00 34.58 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.773033 ACTTTGGATAATTCCTTGAATAGCAT 57.227 30.769 0.00 0.00 43.07 3.79
29 30 8.854117 ACTTTGGATAATTCCTTGAATAGCATC 58.146 33.333 0.00 0.00 43.07 3.91
38 39 3.629398 CCTTGAATAGCATCTGGTCAACC 59.371 47.826 0.00 0.00 0.00 3.77
45 46 4.255510 AGCATCTGGTCAACCCATAAAT 57.744 40.909 0.00 0.00 44.15 1.40
123 124 8.451908 AATATAACTCAAGGCAACCATTAGTC 57.548 34.615 0.00 0.00 37.17 2.59
135 136 6.058183 GCAACCATTAGTCCATAGAGAATGT 58.942 40.000 0.00 0.00 33.34 2.71
146 147 8.153550 AGTCCATAGAGAATGTCATCAATTACC 58.846 37.037 0.00 0.00 33.34 2.85
154 155 8.816640 AGAATGTCATCAATTACCAAAAACAC 57.183 30.769 0.00 0.00 0.00 3.32
164 165 0.250252 CCAAAAACACACATGGGGGC 60.250 55.000 0.00 0.00 0.00 5.80
295 296 8.152246 CCATTCACAAATATATCTGGCCAAATT 58.848 33.333 7.01 0.00 0.00 1.82
425 512 4.961511 GCGGGCTGACACGACACA 62.962 66.667 0.00 0.00 0.00 3.72
427 514 2.421739 GGGCTGACACGACACAGT 59.578 61.111 0.00 0.00 36.62 3.55
490 584 0.038709 GCTAAAACGCCCAATGCACA 60.039 50.000 0.00 0.00 41.33 4.57
497 591 1.892474 ACGCCCAATGCACAAAATAGT 59.108 42.857 0.00 0.00 41.33 2.12
512 606 6.653320 CACAAAATAGTAGGCAAACTAGTGGA 59.347 38.462 0.00 0.00 36.06 4.02
519 613 1.298859 GCAAACTAGTGGACCTGGCG 61.299 60.000 0.00 0.00 0.00 5.69
553 647 1.097547 CCCAATTAGCAGCTGGGTCG 61.098 60.000 17.12 0.00 44.24 4.79
557 651 2.876368 ATTAGCAGCTGGGTCGTGCC 62.876 60.000 17.12 0.00 37.98 5.01
560 654 4.007644 CAGCTGGGTCGTGCCTGA 62.008 66.667 5.57 0.00 37.43 3.86
608 702 3.698250 GGCACAGCCCGTATGATAA 57.302 52.632 0.00 0.00 44.06 1.75
609 703 2.185004 GGCACAGCCCGTATGATAAT 57.815 50.000 0.00 0.00 44.06 1.28
610 704 2.076863 GGCACAGCCCGTATGATAATC 58.923 52.381 0.00 0.00 44.06 1.75
611 705 1.726791 GCACAGCCCGTATGATAATCG 59.273 52.381 0.00 0.00 0.00 3.34
612 706 2.866460 GCACAGCCCGTATGATAATCGT 60.866 50.000 0.00 0.00 0.00 3.73
613 707 2.731451 CACAGCCCGTATGATAATCGTG 59.269 50.000 0.00 0.00 0.00 4.35
614 708 1.726791 CAGCCCGTATGATAATCGTGC 59.273 52.381 0.00 0.00 0.00 5.34
615 709 1.076332 GCCCGTATGATAATCGTGCC 58.924 55.000 0.00 0.00 0.00 5.01
616 710 1.337823 GCCCGTATGATAATCGTGCCT 60.338 52.381 0.00 0.00 0.00 4.75
617 711 2.607187 CCCGTATGATAATCGTGCCTC 58.393 52.381 0.00 0.00 0.00 4.70
618 712 2.251040 CCGTATGATAATCGTGCCTCG 58.749 52.381 0.00 0.00 41.41 4.63
619 713 2.251040 CGTATGATAATCGTGCCTCGG 58.749 52.381 0.00 0.00 40.32 4.63
620 714 2.351447 CGTATGATAATCGTGCCTCGGT 60.351 50.000 0.00 0.00 40.32 4.69
621 715 2.154854 ATGATAATCGTGCCTCGGTG 57.845 50.000 0.00 0.00 40.32 4.94
622 716 0.104120 TGATAATCGTGCCTCGGTGG 59.896 55.000 0.00 0.00 40.32 4.61
623 717 0.387929 GATAATCGTGCCTCGGTGGA 59.612 55.000 0.00 0.00 40.32 4.02
624 718 0.104304 ATAATCGTGCCTCGGTGGAC 59.896 55.000 0.00 0.00 40.32 4.02
625 719 0.968901 TAATCGTGCCTCGGTGGACT 60.969 55.000 0.00 0.00 40.32 3.85
626 720 2.507110 AATCGTGCCTCGGTGGACTG 62.507 60.000 0.00 0.00 40.32 3.51
627 721 4.742201 CGTGCCTCGGTGGACTGG 62.742 72.222 0.00 0.00 38.35 4.00
628 722 3.311110 GTGCCTCGGTGGACTGGA 61.311 66.667 0.00 0.00 38.35 3.86
629 723 3.311110 TGCCTCGGTGGACTGGAC 61.311 66.667 0.00 0.00 38.35 4.02
630 724 4.083862 GCCTCGGTGGACTGGACC 62.084 72.222 0.00 0.00 38.35 4.46
635 729 4.699522 GGTGGACTGGACCGTGCC 62.700 72.222 5.75 0.00 0.00 5.01
636 730 3.936203 GTGGACTGGACCGTGCCA 61.936 66.667 5.75 1.09 36.30 4.92
650 744 2.604046 GTGCCAGACACGATTAGGAT 57.396 50.000 0.00 0.00 40.07 3.24
651 745 2.205074 GTGCCAGACACGATTAGGATG 58.795 52.381 0.00 0.00 40.07 3.51
652 746 1.138859 TGCCAGACACGATTAGGATGG 59.861 52.381 0.00 0.00 0.00 3.51
653 747 1.541233 GCCAGACACGATTAGGATGGG 60.541 57.143 0.00 0.00 0.00 4.00
654 748 1.541233 CCAGACACGATTAGGATGGGC 60.541 57.143 0.00 0.00 0.00 5.36
655 749 0.759346 AGACACGATTAGGATGGGCC 59.241 55.000 0.00 0.00 0.00 5.80
656 750 0.468226 GACACGATTAGGATGGGCCA 59.532 55.000 9.61 9.61 40.02 5.36
657 751 1.072331 GACACGATTAGGATGGGCCAT 59.928 52.381 21.39 21.39 40.02 4.40
658 752 1.202806 ACACGATTAGGATGGGCCATG 60.203 52.381 26.77 10.31 40.02 3.66
659 753 1.140312 ACGATTAGGATGGGCCATGT 58.860 50.000 26.77 13.59 40.02 3.21
660 754 1.072331 ACGATTAGGATGGGCCATGTC 59.928 52.381 26.77 15.78 40.02 3.06
661 755 1.072173 CGATTAGGATGGGCCATGTCA 59.928 52.381 26.77 4.97 40.02 3.58
662 756 2.290514 CGATTAGGATGGGCCATGTCAT 60.291 50.000 26.77 12.04 40.02 3.06
663 757 2.662535 TTAGGATGGGCCATGTCATG 57.337 50.000 26.77 5.79 40.02 3.07
664 758 0.111061 TAGGATGGGCCATGTCATGC 59.889 55.000 26.77 8.03 40.02 4.06
708 802 0.180171 TTAGGATGGGCCATGTCGTG 59.820 55.000 26.77 0.00 40.02 4.35
709 803 2.324014 TAGGATGGGCCATGTCGTGC 62.324 60.000 26.77 8.03 40.02 5.34
710 804 2.124570 GATGGGCCATGTCGTGCT 60.125 61.111 26.77 0.00 0.00 4.40
711 805 2.438975 ATGGGCCATGTCGTGCTG 60.439 61.111 20.49 0.00 0.00 4.41
712 806 4.720902 TGGGCCATGTCGTGCTGG 62.721 66.667 0.00 0.00 35.53 4.85
766 882 1.603634 AATACCATTCCTTCCCGGGT 58.396 50.000 22.86 0.00 35.66 5.28
795 911 2.671963 GGTCACCGGTGAAAGGGC 60.672 66.667 37.75 24.27 41.85 5.19
797 913 1.675219 GTCACCGGTGAAAGGGCTA 59.325 57.895 37.75 11.83 41.85 3.93
859 4830 1.218316 CTACCTTCTTCGCCGGCTT 59.782 57.895 26.68 0.40 0.00 4.35
881 4852 2.676076 CTCAACTTTCCCGCCAAAATG 58.324 47.619 0.00 0.00 0.00 2.32
950 4922 1.490574 AGCCCTCACACAGATCTACC 58.509 55.000 0.00 0.00 0.00 3.18
983 4955 3.700350 CCCACCCCTCCTCCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
1047 5019 1.159098 GCGTAGTCCTCCTCGTCGAT 61.159 60.000 0.00 0.00 0.00 3.59
1060 5032 1.320344 CGTCGATCTCAACCCCCTCA 61.320 60.000 0.00 0.00 0.00 3.86
1068 5040 2.044620 AACCCCCTCATCCCCTCC 59.955 66.667 0.00 0.00 0.00 4.30
1070 5042 4.122670 CCCCCTCATCCCCTCCCA 62.123 72.222 0.00 0.00 0.00 4.37
1713 5749 0.524862 GTTCTCTTCACGGCCGTCTA 59.475 55.000 31.80 17.68 0.00 2.59
1762 5798 1.548269 AGCTCTGAGAAGAGGTTTCGG 59.452 52.381 9.28 0.00 43.20 4.30
1971 6007 3.740885 TTGGGTGTGGGGGAGGTGA 62.741 63.158 0.00 0.00 0.00 4.02
1999 6035 3.515901 GAGGTGAGGTAGTGTTGGAGATT 59.484 47.826 0.00 0.00 0.00 2.40
2026 6062 0.555769 TGAAAGGGAAGCCACTGGTT 59.444 50.000 0.00 0.00 34.19 3.67
2054 6090 1.135859 GCTGCGAGGTTGAGATTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
2064 6100 0.674895 GAGATTGTTGGCTCCACGCT 60.675 55.000 0.00 0.00 39.13 5.07
2074 6110 3.865929 CTCCACGCTGTCGCAGGTT 62.866 63.158 8.57 0.00 39.84 3.50
2143 6179 1.474077 GGGAATTGCGAGCAGTTGATT 59.526 47.619 10.48 1.72 0.00 2.57
2248 6284 1.821216 TTTTCCCACATCGGCTTCTC 58.179 50.000 0.00 0.00 0.00 2.87
2283 6319 2.011947 CGATGAGAGCAATTGCCTTCA 58.988 47.619 26.86 26.86 43.38 3.02
2284 6320 2.223203 CGATGAGAGCAATTGCCTTCAC 60.223 50.000 27.10 18.61 43.38 3.18
2515 6552 0.035056 CCGATCCACCAAAGGAGCTT 60.035 55.000 0.00 0.00 41.85 3.74
2559 6596 2.028020 GGCTGGTCAGTAAGCTACTTGT 60.028 50.000 0.00 0.00 39.46 3.16
2734 6771 6.358974 TTGTCATCTCTTGGTACTTCATCA 57.641 37.500 0.00 0.00 0.00 3.07
2745 6782 6.252599 TGGTACTTCATCAAGCCTTCATAT 57.747 37.500 0.00 0.00 32.09 1.78
2862 6899 7.063780 GGATGAAGCAGATTGTAACAAAATTGG 59.936 37.037 0.00 0.00 0.00 3.16
2965 7002 6.488715 AGATTTAGAAGCATTTCTTGGGAGT 58.511 36.000 0.00 0.00 40.79 3.85
3049 7086 0.746659 GCTTGGTTGGCTTGTCTGTT 59.253 50.000 0.00 0.00 0.00 3.16
3127 7164 3.651206 AGTAGATGATGCTTCTGATGCG 58.349 45.455 10.45 0.00 0.00 4.73
3284 7321 7.842982 AGAGTATCCTTTTTAGTCCTCAGTTC 58.157 38.462 0.00 0.00 33.66 3.01
3305 7342 1.331214 TTTTTCTTCCAGCCCTGCAG 58.669 50.000 6.78 6.78 0.00 4.41
3496 7537 9.956640 AAACAGAAGATGATAAAAGAGATCTGT 57.043 29.630 0.00 0.00 44.83 3.41
3648 7689 5.716703 AGGGCTTTATTTGTTGAGCTATTGT 59.283 36.000 0.00 0.00 35.53 2.71
3713 7754 7.459795 TTGAATGCATTGTAACCATTACAGA 57.540 32.000 18.59 0.00 45.92 3.41
3729 7770 7.094205 ACCATTACAGAGCTTTATTTGTTGAGG 60.094 37.037 0.00 0.00 0.00 3.86
3765 7806 4.693095 TGATGCTTGTGAATGTTTAGCGTA 59.307 37.500 0.00 0.00 34.65 4.42
3867 7908 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3868 7909 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3869 7910 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3870 7911 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3871 7912 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3877 7918 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3878 7919 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3879 7920 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3880 7921 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3883 7924 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3895 7936 4.537433 GCGCAGGGTCCAGGCTAG 62.537 72.222 0.30 0.00 0.00 3.42
3896 7937 3.854669 CGCAGGGTCCAGGCTAGG 61.855 72.222 0.00 0.00 0.00 3.02
3897 7938 2.689034 GCAGGGTCCAGGCTAGGT 60.689 66.667 0.00 0.00 0.00 3.08
3898 7939 2.301738 GCAGGGTCCAGGCTAGGTT 61.302 63.158 0.00 0.00 0.00 3.50
3899 7940 0.981277 GCAGGGTCCAGGCTAGGTTA 60.981 60.000 0.00 0.00 0.00 2.85
3904 7945 2.468915 GGTCCAGGCTAGGTTACTTCT 58.531 52.381 0.00 0.00 0.00 2.85
4092 10175 5.483811 TGGTTTGATCACTTGTATCGCTAA 58.516 37.500 0.00 0.00 0.00 3.09
4160 10243 2.814336 GCTAAACTGCAGGCTACAACTT 59.186 45.455 19.93 0.00 0.00 2.66
4190 10273 1.741706 CTAGGGATTTGCTGTGTGCTG 59.258 52.381 0.00 0.00 43.37 4.41
4231 10315 4.019950 TCTCATGCTTCAGTTCCAATCTGA 60.020 41.667 0.00 0.00 39.71 3.27
4244 10328 8.786898 CAGTTCCAATCTGAGAAAAGAATTGTA 58.213 33.333 0.00 0.00 35.20 2.41
4287 10371 1.146774 TGGTGCTCATTCCCCTCAAAA 59.853 47.619 0.00 0.00 0.00 2.44
4288 10372 2.247358 GGTGCTCATTCCCCTCAAAAA 58.753 47.619 0.00 0.00 0.00 1.94
4316 10400 8.988064 AGAAAAGAAAAAGAAAAGAAGTGGTC 57.012 30.769 0.00 0.00 0.00 4.02
4474 10572 8.634444 TGCTTGTTTTAGCCTTTATTTGTTCTA 58.366 29.630 0.00 0.00 40.49 2.10
4553 10660 7.789273 AGCTGAAGAAGATGACAGAAATATG 57.211 36.000 0.00 0.00 32.90 1.78
4656 10763 4.789095 TCGTAACAAAAGTGAACTCTGC 57.211 40.909 0.00 0.00 0.00 4.26
5034 11141 1.373497 CACGAGGAGCAGACACCAC 60.373 63.158 0.00 0.00 0.00 4.16
5202 11309 2.046023 CGGTCCAGGCAGCATTCA 60.046 61.111 0.00 0.00 0.00 2.57
5305 11412 4.608774 ACGGGTCGGGGTCTGACA 62.609 66.667 10.38 0.00 38.10 3.58
5624 11736 1.340248 TGTCCTGTCTTCTTCGGTGAC 59.660 52.381 0.00 0.00 0.00 3.67
5792 11904 6.345096 ACCAAAATCCAGTCCAAAAGTATG 57.655 37.500 0.00 0.00 0.00 2.39
5801 11913 5.180492 CCAGTCCAAAAGTATGTTTAGCGAA 59.820 40.000 0.00 0.00 0.00 4.70
5837 13388 3.068881 CCTCATGTGTCCCCGTGT 58.931 61.111 0.00 0.00 0.00 4.49
5890 13441 6.080648 AGCAATCAATTCATGCGATAATGT 57.919 33.333 0.00 0.00 44.60 2.71
6007 14714 2.594131 AGGGCGTGACTATATGTAGCA 58.406 47.619 0.00 0.00 0.00 3.49
6152 14865 8.785468 AATTTGAAAAATGTTAAATGCTGTGC 57.215 26.923 0.00 0.00 0.00 4.57
6162 14875 7.176285 TGTTAAATGCTGTGCAAAGAAATTC 57.824 32.000 8.49 0.00 43.62 2.17
6166 14879 9.709495 TTAAATGCTGTGCAAAGAAATTCTTAT 57.291 25.926 8.49 0.00 43.62 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.520272 TGTGTTGGTTTCAAGGAATTTATGG 58.480 36.000 0.00 0.00 32.92 2.74
45 46 3.383185 GTCCATGTGTTGGTTTCAAGGAA 59.617 43.478 0.00 0.00 46.52 3.36
123 124 8.681486 TTGGTAATTGATGACATTCTCTATGG 57.319 34.615 0.00 0.00 38.64 2.74
135 136 6.927936 CCATGTGTGTTTTTGGTAATTGATGA 59.072 34.615 0.00 0.00 0.00 2.92
146 147 0.467384 TGCCCCCATGTGTGTTTTTG 59.533 50.000 0.00 0.00 0.00 2.44
151 152 3.506743 TGGTGCCCCCATGTGTGT 61.507 61.111 0.00 0.00 38.72 3.72
164 165 3.441572 GGAGGATGAAAGAACATGTGGTG 59.558 47.826 0.00 0.00 0.00 4.17
266 267 5.536161 GGCCAGATATATTTGTGAATGGTGT 59.464 40.000 0.00 0.00 0.00 4.16
267 268 5.535783 TGGCCAGATATATTTGTGAATGGTG 59.464 40.000 0.00 0.00 0.00 4.17
268 269 5.704354 TGGCCAGATATATTTGTGAATGGT 58.296 37.500 0.00 0.00 0.00 3.55
269 270 6.653526 TTGGCCAGATATATTTGTGAATGG 57.346 37.500 5.11 0.00 0.00 3.16
330 352 4.728102 TTAGCCCGTGTCGTGCCG 62.728 66.667 0.00 0.00 29.06 5.69
381 468 4.819761 CTAGCAGCCCAAGCGCGA 62.820 66.667 12.10 0.00 46.67 5.87
384 471 1.812922 CAGACTAGCAGCCCAAGCG 60.813 63.158 0.00 0.00 46.67 4.68
490 584 6.012771 AGGTCCACTAGTTTGCCTACTATTTT 60.013 38.462 7.00 0.00 30.65 1.82
497 591 1.906574 CCAGGTCCACTAGTTTGCCTA 59.093 52.381 8.14 0.00 0.00 3.93
529 623 0.392998 CAGCTGCTAATTGGGTCGGT 60.393 55.000 0.00 0.00 0.00 4.69
537 631 1.026718 GCACGACCCAGCTGCTAATT 61.027 55.000 8.66 0.00 0.00 1.40
600 694 2.987149 CACCGAGGCACGATTATCATAC 59.013 50.000 5.74 0.00 45.77 2.39
602 696 1.270305 CCACCGAGGCACGATTATCAT 60.270 52.381 5.74 0.00 45.77 2.45
603 697 0.104120 CCACCGAGGCACGATTATCA 59.896 55.000 5.74 0.00 45.77 2.15
604 698 0.387929 TCCACCGAGGCACGATTATC 59.612 55.000 5.74 0.00 45.77 1.75
605 699 0.104304 GTCCACCGAGGCACGATTAT 59.896 55.000 5.74 0.00 45.77 1.28
606 700 0.968901 AGTCCACCGAGGCACGATTA 60.969 55.000 5.74 0.00 45.77 1.75
607 701 2.264794 GTCCACCGAGGCACGATT 59.735 61.111 5.74 0.00 45.77 3.34
608 702 2.680352 AGTCCACCGAGGCACGAT 60.680 61.111 5.74 0.00 45.77 3.73
609 703 3.680786 CAGTCCACCGAGGCACGA 61.681 66.667 5.74 0.00 45.77 4.35
610 704 4.742201 CCAGTCCACCGAGGCACG 62.742 72.222 0.00 0.00 42.18 5.34
611 705 3.311110 TCCAGTCCACCGAGGCAC 61.311 66.667 0.00 0.00 37.29 5.01
612 706 3.311110 GTCCAGTCCACCGAGGCA 61.311 66.667 0.00 0.00 37.29 4.75
613 707 4.083862 GGTCCAGTCCACCGAGGC 62.084 72.222 0.00 0.00 37.29 4.70
618 712 4.699522 GGCACGGTCCAGTCCACC 62.700 72.222 0.00 0.00 0.00 4.61
619 713 3.883744 CTGGCACGGTCCAGTCCAC 62.884 68.421 14.79 0.00 46.59 4.02
620 714 3.625897 CTGGCACGGTCCAGTCCA 61.626 66.667 14.79 0.00 46.59 4.02
631 725 2.205074 CATCCTAATCGTGTCTGGCAC 58.795 52.381 1.45 1.45 44.36 5.01
632 726 1.138859 CCATCCTAATCGTGTCTGGCA 59.861 52.381 0.00 0.00 0.00 4.92
633 727 1.541233 CCCATCCTAATCGTGTCTGGC 60.541 57.143 0.00 0.00 0.00 4.85
634 728 1.541233 GCCCATCCTAATCGTGTCTGG 60.541 57.143 0.00 0.00 0.00 3.86
635 729 1.541233 GGCCCATCCTAATCGTGTCTG 60.541 57.143 0.00 0.00 0.00 3.51
636 730 0.759346 GGCCCATCCTAATCGTGTCT 59.241 55.000 0.00 0.00 0.00 3.41
637 731 0.468226 TGGCCCATCCTAATCGTGTC 59.532 55.000 0.00 0.00 35.26 3.67
638 732 1.140312 ATGGCCCATCCTAATCGTGT 58.860 50.000 0.00 0.00 35.26 4.49
639 733 1.202806 ACATGGCCCATCCTAATCGTG 60.203 52.381 0.00 0.00 35.26 4.35
640 734 1.072331 GACATGGCCCATCCTAATCGT 59.928 52.381 0.00 0.00 35.26 3.73
641 735 1.072173 TGACATGGCCCATCCTAATCG 59.928 52.381 0.00 0.00 35.26 3.34
642 736 2.957402 TGACATGGCCCATCCTAATC 57.043 50.000 0.00 0.00 35.26 1.75
643 737 2.820485 GCATGACATGGCCCATCCTAAT 60.820 50.000 17.03 0.00 35.26 1.73
644 738 1.479205 GCATGACATGGCCCATCCTAA 60.479 52.381 17.03 0.00 35.26 2.69
645 739 0.111061 GCATGACATGGCCCATCCTA 59.889 55.000 17.03 0.00 35.26 2.94
646 740 1.152610 GCATGACATGGCCCATCCT 60.153 57.895 17.03 0.00 35.26 3.24
647 741 3.451665 GCATGACATGGCCCATCC 58.548 61.111 17.03 0.00 0.00 3.51
688 782 0.180406 ACGACATGGCCCATCCTAAC 59.820 55.000 0.00 0.00 35.26 2.34
766 882 2.903284 GGTGACCAGCGAACGTTTA 58.097 52.632 0.46 0.00 0.00 2.01
838 955 1.810030 CCGGCGAAGAAGGTAGCAC 60.810 63.158 9.30 0.00 0.00 4.40
859 4830 0.753479 TTTGGCGGGAAAGTTGAGCA 60.753 50.000 0.00 0.00 0.00 4.26
881 4852 2.158885 GCCTGTGGAGAGGGATTCTAAC 60.159 54.545 0.00 0.00 35.87 2.34
950 4922 0.897863 TGGGGAATTTGGTTGGAGCG 60.898 55.000 0.00 0.00 0.00 5.03
1047 5019 1.307866 GGGGATGAGGGGGTTGAGA 60.308 63.158 0.00 0.00 0.00 3.27
1060 5032 1.608425 CTAGGGTTTTGGGAGGGGAT 58.392 55.000 0.00 0.00 0.00 3.85
1068 5040 1.749258 GGGAGCGCTAGGGTTTTGG 60.749 63.158 11.50 0.00 0.00 3.28
1070 5042 1.002502 GTGGGAGCGCTAGGGTTTT 60.003 57.895 11.50 0.00 0.00 2.43
1486 5522 1.375326 GAGGTGGAAGGAAAGCGGT 59.625 57.895 0.00 0.00 0.00 5.68
1688 5724 1.738099 CCGTGAAGAGAACCGCCAG 60.738 63.158 0.00 0.00 0.00 4.85
1762 5798 1.971695 CACTGGCTCGAAAACCCCC 60.972 63.158 0.00 0.00 0.00 5.40
1971 6007 1.605738 ACTACCTCACCTCGCCGTT 60.606 57.895 0.00 0.00 0.00 4.44
1999 6035 0.960364 GCTTCCCTTTCACATCGGCA 60.960 55.000 0.00 0.00 0.00 5.69
2064 6100 1.836999 ATGGCTACCAACCTGCGACA 61.837 55.000 0.00 0.00 36.95 4.35
2074 6110 1.130678 TGGACACACCATGGCTACCA 61.131 55.000 13.04 11.78 44.64 3.25
2143 6179 2.293318 AACCTCGCCATCTCTGCCA 61.293 57.895 0.00 0.00 0.00 4.92
2248 6284 0.443869 CATCGGCAAGAACCAACTCG 59.556 55.000 0.00 0.00 0.00 4.18
2283 6319 1.392589 CCAAATAGGCATTCCAGCGT 58.607 50.000 0.00 0.00 36.48 5.07
2497 6534 2.093447 ACTAAGCTCCTTTGGTGGATCG 60.093 50.000 0.00 0.00 35.30 3.69
2515 6552 5.420421 CCTGATTCTCTTCTTCCTCACACTA 59.580 44.000 0.00 0.00 0.00 2.74
2559 6596 3.888460 TGCTCCAACTGGCTGCCA 61.888 61.111 21.96 21.96 34.91 4.92
2745 6782 1.310933 GGAAGGACGTGTCTCGCCTA 61.311 60.000 0.00 0.00 42.09 3.93
2794 6831 0.031716 CCCCATCCTCCTCTGAGACA 60.032 60.000 6.17 0.00 41.42 3.41
2862 6899 0.961019 TGCTTCATCCACTGGTTTGC 59.039 50.000 0.00 0.00 0.00 3.68
2965 7002 4.102210 CCTTGCTCAATCTTCTGAGGGATA 59.898 45.833 3.00 0.00 42.68 2.59
3049 7086 4.214758 CCATTCTTAATCATCAGCGCATCA 59.785 41.667 11.47 0.00 0.00 3.07
3100 7137 5.458595 TCAGAAGCATCATCTACTTCCCTA 58.541 41.667 0.00 0.00 40.54 3.53
3127 7164 6.625873 ATGGAAGCTTCGGAGATAATTTTC 57.374 37.500 19.91 2.26 35.04 2.29
3346 7384 9.696917 CAAGACAAAAAGAAAATAGTATTGCCT 57.303 29.630 0.00 0.00 0.00 4.75
3361 7402 5.812652 TGTTAAGGCGTACAAGACAAAAAG 58.187 37.500 0.00 0.00 0.00 2.27
3648 7689 4.392047 ACATTCACAAGCATCAACAGAGA 58.608 39.130 0.00 0.00 0.00 3.10
3713 7754 8.049721 AGAGCTAATACCTCAACAAATAAAGCT 58.950 33.333 0.00 0.00 38.08 3.74
3729 7770 5.582269 TCACAAGCATCAACAGAGCTAATAC 59.418 40.000 0.00 0.00 37.70 1.89
3765 7806 9.433153 GTACCTTACAAAACTACTTATGCTTCT 57.567 33.333 0.00 0.00 0.00 2.85
3844 7885 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3845 7886 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3846 7887 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3847 7888 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3848 7889 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3849 7890 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3850 7891 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3851 7892 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3852 7893 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3853 7894 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3878 7919 4.537433 CTAGCCTGGACCCTGCGC 62.537 72.222 0.00 0.00 0.00 6.09
3879 7920 3.854669 CCTAGCCTGGACCCTGCG 61.855 72.222 0.00 0.00 0.00 5.18
3880 7921 0.981277 TAACCTAGCCTGGACCCTGC 60.981 60.000 0.00 0.00 0.00 4.85
3881 7922 0.831307 GTAACCTAGCCTGGACCCTG 59.169 60.000 0.00 0.00 0.00 4.45
3882 7923 0.717196 AGTAACCTAGCCTGGACCCT 59.283 55.000 0.00 0.00 0.00 4.34
3883 7924 1.485480 GAAGTAACCTAGCCTGGACCC 59.515 57.143 0.00 0.00 0.00 4.46
3884 7925 2.468915 AGAAGTAACCTAGCCTGGACC 58.531 52.381 0.00 0.00 0.00 4.46
3885 7926 4.534797 TCTAGAAGTAACCTAGCCTGGAC 58.465 47.826 0.00 0.00 34.94 4.02
3886 7927 4.875578 TCTAGAAGTAACCTAGCCTGGA 57.124 45.455 0.00 0.00 34.94 3.86
3887 7928 5.934402 TTTCTAGAAGTAACCTAGCCTGG 57.066 43.478 5.12 0.00 34.94 4.45
3888 7929 7.824779 ACAATTTTCTAGAAGTAACCTAGCCTG 59.175 37.037 5.12 0.00 34.94 4.85
3889 7930 7.919151 ACAATTTTCTAGAAGTAACCTAGCCT 58.081 34.615 5.12 0.00 34.94 4.58
3890 7931 9.096160 GTACAATTTTCTAGAAGTAACCTAGCC 57.904 37.037 5.12 0.00 34.94 3.93
3891 7932 9.649167 TGTACAATTTTCTAGAAGTAACCTAGC 57.351 33.333 5.12 0.00 34.94 3.42
3894 7935 9.000486 GCTTGTACAATTTTCTAGAAGTAACCT 58.000 33.333 9.13 0.00 0.00 3.50
3895 7936 8.780249 TGCTTGTACAATTTTCTAGAAGTAACC 58.220 33.333 9.13 0.00 0.00 2.85
3898 7939 9.332502 TGTTGCTTGTACAATTTTCTAGAAGTA 57.667 29.630 9.13 1.97 0.00 2.24
3899 7940 8.220755 TGTTGCTTGTACAATTTTCTAGAAGT 57.779 30.769 9.13 2.95 0.00 3.01
3904 7945 7.448777 TGGGTATGTTGCTTGTACAATTTTCTA 59.551 33.333 9.13 0.00 0.00 2.10
4160 10243 6.318648 CACAGCAAATCCCTAGCAGTAAAATA 59.681 38.462 0.00 0.00 0.00 1.40
4190 10273 8.091449 AGCATGAGAGCAGTTATAGGTTATAAC 58.909 37.037 7.09 7.09 46.82 1.89
4231 10315 9.336171 GATGCTCCTATCTTACAATTCTTTTCT 57.664 33.333 0.00 0.00 0.00 2.52
4244 10328 5.879223 CACTTCTTTGTGATGCTCCTATCTT 59.121 40.000 0.00 0.00 40.12 2.40
4289 10373 9.778741 ACCACTTCTTTTCTTTTTCTTTTCTTT 57.221 25.926 0.00 0.00 0.00 2.52
4290 10374 9.424319 GACCACTTCTTTTCTTTTTCTTTTCTT 57.576 29.630 0.00 0.00 0.00 2.52
4291 10375 8.035394 GGACCACTTCTTTTCTTTTTCTTTTCT 58.965 33.333 0.00 0.00 0.00 2.52
4292 10376 8.035394 AGGACCACTTCTTTTCTTTTTCTTTTC 58.965 33.333 0.00 0.00 0.00 2.29
4302 10386 5.536538 GGAAAATGAGGACCACTTCTTTTCT 59.463 40.000 16.37 0.00 34.31 2.52
4303 10387 5.536538 AGGAAAATGAGGACCACTTCTTTTC 59.463 40.000 0.00 5.54 33.83 2.29
4316 10400 5.126707 CCTCAAAGGATCAAGGAAAATGAGG 59.873 44.000 3.83 3.83 43.67 3.86
4441 10538 2.226437 AGGCTAAAACAAGCATGTGTCG 59.774 45.455 0.00 0.00 44.64 4.35
4474 10572 5.858381 ACACAGATACATGACTCAACAGTT 58.142 37.500 0.00 0.00 30.63 3.16
4476 10574 6.162079 AGAACACAGATACATGACTCAACAG 58.838 40.000 0.00 0.00 0.00 3.16
4521 10628 7.386299 TCTGTCATCTTCTTCAGCTTTAACTTC 59.614 37.037 0.00 0.00 0.00 3.01
4577 10684 7.656137 TGTTCGGCAGGATAGTATTTCTAAATC 59.344 37.037 0.00 0.00 31.94 2.17
4608 10715 5.012458 TGGCTCCAAGAGATCCTAATATGTG 59.988 44.000 0.00 0.00 0.00 3.21
4786 10893 7.852945 GCAGTCTGATTATAAATTTGAACTCCG 59.147 37.037 3.32 0.00 0.00 4.63
5010 11117 0.315568 GTCTGCTCCTCGTGTGAAGT 59.684 55.000 0.00 0.00 0.00 3.01
5034 11141 3.978723 CTGCTCCTCGTGCCTGTCG 62.979 68.421 0.00 0.00 0.00 4.35
5063 11170 3.573772 CTGTTCCGCCGCTCACTCA 62.574 63.158 0.00 0.00 0.00 3.41
5265 11372 1.673665 CTCCGGCTGCTGCTTCTTT 60.674 57.895 15.64 0.00 39.59 2.52
5288 11395 4.608774 TGTCAGACCCCGACCCGT 62.609 66.667 0.00 0.00 32.15 5.28
5305 11412 2.483714 CGGACCCAATCGACATCATCTT 60.484 50.000 0.00 0.00 0.00 2.40
5319 11426 1.448497 GGTCTTTGACACGGACCCA 59.552 57.895 12.58 0.00 42.45 4.51
5367 11474 2.243957 CGTTCACACGCTGCTGGAA 61.244 57.895 0.00 0.00 40.18 3.53
5624 11736 1.192534 GTCAGCCGAAAAGAAGTGTCG 59.807 52.381 0.00 0.00 34.58 4.35
5696 11808 9.601971 TGTTTACTGATTAATAAAAGCGTGTTC 57.398 29.630 0.00 0.00 0.00 3.18
5837 13388 3.936453 GCCAAACGGTAGTCAATGACATA 59.064 43.478 16.38 2.61 34.60 2.29
5890 13441 0.851469 AGCCCTATCTACGGACCTGA 59.149 55.000 0.00 0.00 0.00 3.86
5942 13493 1.102154 CGGCATAACCAATCCAGCAA 58.898 50.000 0.00 0.00 39.03 3.91
6007 14714 1.197812 GTACGGATACACCAGGGGTT 58.802 55.000 0.00 0.00 38.90 4.11
6072 14782 7.969508 TGGAATTCGTTTTTAGAACTTTTTCGT 59.030 29.630 0.00 0.00 36.78 3.85
6079 14789 5.531287 AGTGCTGGAATTCGTTTTTAGAACT 59.469 36.000 0.00 0.00 0.00 3.01
6124 14837 9.934190 ACAGCATTTAACATTTTTCAAATTCAC 57.066 25.926 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.