Multiple sequence alignment - TraesCS3B01G173400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G173400
chr3B
100.000
2267
0
0
1
2267
173557502
173559768
0.000000e+00
4187
1
TraesCS3B01G173400
chr3B
91.081
370
27
6
945
1313
175953212
175952848
1.560000e-136
496
2
TraesCS3B01G173400
chr3B
76.989
352
71
10
1913
2257
654173854
654174202
2.300000e-45
193
3
TraesCS3B01G173400
chr3B
87.970
133
9
4
580
705
175953582
175953450
1.400000e-32
150
4
TraesCS3B01G173400
chr3B
89.130
92
5
4
757
844
175953369
175953279
2.380000e-20
110
5
TraesCS3B01G173400
chr3A
89.922
1419
61
33
163
1553
128164147
128165511
0.000000e+00
1753
6
TraesCS3B01G173400
chr3A
84.959
492
25
19
945
1420
130896647
130896189
9.550000e-124
453
7
TraesCS3B01G173400
chr3A
78.397
287
43
13
425
705
130897158
130896885
3.870000e-38
169
8
TraesCS3B01G173400
chr3D
91.382
1172
60
18
482
1637
121976890
121978036
0.000000e+00
1567
9
TraesCS3B01G173400
chr3D
90.156
640
46
10
1644
2267
121978103
121978741
0.000000e+00
817
10
TraesCS3B01G173400
chr3D
89.000
500
32
11
9
497
121976385
121976872
4.170000e-167
597
11
TraesCS3B01G173400
chr3D
90.058
171
9
2
586
755
123368358
123368195
4.900000e-52
215
12
TraesCS3B01G173400
chr7D
77.500
360
73
8
1913
2266
555165657
555165300
2.280000e-50
209
13
TraesCS3B01G173400
chr6B
77.410
363
67
14
1913
2266
591514920
591514564
3.820000e-48
202
14
TraesCS3B01G173400
chr6B
77.410
363
67
14
1913
2266
591517226
591516870
3.820000e-48
202
15
TraesCS3B01G173400
chrUn
77.135
363
68
14
1913
2266
398717110
398717466
1.780000e-46
196
16
TraesCS3B01G173400
chr1B
76.630
368
69
15
1911
2266
801011
801373
1.070000e-43
187
17
TraesCS3B01G173400
chr6D
76.899
316
61
11
1913
2221
398172091
398171781
3.870000e-38
169
18
TraesCS3B01G173400
chr7A
74.799
373
79
12
1904
2266
26578062
26578429
1.080000e-33
154
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G173400
chr3B
173557502
173559768
2266
False
4187.000000
4187
100.000000
1
2267
1
chr3B.!!$F1
2266
1
TraesCS3B01G173400
chr3B
175952848
175953582
734
True
252.000000
496
89.393667
580
1313
3
chr3B.!!$R1
733
2
TraesCS3B01G173400
chr3A
128164147
128165511
1364
False
1753.000000
1753
89.922000
163
1553
1
chr3A.!!$F1
1390
3
TraesCS3B01G173400
chr3A
130896189
130897158
969
True
311.000000
453
81.678000
425
1420
2
chr3A.!!$R1
995
4
TraesCS3B01G173400
chr3D
121976385
121978741
2356
False
993.666667
1567
90.179333
9
2267
3
chr3D.!!$F1
2258
5
TraesCS3B01G173400
chr6B
591514564
591517226
2662
True
202.000000
202
77.410000
1913
2266
2
chr6B.!!$R1
353
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
407
426
0.042188
CAAACGCAAGGTCTCACGTG
60.042
55.0
9.94
9.94
46.39
4.49
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1338
1462
0.105039
CTCCCAGGTCCATCGTAAGC
59.895
60.0
0.0
0.0
37.18
3.09
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
20
21
2.277692
TACGCGACGGCATCTTCG
60.278
61.111
15.93
0.00
39.92
3.79
73
74
2.246719
AATACAATGAGCTCCCTCGC
57.753
50.000
12.15
0.00
41.13
5.03
79
80
1.639635
ATGAGCTCCCTCGCCCATTT
61.640
55.000
12.15
0.00
41.13
2.32
116
117
4.021016
TCAGTGGAAAAGAGCTCCTAAGAC
60.021
45.833
10.93
0.61
33.77
3.01
123
124
2.501610
GCTCCTAAGACTGGGGCG
59.498
66.667
0.00
0.00
41.63
6.13
124
125
2.058595
GCTCCTAAGACTGGGGCGA
61.059
63.158
0.00
0.00
41.63
5.54
126
127
1.996798
CTCCTAAGACTGGGGCGATA
58.003
55.000
0.00
0.00
0.00
2.92
127
128
2.530701
CTCCTAAGACTGGGGCGATAT
58.469
52.381
0.00
0.00
0.00
1.63
128
129
3.698289
CTCCTAAGACTGGGGCGATATA
58.302
50.000
0.00
0.00
0.00
0.86
129
130
3.428532
TCCTAAGACTGGGGCGATATAC
58.571
50.000
0.00
0.00
0.00
1.47
131
132
3.056749
CCTAAGACTGGGGCGATATACAC
60.057
52.174
0.00
0.00
0.00
2.90
143
155
6.047231
GGGCGATATACACTACTCTGTTTTT
58.953
40.000
0.00
0.00
0.00
1.94
265
277
1.659794
GCCATGAAACAAGTGCCGT
59.340
52.632
0.00
0.00
0.00
5.68
309
321
3.864583
TCTACGTTGTTACTGCACGTTTT
59.135
39.130
11.68
0.00
38.10
2.43
327
345
3.396260
TTTCGTCCCTACAAAGTCCTG
57.604
47.619
0.00
0.00
0.00
3.86
407
426
0.042188
CAAACGCAAGGTCTCACGTG
60.042
55.000
9.94
9.94
46.39
4.49
408
427
0.461339
AAACGCAAGGTCTCACGTGT
60.461
50.000
16.51
0.00
46.39
4.49
409
428
0.874607
AACGCAAGGTCTCACGTGTC
60.875
55.000
16.51
7.46
46.39
3.67
410
429
1.299850
CGCAAGGTCTCACGTGTCA
60.300
57.895
16.51
0.00
0.00
3.58
411
430
1.548973
CGCAAGGTCTCACGTGTCAC
61.549
60.000
16.51
12.76
0.00
3.67
435
454
1.087771
CACGCCCATAAACCCTCGTC
61.088
60.000
0.00
0.00
0.00
4.20
572
625
1.276138
CATTTCTGCCACCTTTTCCCC
59.724
52.381
0.00
0.00
0.00
4.81
623
676
4.351938
CAGGGCGTCGTTGACCGA
62.352
66.667
0.00
0.00
44.11
4.69
630
683
2.915659
TCGTTGACCGACCTGCCT
60.916
61.111
0.00
0.00
41.60
4.75
747
835
1.443872
GCACACGTACTGGGTCTCG
60.444
63.158
0.00
0.00
0.00
4.04
751
850
0.809385
CACGTACTGGGTCTCGACAT
59.191
55.000
0.00
0.00
0.00
3.06
823
925
2.165319
AACTACCAAACTCTCCGTGC
57.835
50.000
0.00
0.00
0.00
5.34
833
935
1.269102
ACTCTCCGTGCGATATTTCCG
60.269
52.381
0.00
0.00
0.00
4.30
898
1000
2.744709
GCCTTGCCCGCTTCGTTA
60.745
61.111
0.00
0.00
0.00
3.18
987
1094
1.075600
GCCTCCTAGCCTGGTCTCT
60.076
63.158
0.00
0.00
0.00
3.10
1268
1376
4.849310
GGGCGCCGGCAACTGATA
62.849
66.667
28.98
0.00
42.47
2.15
1269
1377
3.573491
GGCGCCGGCAACTGATAC
61.573
66.667
28.98
4.21
42.47
2.24
1300
1409
1.592081
CGTACGTCTAGTCTTCTCCCG
59.408
57.143
7.22
0.00
0.00
5.14
1365
1489
0.333652
TGGACCTGGGAGACGATGTA
59.666
55.000
0.00
0.00
0.00
2.29
1374
1498
4.194640
TGGGAGACGATGTACTACTGTAC
58.805
47.826
0.00
0.00
46.74
2.90
1425
1549
4.182339
GCTAGCTAGCTACGAAGGTTTTT
58.818
43.478
33.71
0.00
45.62
1.94
1426
1550
4.268167
GCTAGCTAGCTACGAAGGTTTTTC
59.732
45.833
33.71
3.53
45.62
2.29
1427
1551
4.538746
AGCTAGCTACGAAGGTTTTTCT
57.461
40.909
17.69
0.00
34.60
2.52
1428
1552
5.656213
AGCTAGCTACGAAGGTTTTTCTA
57.344
39.130
17.69
0.00
34.60
2.10
1429
1553
6.223351
AGCTAGCTACGAAGGTTTTTCTAT
57.777
37.500
17.69
0.00
34.60
1.98
1430
1554
7.344095
AGCTAGCTACGAAGGTTTTTCTATA
57.656
36.000
17.69
0.00
34.60
1.31
1431
1555
7.953752
AGCTAGCTACGAAGGTTTTTCTATAT
58.046
34.615
17.69
0.00
34.60
0.86
1563
1700
2.143122
GTGTGAAACTGAGGATTGCGA
58.857
47.619
0.00
0.00
38.04
5.10
1630
1771
9.265901
CATGTATAATATTGCTCTGGGTATAGC
57.734
37.037
0.00
0.00
39.25
2.97
1637
1778
3.643237
TGCTCTGGGTATAGCTAGTTGT
58.357
45.455
14.09
0.00
39.53
3.32
1638
1779
3.384789
TGCTCTGGGTATAGCTAGTTGTG
59.615
47.826
14.09
5.85
39.53
3.33
1639
1780
3.385111
GCTCTGGGTATAGCTAGTTGTGT
59.615
47.826
14.09
0.00
35.80
3.72
1640
1781
4.141914
GCTCTGGGTATAGCTAGTTGTGTT
60.142
45.833
14.09
0.00
35.80
3.32
1641
1782
5.627040
GCTCTGGGTATAGCTAGTTGTGTTT
60.627
44.000
14.09
0.00
35.80
2.83
1642
1783
5.974108
TCTGGGTATAGCTAGTTGTGTTTC
58.026
41.667
14.09
0.00
0.00
2.78
1643
1784
5.482526
TCTGGGTATAGCTAGTTGTGTTTCA
59.517
40.000
14.09
0.00
0.00
2.69
1644
1785
6.014070
TCTGGGTATAGCTAGTTGTGTTTCAA
60.014
38.462
14.09
0.00
0.00
2.69
1645
1786
6.535540
TGGGTATAGCTAGTTGTGTTTCAAA
58.464
36.000
0.00
0.00
37.81
2.69
1649
1790
4.292977
AGCTAGTTGTGTTTCAAAGTGC
57.707
40.909
0.00
0.00
37.81
4.40
1650
1791
3.694072
AGCTAGTTGTGTTTCAAAGTGCA
59.306
39.130
0.00
0.00
37.81
4.57
1651
1792
4.037690
GCTAGTTGTGTTTCAAAGTGCAG
58.962
43.478
0.00
0.00
37.81
4.41
1652
1793
2.879826
AGTTGTGTTTCAAAGTGCAGC
58.120
42.857
0.00
0.00
37.81
5.25
1654
1795
2.992543
GTTGTGTTTCAAAGTGCAGCAA
59.007
40.909
0.00
0.00
37.81
3.91
1655
1796
3.309961
TGTGTTTCAAAGTGCAGCAAA
57.690
38.095
0.00
0.00
0.00
3.68
1656
1797
3.657634
TGTGTTTCAAAGTGCAGCAAAA
58.342
36.364
0.00
0.00
0.00
2.44
1657
1798
3.431572
TGTGTTTCAAAGTGCAGCAAAAC
59.568
39.130
11.27
11.27
0.00
2.43
1658
1799
3.431572
GTGTTTCAAAGTGCAGCAAAACA
59.568
39.130
15.37
15.37
35.07
2.83
1659
1800
4.093261
GTGTTTCAAAGTGCAGCAAAACAT
59.907
37.500
20.11
0.00
38.44
2.71
1660
1801
5.290643
GTGTTTCAAAGTGCAGCAAAACATA
59.709
36.000
20.11
1.91
38.44
2.29
1678
1878
8.820933
CAAAACATATGTGACCTATCTGTACTG
58.179
37.037
9.63
0.00
0.00
2.74
1743
1950
0.688087
CCAGACCCCCTACTCCTGTC
60.688
65.000
0.00
0.00
0.00
3.51
1744
1951
0.688087
CAGACCCCCTACTCCTGTCC
60.688
65.000
0.00
0.00
0.00
4.02
1746
1953
2.363361
CCCCCTACTCCTGTCCGT
59.637
66.667
0.00
0.00
0.00
4.69
1750
1957
2.490217
CTACTCCTGTCCGTGCGG
59.510
66.667
3.94
3.94
0.00
5.69
1825
2033
1.668151
GGGTTGTCTCGCACACCTC
60.668
63.158
0.00
0.00
33.41
3.85
1863
2071
3.942748
GTGGGGCGTGTTAGAATATTTCA
59.057
43.478
0.00
0.00
0.00
2.69
1869
2077
6.456988
GGGCGTGTTAGAATATTTCAAGACAG
60.457
42.308
9.46
5.29
0.00
3.51
1873
2081
8.926710
CGTGTTAGAATATTTCAAGACAGAAGT
58.073
33.333
9.46
0.00
0.00
3.01
1883
2091
6.419484
TTCAAGACAGAAGTTGATCTACCA
57.581
37.500
3.54
0.00
32.79
3.25
1885
2093
6.826668
TCAAGACAGAAGTTGATCTACCAAA
58.173
36.000
3.54
0.00
0.00
3.28
1892
2100
9.793259
ACAGAAGTTGATCTACCAAAGATTAAA
57.207
29.630
3.54
0.00
45.35
1.52
1934
2142
8.691727
CGATCGAGATTTGTTAACGAGATTTAT
58.308
33.333
10.26
0.00
36.49
1.40
1987
4501
2.324541
GGGTGCTCCTCTCTGTGATAT
58.675
52.381
4.53
0.00
0.00
1.63
1988
4502
2.703007
GGGTGCTCCTCTCTGTGATATT
59.297
50.000
4.53
0.00
0.00
1.28
1990
4504
3.133721
GGTGCTCCTCTCTGTGATATTGT
59.866
47.826
0.00
0.00
0.00
2.71
2016
4530
3.535629
CTGCACACCGGCCTCTCAA
62.536
63.158
0.00
0.00
0.00
3.02
2031
4545
0.390866
CTCAAGAGCCGACACATGCT
60.391
55.000
0.00
0.00
41.42
3.79
2056
4571
0.106894
TTCCCGTGTGCACATGTGTA
59.893
50.000
31.61
20.04
0.00
2.90
2058
4573
0.237235
CCCGTGTGCACATGTGTAAC
59.763
55.000
31.61
22.86
37.35
2.50
2154
4671
3.383825
ACACGGCTCTATACCCTGTTTAG
59.616
47.826
0.00
0.00
0.00
1.85
2156
4673
2.963782
CGGCTCTATACCCTGTTTAGGT
59.036
50.000
0.00
0.00
42.96
3.08
2243
4765
8.950210
ACAAATTCACATTGTCGAATATTCTCT
58.050
29.630
13.45
0.00
36.28
3.10
2244
4766
9.430838
CAAATTCACATTGTCGAATATTCTCTC
57.569
33.333
13.45
4.58
31.65
3.20
2245
4767
8.954950
AATTCACATTGTCGAATATTCTCTCT
57.045
30.769
13.45
0.00
31.65
3.10
2258
4780
9.534565
CGAATATTCTCTCTCACCTTAAATTCA
57.465
33.333
13.45
0.00
0.00
2.57
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
1.472276
GAAGATGCCGTCGCGTACTG
61.472
60.000
5.77
0.74
38.08
2.74
1
2
1.226603
GAAGATGCCGTCGCGTACT
60.227
57.895
5.77
0.00
38.08
2.73
2
3
2.565394
CGAAGATGCCGTCGCGTAC
61.565
63.158
5.77
1.94
37.46
3.67
4
5
2.531927
TTACGAAGATGCCGTCGCGT
62.532
55.000
5.77
11.45
45.79
6.01
5
6
1.407721
TTTACGAAGATGCCGTCGCG
61.408
55.000
0.00
0.00
45.79
5.87
6
7
0.024619
GTTTACGAAGATGCCGTCGC
59.975
55.000
0.00
0.00
45.79
5.19
7
8
1.625616
AGTTTACGAAGATGCCGTCG
58.374
50.000
0.00
0.00
46.93
5.12
10
11
3.160777
ACCTAGTTTACGAAGATGCCG
57.839
47.619
0.00
0.00
0.00
5.69
13
14
6.866770
TGTTCAGAACCTAGTTTACGAAGATG
59.133
38.462
10.93
0.00
0.00
2.90
47
48
5.815581
AGGGAGCTCATTGTATTTGTGTAA
58.184
37.500
17.19
0.00
0.00
2.41
48
49
5.428253
GAGGGAGCTCATTGTATTTGTGTA
58.572
41.667
17.19
0.00
0.00
2.90
49
50
4.265073
GAGGGAGCTCATTGTATTTGTGT
58.735
43.478
17.19
0.00
0.00
3.72
58
59
2.203126
GGGCGAGGGAGCTCATTG
60.203
66.667
17.19
8.50
37.60
2.82
59
60
2.688666
TGGGCGAGGGAGCTCATT
60.689
61.111
17.19
1.94
43.63
2.57
79
80
6.582677
TTTCCACTGAGTCACAAAAGAAAA
57.417
33.333
0.00
0.00
0.00
2.29
82
83
5.496556
TCTTTTCCACTGAGTCACAAAAGA
58.503
37.500
14.34
14.34
31.88
2.52
83
84
5.731686
GCTCTTTTCCACTGAGTCACAAAAG
60.732
44.000
11.33
11.33
0.00
2.27
91
92
2.334023
AGGAGCTCTTTTCCACTGAGT
58.666
47.619
14.64
0.00
37.18
3.41
95
96
4.020662
CAGTCTTAGGAGCTCTTTTCCACT
60.021
45.833
14.64
6.34
37.18
4.00
98
99
3.369997
CCCAGTCTTAGGAGCTCTTTTCC
60.370
52.174
14.64
0.00
34.83
3.13
116
117
3.191581
CAGAGTAGTGTATATCGCCCCAG
59.808
52.174
0.00
0.00
0.00
4.45
143
155
1.873903
GCCGAGCTGTGTGAGAGAAAA
60.874
52.381
0.00
0.00
0.00
2.29
152
164
1.001378
GTCAATTTTGCCGAGCTGTGT
60.001
47.619
0.00
0.00
0.00
3.72
156
168
2.161855
TGATGTCAATTTTGCCGAGCT
58.838
42.857
0.00
0.00
0.00
4.09
161
173
4.168760
GTGTAGCTGATGTCAATTTTGCC
58.831
43.478
0.00
0.00
0.00
4.52
309
321
1.203087
TCCAGGACTTTGTAGGGACGA
60.203
52.381
0.00
0.00
0.00
4.20
346
364
2.231478
CAGCTTTCTTGTCGAGGACCTA
59.769
50.000
0.00
0.00
0.00
3.08
407
426
0.108709
TTATGGGCGTGGTACGTGAC
60.109
55.000
0.00
0.00
44.73
3.67
408
427
0.607112
TTTATGGGCGTGGTACGTGA
59.393
50.000
0.00
0.00
44.73
4.35
409
428
0.722848
GTTTATGGGCGTGGTACGTG
59.277
55.000
0.00
0.00
44.73
4.49
410
429
0.391528
GGTTTATGGGCGTGGTACGT
60.392
55.000
0.00
0.00
44.73
3.57
411
430
1.091197
GGGTTTATGGGCGTGGTACG
61.091
60.000
0.00
0.00
45.88
3.67
412
431
0.253894
AGGGTTTATGGGCGTGGTAC
59.746
55.000
0.00
0.00
0.00
3.34
413
432
0.542805
GAGGGTTTATGGGCGTGGTA
59.457
55.000
0.00
0.00
0.00
3.25
423
442
0.248289
CGGGTGTGACGAGGGTTTAT
59.752
55.000
0.00
0.00
0.00
1.40
435
454
0.455815
TGATCGATCTGACGGGTGTG
59.544
55.000
25.02
0.00
0.00
3.82
518
571
4.678743
AGGCCCGCCTTTTGGACC
62.679
66.667
1.26
0.00
45.70
4.46
629
682
4.374702
GTTGACAGCCGCGTGCAG
62.375
66.667
19.30
14.50
44.83
4.41
630
683
4.908687
AGTTGACAGCCGCGTGCA
62.909
61.111
19.30
6.15
44.83
4.57
639
699
1.656441
GTGCCTTGGCAGTTGACAG
59.344
57.895
15.31
0.00
32.66
3.51
823
925
1.416049
CGCGCCATCGGAAATATCG
59.584
57.895
0.00
0.00
35.95
2.92
857
959
2.258726
CCTTTAATAGCGCCGGGCC
61.259
63.158
14.55
6.41
45.17
5.80
885
987
1.514087
CTAGGTAACGAAGCGGGCA
59.486
57.895
0.00
0.00
46.39
5.36
898
1000
0.323908
AAGGTCTGAGCTCGCTAGGT
60.324
55.000
10.15
0.00
35.73
3.08
987
1094
2.372264
GTCTCCATGTACGTCCACCTA
58.628
52.381
0.00
0.00
0.00
3.08
1338
1462
0.105039
CTCCCAGGTCCATCGTAAGC
59.895
60.000
0.00
0.00
37.18
3.09
1365
1489
9.676861
TGCATATACGGATAATAGTACAGTAGT
57.323
33.333
0.00
0.00
0.00
2.73
1374
1498
8.012809
GTCGATCTCTGCATATACGGATAATAG
58.987
40.741
0.00
0.00
0.00
1.73
1477
1614
3.004171
ACGCGTCCAAATTAGCATACAA
58.996
40.909
5.58
0.00
0.00
2.41
1627
1768
4.878971
TGCACTTTGAAACACAACTAGCTA
59.121
37.500
0.00
0.00
38.29
3.32
1630
1771
4.037690
GCTGCACTTTGAAACACAACTAG
58.962
43.478
0.00
0.00
38.29
2.57
1637
1778
3.657634
TGTTTTGCTGCACTTTGAAACA
58.342
36.364
19.84
19.84
35.40
2.83
1638
1779
4.863152
ATGTTTTGCTGCACTTTGAAAC
57.137
36.364
16.10
16.10
0.00
2.78
1639
1780
6.018913
CACATATGTTTTGCTGCACTTTGAAA
60.019
34.615
5.37
0.00
0.00
2.69
1640
1781
5.462729
CACATATGTTTTGCTGCACTTTGAA
59.537
36.000
5.37
0.00
0.00
2.69
1641
1782
4.983538
CACATATGTTTTGCTGCACTTTGA
59.016
37.500
5.37
0.00
0.00
2.69
1642
1783
4.983538
TCACATATGTTTTGCTGCACTTTG
59.016
37.500
5.37
0.00
0.00
2.77
1643
1784
4.984161
GTCACATATGTTTTGCTGCACTTT
59.016
37.500
5.37
0.00
0.00
2.66
1644
1785
4.549458
GTCACATATGTTTTGCTGCACTT
58.451
39.130
5.37
0.00
0.00
3.16
1645
1786
3.057315
GGTCACATATGTTTTGCTGCACT
60.057
43.478
5.37
0.00
0.00
4.40
1649
1790
6.317140
ACAGATAGGTCACATATGTTTTGCTG
59.683
38.462
5.37
9.75
0.00
4.41
1650
1791
6.418101
ACAGATAGGTCACATATGTTTTGCT
58.582
36.000
5.37
0.00
0.00
3.91
1651
1792
6.683974
ACAGATAGGTCACATATGTTTTGC
57.316
37.500
5.37
0.00
0.00
3.68
1652
1793
8.820933
CAGTACAGATAGGTCACATATGTTTTG
58.179
37.037
5.37
0.00
30.85
2.44
1654
1795
7.125811
ACCAGTACAGATAGGTCACATATGTTT
59.874
37.037
5.37
0.00
30.85
2.83
1655
1796
6.611642
ACCAGTACAGATAGGTCACATATGTT
59.388
38.462
5.37
0.00
30.85
2.71
1656
1797
6.136857
ACCAGTACAGATAGGTCACATATGT
58.863
40.000
1.41
1.41
32.84
2.29
1657
1798
6.656632
ACCAGTACAGATAGGTCACATATG
57.343
41.667
0.00
0.00
0.00
1.78
1658
1799
8.958060
AATACCAGTACAGATAGGTCACATAT
57.042
34.615
0.00
0.00
35.62
1.78
1659
1800
8.002459
TGAATACCAGTACAGATAGGTCACATA
58.998
37.037
0.00
0.00
35.62
2.29
1660
1801
6.839134
TGAATACCAGTACAGATAGGTCACAT
59.161
38.462
0.00
0.00
35.62
3.21
1721
1921
0.929734
AGGAGTAGGGGGTCTGGCTA
60.930
60.000
0.00
0.00
0.00
3.93
1727
1927
1.757340
CGGACAGGAGTAGGGGGTC
60.757
68.421
0.00
0.00
0.00
4.46
1750
1957
2.018515
TGTTTTTCTGTTCGGGGTGTC
58.981
47.619
0.00
0.00
0.00
3.67
1752
1959
2.621055
TGATGTTTTTCTGTTCGGGGTG
59.379
45.455
0.00
0.00
0.00
4.61
1754
1961
2.030274
GGTGATGTTTTTCTGTTCGGGG
60.030
50.000
0.00
0.00
0.00
5.73
1808
2016
0.531974
TTGAGGTGTGCGAGACAACC
60.532
55.000
0.00
0.00
44.23
3.77
1809
2017
1.003866
GTTTGAGGTGTGCGAGACAAC
60.004
52.381
0.00
0.00
43.38
3.32
1825
2033
2.026641
CCCACATATGAGCTGGGTTTG
58.973
52.381
17.91
0.51
40.04
2.93
1863
2071
7.067496
TCTTTGGTAGATCAACTTCTGTCTT
57.933
36.000
0.00
0.00
0.00
3.01
1873
2081
9.638239
GCAATTGTTTAATCTTTGGTAGATCAA
57.362
29.630
7.40
0.00
42.90
2.57
1883
2091
6.401367
GCGCTTCATGCAATTGTTTAATCTTT
60.401
34.615
7.40
0.00
43.06
2.52
1885
2093
4.563976
GCGCTTCATGCAATTGTTTAATCT
59.436
37.500
7.40
0.00
43.06
2.40
1892
2100
0.452987
ATCGCGCTTCATGCAATTGT
59.547
45.000
5.56
0.00
43.06
2.71
1934
2142
6.489700
TGTTCCAAAGATTAGCTGATGTTTGA
59.510
34.615
30.79
19.11
40.67
2.69
1987
4501
1.870402
CGGTGTGCAGTATTGTCACAA
59.130
47.619
13.92
0.00
40.45
3.33
1988
4502
1.507562
CGGTGTGCAGTATTGTCACA
58.492
50.000
10.04
10.04
38.28
3.58
1990
4504
0.953471
GCCGGTGTGCAGTATTGTCA
60.953
55.000
1.90
0.00
0.00
3.58
2016
4530
2.435586
GCAGCATGTGTCGGCTCT
60.436
61.111
0.00
0.00
38.56
4.09
2042
4556
3.963665
ACATTGTTACACATGTGCACAC
58.036
40.909
24.37
18.54
29.83
3.82
2056
4571
6.318648
ACGATGTAATCTATGCCAACATTGTT
59.681
34.615
0.00
0.00
40.58
2.83
2058
4573
6.138088
CACGATGTAATCTATGCCAACATTG
58.862
40.000
0.00
0.00
42.58
2.82
2059
4574
5.822519
ACACGATGTAATCTATGCCAACATT
59.177
36.000
0.00
0.00
42.58
2.71
2171
4688
7.601508
GTGTATAAGGTAGGTTACATATGCACC
59.398
40.741
14.43
14.43
38.33
5.01
2243
4765
5.508567
TGCATGGATGAATTTAAGGTGAGA
58.491
37.500
0.00
0.00
0.00
3.27
2244
4766
5.840243
TGCATGGATGAATTTAAGGTGAG
57.160
39.130
0.00
0.00
0.00
3.51
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.