Multiple sequence alignment - TraesCS3B01G172500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G172500
chr3B
100.000
2264
0
0
1
2264
173075512
173077775
0.000000e+00
4181.0
1
TraesCS3B01G172500
chr2D
93.377
1223
74
4
645
1866
641205460
641204244
0.000000e+00
1803.0
2
TraesCS3B01G172500
chr6D
92.457
1233
79
5
645
1866
293060304
293059075
0.000000e+00
1749.0
3
TraesCS3B01G172500
chr6D
89.825
855
67
14
1
836
293061038
293060185
0.000000e+00
1079.0
4
TraesCS3B01G172500
chr3D
89.061
1417
115
11
645
2024
62369953
62368540
0.000000e+00
1722.0
5
TraesCS3B01G172500
chr3D
89.789
852
59
16
1
829
549427507
549428353
0.000000e+00
1066.0
6
TraesCS3B01G172500
chr3D
89.240
855
72
12
1
836
62370687
62369834
0.000000e+00
1051.0
7
TraesCS3B01G172500
chr5B
89.424
1267
104
15
656
1908
428831940
428833190
0.000000e+00
1570.0
8
TraesCS3B01G172500
chr5B
89.943
1223
106
9
645
1866
578836893
578835687
0.000000e+00
1561.0
9
TraesCS3B01G172500
chr5B
89.170
1265
111
12
656
1908
428826489
428827739
0.000000e+00
1554.0
10
TraesCS3B01G172500
chr5B
89.591
855
69
12
1
836
491841038
491840185
0.000000e+00
1068.0
11
TraesCS3B01G172500
chr5B
91.316
737
48
10
1
721
565841710
565842446
0.000000e+00
992.0
12
TraesCS3B01G172500
chr5B
100.000
31
0
0
2119
2149
297112670
297112640
8.730000e-05
58.4
13
TraesCS3B01G172500
chr2B
89.424
1267
103
19
656
1908
29753886
29752637
0.000000e+00
1568.0
14
TraesCS3B01G172500
chr2B
85.417
192
22
1
2073
2264
596100845
596101030
6.380000e-46
195.0
15
TraesCS3B01G172500
chr2B
81.481
108
13
3
1920
2026
102804385
102804486
5.180000e-12
82.4
16
TraesCS3B01G172500
chr7B
89.336
1266
107
14
656
1908
27327257
27328507
0.000000e+00
1565.0
17
TraesCS3B01G172500
chr7B
88.902
856
74
10
1
836
315291461
315290607
0.000000e+00
1035.0
18
TraesCS3B01G172500
chr7B
83.478
115
17
2
1910
2023
34280114
34280001
3.080000e-19
106.0
19
TraesCS3B01G172500
chr4B
88.862
1239
113
15
677
1908
74252598
74253818
0.000000e+00
1500.0
20
TraesCS3B01G172500
chr5D
89.161
858
71
12
1
836
313383557
313382700
0.000000e+00
1050.0
21
TraesCS3B01G172500
chr5D
88.717
842
70
13
1
823
485079130
485078295
0.000000e+00
1005.0
22
TraesCS3B01G172500
chr1D
89.006
855
66
13
1
836
297552218
297551373
0.000000e+00
1033.0
23
TraesCS3B01G172500
chr1D
90.155
193
17
2
2072
2264
487706895
487706705
1.340000e-62
250.0
24
TraesCS3B01G172500
chr4A
83.420
193
27
1
2072
2264
737662666
737662853
8.310000e-40
174.0
25
TraesCS3B01G172500
chr3A
90.909
110
10
0
656
765
145558262
145558153
5.040000e-32
148.0
26
TraesCS3B01G172500
chr3A
89.565
115
12
0
651
765
22603613
22603499
1.810000e-31
147.0
27
TraesCS3B01G172500
chr7D
91.346
104
9
0
1920
2023
16797420
16797317
2.340000e-30
143.0
28
TraesCS3B01G172500
chr7D
91.346
104
9
0
1920
2023
16797491
16797388
2.340000e-30
143.0
29
TraesCS3B01G172500
chr7D
87.500
104
13
0
1920
2023
16797562
16797459
1.100000e-23
121.0
30
TraesCS3B01G172500
chr7A
85.000
100
15
0
1924
2023
7462546
7462447
3.980000e-18
102.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G172500
chr3B
173075512
173077775
2263
False
4181.0
4181
100.0000
1
2264
1
chr3B.!!$F1
2263
1
TraesCS3B01G172500
chr2D
641204244
641205460
1216
True
1803.0
1803
93.3770
645
1866
1
chr2D.!!$R1
1221
2
TraesCS3B01G172500
chr6D
293059075
293061038
1963
True
1414.0
1749
91.1410
1
1866
2
chr6D.!!$R1
1865
3
TraesCS3B01G172500
chr3D
62368540
62370687
2147
True
1386.5
1722
89.1505
1
2024
2
chr3D.!!$R1
2023
4
TraesCS3B01G172500
chr3D
549427507
549428353
846
False
1066.0
1066
89.7890
1
829
1
chr3D.!!$F1
828
5
TraesCS3B01G172500
chr5B
428831940
428833190
1250
False
1570.0
1570
89.4240
656
1908
1
chr5B.!!$F2
1252
6
TraesCS3B01G172500
chr5B
578835687
578836893
1206
True
1561.0
1561
89.9430
645
1866
1
chr5B.!!$R3
1221
7
TraesCS3B01G172500
chr5B
428826489
428827739
1250
False
1554.0
1554
89.1700
656
1908
1
chr5B.!!$F1
1252
8
TraesCS3B01G172500
chr5B
491840185
491841038
853
True
1068.0
1068
89.5910
1
836
1
chr5B.!!$R2
835
9
TraesCS3B01G172500
chr5B
565841710
565842446
736
False
992.0
992
91.3160
1
721
1
chr5B.!!$F3
720
10
TraesCS3B01G172500
chr2B
29752637
29753886
1249
True
1568.0
1568
89.4240
656
1908
1
chr2B.!!$R1
1252
11
TraesCS3B01G172500
chr7B
27327257
27328507
1250
False
1565.0
1565
89.3360
656
1908
1
chr7B.!!$F1
1252
12
TraesCS3B01G172500
chr7B
315290607
315291461
854
True
1035.0
1035
88.9020
1
836
1
chr7B.!!$R2
835
13
TraesCS3B01G172500
chr4B
74252598
74253818
1220
False
1500.0
1500
88.8620
677
1908
1
chr4B.!!$F1
1231
14
TraesCS3B01G172500
chr5D
313382700
313383557
857
True
1050.0
1050
89.1610
1
836
1
chr5D.!!$R1
835
15
TraesCS3B01G172500
chr5D
485078295
485079130
835
True
1005.0
1005
88.7170
1
823
1
chr5D.!!$R2
822
16
TraesCS3B01G172500
chr1D
297551373
297552218
845
True
1033.0
1033
89.0060
1
836
1
chr1D.!!$R1
835
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
789
1003
1.157513
TGCTAGAGGTGGTGGTGGA
59.842
57.895
0.0
0.0
0.0
4.02
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2093
2360
0.039527
GTTGCCCAAGTAGCCAAACG
60.04
55.0
0.0
0.0
0.0
3.6
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
127
129
8.473358
AATGATCTATCAAATTGATGAGCCAA
57.527
30.769
17.93
3.37
40.69
4.52
144
146
1.229428
CAAGTGGCACAACACGAGAT
58.771
50.000
21.41
0.00
44.16
2.75
210
213
1.672356
GTGGTGCCAGTGCGAGATT
60.672
57.895
0.00
0.00
41.78
2.40
376
379
2.054021
TCTTGGACCAATCACAGTGGA
58.946
47.619
7.54
0.00
39.62
4.02
426
429
2.192263
GACCCTCTCTTGAAGGTGGAT
58.808
52.381
0.00
0.00
37.16
3.41
443
446
3.134262
GTGGATACCAAGGGTAGAAGGAC
59.866
52.174
1.24
0.00
41.83
3.85
490
493
2.543037
TGACCTGGCTGGATACACTA
57.457
50.000
18.12
0.00
46.17
2.74
550
553
2.567169
CCTGACACTATCAACTGTGGGA
59.433
50.000
0.00
0.00
36.69
4.37
555
561
2.303022
CACTATCAACTGTGGGAGGTGT
59.697
50.000
0.00
0.00
40.70
4.16
602
609
4.516321
GGCATGCAAGAAAAGGAAAACATT
59.484
37.500
21.36
0.00
0.00
2.71
649
785
3.235195
CGTAGAGGAAAGACAAGTCGTG
58.765
50.000
0.00
0.00
34.09
4.35
665
801
1.821061
CGTGGAGGGAGCAGAAGTGT
61.821
60.000
0.00
0.00
0.00
3.55
670
806
2.167487
GGAGGGAGCAGAAGTGTTAGAG
59.833
54.545
0.00
0.00
0.00
2.43
671
807
2.167487
GAGGGAGCAGAAGTGTTAGAGG
59.833
54.545
0.00
0.00
0.00
3.69
672
808
1.903183
GGGAGCAGAAGTGTTAGAGGT
59.097
52.381
0.00
0.00
0.00
3.85
673
809
2.354203
GGGAGCAGAAGTGTTAGAGGTG
60.354
54.545
0.00
0.00
0.00
4.00
674
810
2.300437
GGAGCAGAAGTGTTAGAGGTGT
59.700
50.000
0.00
0.00
0.00
4.16
675
811
3.244249
GGAGCAGAAGTGTTAGAGGTGTT
60.244
47.826
0.00
0.00
0.00
3.32
764
978
1.192428
GGTGGTGGTCGTAGAGGAAT
58.808
55.000
0.00
0.00
36.95
3.01
789
1003
1.157513
TGCTAGAGGTGGTGGTGGA
59.842
57.895
0.00
0.00
0.00
4.02
848
1071
6.139048
TCGTAGACGAATGGTTGATAATGA
57.861
37.500
1.51
0.00
46.30
2.57
869
1092
1.621992
TCGGCCTTTGGTTATTTGCA
58.378
45.000
0.00
0.00
0.00
4.08
988
1213
5.960113
TGTGTCTTGTGCTAACAATTGTTT
58.040
33.333
27.66
12.78
45.12
2.83
1013
1238
1.284491
TGTAGGCATGGCTTCATCCAA
59.716
47.619
28.30
4.07
39.96
3.53
1072
1297
1.945354
GCCGAAGACGTGGATGGAGA
61.945
60.000
0.00
0.00
37.88
3.71
1076
1301
2.422479
CGAAGACGTGGATGGAGACTAA
59.578
50.000
0.00
0.00
34.56
2.24
1095
1320
4.846940
ACTAAGTTGGACAAGGAGAAGGAT
59.153
41.667
0.00
0.00
0.00
3.24
1150
1375
0.459489
TGTTTGCAAGGTGAAGGTGC
59.541
50.000
0.00
0.00
38.78
5.01
1206
1431
4.901250
AGAAGGTTTTTCATGTGTCCCAAT
59.099
37.500
0.00
0.00
0.00
3.16
1222
1447
4.036734
GTCCCAATTATGCACATGATCGTT
59.963
41.667
0.00
0.00
0.00
3.85
1253
1478
3.958798
ACTAACGCATATGACCTACCACT
59.041
43.478
6.97
0.00
0.00
4.00
1378
1604
3.381590
TCACTTGGATAGATCACGAGGTG
59.618
47.826
0.00
1.06
34.45
4.00
1451
1677
1.347707
TGTTCGAGGAGTCCTTTGCAT
59.652
47.619
14.41
0.00
31.76
3.96
1480
1706
2.490217
CGGGAGCGTCGTGAGAAT
59.510
61.111
0.00
0.00
45.01
2.40
1521
1747
0.250295
CGTGAGGAAAAGAGGGCACA
60.250
55.000
0.00
0.00
0.00
4.57
1541
1767
2.231478
CACAAAGAGAAGGAGGCTCGTA
59.769
50.000
10.52
0.00
37.46
3.43
1547
1773
4.027437
AGAGAAGGAGGCTCGTAAAGAAT
58.973
43.478
10.52
0.00
37.46
2.40
1641
1867
2.648059
GCCCCGTACTACTCAGTAGAA
58.352
52.381
19.25
0.00
38.29
2.10
1658
1884
4.898861
AGTAGAAAAATGGAAAAGGCACCA
59.101
37.500
0.00
0.00
40.57
4.17
1688
1914
5.462530
TGATGGACTTTCGAGACTTTGTA
57.537
39.130
0.00
0.00
0.00
2.41
1744
1970
9.643693
GTGGTCATGAAAAATTTATGTCATTCT
57.356
29.630
0.00
0.00
0.00
2.40
1760
1986
6.101997
TGTCATTCTAGACATCATGTGTGAC
58.898
40.000
0.00
0.00
43.18
3.67
1770
1996
4.686091
ACATCATGTGTGACGAACTTGTAG
59.314
41.667
0.00
0.00
40.28
2.74
1796
2032
7.468922
TTGAGACTATTTGAGATTATGTGCG
57.531
36.000
0.00
0.00
0.00
5.34
1837
2077
7.768240
TCGAGACTAGTATGCTTTGTTCATAA
58.232
34.615
0.00
0.00
0.00
1.90
1841
2081
9.890629
AGACTAGTATGCTTTGTTCATAATTGA
57.109
29.630
0.00
0.00
0.00
2.57
1849
2089
8.883954
TGCTTTGTTCATAATTGAATGTTTCA
57.116
26.923
0.00
0.00
43.49
2.69
1872
2138
9.724839
TTCAACTAGTATGCTTTGTTTAACAAC
57.275
29.630
10.28
0.89
37.90
3.32
1920
2186
6.944557
AAAATTAACAAGTTGCTATTCGGC
57.055
33.333
1.81
0.00
0.00
5.54
1921
2187
5.637006
AATTAACAAGTTGCTATTCGGCA
57.363
34.783
1.81
0.00
40.74
5.69
1922
2188
2.989422
AACAAGTTGCTATTCGGCAC
57.011
45.000
1.81
0.00
42.27
5.01
1923
2189
1.890876
ACAAGTTGCTATTCGGCACA
58.109
45.000
1.81
0.00
42.27
4.57
1924
2190
1.535462
ACAAGTTGCTATTCGGCACAC
59.465
47.619
1.81
0.00
42.27
3.82
1936
2202
2.267642
GCACACCCAGACGCCATA
59.732
61.111
0.00
0.00
0.00
2.74
1950
2216
3.127099
CCATAGACCCTGGCGTCTA
57.873
57.895
20.21
20.21
46.59
2.59
1970
2236
1.292242
AGGTCCCTATCCAGAGAGCAA
59.708
52.381
0.00
0.00
0.00
3.91
1975
2241
4.819088
GTCCCTATCCAGAGAGCAATTTTC
59.181
45.833
0.00
0.00
0.00
2.29
1976
2242
4.140536
CCCTATCCAGAGAGCAATTTTCC
58.859
47.826
0.00
0.00
0.00
3.13
1977
2243
4.385643
CCCTATCCAGAGAGCAATTTTCCA
60.386
45.833
0.00
0.00
0.00
3.53
1978
2244
5.195940
CCTATCCAGAGAGCAATTTTCCAA
58.804
41.667
0.00
0.00
0.00
3.53
1983
2249
3.985925
CAGAGAGCAATTTTCCAAGTTGC
59.014
43.478
8.27
8.27
46.37
4.17
2007
2274
3.434319
GCACACCCAGACGCCATG
61.434
66.667
0.00
0.00
0.00
3.66
2008
2275
2.032528
CACACCCAGACGCCATGT
59.967
61.111
0.00
0.00
0.00
3.21
2009
2276
1.600636
CACACCCAGACGCCATGTT
60.601
57.895
0.00
0.00
0.00
2.71
2024
2291
4.021925
GTTCCCTGGCGTCTGGCT
62.022
66.667
7.54
0.00
42.94
4.75
2025
2292
2.284331
TTCCCTGGCGTCTGGCTA
60.284
61.111
7.54
0.00
42.94
3.93
2030
2297
2.460330
CTGGCGTCTGGCTAGTTTG
58.540
57.895
0.00
0.00
44.55
2.93
2031
2298
1.003839
TGGCGTCTGGCTAGTTTGG
60.004
57.895
0.00
0.00
42.94
3.28
2032
2299
1.003718
GGCGTCTGGCTAGTTTGGT
60.004
57.895
0.00
0.00
42.94
3.67
2033
2300
1.019805
GGCGTCTGGCTAGTTTGGTC
61.020
60.000
0.00
0.00
42.94
4.02
2034
2301
0.320421
GCGTCTGGCTAGTTTGGTCA
60.320
55.000
0.00
0.00
39.11
4.02
2035
2302
1.429463
CGTCTGGCTAGTTTGGTCAC
58.571
55.000
0.00
0.00
0.00
3.67
2036
2303
1.429463
GTCTGGCTAGTTTGGTCACG
58.571
55.000
0.00
0.00
0.00
4.35
2037
2304
0.320421
TCTGGCTAGTTTGGTCACGC
60.320
55.000
0.00
0.00
0.00
5.34
2038
2305
0.602638
CTGGCTAGTTTGGTCACGCA
60.603
55.000
0.00
0.00
0.00
5.24
2039
2306
0.602638
TGGCTAGTTTGGTCACGCAG
60.603
55.000
0.00
0.00
0.00
5.18
2040
2307
1.298859
GGCTAGTTTGGTCACGCAGG
61.299
60.000
0.00
0.00
0.00
4.85
2041
2308
0.320421
GCTAGTTTGGTCACGCAGGA
60.320
55.000
0.00
0.00
0.00
3.86
2042
2309
1.876416
GCTAGTTTGGTCACGCAGGAA
60.876
52.381
0.00
0.00
0.00
3.36
2043
2310
2.069273
CTAGTTTGGTCACGCAGGAAG
58.931
52.381
0.00
0.00
0.00
3.46
2044
2311
1.166531
AGTTTGGTCACGCAGGAAGC
61.167
55.000
0.00
0.00
40.87
3.86
2045
2312
1.896660
TTTGGTCACGCAGGAAGCC
60.897
57.895
0.00
0.00
41.38
4.35
2046
2313
2.616797
TTTGGTCACGCAGGAAGCCA
62.617
55.000
0.00
0.00
41.38
4.75
2047
2314
2.743928
GGTCACGCAGGAAGCCAG
60.744
66.667
0.00
0.00
41.38
4.85
2048
2315
2.343758
GTCACGCAGGAAGCCAGA
59.656
61.111
0.00
0.00
41.38
3.86
2049
2316
2.029844
GTCACGCAGGAAGCCAGAC
61.030
63.158
0.00
0.00
41.38
3.51
2050
2317
2.031012
CACGCAGGAAGCCAGACA
59.969
61.111
0.00
0.00
41.38
3.41
2051
2318
2.031163
ACGCAGGAAGCCAGACAC
59.969
61.111
0.00
0.00
41.38
3.67
2052
2319
2.031012
CGCAGGAAGCCAGACACA
59.969
61.111
0.00
0.00
41.38
3.72
2053
2320
1.376424
CGCAGGAAGCCAGACACAT
60.376
57.895
0.00
0.00
41.38
3.21
2054
2321
1.642037
CGCAGGAAGCCAGACACATG
61.642
60.000
0.00
0.00
41.38
3.21
2055
2322
0.607489
GCAGGAAGCCAGACACATGT
60.607
55.000
0.00
0.00
37.23
3.21
2056
2323
1.446907
CAGGAAGCCAGACACATGTC
58.553
55.000
3.72
3.72
45.08
3.06
2065
2332
2.785868
GACACATGTCTGATGGCCC
58.214
57.895
0.00
0.00
41.65
5.80
2066
2333
1.078214
ACACATGTCTGATGGCCCG
60.078
57.895
0.00
0.00
0.00
6.13
2067
2334
2.124570
ACATGTCTGATGGCCCGC
60.125
61.111
0.00
0.00
0.00
6.13
2068
2335
3.274586
CATGTCTGATGGCCCGCG
61.275
66.667
0.00
0.00
0.00
6.46
2086
2353
3.691342
CCGACCAGACGCCAAGGA
61.691
66.667
0.00
0.00
0.00
3.36
2087
2354
2.432628
CGACCAGACGCCAAGGAC
60.433
66.667
0.00
0.00
0.00
3.85
2088
2355
2.047179
GACCAGACGCCAAGGACC
60.047
66.667
0.00
0.00
0.00
4.46
2089
2356
2.847234
ACCAGACGCCAAGGACCA
60.847
61.111
0.00
0.00
0.00
4.02
2090
2357
2.185310
GACCAGACGCCAAGGACCAT
62.185
60.000
0.00
0.00
0.00
3.55
2091
2358
1.746615
CCAGACGCCAAGGACCATG
60.747
63.158
0.00
0.00
0.00
3.66
2092
2359
1.746615
CAGACGCCAAGGACCATGG
60.747
63.158
11.19
11.19
41.08
3.66
2097
2364
4.095590
CCAAGGACCATGGCGTTT
57.904
55.556
13.04
0.00
0.00
3.60
2098
2365
1.586028
CCAAGGACCATGGCGTTTG
59.414
57.895
13.04
13.10
0.00
2.93
2099
2366
1.586028
CAAGGACCATGGCGTTTGG
59.414
57.895
13.04
0.00
40.26
3.28
2100
2367
2.275380
AAGGACCATGGCGTTTGGC
61.275
57.895
13.04
0.00
37.81
4.52
2101
2368
2.676471
GGACCATGGCGTTTGGCT
60.676
61.111
13.04
0.00
42.94
4.75
2102
2369
1.377987
GGACCATGGCGTTTGGCTA
60.378
57.895
13.04
0.00
42.94
3.93
2103
2370
1.654023
GGACCATGGCGTTTGGCTAC
61.654
60.000
13.04
0.00
42.94
3.58
2104
2371
0.676782
GACCATGGCGTTTGGCTACT
60.677
55.000
13.04
0.00
42.94
2.57
2105
2372
0.251165
ACCATGGCGTTTGGCTACTT
60.251
50.000
13.04
0.00
42.94
2.24
2106
2373
0.171007
CCATGGCGTTTGGCTACTTG
59.829
55.000
0.00
0.00
42.94
3.16
2107
2374
0.171007
CATGGCGTTTGGCTACTTGG
59.829
55.000
0.00
0.00
42.94
3.61
2108
2375
0.965363
ATGGCGTTTGGCTACTTGGG
60.965
55.000
0.00
0.00
42.94
4.12
2109
2376
2.566529
GCGTTTGGCTACTTGGGC
59.433
61.111
0.00
0.00
39.11
5.36
2110
2377
2.265182
GCGTTTGGCTACTTGGGCA
61.265
57.895
0.00
0.00
39.99
5.36
2113
2380
4.073052
TTGGCTACTTGGGCAACG
57.927
55.556
0.00
0.00
44.72
4.10
2114
2381
1.149627
TTGGCTACTTGGGCAACGT
59.850
52.632
0.00
0.00
44.72
3.99
2115
2382
0.887387
TTGGCTACTTGGGCAACGTC
60.887
55.000
0.00
0.00
44.72
4.34
2116
2383
1.302192
GGCTACTTGGGCAACGTCA
60.302
57.895
0.00
0.00
37.60
4.35
2117
2384
0.887387
GGCTACTTGGGCAACGTCAA
60.887
55.000
0.00
0.00
37.60
3.18
2118
2385
0.237498
GCTACTTGGGCAACGTCAAC
59.763
55.000
0.00
0.00
37.60
3.18
2119
2386
0.872388
CTACTTGGGCAACGTCAACC
59.128
55.000
0.00
0.00
37.60
3.77
2120
2387
0.180642
TACTTGGGCAACGTCAACCA
59.819
50.000
0.00
0.00
37.60
3.67
2121
2388
1.101049
ACTTGGGCAACGTCAACCAG
61.101
55.000
5.40
3.81
33.96
4.00
2122
2389
0.817634
CTTGGGCAACGTCAACCAGA
60.818
55.000
5.40
0.00
33.96
3.86
2123
2390
1.098712
TTGGGCAACGTCAACCAGAC
61.099
55.000
5.40
0.00
44.02
3.51
2130
2397
2.358737
GTCAACCAGACGCCAGGG
60.359
66.667
0.00
0.00
37.53
4.45
2131
2398
2.525629
TCAACCAGACGCCAGGGA
60.526
61.111
0.00
0.00
0.00
4.20
2132
2399
2.358737
CAACCAGACGCCAGGGAC
60.359
66.667
0.00
0.00
0.00
4.46
2133
2400
3.637273
AACCAGACGCCAGGGACC
61.637
66.667
0.00
0.00
0.00
4.46
2136
2403
4.742201
CAGACGCCAGGGACCGTG
62.742
72.222
7.23
7.23
37.87
4.94
2143
2410
4.742201
CAGGGACCGTGGCGTCTG
62.742
72.222
6.27
0.00
33.07
3.51
2149
2416
4.619227
CCGTGGCGTCTGGGTGTT
62.619
66.667
0.00
0.00
0.00
3.32
2150
2417
3.345808
CGTGGCGTCTGGGTGTTG
61.346
66.667
0.00
0.00
0.00
3.33
2151
2418
3.660111
GTGGCGTCTGGGTGTTGC
61.660
66.667
0.00
0.00
0.00
4.17
2152
2419
4.182433
TGGCGTCTGGGTGTTGCA
62.182
61.111
0.00
0.00
0.00
4.08
2153
2420
3.660111
GGCGTCTGGGTGTTGCAC
61.660
66.667
0.00
0.00
0.00
4.57
2154
2421
2.899838
GCGTCTGGGTGTTGCACA
60.900
61.111
1.61
0.00
35.86
4.57
2160
2427
1.674359
CTGGGTGTTGCACAGTTACA
58.326
50.000
1.61
0.00
43.50
2.41
2161
2428
2.229792
CTGGGTGTTGCACAGTTACAT
58.770
47.619
1.61
0.00
43.50
2.29
2162
2429
2.622942
CTGGGTGTTGCACAGTTACATT
59.377
45.455
1.61
0.00
43.50
2.71
2163
2430
3.027412
TGGGTGTTGCACAGTTACATTT
58.973
40.909
1.61
0.00
35.86
2.32
2164
2431
3.067461
TGGGTGTTGCACAGTTACATTTC
59.933
43.478
1.61
0.00
35.86
2.17
2165
2432
3.296628
GGTGTTGCACAGTTACATTTCG
58.703
45.455
1.61
0.00
35.86
3.46
2166
2433
2.719046
GTGTTGCACAGTTACATTTCGC
59.281
45.455
0.00
0.00
34.08
4.70
2167
2434
2.616376
TGTTGCACAGTTACATTTCGCT
59.384
40.909
0.00
0.00
0.00
4.93
2168
2435
3.066064
TGTTGCACAGTTACATTTCGCTT
59.934
39.130
0.00
0.00
0.00
4.68
2169
2436
3.536158
TGCACAGTTACATTTCGCTTC
57.464
42.857
0.00
0.00
0.00
3.86
2170
2437
3.138304
TGCACAGTTACATTTCGCTTCT
58.862
40.909
0.00
0.00
0.00
2.85
2171
2438
3.058983
TGCACAGTTACATTTCGCTTCTG
60.059
43.478
0.00
0.00
0.00
3.02
2172
2439
3.058914
GCACAGTTACATTTCGCTTCTGT
60.059
43.478
0.00
0.00
35.49
3.41
2173
2440
4.554723
GCACAGTTACATTTCGCTTCTGTT
60.555
41.667
0.00
0.00
33.35
3.16
2174
2441
4.905866
CACAGTTACATTTCGCTTCTGTTG
59.094
41.667
0.00
0.00
33.35
3.33
2175
2442
4.814234
ACAGTTACATTTCGCTTCTGTTGA
59.186
37.500
0.00
0.00
31.95
3.18
2176
2443
5.470098
ACAGTTACATTTCGCTTCTGTTGAT
59.530
36.000
0.00
0.00
31.95
2.57
2177
2444
6.017109
ACAGTTACATTTCGCTTCTGTTGATT
60.017
34.615
0.00
0.00
31.95
2.57
2178
2445
6.857964
CAGTTACATTTCGCTTCTGTTGATTT
59.142
34.615
0.00
0.00
0.00
2.17
2179
2446
7.379529
CAGTTACATTTCGCTTCTGTTGATTTT
59.620
33.333
0.00
0.00
0.00
1.82
2180
2447
7.379529
AGTTACATTTCGCTTCTGTTGATTTTG
59.620
33.333
0.00
0.00
0.00
2.44
2181
2448
4.984161
ACATTTCGCTTCTGTTGATTTTGG
59.016
37.500
0.00
0.00
0.00
3.28
2182
2449
3.641437
TTCGCTTCTGTTGATTTTGGG
57.359
42.857
0.00
0.00
0.00
4.12
2183
2450
1.885887
TCGCTTCTGTTGATTTTGGGG
59.114
47.619
0.00
0.00
0.00
4.96
2184
2451
1.067635
CGCTTCTGTTGATTTTGGGGG
60.068
52.381
0.00
0.00
0.00
5.40
2207
2474
4.672251
GGTACCAGACGCTAGGGA
57.328
61.111
14.59
0.00
0.00
4.20
2208
2475
2.113767
GGTACCAGACGCTAGGGAC
58.886
63.158
14.59
7.54
38.06
4.46
2209
2476
2.113767
GTACCAGACGCTAGGGACC
58.886
63.158
14.59
4.92
32.28
4.46
2210
2477
1.076485
TACCAGACGCTAGGGACCC
60.076
63.158
14.59
0.59
0.00
4.46
2211
2478
1.578215
TACCAGACGCTAGGGACCCT
61.578
60.000
19.48
19.48
37.71
4.34
2212
2479
2.427245
CCAGACGCTAGGGACCCTG
61.427
68.421
24.42
13.88
34.61
4.45
2213
2480
2.042843
AGACGCTAGGGACCCTGG
60.043
66.667
24.42
21.88
34.61
4.45
2218
2485
3.400188
CTAGGGACCCTGGCGTTT
58.600
61.111
24.42
0.00
34.61
3.60
2219
2486
1.078426
CTAGGGACCCTGGCGTTTG
60.078
63.158
24.42
0.73
34.61
2.93
2220
2487
2.536997
CTAGGGACCCTGGCGTTTGG
62.537
65.000
24.42
0.00
34.61
3.28
2221
2488
3.961414
GGGACCCTGGCGTTTGGA
61.961
66.667
2.09
0.00
0.00
3.53
2222
2489
2.355115
GGACCCTGGCGTTTGGAT
59.645
61.111
0.00
0.00
0.00
3.41
2223
2490
1.605453
GGACCCTGGCGTTTGGATA
59.395
57.895
0.00
0.00
0.00
2.59
2224
2491
0.182775
GGACCCTGGCGTTTGGATAT
59.817
55.000
0.00
0.00
0.00
1.63
2225
2492
1.409661
GGACCCTGGCGTTTGGATATT
60.410
52.381
0.00
0.00
0.00
1.28
2226
2493
2.375146
GACCCTGGCGTTTGGATATTT
58.625
47.619
0.00
0.00
0.00
1.40
2227
2494
2.099098
GACCCTGGCGTTTGGATATTTG
59.901
50.000
0.00
0.00
0.00
2.32
2228
2495
1.408702
CCCTGGCGTTTGGATATTTGG
59.591
52.381
0.00
0.00
0.00
3.28
2229
2496
1.408702
CCTGGCGTTTGGATATTTGGG
59.591
52.381
0.00
0.00
0.00
4.12
2230
2497
0.820871
TGGCGTTTGGATATTTGGGC
59.179
50.000
0.00
0.00
0.00
5.36
2231
2498
0.104120
GGCGTTTGGATATTTGGGCC
59.896
55.000
0.00
0.00
0.00
5.80
2232
2499
0.820871
GCGTTTGGATATTTGGGCCA
59.179
50.000
0.00
0.00
0.00
5.36
2233
2500
1.412343
GCGTTTGGATATTTGGGCCAT
59.588
47.619
7.26
0.00
0.00
4.40
2234
2501
2.802774
GCGTTTGGATATTTGGGCCATG
60.803
50.000
7.26
0.00
0.00
3.66
2235
2502
2.430332
CGTTTGGATATTTGGGCCATGT
59.570
45.455
7.26
0.94
0.00
3.21
2236
2503
3.490761
CGTTTGGATATTTGGGCCATGTC
60.491
47.826
7.26
0.29
0.00
3.06
2237
2504
3.395054
TTGGATATTTGGGCCATGTCA
57.605
42.857
7.26
0.00
0.00
3.58
2238
2505
3.395054
TGGATATTTGGGCCATGTCAA
57.605
42.857
7.26
0.00
0.00
3.18
2239
2506
3.030291
TGGATATTTGGGCCATGTCAAC
58.970
45.455
7.26
0.00
0.00
3.18
2240
2507
2.365293
GGATATTTGGGCCATGTCAACC
59.635
50.000
7.26
3.65
0.00
3.77
2241
2508
2.612285
TATTTGGGCCATGTCAACCA
57.388
45.000
7.26
0.00
0.00
3.67
2242
2509
1.269012
ATTTGGGCCATGTCAACCAG
58.731
50.000
7.26
0.00
33.96
4.00
2243
2510
0.187117
TTTGGGCCATGTCAACCAGA
59.813
50.000
7.26
0.00
33.96
3.86
2244
2511
0.409092
TTGGGCCATGTCAACCAGAT
59.591
50.000
7.26
0.00
33.96
2.90
2245
2512
0.323633
TGGGCCATGTCAACCAGATG
60.324
55.000
0.00
0.00
0.00
2.90
2246
2513
1.669999
GGGCCATGTCAACCAGATGC
61.670
60.000
4.39
0.00
0.00
3.91
2247
2514
1.669999
GGCCATGTCAACCAGATGCC
61.670
60.000
0.00
0.00
0.00
4.40
2248
2515
1.996786
GCCATGTCAACCAGATGCCG
61.997
60.000
0.00
0.00
0.00
5.69
2249
2516
0.392863
CCATGTCAACCAGATGCCGA
60.393
55.000
0.00
0.00
0.00
5.54
2250
2517
1.012086
CATGTCAACCAGATGCCGAG
58.988
55.000
0.00
0.00
0.00
4.63
2251
2518
0.107508
ATGTCAACCAGATGCCGAGG
60.108
55.000
0.00
0.00
0.00
4.63
2252
2519
1.191489
TGTCAACCAGATGCCGAGGA
61.191
55.000
0.00
0.00
0.00
3.71
2253
2520
0.741221
GTCAACCAGATGCCGAGGAC
60.741
60.000
0.00
0.00
0.00
3.85
2254
2521
1.450312
CAACCAGATGCCGAGGACC
60.450
63.158
0.00
0.00
0.00
4.46
2255
2522
2.670148
AACCAGATGCCGAGGACCC
61.670
63.158
0.00
0.00
0.00
4.46
2256
2523
2.765807
CCAGATGCCGAGGACCCT
60.766
66.667
0.00
0.00
0.00
4.34
2257
2524
2.503061
CAGATGCCGAGGACCCTG
59.497
66.667
0.00
0.00
0.00
4.45
2258
2525
2.765807
AGATGCCGAGGACCCTGG
60.766
66.667
0.00
0.00
0.00
4.45
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
24
25
3.147629
CAGCCATTCATCAATCTCTCCC
58.852
50.000
0.00
0.00
0.00
4.30
28
29
2.950309
ACTGCAGCCATTCATCAATCTC
59.050
45.455
15.27
0.00
0.00
2.75
31
33
4.018490
TGTAACTGCAGCCATTCATCAAT
58.982
39.130
15.27
0.00
0.00
2.57
127
129
0.603707
CCATCTCGTGTTGTGCCACT
60.604
55.000
0.00
0.00
33.07
4.00
144
146
3.257873
CAGCACCACCATATTGAAAACCA
59.742
43.478
0.00
0.00
0.00
3.67
210
213
5.513094
GCATGGCCAATGATACTTACTAGGA
60.513
44.000
10.96
0.00
38.72
2.94
296
299
2.306805
TCCACATGGAACTCTTGCATCT
59.693
45.455
0.00
0.00
39.89
2.90
376
379
2.180946
TGAGGGCCATGATACTCAGT
57.819
50.000
6.18
0.00
35.24
3.41
426
429
3.865571
AGTTGTCCTTCTACCCTTGGTA
58.134
45.455
0.00
0.00
37.09
3.25
443
446
4.286297
TCACCCATGAACCTCTTAGTTG
57.714
45.455
0.00
0.00
0.00
3.16
490
493
3.367292
CCGCTACCAAATTGTTTCATGCT
60.367
43.478
0.00
0.00
0.00
3.79
550
553
1.152756
GTTGCCCTTCACCACACCT
60.153
57.895
0.00
0.00
0.00
4.00
555
561
1.039068
CATTGTGTTGCCCTTCACCA
58.961
50.000
0.00
0.00
34.14
4.17
580
586
5.236911
TCAATGTTTTCCTTTTCTTGCATGC
59.763
36.000
11.82
11.82
0.00
4.06
602
609
0.258774
GCTAGGAATGCCCCCTTTCA
59.741
55.000
0.00
0.00
35.30
2.69
649
785
2.167487
CTCTAACACTTCTGCTCCCTCC
59.833
54.545
0.00
0.00
0.00
4.30
665
801
1.416243
ACGACCACCAACACCTCTAA
58.584
50.000
0.00
0.00
0.00
2.10
670
806
0.037605
CCTCTACGACCACCAACACC
60.038
60.000
0.00
0.00
0.00
4.16
671
807
0.963962
TCCTCTACGACCACCAACAC
59.036
55.000
0.00
0.00
0.00
3.32
672
808
1.616865
CTTCCTCTACGACCACCAACA
59.383
52.381
0.00
0.00
0.00
3.33
673
809
1.672145
GCTTCCTCTACGACCACCAAC
60.672
57.143
0.00
0.00
0.00
3.77
674
810
0.606604
GCTTCCTCTACGACCACCAA
59.393
55.000
0.00
0.00
0.00
3.67
675
811
0.541063
TGCTTCCTCTACGACCACCA
60.541
55.000
0.00
0.00
0.00
4.17
704
846
0.324614
TCTACCACCACCAGCACATG
59.675
55.000
0.00
0.00
0.00
3.21
706
848
2.057830
CTCTACCACCACCAGCACA
58.942
57.895
0.00
0.00
0.00
4.57
764
978
1.344438
CACCACCTCTAGCACTTGTGA
59.656
52.381
4.79
0.00
0.00
3.58
789
1003
2.370189
AGCACTTGTGCTTCCTCTAAGT
59.630
45.455
20.95
0.00
43.52
2.24
812
1035
1.549170
GTCTACGACCACCACATCCTT
59.451
52.381
0.00
0.00
0.00
3.36
816
1039
2.951269
TCGTCTACGACCACCACAT
58.049
52.632
0.14
0.00
44.22
3.21
817
1040
4.479303
TCGTCTACGACCACCACA
57.521
55.556
0.14
0.00
44.22
4.17
832
1055
4.466828
GCCGATTCATTATCAACCATTCG
58.533
43.478
0.00
0.00
32.45
3.34
848
1071
2.564947
TGCAAATAACCAAAGGCCGATT
59.435
40.909
0.00
0.00
0.00
3.34
952
1177
8.220755
AGCACAAGACACAAAAAGAGTAAATA
57.779
30.769
0.00
0.00
0.00
1.40
1013
1238
1.299976
GACGGCCTTGTCCTGGAAT
59.700
57.895
0.00
0.00
32.61
3.01
1072
1297
4.232091
TCCTTCTCCTTGTCCAACTTAGT
58.768
43.478
0.00
0.00
0.00
2.24
1076
1301
4.226168
CCTTATCCTTCTCCTTGTCCAACT
59.774
45.833
0.00
0.00
0.00
3.16
1095
1320
0.037590
GTGGTGTGGGCACATCCTTA
59.962
55.000
13.04
0.00
46.95
2.69
1150
1375
0.951040
GACTTCTTGCGGTCAGTGGG
60.951
60.000
0.00
0.00
33.19
4.61
1206
1431
3.123050
CCGAGAACGATCATGTGCATAA
58.877
45.455
0.00
0.00
42.66
1.90
1222
1447
0.818938
TATGCGTTAGTTGGCCGAGA
59.181
50.000
0.00
0.00
0.00
4.04
1378
1604
2.795329
TCCTCTTGGACATCTTTTGGC
58.205
47.619
0.00
0.00
37.46
4.52
1451
1677
3.089874
CTCCCGCTCCAATCCCCA
61.090
66.667
0.00
0.00
0.00
4.96
1480
1706
0.313987
TCTTGCGCTCGTTCTTCTCA
59.686
50.000
9.73
0.00
0.00
3.27
1511
1737
2.487986
CCTTCTCTTTGTGTGCCCTCTT
60.488
50.000
0.00
0.00
0.00
2.85
1521
1747
1.343069
ACGAGCCTCCTTCTCTTTGT
58.657
50.000
0.00
0.00
0.00
2.83
1641
1867
3.922171
TGTTGGTGCCTTTTCCATTTT
57.078
38.095
0.00
0.00
33.50
1.82
1658
1884
4.115516
CTCGAAAGTCCATCATCGATGTT
58.884
43.478
24.09
14.06
42.66
2.71
1688
1914
5.349817
GTCTCGAATGACAAGTTCATCACAT
59.650
40.000
0.22
0.00
44.86
3.21
1744
1970
4.783764
AGTTCGTCACACATGATGTCTA
57.216
40.909
0.00
0.00
40.64
2.59
1752
1978
5.113383
TCAAACTACAAGTTCGTCACACAT
58.887
37.500
0.00
0.00
37.47
3.21
1760
1986
8.294341
TCAAATAGTCTCAAACTACAAGTTCG
57.706
34.615
0.00
0.00
43.21
3.95
1770
1996
7.848051
CGCACATAATCTCAAATAGTCTCAAAC
59.152
37.037
0.00
0.00
0.00
2.93
1796
2032
6.952935
AGTCTCGAATGACAAACATAGTTC
57.047
37.500
7.47
0.00
38.38
3.01
1840
2080
9.463443
AAACAAAGCATACTAGTTGAAACATTC
57.537
29.630
0.00
0.00
0.00
2.67
1843
2083
9.724839
GTTAAACAAAGCATACTAGTTGAAACA
57.275
29.630
0.00
0.00
30.73
2.83
1844
2084
9.724839
TGTTAAACAAAGCATACTAGTTGAAAC
57.275
29.630
0.00
1.62
30.85
2.78
1846
2086
9.724839
GTTGTTAAACAAAGCATACTAGTTGAA
57.275
29.630
0.00
0.00
40.15
2.69
1847
2087
8.065407
CGTTGTTAAACAAAGCATACTAGTTGA
58.935
33.333
0.00
0.00
40.15
3.18
1848
2088
7.853929
ACGTTGTTAAACAAAGCATACTAGTTG
59.146
33.333
0.00
0.52
40.44
3.16
1849
2089
7.853929
CACGTTGTTAAACAAAGCATACTAGTT
59.146
33.333
0.00
0.00
40.44
2.24
1871
2137
4.783903
GCAACTTGTTGCACACGT
57.216
50.000
27.19
0.00
46.60
4.49
1899
2165
5.048364
TGTGCCGAATAGCAACTTGTTAATT
60.048
36.000
0.00
0.00
46.19
1.40
1908
2174
0.958382
TGGGTGTGCCGAATAGCAAC
60.958
55.000
0.00
0.00
46.19
4.17
1909
2175
0.676466
CTGGGTGTGCCGAATAGCAA
60.676
55.000
0.00
0.00
46.19
3.91
1910
2176
1.078497
CTGGGTGTGCCGAATAGCA
60.078
57.895
0.00
0.00
41.46
3.49
1911
2177
1.090052
GTCTGGGTGTGCCGAATAGC
61.090
60.000
0.00
0.00
34.97
2.97
1912
2178
0.806102
CGTCTGGGTGTGCCGAATAG
60.806
60.000
0.00
0.00
34.97
1.73
1913
2179
1.216977
CGTCTGGGTGTGCCGAATA
59.783
57.895
0.00
0.00
34.97
1.75
1914
2180
2.047274
CGTCTGGGTGTGCCGAAT
60.047
61.111
0.00
0.00
34.97
3.34
1915
2181
4.980805
GCGTCTGGGTGTGCCGAA
62.981
66.667
0.00
0.00
34.97
4.30
1919
2185
1.815421
CTATGGCGTCTGGGTGTGC
60.815
63.158
0.00
0.00
0.00
4.57
1920
2186
0.460284
GTCTATGGCGTCTGGGTGTG
60.460
60.000
0.00
0.00
0.00
3.82
1921
2187
1.614241
GGTCTATGGCGTCTGGGTGT
61.614
60.000
0.00
0.00
0.00
4.16
1922
2188
1.144057
GGTCTATGGCGTCTGGGTG
59.856
63.158
0.00
0.00
0.00
4.61
1923
2189
2.064581
GGGTCTATGGCGTCTGGGT
61.065
63.158
0.00
0.00
0.00
4.51
1924
2190
1.762460
AGGGTCTATGGCGTCTGGG
60.762
63.158
0.00
0.00
0.00
4.45
1950
2216
0.937441
TGCTCTCTGGATAGGGACCT
59.063
55.000
0.00
0.00
0.00
3.85
1970
2236
2.223845
GCGCAATTGCAACTTGGAAAAT
59.776
40.909
28.77
0.00
42.21
1.82
1975
2241
4.340076
TGCGCAATTGCAACTTGG
57.660
50.000
28.77
13.15
43.02
3.61
1983
2249
1.081242
GTCTGGGTGTGCGCAATTG
60.081
57.895
14.00
0.00
37.11
2.32
1984
2250
2.616330
CGTCTGGGTGTGCGCAATT
61.616
57.895
14.00
0.00
37.11
2.32
2006
2273
4.329545
GCCAGACGCCAGGGAACA
62.330
66.667
0.00
0.00
0.00
3.18
2007
2274
2.579684
CTAGCCAGACGCCAGGGAAC
62.580
65.000
0.00
0.00
38.78
3.62
2008
2275
2.284331
TAGCCAGACGCCAGGGAA
60.284
61.111
0.00
0.00
38.78
3.97
2009
2276
2.759973
CTAGCCAGACGCCAGGGA
60.760
66.667
0.00
0.00
38.78
4.20
2024
2291
1.876416
GCTTCCTGCGTGACCAAACTA
60.876
52.381
0.00
0.00
0.00
2.24
2025
2292
1.166531
GCTTCCTGCGTGACCAAACT
61.167
55.000
0.00
0.00
0.00
2.66
2026
2293
1.282875
GCTTCCTGCGTGACCAAAC
59.717
57.895
0.00
0.00
0.00
2.93
2027
2294
1.896660
GGCTTCCTGCGTGACCAAA
60.897
57.895
0.00
0.00
44.05
3.28
2028
2295
2.281484
GGCTTCCTGCGTGACCAA
60.281
61.111
0.00
0.00
44.05
3.67
2029
2296
3.535629
CTGGCTTCCTGCGTGACCA
62.536
63.158
0.00
0.00
44.05
4.02
2030
2297
2.743928
CTGGCTTCCTGCGTGACC
60.744
66.667
0.00
0.00
44.05
4.02
2031
2298
2.029844
GTCTGGCTTCCTGCGTGAC
61.030
63.158
0.00
0.00
44.05
3.67
2032
2299
2.343758
GTCTGGCTTCCTGCGTGA
59.656
61.111
0.00
0.00
44.05
4.35
2033
2300
2.031012
TGTCTGGCTTCCTGCGTG
59.969
61.111
0.00
0.00
44.05
5.34
2034
2301
2.031163
GTGTCTGGCTTCCTGCGT
59.969
61.111
0.00
0.00
44.05
5.24
2035
2302
1.376424
ATGTGTCTGGCTTCCTGCG
60.376
57.895
0.00
0.00
44.05
5.18
2036
2303
0.607489
ACATGTGTCTGGCTTCCTGC
60.607
55.000
0.00
0.00
41.94
4.85
2037
2304
1.446907
GACATGTGTCTGGCTTCCTG
58.553
55.000
1.15
0.00
41.65
3.86
2038
2305
3.944476
GACATGTGTCTGGCTTCCT
57.056
52.632
1.15
0.00
41.65
3.36
2047
2314
1.091771
CGGGCCATCAGACATGTGTC
61.092
60.000
1.15
5.01
45.08
3.67
2048
2315
1.078214
CGGGCCATCAGACATGTGT
60.078
57.895
1.15
0.00
0.00
3.72
2049
2316
2.475466
GCGGGCCATCAGACATGTG
61.475
63.158
1.15
0.00
0.00
3.21
2050
2317
2.124570
GCGGGCCATCAGACATGT
60.125
61.111
4.39
0.00
0.00
3.21
2051
2318
3.274586
CGCGGGCCATCAGACATG
61.275
66.667
4.39
0.00
0.00
3.21
2069
2336
3.691342
TCCTTGGCGTCTGGTCGG
61.691
66.667
0.00
0.00
0.00
4.79
2070
2337
2.432628
GTCCTTGGCGTCTGGTCG
60.433
66.667
0.00
0.00
0.00
4.79
2071
2338
2.047179
GGTCCTTGGCGTCTGGTC
60.047
66.667
0.00
0.00
0.00
4.02
2072
2339
2.224159
ATGGTCCTTGGCGTCTGGT
61.224
57.895
0.00
0.00
0.00
4.00
2073
2340
1.746615
CATGGTCCTTGGCGTCTGG
60.747
63.158
0.00
0.00
0.00
3.86
2074
2341
1.746615
CCATGGTCCTTGGCGTCTG
60.747
63.158
10.74
0.00
0.00
3.51
2075
2342
2.671070
CCATGGTCCTTGGCGTCT
59.329
61.111
10.74
0.00
0.00
4.18
2080
2347
1.586028
CAAACGCCATGGTCCTTGG
59.414
57.895
17.78
17.78
37.31
3.61
2081
2348
1.586028
CCAAACGCCATGGTCCTTG
59.414
57.895
14.67
13.23
33.08
3.61
2082
2349
2.275380
GCCAAACGCCATGGTCCTT
61.275
57.895
14.67
0.89
40.23
3.36
2083
2350
1.847798
TAGCCAAACGCCATGGTCCT
61.848
55.000
14.67
2.32
40.23
3.85
2084
2351
1.377987
TAGCCAAACGCCATGGTCC
60.378
57.895
14.67
0.00
40.23
4.46
2085
2352
0.676782
AGTAGCCAAACGCCATGGTC
60.677
55.000
14.67
4.79
40.23
4.02
2086
2353
0.251165
AAGTAGCCAAACGCCATGGT
60.251
50.000
14.67
0.00
40.23
3.55
2087
2354
0.171007
CAAGTAGCCAAACGCCATGG
59.829
55.000
7.63
7.63
41.08
3.66
2088
2355
0.171007
CCAAGTAGCCAAACGCCATG
59.829
55.000
0.00
0.00
38.78
3.66
2089
2356
0.965363
CCCAAGTAGCCAAACGCCAT
60.965
55.000
0.00
0.00
38.78
4.40
2090
2357
1.602323
CCCAAGTAGCCAAACGCCA
60.602
57.895
0.00
0.00
38.78
5.69
2091
2358
2.989881
GCCCAAGTAGCCAAACGCC
61.990
63.158
0.00
0.00
38.78
5.68
2092
2359
1.801309
TTGCCCAAGTAGCCAAACGC
61.801
55.000
0.00
0.00
37.98
4.84
2093
2360
0.039527
GTTGCCCAAGTAGCCAAACG
60.040
55.000
0.00
0.00
0.00
3.60
2094
2361
0.039527
CGTTGCCCAAGTAGCCAAAC
60.040
55.000
0.00
0.00
0.00
2.93
2095
2362
0.466555
ACGTTGCCCAAGTAGCCAAA
60.467
50.000
0.00
0.00
0.00
3.28
2096
2363
0.887387
GACGTTGCCCAAGTAGCCAA
60.887
55.000
0.00
0.00
0.00
4.52
2097
2364
1.302192
GACGTTGCCCAAGTAGCCA
60.302
57.895
0.00
0.00
0.00
4.75
2098
2365
0.887387
TTGACGTTGCCCAAGTAGCC
60.887
55.000
0.00
0.00
0.00
3.93
2099
2366
0.237498
GTTGACGTTGCCCAAGTAGC
59.763
55.000
0.00
0.00
0.00
3.58
2100
2367
0.872388
GGTTGACGTTGCCCAAGTAG
59.128
55.000
0.00
0.00
0.00
2.57
2101
2368
0.180642
TGGTTGACGTTGCCCAAGTA
59.819
50.000
0.00
0.00
0.00
2.24
2102
2369
1.077357
TGGTTGACGTTGCCCAAGT
60.077
52.632
0.00
0.00
0.00
3.16
2103
2370
0.817634
TCTGGTTGACGTTGCCCAAG
60.818
55.000
0.00
0.00
0.00
3.61
2104
2371
1.098712
GTCTGGTTGACGTTGCCCAA
61.099
55.000
0.00
0.00
35.81
4.12
2105
2372
1.525077
GTCTGGTTGACGTTGCCCA
60.525
57.895
0.00
0.00
35.81
5.36
2106
2373
3.340789
GTCTGGTTGACGTTGCCC
58.659
61.111
0.00
0.00
35.81
5.36
2113
2380
2.358737
CCCTGGCGTCTGGTTGAC
60.359
66.667
12.29
0.00
42.06
3.18
2114
2381
2.525629
TCCCTGGCGTCTGGTTGA
60.526
61.111
12.29
0.00
0.00
3.18
2115
2382
2.358737
GTCCCTGGCGTCTGGTTG
60.359
66.667
12.29
0.00
0.00
3.77
2116
2383
3.637273
GGTCCCTGGCGTCTGGTT
61.637
66.667
12.29
0.00
0.00
3.67
2119
2386
4.742201
CACGGTCCCTGGCGTCTG
62.742
72.222
0.00
0.00
0.00
3.51
2126
2393
4.742201
CAGACGCCACGGTCCCTG
62.742
72.222
0.00
0.00
37.66
4.45
2132
2399
4.619227
AACACCCAGACGCCACGG
62.619
66.667
0.00
0.00
0.00
4.94
2133
2400
3.345808
CAACACCCAGACGCCACG
61.346
66.667
0.00
0.00
0.00
4.94
2134
2401
3.660111
GCAACACCCAGACGCCAC
61.660
66.667
0.00
0.00
0.00
5.01
2135
2402
4.182433
TGCAACACCCAGACGCCA
62.182
61.111
0.00
0.00
0.00
5.69
2136
2403
3.660111
GTGCAACACCCAGACGCC
61.660
66.667
0.00
0.00
36.32
5.68
2137
2404
2.896801
CTGTGCAACACCCAGACGC
61.897
63.158
0.00
0.00
45.67
5.19
2138
2405
1.095228
AACTGTGCAACACCCAGACG
61.095
55.000
8.15
0.00
45.67
4.18
2139
2406
1.602377
GTAACTGTGCAACACCCAGAC
59.398
52.381
8.15
0.00
45.67
3.51
2140
2407
1.210722
TGTAACTGTGCAACACCCAGA
59.789
47.619
8.15
0.00
45.67
3.86
2141
2408
1.674359
TGTAACTGTGCAACACCCAG
58.326
50.000
0.00
0.00
45.67
4.45
2142
2409
2.356665
ATGTAACTGTGCAACACCCA
57.643
45.000
0.00
0.00
45.67
4.51
2143
2410
3.638484
GAAATGTAACTGTGCAACACCC
58.362
45.455
0.00
0.00
45.67
4.61
2144
2411
3.296628
CGAAATGTAACTGTGCAACACC
58.703
45.455
0.00
0.00
45.67
4.16
2145
2412
2.719046
GCGAAATGTAACTGTGCAACAC
59.281
45.455
0.00
0.00
45.67
3.32
2147
2414
3.268013
AGCGAAATGTAACTGTGCAAC
57.732
42.857
0.00
0.00
37.35
4.17
2148
2415
3.563808
AGAAGCGAAATGTAACTGTGCAA
59.436
39.130
0.00
0.00
0.00
4.08
2149
2416
3.058983
CAGAAGCGAAATGTAACTGTGCA
60.059
43.478
0.00
0.00
0.00
4.57
2150
2417
3.058914
ACAGAAGCGAAATGTAACTGTGC
60.059
43.478
0.00
0.00
0.00
4.57
2151
2418
4.732285
ACAGAAGCGAAATGTAACTGTG
57.268
40.909
0.00
0.00
0.00
3.66
2152
2419
4.814234
TCAACAGAAGCGAAATGTAACTGT
59.186
37.500
0.00
0.00
0.00
3.55
2153
2420
5.342806
TCAACAGAAGCGAAATGTAACTG
57.657
39.130
0.00
0.00
0.00
3.16
2154
2421
6.560253
AATCAACAGAAGCGAAATGTAACT
57.440
33.333
0.00
0.00
0.00
2.24
2155
2422
7.358352
CCAAAATCAACAGAAGCGAAATGTAAC
60.358
37.037
0.00
0.00
0.00
2.50
2156
2423
6.640499
CCAAAATCAACAGAAGCGAAATGTAA
59.360
34.615
0.00
0.00
0.00
2.41
2157
2424
6.148948
CCAAAATCAACAGAAGCGAAATGTA
58.851
36.000
0.00
0.00
0.00
2.29
2158
2425
4.984161
CCAAAATCAACAGAAGCGAAATGT
59.016
37.500
0.00
0.00
0.00
2.71
2159
2426
4.386652
CCCAAAATCAACAGAAGCGAAATG
59.613
41.667
0.00
0.00
0.00
2.32
2160
2427
4.559153
CCCAAAATCAACAGAAGCGAAAT
58.441
39.130
0.00
0.00
0.00
2.17
2161
2428
3.243704
CCCCAAAATCAACAGAAGCGAAA
60.244
43.478
0.00
0.00
0.00
3.46
2162
2429
2.295909
CCCCAAAATCAACAGAAGCGAA
59.704
45.455
0.00
0.00
0.00
4.70
2163
2430
1.885887
CCCCAAAATCAACAGAAGCGA
59.114
47.619
0.00
0.00
0.00
4.93
2164
2431
1.067635
CCCCCAAAATCAACAGAAGCG
60.068
52.381
0.00
0.00
0.00
4.68
2165
2432
2.749280
CCCCCAAAATCAACAGAAGC
57.251
50.000
0.00
0.00
0.00
3.86
2187
2454
2.132352
CCTAGCGTCTGGTACCCCC
61.132
68.421
10.07
0.00
0.00
5.40
2188
2455
2.132352
CCCTAGCGTCTGGTACCCC
61.132
68.421
10.07
0.00
0.00
4.95
2189
2456
1.076485
TCCCTAGCGTCTGGTACCC
60.076
63.158
10.07
0.00
0.00
3.69
2190
2457
1.390383
GGTCCCTAGCGTCTGGTACC
61.390
65.000
4.43
4.43
0.00
3.34
2191
2458
1.390383
GGGTCCCTAGCGTCTGGTAC
61.390
65.000
0.00
0.00
0.00
3.34
2192
2459
1.076485
GGGTCCCTAGCGTCTGGTA
60.076
63.158
0.00
0.00
0.00
3.25
2193
2460
2.363925
GGGTCCCTAGCGTCTGGT
60.364
66.667
0.00
0.00
0.00
4.00
2194
2461
2.042843
AGGGTCCCTAGCGTCTGG
60.043
66.667
9.39
0.00
28.47
3.86
2195
2462
2.427245
CCAGGGTCCCTAGCGTCTG
61.427
68.421
11.12
0.00
29.64
3.51
2196
2463
2.042843
CCAGGGTCCCTAGCGTCT
60.043
66.667
11.12
0.00
29.64
4.18
2197
2464
3.851128
GCCAGGGTCCCTAGCGTC
61.851
72.222
12.97
0.00
27.51
5.19
2200
2467
2.967946
AAACGCCAGGGTCCCTAGC
61.968
63.158
17.82
17.82
35.00
3.42
2201
2468
1.078426
CAAACGCCAGGGTCCCTAG
60.078
63.158
11.12
4.06
29.64
3.02
2202
2469
2.598787
CCAAACGCCAGGGTCCCTA
61.599
63.158
11.12
0.00
29.64
3.53
2203
2470
3.966543
CCAAACGCCAGGGTCCCT
61.967
66.667
3.85
3.85
0.00
4.20
2204
2471
1.917336
TATCCAAACGCCAGGGTCCC
61.917
60.000
0.00
0.00
0.00
4.46
2205
2472
0.182775
ATATCCAAACGCCAGGGTCC
59.817
55.000
0.00
0.00
0.00
4.46
2206
2473
2.052782
AATATCCAAACGCCAGGGTC
57.947
50.000
0.00
0.00
0.00
4.46
2207
2474
2.099405
CAAATATCCAAACGCCAGGGT
58.901
47.619
0.00
0.00
0.00
4.34
2208
2475
1.408702
CCAAATATCCAAACGCCAGGG
59.591
52.381
0.00
0.00
0.00
4.45
2209
2476
1.408702
CCCAAATATCCAAACGCCAGG
59.591
52.381
0.00
0.00
0.00
4.45
2210
2477
1.202405
GCCCAAATATCCAAACGCCAG
60.202
52.381
0.00
0.00
0.00
4.85
2211
2478
0.820871
GCCCAAATATCCAAACGCCA
59.179
50.000
0.00
0.00
0.00
5.69
2212
2479
0.104120
GGCCCAAATATCCAAACGCC
59.896
55.000
0.00
0.00
0.00
5.68
2213
2480
0.820871
TGGCCCAAATATCCAAACGC
59.179
50.000
0.00
0.00
0.00
4.84
2214
2481
2.430332
ACATGGCCCAAATATCCAAACG
59.570
45.455
0.00
0.00
33.04
3.60
2215
2482
3.450457
TGACATGGCCCAAATATCCAAAC
59.550
43.478
0.00
0.00
33.04
2.93
2216
2483
3.717576
TGACATGGCCCAAATATCCAAA
58.282
40.909
0.00
0.00
33.04
3.28
2217
2484
3.395054
TGACATGGCCCAAATATCCAA
57.605
42.857
0.00
0.00
33.04
3.53
2218
2485
3.030291
GTTGACATGGCCCAAATATCCA
58.970
45.455
0.00
0.00
0.00
3.41
2219
2486
2.365293
GGTTGACATGGCCCAAATATCC
59.635
50.000
0.00
0.00
0.00
2.59
2220
2487
3.030291
TGGTTGACATGGCCCAAATATC
58.970
45.455
0.00
0.00
0.00
1.63
2221
2488
3.033184
CTGGTTGACATGGCCCAAATAT
58.967
45.455
0.00
0.00
0.00
1.28
2222
2489
2.042297
TCTGGTTGACATGGCCCAAATA
59.958
45.455
0.00
0.00
0.00
1.40
2223
2490
1.203162
TCTGGTTGACATGGCCCAAAT
60.203
47.619
0.00
0.00
0.00
2.32
2224
2491
0.187117
TCTGGTTGACATGGCCCAAA
59.813
50.000
0.00
0.00
0.00
3.28
2225
2492
0.409092
ATCTGGTTGACATGGCCCAA
59.591
50.000
0.00
0.00
0.00
4.12
2226
2493
0.323633
CATCTGGTTGACATGGCCCA
60.324
55.000
0.00
0.00
0.00
5.36
2227
2494
1.669999
GCATCTGGTTGACATGGCCC
61.670
60.000
0.00
0.00
0.00
5.80
2228
2495
1.669999
GGCATCTGGTTGACATGGCC
61.670
60.000
0.00
0.00
33.98
5.36
2229
2496
1.811860
GGCATCTGGTTGACATGGC
59.188
57.895
0.00
0.00
0.00
4.40
2230
2497
0.392863
TCGGCATCTGGTTGACATGG
60.393
55.000
0.00
0.00
0.00
3.66
2231
2498
1.012086
CTCGGCATCTGGTTGACATG
58.988
55.000
0.00
0.00
0.00
3.21
2232
2499
0.107508
CCTCGGCATCTGGTTGACAT
60.108
55.000
0.00
0.00
0.00
3.06
2233
2500
1.191489
TCCTCGGCATCTGGTTGACA
61.191
55.000
0.00
0.00
0.00
3.58
2234
2501
0.741221
GTCCTCGGCATCTGGTTGAC
60.741
60.000
0.00
0.00
0.00
3.18
2235
2502
1.596934
GTCCTCGGCATCTGGTTGA
59.403
57.895
0.00
0.00
0.00
3.18
2236
2503
1.450312
GGTCCTCGGCATCTGGTTG
60.450
63.158
0.00
0.00
0.00
3.77
2237
2504
2.670148
GGGTCCTCGGCATCTGGTT
61.670
63.158
0.00
0.00
0.00
3.67
2238
2505
3.083997
GGGTCCTCGGCATCTGGT
61.084
66.667
0.00
0.00
0.00
4.00
2239
2506
2.765807
AGGGTCCTCGGCATCTGG
60.766
66.667
0.00
0.00
0.00
3.86
2240
2507
2.503061
CAGGGTCCTCGGCATCTG
59.497
66.667
0.00
0.00
0.00
2.90
2241
2508
2.765807
CCAGGGTCCTCGGCATCT
60.766
66.667
0.00
0.00
0.00
2.90
2242
2509
4.554036
GCCAGGGTCCTCGGCATC
62.554
72.222
18.82
0.00
45.52
3.91
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.