Multiple sequence alignment - TraesCS3B01G172300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G172300 chr3B 100.000 2372 0 0 1 2372 173031575 173033946 0.000000e+00 4381
1 TraesCS3B01G172300 chr3B 96.499 457 10 3 1717 2168 173033061 173033516 0.000000e+00 750
2 TraesCS3B01G172300 chr3B 96.499 457 10 3 1487 1942 173033291 173033742 0.000000e+00 750
3 TraesCS3B01G172300 chr3B 92.798 361 13 6 1366 1715 173035659 173035301 5.850000e-141 510
4 TraesCS3B01G172300 chr3B 96.535 202 4 2 1 202 492595620 492595818 4.890000e-87 331
5 TraesCS3B01G172300 chr3A 94.286 770 35 4 602 1365 127865131 127865897 0.000000e+00 1170
6 TraesCS3B01G172300 chr3A 92.063 252 14 3 210 455 341285143 341284892 1.350000e-92 350
7 TraesCS3B01G172300 chr3A 89.655 87 9 0 476 562 127863003 127863089 6.930000e-21 111
8 TraesCS3B01G172300 chr3D 90.959 542 25 8 476 1012 121378106 121378628 0.000000e+00 708
9 TraesCS3B01G172300 chr3D 96.515 373 10 1 996 1365 121378643 121379015 4.330000e-172 614
10 TraesCS3B01G172300 chr7B 94.318 440 11 5 1943 2372 675872545 675872110 0.000000e+00 662
11 TraesCS3B01G172300 chr7B 96.562 349 12 0 1367 1715 675872664 675872316 1.580000e-161 579
12 TraesCS3B01G172300 chr7B 95.062 324 14 2 1366 1688 675870396 675870718 2.100000e-140 508
13 TraesCS3B01G172300 chr7B 96.104 231 4 2 1716 1942 675872545 675872316 2.880000e-99 372
14 TraesCS3B01G172300 chr7B 96.059 203 4 3 1 202 121480892 121480693 6.320000e-86 327
15 TraesCS3B01G172300 chr1A 87.838 592 33 14 1367 1942 551506873 551507441 0.000000e+00 658
16 TraesCS3B01G172300 chr1A 91.264 435 27 3 1944 2372 551509227 551508798 1.220000e-162 582
17 TraesCS3B01G172300 chr1A 93.696 349 17 1 1367 1715 551509347 551509004 3.490000e-143 518
18 TraesCS3B01G172300 chr1A 90.870 230 11 3 1717 1942 551509227 551509004 1.380000e-77 300
19 TraesCS3B01G172300 chr2B 94.037 436 16 5 1944 2372 187167700 187168132 0.000000e+00 652
20 TraesCS3B01G172300 chr2B 94.302 351 19 1 1366 1715 187167579 187167929 9.650000e-149 536
21 TraesCS3B01G172300 chr2B 86.079 431 47 11 1946 2368 655212507 655212082 3.600000e-123 451
22 TraesCS3B01G172300 chr2B 96.087 230 5 1 1717 1942 187167700 187167929 2.880000e-99 372
23 TraesCS3B01G172300 chr2B 96.535 202 4 2 1 202 38191203 38191401 4.890000e-87 331
24 TraesCS3B01G172300 chr2B 96.535 202 4 2 1 202 38200692 38200890 4.890000e-87 331
25 TraesCS3B01G172300 chr2A 94.571 350 18 1 1366 1715 196129232 196128884 7.460000e-150 540
26 TraesCS3B01G172300 chr2A 93.593 359 20 3 1360 1715 196126576 196126934 1.250000e-147 532
27 TraesCS3B01G172300 chr2A 94.348 230 7 3 1717 1942 196129111 196128884 4.850000e-92 348
28 TraesCS3B01G172300 chr2A 91.775 231 14 3 1717 1942 196126704 196126934 1.370000e-82 316
29 TraesCS3B01G172300 chr7A 86.499 437 48 8 1946 2372 6619230 6618795 9.930000e-129 470
30 TraesCS3B01G172300 chr7A 91.600 250 15 3 210 453 19191611 19191362 8.120000e-90 340
31 TraesCS3B01G172300 chr4B 86.775 431 46 8 1946 2368 64816059 64816486 9.930000e-129 470
32 TraesCS3B01G172300 chr5D 87.290 417 44 6 1946 2355 21671938 21671524 3.570000e-128 468
33 TraesCS3B01G172300 chr5D 92.276 246 13 2 216 455 350229155 350228910 6.280000e-91 344
34 TraesCS3B01G172300 chr5D 90.661 257 18 3 206 456 281662740 281662996 1.050000e-88 337
35 TraesCS3B01G172300 chr5D 90.948 232 11 7 1719 1943 21671938 21671710 1.070000e-78 303
36 TraesCS3B01G172300 chr6A 85.847 431 50 8 1946 2368 89197630 89198057 4.650000e-122 448
37 TraesCS3B01G172300 chr6A 93.333 240 15 1 217 455 153508889 153508650 1.040000e-93 353
38 TraesCS3B01G172300 chr6A 89.474 266 21 3 210 468 30603514 30603249 1.760000e-86 329
39 TraesCS3B01G172300 chr1B 92.188 256 17 2 210 462 240502514 240502259 2.240000e-95 359
40 TraesCS3B01G172300 chr1B 96.059 203 4 3 1 202 606350575 606350376 6.320000e-86 327
41 TraesCS3B01G172300 chr2D 92.713 247 12 3 215 455 382165571 382165817 3.750000e-93 351
42 TraesCS3B01G172300 chr4A 91.270 252 16 3 210 455 609184103 609183852 2.920000e-89 339
43 TraesCS3B01G172300 chr6B 96.552 203 4 2 1 203 514638882 514638683 1.360000e-87 333
44 TraesCS3B01G172300 chr6B 96.059 203 4 3 1 202 561864765 561864964 6.320000e-86 327
45 TraesCS3B01G172300 chr6B 89.655 232 15 6 1719 1943 502008700 502008929 1.070000e-73 287
46 TraesCS3B01G172300 chr6B 84.434 212 18 4 616 827 420847750 420847554 6.690000e-46 195
47 TraesCS3B01G172300 chr5B 96.535 202 4 2 1 202 681101306 681101108 4.890000e-87 331
48 TraesCS3B01G172300 chr5B 96.059 203 4 3 1 202 141931946 141931747 6.320000e-86 327


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G172300 chr3B 173031575 173033946 2371 False 1960.333333 4381 97.666000 1 2372 3 chr3B.!!$F2 2371
1 TraesCS3B01G172300 chr3A 127863003 127865897 2894 False 640.500000 1170 91.970500 476 1365 2 chr3A.!!$F1 889
2 TraesCS3B01G172300 chr3D 121378106 121379015 909 False 661.000000 708 93.737000 476 1365 2 chr3D.!!$F1 889
3 TraesCS3B01G172300 chr7B 675872110 675872664 554 True 537.666667 662 95.661333 1367 2372 3 chr7B.!!$R2 1005
4 TraesCS3B01G172300 chr1A 551506873 551507441 568 False 658.000000 658 87.838000 1367 1942 1 chr1A.!!$F1 575
5 TraesCS3B01G172300 chr1A 551508798 551509347 549 True 466.666667 582 91.943333 1367 2372 3 chr1A.!!$R1 1005
6 TraesCS3B01G172300 chr2B 187167579 187168132 553 False 520.000000 652 94.808667 1366 2372 3 chr2B.!!$F3 1006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 303 0.173708 CCAACGACCTAGACTGCTCC 59.826 60.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 3781 0.17899 GGGCCCCATTGGTCAGATAC 60.179 60.0 12.23 0.0 42.2 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.953158 TCTTGCTATCACATAGTTGCTTATC 57.047 36.000 0.00 0.00 35.29 1.75
28 29 7.730084 TCTTGCTATCACATAGTTGCTTATCT 58.270 34.615 0.00 0.00 35.29 1.98
29 30 8.206867 TCTTGCTATCACATAGTTGCTTATCTT 58.793 33.333 0.00 0.00 35.29 2.40
30 31 7.719778 TGCTATCACATAGTTGCTTATCTTG 57.280 36.000 0.00 0.00 35.29 3.02
31 32 6.203530 TGCTATCACATAGTTGCTTATCTTGC 59.796 38.462 0.00 0.00 35.29 4.01
32 33 6.426328 GCTATCACATAGTTGCTTATCTTGCT 59.574 38.462 0.00 0.00 35.29 3.91
33 34 7.041508 GCTATCACATAGTTGCTTATCTTGCTT 60.042 37.037 0.00 0.00 35.29 3.91
34 35 9.481340 CTATCACATAGTTGCTTATCTTGCTTA 57.519 33.333 0.00 0.00 0.00 3.09
35 36 7.776933 TCACATAGTTGCTTATCTTGCTTAG 57.223 36.000 0.00 0.00 0.00 2.18
36 37 6.258727 TCACATAGTTGCTTATCTTGCTTAGC 59.741 38.462 0.00 0.00 0.00 3.09
37 38 6.037500 CACATAGTTGCTTATCTTGCTTAGCA 59.962 38.462 1.39 1.39 41.51 3.49
38 39 6.769822 ACATAGTTGCTTATCTTGCTTAGCAT 59.230 34.615 8.05 0.00 42.60 3.79
39 40 7.933577 ACATAGTTGCTTATCTTGCTTAGCATA 59.066 33.333 8.05 0.00 42.60 3.14
40 41 8.777413 CATAGTTGCTTATCTTGCTTAGCATAA 58.223 33.333 8.05 3.12 42.60 1.90
41 42 7.256756 AGTTGCTTATCTTGCTTAGCATAAG 57.743 36.000 17.07 17.07 42.60 1.73
42 43 6.825721 AGTTGCTTATCTTGCTTAGCATAAGT 59.174 34.615 20.34 7.29 42.60 2.24
43 44 7.337942 AGTTGCTTATCTTGCTTAGCATAAGTT 59.662 33.333 20.34 10.01 42.60 2.66
44 45 7.019774 TGCTTATCTTGCTTAGCATAAGTTG 57.980 36.000 20.34 8.42 38.61 3.16
45 46 6.599244 TGCTTATCTTGCTTAGCATAAGTTGT 59.401 34.615 20.34 7.00 38.61 3.32
46 47 7.121168 TGCTTATCTTGCTTAGCATAAGTTGTT 59.879 33.333 20.34 4.38 38.61 2.83
47 48 7.430502 GCTTATCTTGCTTAGCATAAGTTGTTG 59.569 37.037 20.34 5.16 38.76 3.33
48 49 5.627499 TCTTGCTTAGCATAAGTTGTTGG 57.373 39.130 8.05 0.00 38.76 3.77
49 50 5.070001 TCTTGCTTAGCATAAGTTGTTGGT 58.930 37.500 8.05 0.00 38.76 3.67
50 51 4.764679 TGCTTAGCATAAGTTGTTGGTG 57.235 40.909 1.39 0.00 31.71 4.17
51 52 3.057596 TGCTTAGCATAAGTTGTTGGTGC 60.058 43.478 1.39 0.00 31.71 5.01
52 53 3.057596 GCTTAGCATAAGTTGTTGGTGCA 60.058 43.478 0.00 0.00 38.23 4.57
53 54 4.475944 CTTAGCATAAGTTGTTGGTGCAC 58.524 43.478 8.80 8.80 38.23 4.57
54 55 2.305928 AGCATAAGTTGTTGGTGCACA 58.694 42.857 20.43 1.62 38.23 4.57
55 56 2.892852 AGCATAAGTTGTTGGTGCACAT 59.107 40.909 20.43 0.00 38.23 3.21
56 57 4.078537 AGCATAAGTTGTTGGTGCACATA 58.921 39.130 20.43 3.77 38.23 2.29
57 58 4.156556 AGCATAAGTTGTTGGTGCACATAG 59.843 41.667 20.43 0.00 38.23 2.23
58 59 4.675146 GCATAAGTTGTTGGTGCACATAGG 60.675 45.833 20.43 1.52 35.93 2.57
59 60 2.656947 AGTTGTTGGTGCACATAGGT 57.343 45.000 20.43 0.00 0.00 3.08
76 77 7.159322 ACATAGGTGAGTCTAGTTGTTGTAG 57.841 40.000 0.00 0.00 0.00 2.74
77 78 6.153000 ACATAGGTGAGTCTAGTTGTTGTAGG 59.847 42.308 0.00 0.00 0.00 3.18
78 79 4.481072 AGGTGAGTCTAGTTGTTGTAGGT 58.519 43.478 0.00 0.00 0.00 3.08
79 80 4.900054 AGGTGAGTCTAGTTGTTGTAGGTT 59.100 41.667 0.00 0.00 0.00 3.50
80 81 5.365895 AGGTGAGTCTAGTTGTTGTAGGTTT 59.634 40.000 0.00 0.00 0.00 3.27
81 82 6.053650 GGTGAGTCTAGTTGTTGTAGGTTTT 58.946 40.000 0.00 0.00 0.00 2.43
82 83 6.018180 GGTGAGTCTAGTTGTTGTAGGTTTTG 60.018 42.308 0.00 0.00 0.00 2.44
83 84 6.537660 GTGAGTCTAGTTGTTGTAGGTTTTGT 59.462 38.462 0.00 0.00 0.00 2.83
84 85 6.537301 TGAGTCTAGTTGTTGTAGGTTTTGTG 59.463 38.462 0.00 0.00 0.00 3.33
85 86 5.296035 AGTCTAGTTGTTGTAGGTTTTGTGC 59.704 40.000 0.00 0.00 0.00 4.57
86 87 5.296035 GTCTAGTTGTTGTAGGTTTTGTGCT 59.704 40.000 0.00 0.00 0.00 4.40
87 88 5.883673 TCTAGTTGTTGTAGGTTTTGTGCTT 59.116 36.000 0.00 0.00 0.00 3.91
88 89 4.743493 AGTTGTTGTAGGTTTTGTGCTTG 58.257 39.130 0.00 0.00 0.00 4.01
89 90 4.461081 AGTTGTTGTAGGTTTTGTGCTTGA 59.539 37.500 0.00 0.00 0.00 3.02
90 91 4.364415 TGTTGTAGGTTTTGTGCTTGAC 57.636 40.909 0.00 0.00 0.00 3.18
91 92 3.759086 TGTTGTAGGTTTTGTGCTTGACA 59.241 39.130 0.00 0.00 0.00 3.58
92 93 4.218635 TGTTGTAGGTTTTGTGCTTGACAA 59.781 37.500 0.00 0.00 43.11 3.18
101 102 4.640789 TTGTGCTTGACAAATTAACCGT 57.359 36.364 0.00 0.00 41.80 4.83
102 103 4.640789 TGTGCTTGACAAATTAACCGTT 57.359 36.364 0.00 0.00 0.00 4.44
103 104 5.752892 TGTGCTTGACAAATTAACCGTTA 57.247 34.783 0.00 0.00 0.00 3.18
104 105 5.753744 TGTGCTTGACAAATTAACCGTTAG 58.246 37.500 0.00 0.00 0.00 2.34
105 106 5.151389 GTGCTTGACAAATTAACCGTTAGG 58.849 41.667 0.00 0.00 45.13 2.69
119 120 4.625972 CCGTTAGGTTTATTCCGCATTT 57.374 40.909 0.00 0.00 0.00 2.32
120 121 4.347813 CCGTTAGGTTTATTCCGCATTTG 58.652 43.478 0.00 0.00 0.00 2.32
121 122 4.142556 CCGTTAGGTTTATTCCGCATTTGT 60.143 41.667 0.00 0.00 0.00 2.83
122 123 5.395642 CGTTAGGTTTATTCCGCATTTGTT 58.604 37.500 0.00 0.00 0.00 2.83
123 124 5.510323 CGTTAGGTTTATTCCGCATTTGTTC 59.490 40.000 0.00 0.00 0.00 3.18
124 125 6.383415 GTTAGGTTTATTCCGCATTTGTTCA 58.617 36.000 0.00 0.00 0.00 3.18
125 126 5.461032 AGGTTTATTCCGCATTTGTTCAA 57.539 34.783 0.00 0.00 0.00 2.69
126 127 5.469479 AGGTTTATTCCGCATTTGTTCAAG 58.531 37.500 0.00 0.00 0.00 3.02
127 128 4.091365 GGTTTATTCCGCATTTGTTCAAGC 59.909 41.667 0.00 0.00 0.00 4.01
128 129 2.368655 ATTCCGCATTTGTTCAAGCC 57.631 45.000 0.00 0.00 0.00 4.35
129 130 1.327303 TTCCGCATTTGTTCAAGCCT 58.673 45.000 0.00 0.00 0.00 4.58
130 131 0.881118 TCCGCATTTGTTCAAGCCTC 59.119 50.000 0.00 0.00 0.00 4.70
131 132 0.883833 CCGCATTTGTTCAAGCCTCT 59.116 50.000 0.00 0.00 0.00 3.69
132 133 2.083774 CCGCATTTGTTCAAGCCTCTA 58.916 47.619 0.00 0.00 0.00 2.43
133 134 2.159517 CCGCATTTGTTCAAGCCTCTAC 60.160 50.000 0.00 0.00 0.00 2.59
134 135 2.159517 CGCATTTGTTCAAGCCTCTACC 60.160 50.000 0.00 0.00 0.00 3.18
135 136 2.159517 GCATTTGTTCAAGCCTCTACCG 60.160 50.000 0.00 0.00 0.00 4.02
136 137 2.922740 TTTGTTCAAGCCTCTACCGT 57.077 45.000 0.00 0.00 0.00 4.83
137 138 4.250464 CATTTGTTCAAGCCTCTACCGTA 58.750 43.478 0.00 0.00 0.00 4.02
138 139 4.339872 TTTGTTCAAGCCTCTACCGTAA 57.660 40.909 0.00 0.00 0.00 3.18
139 140 4.546829 TTGTTCAAGCCTCTACCGTAAT 57.453 40.909 0.00 0.00 0.00 1.89
140 141 4.546829 TGTTCAAGCCTCTACCGTAATT 57.453 40.909 0.00 0.00 0.00 1.40
141 142 5.664294 TGTTCAAGCCTCTACCGTAATTA 57.336 39.130 0.00 0.00 0.00 1.40
142 143 6.229936 TGTTCAAGCCTCTACCGTAATTAT 57.770 37.500 0.00 0.00 0.00 1.28
143 144 6.646267 TGTTCAAGCCTCTACCGTAATTATT 58.354 36.000 0.00 0.00 0.00 1.40
144 145 7.107542 TGTTCAAGCCTCTACCGTAATTATTT 58.892 34.615 0.00 0.00 0.00 1.40
145 146 7.608761 TGTTCAAGCCTCTACCGTAATTATTTT 59.391 33.333 0.00 0.00 0.00 1.82
146 147 9.101655 GTTCAAGCCTCTACCGTAATTATTTTA 57.898 33.333 0.00 0.00 0.00 1.52
147 148 9.669887 TTCAAGCCTCTACCGTAATTATTTTAA 57.330 29.630 0.00 0.00 0.00 1.52
148 149 9.669887 TCAAGCCTCTACCGTAATTATTTTAAA 57.330 29.630 0.00 0.00 0.00 1.52
151 152 8.606602 AGCCTCTACCGTAATTATTTTAAAACG 58.393 33.333 1.97 1.84 0.00 3.60
152 153 7.374228 GCCTCTACCGTAATTATTTTAAAACGC 59.626 37.037 1.97 0.00 0.00 4.84
153 154 7.852454 CCTCTACCGTAATTATTTTAAAACGCC 59.148 37.037 1.97 0.00 0.00 5.68
154 155 8.491331 TCTACCGTAATTATTTTAAAACGCCT 57.509 30.769 1.97 0.00 0.00 5.52
155 156 9.593134 TCTACCGTAATTATTTTAAAACGCCTA 57.407 29.630 1.97 0.00 0.00 3.93
158 159 9.720667 ACCGTAATTATTTTAAAACGCCTATTC 57.279 29.630 1.97 0.00 0.00 1.75
159 160 9.719279 CCGTAATTATTTTAAAACGCCTATTCA 57.281 29.630 1.97 0.00 0.00 2.57
162 163 8.936070 AATTATTTTAAAACGCCTATTCACCC 57.064 30.769 1.97 0.00 0.00 4.61
163 164 4.787260 TTTTAAAACGCCTATTCACCCC 57.213 40.909 0.00 0.00 0.00 4.95
164 165 2.423446 TAAAACGCCTATTCACCCCC 57.577 50.000 0.00 0.00 0.00 5.40
178 179 3.460995 CCCCCTCTAGGCGTCATC 58.539 66.667 0.00 0.00 0.00 2.92
179 180 2.210711 CCCCCTCTAGGCGTCATCC 61.211 68.421 0.00 0.00 0.00 3.51
180 181 1.457643 CCCCTCTAGGCGTCATCCA 60.458 63.158 0.00 0.00 0.00 3.41
181 182 1.742768 CCCTCTAGGCGTCATCCAC 59.257 63.158 0.00 0.00 0.00 4.02
182 183 1.043116 CCCTCTAGGCGTCATCCACA 61.043 60.000 0.00 0.00 0.00 4.17
183 184 0.824109 CCTCTAGGCGTCATCCACAA 59.176 55.000 0.00 0.00 0.00 3.33
184 185 1.414181 CCTCTAGGCGTCATCCACAAT 59.586 52.381 0.00 0.00 0.00 2.71
185 186 2.546795 CCTCTAGGCGTCATCCACAATC 60.547 54.545 0.00 0.00 0.00 2.67
186 187 2.363680 CTCTAGGCGTCATCCACAATCT 59.636 50.000 0.00 0.00 0.00 2.40
187 188 2.766263 TCTAGGCGTCATCCACAATCTT 59.234 45.455 0.00 0.00 0.00 2.40
188 189 2.496899 AGGCGTCATCCACAATCTTT 57.503 45.000 0.00 0.00 0.00 2.52
189 190 2.359900 AGGCGTCATCCACAATCTTTC 58.640 47.619 0.00 0.00 0.00 2.62
190 191 2.083774 GGCGTCATCCACAATCTTTCA 58.916 47.619 0.00 0.00 0.00 2.69
191 192 2.159517 GGCGTCATCCACAATCTTTCAC 60.160 50.000 0.00 0.00 0.00 3.18
192 193 2.159517 GCGTCATCCACAATCTTTCACC 60.160 50.000 0.00 0.00 0.00 4.02
193 194 3.073678 CGTCATCCACAATCTTTCACCA 58.926 45.455 0.00 0.00 0.00 4.17
194 195 3.691118 CGTCATCCACAATCTTTCACCAT 59.309 43.478 0.00 0.00 0.00 3.55
195 196 4.156556 CGTCATCCACAATCTTTCACCATT 59.843 41.667 0.00 0.00 0.00 3.16
196 197 5.353956 CGTCATCCACAATCTTTCACCATTA 59.646 40.000 0.00 0.00 0.00 1.90
197 198 6.457392 CGTCATCCACAATCTTTCACCATTAG 60.457 42.308 0.00 0.00 0.00 1.73
198 199 5.887598 TCATCCACAATCTTTCACCATTAGG 59.112 40.000 0.00 0.00 42.21 2.69
242 243 9.991906 TCTATACCAATATAAAAAGACCCGAAG 57.008 33.333 0.00 0.00 0.00 3.79
257 258 2.231215 CGAAGGGGCAGATCTAACTG 57.769 55.000 0.00 0.00 40.43 3.16
258 259 1.757118 CGAAGGGGCAGATCTAACTGA 59.243 52.381 0.00 0.00 39.94 3.41
259 260 2.366916 CGAAGGGGCAGATCTAACTGAT 59.633 50.000 0.00 0.00 39.94 2.90
268 269 3.951775 GATCTAACTGATCTCGGCCAT 57.048 47.619 2.24 0.00 46.05 4.40
269 270 3.843999 GATCTAACTGATCTCGGCCATC 58.156 50.000 2.24 0.00 46.05 3.51
270 271 2.666317 TCTAACTGATCTCGGCCATCA 58.334 47.619 2.24 3.52 0.00 3.07
271 272 3.031013 TCTAACTGATCTCGGCCATCAA 58.969 45.455 2.24 0.00 29.74 2.57
272 273 2.787473 AACTGATCTCGGCCATCAAA 57.213 45.000 2.24 0.00 29.74 2.69
273 274 2.029838 ACTGATCTCGGCCATCAAAC 57.970 50.000 2.24 0.00 29.74 2.93
274 275 1.556911 ACTGATCTCGGCCATCAAACT 59.443 47.619 2.24 0.00 29.74 2.66
275 276 2.766263 ACTGATCTCGGCCATCAAACTA 59.234 45.455 2.24 0.00 29.74 2.24
276 277 3.197766 ACTGATCTCGGCCATCAAACTAA 59.802 43.478 2.24 0.00 29.74 2.24
277 278 3.797039 TGATCTCGGCCATCAAACTAAG 58.203 45.455 2.24 0.00 0.00 2.18
278 279 3.197766 TGATCTCGGCCATCAAACTAAGT 59.802 43.478 2.24 0.00 0.00 2.24
279 280 3.247006 TCTCGGCCATCAAACTAAGTC 57.753 47.619 2.24 0.00 0.00 3.01
280 281 2.565391 TCTCGGCCATCAAACTAAGTCA 59.435 45.455 2.24 0.00 0.00 3.41
281 282 3.007506 TCTCGGCCATCAAACTAAGTCAA 59.992 43.478 2.24 0.00 0.00 3.18
282 283 3.941483 CTCGGCCATCAAACTAAGTCAAT 59.059 43.478 2.24 0.00 0.00 2.57
283 284 3.938963 TCGGCCATCAAACTAAGTCAATC 59.061 43.478 2.24 0.00 0.00 2.67
284 285 3.065371 CGGCCATCAAACTAAGTCAATCC 59.935 47.826 2.24 0.00 0.00 3.01
285 286 4.016444 GGCCATCAAACTAAGTCAATCCA 58.984 43.478 0.00 0.00 0.00 3.41
286 287 4.462483 GGCCATCAAACTAAGTCAATCCAA 59.538 41.667 0.00 0.00 0.00 3.53
287 288 5.402398 GCCATCAAACTAAGTCAATCCAAC 58.598 41.667 0.00 0.00 0.00 3.77
288 289 5.631026 CCATCAAACTAAGTCAATCCAACG 58.369 41.667 0.00 0.00 0.00 4.10
289 290 5.411361 CCATCAAACTAAGTCAATCCAACGA 59.589 40.000 0.00 0.00 0.00 3.85
290 291 5.917541 TCAAACTAAGTCAATCCAACGAC 57.082 39.130 0.00 0.00 0.00 4.34
291 292 4.753107 TCAAACTAAGTCAATCCAACGACC 59.247 41.667 0.00 0.00 32.33 4.79
292 293 4.618920 AACTAAGTCAATCCAACGACCT 57.381 40.909 0.00 0.00 32.33 3.85
293 294 5.733620 AACTAAGTCAATCCAACGACCTA 57.266 39.130 0.00 0.00 32.33 3.08
294 295 5.326200 ACTAAGTCAATCCAACGACCTAG 57.674 43.478 0.00 0.00 33.98 3.02
295 296 5.014858 ACTAAGTCAATCCAACGACCTAGA 58.985 41.667 0.00 0.00 32.71 2.43
296 297 3.870633 AGTCAATCCAACGACCTAGAC 57.129 47.619 0.00 0.00 32.33 2.59
297 298 3.432378 AGTCAATCCAACGACCTAGACT 58.568 45.455 0.00 0.00 32.33 3.24
298 299 3.193691 AGTCAATCCAACGACCTAGACTG 59.806 47.826 0.00 0.00 34.17 3.51
299 300 2.094182 TCAATCCAACGACCTAGACTGC 60.094 50.000 0.00 0.00 0.00 4.40
300 301 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
301 302 1.174783 TCCAACGACCTAGACTGCTC 58.825 55.000 0.00 0.00 0.00 4.26
302 303 0.173708 CCAACGACCTAGACTGCTCC 59.826 60.000 0.00 0.00 0.00 4.70
303 304 0.888619 CAACGACCTAGACTGCTCCA 59.111 55.000 0.00 0.00 0.00 3.86
304 305 1.272490 CAACGACCTAGACTGCTCCAA 59.728 52.381 0.00 0.00 0.00 3.53
305 306 1.853963 ACGACCTAGACTGCTCCAAT 58.146 50.000 0.00 0.00 0.00 3.16
306 307 1.478510 ACGACCTAGACTGCTCCAATG 59.521 52.381 0.00 0.00 0.00 2.82
307 308 1.202463 CGACCTAGACTGCTCCAATGG 60.202 57.143 0.00 0.00 0.00 3.16
308 309 0.543749 ACCTAGACTGCTCCAATGGC 59.456 55.000 0.00 0.00 0.00 4.40
309 310 0.531532 CCTAGACTGCTCCAATGGCG 60.532 60.000 0.00 0.00 0.00 5.69
310 311 0.461548 CTAGACTGCTCCAATGGCGA 59.538 55.000 0.00 0.00 0.00 5.54
311 312 0.461548 TAGACTGCTCCAATGGCGAG 59.538 55.000 0.00 0.00 0.00 5.03
317 318 2.858622 CTCCAATGGCGAGCTTTCA 58.141 52.632 0.00 0.00 0.00 2.69
318 319 1.167851 CTCCAATGGCGAGCTTTCAA 58.832 50.000 0.00 0.00 0.00 2.69
319 320 0.881118 TCCAATGGCGAGCTTTCAAC 59.119 50.000 0.00 0.00 0.00 3.18
320 321 0.597568 CCAATGGCGAGCTTTCAACA 59.402 50.000 0.00 0.00 0.00 3.33
321 322 1.203052 CCAATGGCGAGCTTTCAACAT 59.797 47.619 0.00 0.00 0.00 2.71
322 323 2.256174 CAATGGCGAGCTTTCAACATG 58.744 47.619 0.00 0.00 0.00 3.21
323 324 1.538047 ATGGCGAGCTTTCAACATGT 58.462 45.000 0.00 0.00 0.00 3.21
324 325 1.317613 TGGCGAGCTTTCAACATGTT 58.682 45.000 4.92 4.92 0.00 2.71
325 326 1.680735 TGGCGAGCTTTCAACATGTTT 59.319 42.857 8.77 0.00 0.00 2.83
326 327 2.881513 TGGCGAGCTTTCAACATGTTTA 59.118 40.909 8.77 0.00 0.00 2.01
327 328 3.316588 TGGCGAGCTTTCAACATGTTTAA 59.683 39.130 8.77 4.51 0.00 1.52
328 329 3.668656 GGCGAGCTTTCAACATGTTTAAC 59.331 43.478 8.77 0.00 0.00 2.01
329 330 3.357823 GCGAGCTTTCAACATGTTTAACG 59.642 43.478 8.77 6.49 0.00 3.18
330 331 4.523813 CGAGCTTTCAACATGTTTAACGT 58.476 39.130 8.77 0.00 0.00 3.99
331 332 4.375698 CGAGCTTTCAACATGTTTAACGTG 59.624 41.667 14.93 14.93 40.80 4.49
332 333 4.041723 AGCTTTCAACATGTTTAACGTGC 58.958 39.130 16.24 11.30 38.65 5.34
333 334 3.794028 GCTTTCAACATGTTTAACGTGCA 59.206 39.130 16.24 0.00 38.65 4.57
334 335 4.266502 GCTTTCAACATGTTTAACGTGCAA 59.733 37.500 16.24 5.28 38.65 4.08
335 336 5.051106 GCTTTCAACATGTTTAACGTGCAAT 60.051 36.000 16.24 1.72 38.65 3.56
336 337 6.509358 GCTTTCAACATGTTTAACGTGCAATT 60.509 34.615 16.24 2.03 38.65 2.32
337 338 7.306283 GCTTTCAACATGTTTAACGTGCAATTA 60.306 33.333 16.24 0.67 38.65 1.40
338 339 7.616103 TTCAACATGTTTAACGTGCAATTAG 57.384 32.000 16.24 2.11 38.65 1.73
339 340 6.730175 TCAACATGTTTAACGTGCAATTAGT 58.270 32.000 16.24 0.00 38.65 2.24
340 341 7.862648 TCAACATGTTTAACGTGCAATTAGTA 58.137 30.769 16.24 0.00 38.65 1.82
341 342 8.508062 TCAACATGTTTAACGTGCAATTAGTAT 58.492 29.630 16.24 0.00 38.65 2.12
342 343 8.785101 CAACATGTTTAACGTGCAATTAGTATC 58.215 33.333 16.24 0.00 38.65 2.24
343 344 8.035165 ACATGTTTAACGTGCAATTAGTATCA 57.965 30.769 16.24 0.00 38.65 2.15
344 345 8.508062 ACATGTTTAACGTGCAATTAGTATCAA 58.492 29.630 16.24 0.00 38.65 2.57
345 346 8.785101 CATGTTTAACGTGCAATTAGTATCAAC 58.215 33.333 4.27 0.00 0.00 3.18
346 347 7.299586 TGTTTAACGTGCAATTAGTATCAACC 58.700 34.615 0.00 0.00 0.00 3.77
347 348 7.041303 TGTTTAACGTGCAATTAGTATCAACCA 60.041 33.333 0.00 0.00 0.00 3.67
348 349 5.950758 AACGTGCAATTAGTATCAACCAA 57.049 34.783 0.00 0.00 0.00 3.67
349 350 5.950758 ACGTGCAATTAGTATCAACCAAA 57.049 34.783 0.00 0.00 0.00 3.28
350 351 6.509418 ACGTGCAATTAGTATCAACCAAAT 57.491 33.333 0.00 0.00 0.00 2.32
351 352 7.618502 ACGTGCAATTAGTATCAACCAAATA 57.381 32.000 0.00 0.00 0.00 1.40
352 353 8.220755 ACGTGCAATTAGTATCAACCAAATAT 57.779 30.769 0.00 0.00 0.00 1.28
353 354 8.682710 ACGTGCAATTAGTATCAACCAAATATT 58.317 29.630 0.00 0.00 0.00 1.28
354 355 8.957028 CGTGCAATTAGTATCAACCAAATATTG 58.043 33.333 0.00 0.00 0.00 1.90
355 356 8.755018 GTGCAATTAGTATCAACCAAATATTGC 58.245 33.333 0.00 0.00 0.00 3.56
356 357 8.473219 TGCAATTAGTATCAACCAAATATTGCA 58.527 29.630 12.88 12.88 30.51 4.08
357 358 8.755018 GCAATTAGTATCAACCAAATATTGCAC 58.245 33.333 0.00 0.00 0.00 4.57
363 364 9.407380 AGTATCAACCAAATATTGCACTAATCA 57.593 29.630 0.00 0.00 0.00 2.57
364 365 9.450807 GTATCAACCAAATATTGCACTAATCAC 57.549 33.333 0.00 0.00 0.00 3.06
365 366 7.459795 TCAACCAAATATTGCACTAATCACA 57.540 32.000 0.00 0.00 0.00 3.58
366 367 7.537715 TCAACCAAATATTGCACTAATCACAG 58.462 34.615 0.00 0.00 0.00 3.66
367 368 7.392953 TCAACCAAATATTGCACTAATCACAGA 59.607 33.333 0.00 0.00 0.00 3.41
368 369 7.701539 ACCAAATATTGCACTAATCACAGAA 57.298 32.000 0.00 0.00 0.00 3.02
369 370 8.297470 ACCAAATATTGCACTAATCACAGAAT 57.703 30.769 0.00 0.00 0.00 2.40
370 371 8.752187 ACCAAATATTGCACTAATCACAGAATT 58.248 29.630 0.00 0.00 0.00 2.17
376 377 7.503521 TTGCACTAATCACAGAATTAACACA 57.496 32.000 0.00 0.00 0.00 3.72
377 378 7.686438 TGCACTAATCACAGAATTAACACAT 57.314 32.000 0.00 0.00 0.00 3.21
378 379 8.785329 TGCACTAATCACAGAATTAACACATA 57.215 30.769 0.00 0.00 0.00 2.29
379 380 9.225436 TGCACTAATCACAGAATTAACACATAA 57.775 29.630 0.00 0.00 0.00 1.90
404 405 9.944376 AAATAATATCTAATATCCACGTGCAGT 57.056 29.630 10.91 0.05 0.00 4.40
405 406 9.944376 AATAATATCTAATATCCACGTGCAGTT 57.056 29.630 10.91 4.58 0.00 3.16
408 409 9.944376 AATATCTAATATCCACGTGCAGTTAAT 57.056 29.630 10.91 0.00 0.00 1.40
415 416 5.666969 TCCACGTGCAGTTAATATATTGC 57.333 39.130 10.91 4.31 37.09 3.56
416 417 4.513692 TCCACGTGCAGTTAATATATTGCC 59.486 41.667 10.91 0.00 35.75 4.52
417 418 4.515191 CCACGTGCAGTTAATATATTGCCT 59.485 41.667 10.91 1.04 35.75 4.75
418 419 5.699001 CCACGTGCAGTTAATATATTGCCTA 59.301 40.000 10.91 0.00 35.75 3.93
419 420 6.203915 CCACGTGCAGTTAATATATTGCCTAA 59.796 38.462 10.91 0.00 35.75 2.69
420 421 7.254966 CCACGTGCAGTTAATATATTGCCTAAA 60.255 37.037 10.91 0.00 35.75 1.85
421 422 8.289618 CACGTGCAGTTAATATATTGCCTAAAT 58.710 33.333 0.82 0.00 35.75 1.40
422 423 9.496873 ACGTGCAGTTAATATATTGCCTAAATA 57.503 29.630 8.28 0.00 35.75 1.40
435 436 7.928908 ATTGCCTAAATATTAACGTGCATTG 57.071 32.000 0.00 0.00 0.00 2.82
436 437 5.277825 TGCCTAAATATTAACGTGCATTGC 58.722 37.500 0.46 0.46 0.00 3.56
437 438 5.163612 TGCCTAAATATTAACGTGCATTGCA 60.164 36.000 7.38 7.38 35.60 4.08
457 458 4.835199 CACGTGTGCATTTACTAGTACC 57.165 45.455 7.58 0.00 0.00 3.34
458 459 3.302434 CACGTGTGCATTTACTAGTACCG 59.698 47.826 7.58 1.98 0.00 4.02
459 460 3.057315 ACGTGTGCATTTACTAGTACCGT 60.057 43.478 0.91 2.57 0.00 4.83
460 461 4.155826 ACGTGTGCATTTACTAGTACCGTA 59.844 41.667 0.91 0.00 30.60 4.02
461 462 5.094812 CGTGTGCATTTACTAGTACCGTAA 58.905 41.667 0.91 0.00 0.00 3.18
462 463 5.572511 CGTGTGCATTTACTAGTACCGTAAA 59.427 40.000 16.02 16.02 40.07 2.01
463 464 6.089283 CGTGTGCATTTACTAGTACCGTAAAA 59.911 38.462 17.05 0.00 39.45 1.52
464 465 7.359097 CGTGTGCATTTACTAGTACCGTAAAAA 60.359 37.037 17.05 0.00 39.45 1.94
465 466 7.741652 GTGTGCATTTACTAGTACCGTAAAAAC 59.258 37.037 17.05 15.50 39.45 2.43
466 467 7.440556 TGTGCATTTACTAGTACCGTAAAAACA 59.559 33.333 17.05 17.01 39.45 2.83
467 468 7.741652 GTGCATTTACTAGTACCGTAAAAACAC 59.258 37.037 21.75 21.75 39.45 3.32
468 469 7.095271 TGCATTTACTAGTACCGTAAAAACACC 60.095 37.037 17.05 8.42 39.45 4.16
469 470 7.095271 GCATTTACTAGTACCGTAAAAACACCA 60.095 37.037 17.05 0.25 39.45 4.17
470 471 8.938906 CATTTACTAGTACCGTAAAAACACCAT 58.061 33.333 17.05 2.67 39.45 3.55
471 472 8.900983 TTTACTAGTACCGTAAAAACACCATT 57.099 30.769 0.91 0.00 34.82 3.16
472 473 9.988815 TTTACTAGTACCGTAAAAACACCATTA 57.011 29.630 0.91 0.00 34.82 1.90
528 529 4.882842 TCAGTTGTCTAGTGCATAACCA 57.117 40.909 0.00 0.00 0.00 3.67
562 563 1.884235 CCTCCGCATCAAGAATACCC 58.116 55.000 0.00 0.00 0.00 3.69
627 2630 1.992557 ACCCAGGAAAGCCAGACATAA 59.007 47.619 0.00 0.00 36.29 1.90
628 2631 2.378547 ACCCAGGAAAGCCAGACATAAA 59.621 45.455 0.00 0.00 36.29 1.40
629 2632 3.181423 ACCCAGGAAAGCCAGACATAAAA 60.181 43.478 0.00 0.00 36.29 1.52
630 2633 3.831911 CCCAGGAAAGCCAGACATAAAAA 59.168 43.478 0.00 0.00 36.29 1.94
655 2658 6.790232 AAACATCAGAAGAAGGAAAACCAA 57.210 33.333 0.00 0.00 0.00 3.67
729 2732 5.491635 TGTCGAGTCTCTGATATGTCTTG 57.508 43.478 0.00 0.00 0.00 3.02
739 2742 7.222805 GTCTCTGATATGTCTTGCGTTTCATTA 59.777 37.037 0.00 0.00 0.00 1.90
911 2920 1.162698 CGAACTCCTCTCCACGTACA 58.837 55.000 0.00 0.00 0.00 2.90
939 2948 2.908073 GCGTCAACCAAGCACCCAG 61.908 63.158 0.00 0.00 0.00 4.45
998 3039 1.484227 CCGCGCGGATTAACAATCGA 61.484 55.000 44.86 0.00 38.82 3.59
1194 3238 3.735029 GACGTGGTCCGCGAGACT 61.735 66.667 30.66 8.70 45.54 3.24
1406 3450 1.473677 CACAATTCGGGCATCACATGT 59.526 47.619 0.00 0.00 0.00 3.21
1416 3460 4.655963 GGGCATCACATGTAGATTGGTAT 58.344 43.478 0.00 0.00 0.00 2.73
1428 3472 9.392259 CATGTAGATTGGTATCATGATTGCTAT 57.608 33.333 14.65 3.34 38.35 2.97
1490 3534 5.170803 GCAAATTAGGCTAAAACGCGTATTC 59.829 40.000 14.46 0.00 31.28 1.75
1575 3620 6.943899 TTTTTGCAGAAAACCCCCTTATAT 57.056 33.333 0.00 0.00 30.56 0.86
1576 3621 6.943899 TTTTGCAGAAAACCCCCTTATATT 57.056 33.333 0.00 0.00 0.00 1.28
1577 3622 8.437274 TTTTTGCAGAAAACCCCCTTATATTA 57.563 30.769 0.00 0.00 30.56 0.98
1578 3623 8.616799 TTTTGCAGAAAACCCCCTTATATTAT 57.383 30.769 0.00 0.00 0.00 1.28
1579 3624 9.716556 TTTTGCAGAAAACCCCCTTATATTATA 57.283 29.630 0.00 0.00 0.00 0.98
1580 3625 9.890915 TTTGCAGAAAACCCCCTTATATTATAT 57.109 29.630 0.00 0.00 0.00 0.86
1581 3626 8.877864 TGCAGAAAACCCCCTTATATTATATG 57.122 34.615 0.00 0.00 0.00 1.78
1582 3627 8.452868 TGCAGAAAACCCCCTTATATTATATGT 58.547 33.333 0.00 0.00 0.00 2.29
1583 3628 9.969001 GCAGAAAACCCCCTTATATTATATGTA 57.031 33.333 0.00 0.00 0.00 2.29
1603 3648 7.999450 ATGTAATCACAAAAATGCCCAAATT 57.001 28.000 0.00 0.00 38.42 1.82
1604 3649 7.814264 TGTAATCACAAAAATGCCCAAATTT 57.186 28.000 0.00 0.00 0.00 1.82
1605 3650 8.230472 TGTAATCACAAAAATGCCCAAATTTT 57.770 26.923 0.00 0.00 40.60 1.82
1606 3651 8.689972 TGTAATCACAAAAATGCCCAAATTTTT 58.310 25.926 2.60 2.60 45.91 1.94
1635 3680 4.394797 AAAAAGCTCCAGGAGAGGATTT 57.605 40.909 21.89 11.61 43.46 2.17
1636 3681 4.394797 AAAAGCTCCAGGAGAGGATTTT 57.605 40.909 21.89 16.13 43.46 1.82
1637 3682 4.394797 AAAGCTCCAGGAGAGGATTTTT 57.605 40.909 21.89 7.08 43.46 1.94
1657 3702 3.526931 TTTTGTTCGCAATTTCCACCA 57.473 38.095 0.00 0.00 36.91 4.17
1658 3703 3.742433 TTTGTTCGCAATTTCCACCAT 57.258 38.095 0.00 0.00 36.91 3.55
1659 3704 3.296322 TTGTTCGCAATTTCCACCATC 57.704 42.857 0.00 0.00 31.15 3.51
1660 3705 1.198867 TGTTCGCAATTTCCACCATCG 59.801 47.619 0.00 0.00 0.00 3.84
1661 3706 1.466950 GTTCGCAATTTCCACCATCGA 59.533 47.619 0.00 0.00 0.00 3.59
1662 3707 1.814793 TCGCAATTTCCACCATCGAA 58.185 45.000 0.00 0.00 0.00 3.71
1663 3708 2.364632 TCGCAATTTCCACCATCGAAT 58.635 42.857 0.00 0.00 0.00 3.34
1664 3709 2.354510 TCGCAATTTCCACCATCGAATC 59.645 45.455 0.00 0.00 0.00 2.52
1665 3710 2.355756 CGCAATTTCCACCATCGAATCT 59.644 45.455 0.00 0.00 0.00 2.40
1666 3711 3.699067 GCAATTTCCACCATCGAATCTG 58.301 45.455 0.00 0.00 0.00 2.90
1667 3712 3.489738 GCAATTTCCACCATCGAATCTGG 60.490 47.826 1.90 1.90 39.80 3.86
1668 3713 3.931907 ATTTCCACCATCGAATCTGGA 57.068 42.857 10.49 7.31 37.22 3.86
1669 3714 2.691409 TTCCACCATCGAATCTGGAC 57.309 50.000 10.49 0.00 37.22 4.02
1670 3715 1.866015 TCCACCATCGAATCTGGACT 58.134 50.000 10.49 0.00 37.22 3.85
1671 3716 1.482182 TCCACCATCGAATCTGGACTG 59.518 52.381 10.49 0.00 37.22 3.51
1672 3717 1.473965 CCACCATCGAATCTGGACTGG 60.474 57.143 10.49 4.88 37.22 4.00
1673 3718 1.208052 CACCATCGAATCTGGACTGGT 59.792 52.381 10.49 3.90 37.47 4.00
1674 3719 1.909302 ACCATCGAATCTGGACTGGTT 59.091 47.619 10.49 0.00 37.22 3.67
1675 3720 2.305927 ACCATCGAATCTGGACTGGTTT 59.694 45.455 10.49 0.00 37.22 3.27
1676 3721 2.679837 CCATCGAATCTGGACTGGTTTG 59.320 50.000 0.00 0.00 35.70 2.93
1677 3722 3.599343 CATCGAATCTGGACTGGTTTGA 58.401 45.455 0.00 0.00 0.00 2.69
1678 3723 3.762407 TCGAATCTGGACTGGTTTGAA 57.238 42.857 0.00 0.00 0.00 2.69
1679 3724 4.079980 TCGAATCTGGACTGGTTTGAAA 57.920 40.909 0.00 0.00 0.00 2.69
1680 3725 4.651778 TCGAATCTGGACTGGTTTGAAAT 58.348 39.130 0.00 0.00 0.00 2.17
1681 3726 5.070001 TCGAATCTGGACTGGTTTGAAATT 58.930 37.500 0.00 0.00 0.00 1.82
1682 3727 5.534654 TCGAATCTGGACTGGTTTGAAATTT 59.465 36.000 0.00 0.00 0.00 1.82
1683 3728 6.040391 TCGAATCTGGACTGGTTTGAAATTTT 59.960 34.615 0.00 0.00 0.00 1.82
1684 3729 6.363357 CGAATCTGGACTGGTTTGAAATTTTC 59.637 38.462 2.05 2.05 0.00 2.29
1685 3730 5.529581 TCTGGACTGGTTTGAAATTTTCC 57.470 39.130 6.68 0.00 0.00 3.13
1686 3731 4.037446 TCTGGACTGGTTTGAAATTTTCCG 59.963 41.667 6.68 0.00 0.00 4.30
1687 3732 3.057019 GGACTGGTTTGAAATTTTCCGC 58.943 45.455 6.68 0.00 0.00 5.54
1688 3733 3.057019 GACTGGTTTGAAATTTTCCGCC 58.943 45.455 6.68 6.70 0.00 6.13
1689 3734 2.432510 ACTGGTTTGAAATTTTCCGCCA 59.567 40.909 6.68 10.29 0.00 5.69
1690 3735 2.799978 CTGGTTTGAAATTTTCCGCCAC 59.200 45.455 6.68 0.00 0.00 5.01
1691 3736 2.432510 TGGTTTGAAATTTTCCGCCACT 59.567 40.909 6.68 0.00 0.00 4.00
1692 3737 3.118592 TGGTTTGAAATTTTCCGCCACTT 60.119 39.130 6.68 0.00 0.00 3.16
1693 3738 4.099573 TGGTTTGAAATTTTCCGCCACTTA 59.900 37.500 6.68 0.00 0.00 2.24
1694 3739 5.051153 GGTTTGAAATTTTCCGCCACTTAA 58.949 37.500 6.68 0.00 0.00 1.85
1695 3740 5.524281 GGTTTGAAATTTTCCGCCACTTAAA 59.476 36.000 6.68 0.00 0.00 1.52
1696 3741 6.415702 GTTTGAAATTTTCCGCCACTTAAAC 58.584 36.000 6.68 4.69 0.00 2.01
1697 3742 5.263968 TGAAATTTTCCGCCACTTAAACA 57.736 34.783 6.68 0.00 0.00 2.83
1698 3743 5.661458 TGAAATTTTCCGCCACTTAAACAA 58.339 33.333 6.68 0.00 0.00 2.83
1699 3744 6.106673 TGAAATTTTCCGCCACTTAAACAAA 58.893 32.000 6.68 0.00 0.00 2.83
1700 3745 6.763610 TGAAATTTTCCGCCACTTAAACAAAT 59.236 30.769 6.68 0.00 0.00 2.32
1701 3746 7.926555 TGAAATTTTCCGCCACTTAAACAAATA 59.073 29.630 6.68 0.00 0.00 1.40
1702 3747 8.664211 AAATTTTCCGCCACTTAAACAAATAA 57.336 26.923 0.00 0.00 0.00 1.40
1703 3748 8.664211 AATTTTCCGCCACTTAAACAAATAAA 57.336 26.923 0.00 0.00 0.00 1.40
1704 3749 8.840833 ATTTTCCGCCACTTAAACAAATAAAT 57.159 26.923 0.00 0.00 0.00 1.40
1705 3750 9.930693 ATTTTCCGCCACTTAAACAAATAAATA 57.069 25.926 0.00 0.00 0.00 1.40
1706 3751 9.760077 TTTTCCGCCACTTAAACAAATAAATAA 57.240 25.926 0.00 0.00 0.00 1.40
1707 3752 9.760077 TTTCCGCCACTTAAACAAATAAATAAA 57.240 25.926 0.00 0.00 0.00 1.40
1708 3753 9.760077 TTCCGCCACTTAAACAAATAAATAAAA 57.240 25.926 0.00 0.00 0.00 1.52
1709 3754 9.413048 TCCGCCACTTAAACAAATAAATAAAAG 57.587 29.630 0.00 0.00 0.00 2.27
1710 3755 9.413048 CCGCCACTTAAACAAATAAATAAAAGA 57.587 29.630 0.00 0.00 0.00 2.52
1745 3790 3.369385 CGTATTGACGGTGTATCTGACC 58.631 50.000 0.00 0.00 45.63 4.02
1746 3791 3.181494 CGTATTGACGGTGTATCTGACCA 60.181 47.826 0.00 0.00 45.63 4.02
1747 3792 3.973206 ATTGACGGTGTATCTGACCAA 57.027 42.857 0.00 0.00 32.45 3.67
1748 3793 3.973206 TTGACGGTGTATCTGACCAAT 57.027 42.857 0.00 0.00 32.45 3.16
1749 3794 3.245518 TGACGGTGTATCTGACCAATG 57.754 47.619 0.00 0.00 32.45 2.82
1750 3795 2.093711 TGACGGTGTATCTGACCAATGG 60.094 50.000 0.00 0.00 32.45 3.16
1751 3796 1.209504 ACGGTGTATCTGACCAATGGG 59.790 52.381 3.55 0.00 41.29 4.00
1752 3797 1.475034 CGGTGTATCTGACCAATGGGG 60.475 57.143 3.55 0.00 44.81 4.96
1753 3798 1.680338 GTGTATCTGACCAATGGGGC 58.320 55.000 3.55 0.00 45.44 5.80
1754 3799 0.550914 TGTATCTGACCAATGGGGCC 59.449 55.000 3.55 0.00 44.10 5.80
1755 3800 0.178990 GTATCTGACCAATGGGGCCC 60.179 60.000 18.17 18.17 44.10 5.80
1756 3801 1.705002 TATCTGACCAATGGGGCCCG 61.705 60.000 19.83 5.76 44.10 6.13
1903 3949 2.679837 CCATCGAATCTGGACTGGTTTG 59.320 50.000 0.00 0.00 35.70 2.93
1904 3950 3.599343 CATCGAATCTGGACTGGTTTGA 58.401 45.455 0.00 0.00 0.00 2.69
1905 3951 3.762407 TCGAATCTGGACTGGTTTGAA 57.238 42.857 0.00 0.00 0.00 2.69
1906 3952 4.079980 TCGAATCTGGACTGGTTTGAAA 57.920 40.909 0.00 0.00 0.00 2.69
1907 3953 4.651778 TCGAATCTGGACTGGTTTGAAAT 58.348 39.130 0.00 0.00 0.00 2.17
1908 3954 5.070001 TCGAATCTGGACTGGTTTGAAATT 58.930 37.500 0.00 0.00 0.00 1.82
1909 3955 5.534654 TCGAATCTGGACTGGTTTGAAATTT 59.465 36.000 0.00 0.00 0.00 1.82
1910 3956 6.040391 TCGAATCTGGACTGGTTTGAAATTTT 59.960 34.615 0.00 0.00 0.00 1.82
1911 3957 6.363357 CGAATCTGGACTGGTTTGAAATTTTC 59.637 38.462 2.05 2.05 0.00 2.29
1912 3958 5.529581 TCTGGACTGGTTTGAAATTTTCC 57.470 39.130 6.68 0.00 0.00 3.13
1913 3959 4.037446 TCTGGACTGGTTTGAAATTTTCCG 59.963 41.667 6.68 0.00 0.00 4.30
1914 3960 3.057019 GGACTGGTTTGAAATTTTCCGC 58.943 45.455 6.68 0.00 0.00 5.54
1915 3961 3.057019 GACTGGTTTGAAATTTTCCGCC 58.943 45.455 6.68 6.70 0.00 6.13
1916 3962 2.432510 ACTGGTTTGAAATTTTCCGCCA 59.567 40.909 6.68 10.29 0.00 5.69
1917 3963 2.799978 CTGGTTTGAAATTTTCCGCCAC 59.200 45.455 6.68 0.00 0.00 5.01
1918 3964 2.432510 TGGTTTGAAATTTTCCGCCACT 59.567 40.909 6.68 0.00 0.00 4.00
1919 3965 3.118592 TGGTTTGAAATTTTCCGCCACTT 60.119 39.130 6.68 0.00 0.00 3.16
1920 3966 4.099573 TGGTTTGAAATTTTCCGCCACTTA 59.900 37.500 6.68 0.00 0.00 2.24
1921 3967 5.051153 GGTTTGAAATTTTCCGCCACTTAA 58.949 37.500 6.68 0.00 0.00 1.85
1922 3968 5.524281 GGTTTGAAATTTTCCGCCACTTAAA 59.476 36.000 6.68 0.00 0.00 1.52
1923 3969 6.415702 GTTTGAAATTTTCCGCCACTTAAAC 58.584 36.000 6.68 4.69 0.00 2.01
1924 3970 5.263968 TGAAATTTTCCGCCACTTAAACA 57.736 34.783 6.68 0.00 0.00 2.83
1925 3971 5.661458 TGAAATTTTCCGCCACTTAAACAA 58.339 33.333 6.68 0.00 0.00 2.83
1926 3972 6.106673 TGAAATTTTCCGCCACTTAAACAAA 58.893 32.000 6.68 0.00 0.00 2.83
1927 3973 6.763610 TGAAATTTTCCGCCACTTAAACAAAT 59.236 30.769 6.68 0.00 0.00 2.32
1928 3974 7.926555 TGAAATTTTCCGCCACTTAAACAAATA 59.073 29.630 6.68 0.00 0.00 1.40
1929 3975 8.664211 AAATTTTCCGCCACTTAAACAAATAA 57.336 26.923 0.00 0.00 0.00 1.40
1930 3976 8.664211 AATTTTCCGCCACTTAAACAAATAAA 57.336 26.923 0.00 0.00 0.00 1.40
1931 3977 8.840833 ATTTTCCGCCACTTAAACAAATAAAT 57.159 26.923 0.00 0.00 0.00 1.40
1932 3978 9.930693 ATTTTCCGCCACTTAAACAAATAAATA 57.069 25.926 0.00 0.00 0.00 1.40
1933 3979 9.760077 TTTTCCGCCACTTAAACAAATAAATAA 57.240 25.926 0.00 0.00 0.00 1.40
1934 3980 9.760077 TTTCCGCCACTTAAACAAATAAATAAA 57.240 25.926 0.00 0.00 0.00 1.40
1935 3981 9.760077 TTCCGCCACTTAAACAAATAAATAAAA 57.240 25.926 0.00 0.00 0.00 1.52
1936 3982 9.413048 TCCGCCACTTAAACAAATAAATAAAAG 57.587 29.630 0.00 0.00 0.00 2.27
1937 3983 9.413048 CCGCCACTTAAACAAATAAATAAAAGA 57.587 29.630 0.00 0.00 0.00 2.52
1972 4018 3.369385 CGTATTGACGGTGTATCTGACC 58.631 50.000 0.00 0.00 45.63 4.02
1978 4024 3.989104 GGTGTATCTGACCGATGGG 57.011 57.895 0.00 0.00 40.11 4.00
1979 4025 0.393077 GGTGTATCTGACCGATGGGG 59.607 60.000 0.00 0.00 43.62 4.96
1980 4026 0.249911 GTGTATCTGACCGATGGGGC 60.250 60.000 0.00 0.00 44.16 5.80
1981 4027 1.371558 GTATCTGACCGATGGGGCC 59.628 63.158 0.00 0.00 42.67 5.80
1982 4028 1.841556 TATCTGACCGATGGGGCCC 60.842 63.158 18.17 18.17 42.67 5.80
2027 4073 4.615588 TTTTGCAGAAAACCCCCTTATG 57.384 40.909 0.00 0.00 0.00 1.90
2028 4074 2.990740 TGCAGAAAACCCCCTTATGT 57.009 45.000 0.00 0.00 0.00 2.29
2029 4075 3.252554 TGCAGAAAACCCCCTTATGTT 57.747 42.857 0.00 0.00 0.00 2.71
2030 4076 4.390129 TGCAGAAAACCCCCTTATGTTA 57.610 40.909 0.00 0.00 0.00 2.41
2031 4077 4.941713 TGCAGAAAACCCCCTTATGTTAT 58.058 39.130 0.00 0.00 0.00 1.89
2032 4078 6.080969 TGCAGAAAACCCCCTTATGTTATA 57.919 37.500 0.00 0.00 0.00 0.98
2033 4079 6.678547 TGCAGAAAACCCCCTTATGTTATAT 58.321 36.000 0.00 0.00 0.00 0.86
2034 4080 6.549364 TGCAGAAAACCCCCTTATGTTATATG 59.451 38.462 0.00 0.00 0.00 1.78
2035 4081 6.549736 GCAGAAAACCCCCTTATGTTATATGT 59.450 38.462 0.00 0.00 0.00 2.29
2036 4082 7.722285 GCAGAAAACCCCCTTATGTTATATGTA 59.278 37.037 0.00 0.00 0.00 2.29
2037 4083 9.635404 CAGAAAACCCCCTTATGTTATATGTAA 57.365 33.333 0.00 0.00 0.00 2.41
2041 4087 9.582648 AAACCCCCTTATGTTATATGTAATCAC 57.417 33.333 0.00 0.00 0.00 3.06
2042 4088 8.282801 ACCCCCTTATGTTATATGTAATCACA 57.717 34.615 0.00 0.00 39.52 3.58
2043 4089 8.729047 ACCCCCTTATGTTATATGTAATCACAA 58.271 33.333 0.00 0.00 38.42 3.33
2044 4090 9.581289 CCCCCTTATGTTATATGTAATCACAAA 57.419 33.333 0.00 0.00 38.42 2.83
2051 4097 9.762933 ATGTTATATGTAATCACAAAAATGCCC 57.237 29.630 0.00 0.00 38.42 5.36
2052 4098 8.753133 TGTTATATGTAATCACAAAAATGCCCA 58.247 29.630 0.00 0.00 38.42 5.36
2053 4099 9.593134 GTTATATGTAATCACAAAAATGCCCAA 57.407 29.630 0.00 0.00 38.42 4.12
2056 4102 7.999450 ATGTAATCACAAAAATGCCCAAATT 57.001 28.000 0.00 0.00 38.42 1.82
2057 4103 7.814264 TGTAATCACAAAAATGCCCAAATTT 57.186 28.000 0.00 0.00 0.00 1.82
2058 4104 8.230472 TGTAATCACAAAAATGCCCAAATTTT 57.770 26.923 0.00 0.00 40.60 1.82
2059 4105 8.689972 TGTAATCACAAAAATGCCCAAATTTTT 58.310 25.926 2.60 2.60 45.91 1.94
2088 4134 4.394797 AAAAAGCTCCAGGAGAGGATTT 57.605 40.909 21.89 11.61 43.46 2.17
2089 4135 4.394797 AAAAGCTCCAGGAGAGGATTTT 57.605 40.909 21.89 16.13 43.46 1.82
2090 4136 4.394797 AAAGCTCCAGGAGAGGATTTTT 57.605 40.909 21.89 7.08 43.46 1.94
2110 4156 3.526931 TTTTGTTCGCAATTTCCACCA 57.473 38.095 0.00 0.00 36.91 4.17
2111 4157 3.742433 TTTGTTCGCAATTTCCACCAT 57.258 38.095 0.00 0.00 36.91 3.55
2112 4158 3.296322 TTGTTCGCAATTTCCACCATC 57.704 42.857 0.00 0.00 31.15 3.51
2113 4159 1.198867 TGTTCGCAATTTCCACCATCG 59.801 47.619 0.00 0.00 0.00 3.84
2114 4160 1.466950 GTTCGCAATTTCCACCATCGA 59.533 47.619 0.00 0.00 0.00 3.59
2115 4161 1.814793 TCGCAATTTCCACCATCGAA 58.185 45.000 0.00 0.00 0.00 3.71
2116 4162 2.364632 TCGCAATTTCCACCATCGAAT 58.635 42.857 0.00 0.00 0.00 3.34
2117 4163 2.354510 TCGCAATTTCCACCATCGAATC 59.645 45.455 0.00 0.00 0.00 2.52
2118 4164 2.355756 CGCAATTTCCACCATCGAATCT 59.644 45.455 0.00 0.00 0.00 2.40
2119 4165 3.699067 GCAATTTCCACCATCGAATCTG 58.301 45.455 0.00 0.00 0.00 2.90
2120 4166 3.489738 GCAATTTCCACCATCGAATCTGG 60.490 47.826 1.90 1.90 39.80 3.86
2121 4167 3.931907 ATTTCCACCATCGAATCTGGA 57.068 42.857 10.49 7.31 37.22 3.86
2122 4168 2.691409 TTCCACCATCGAATCTGGAC 57.309 50.000 10.49 0.00 37.22 4.02
2123 4169 1.866015 TCCACCATCGAATCTGGACT 58.134 50.000 10.49 0.00 37.22 3.85
2124 4170 1.482182 TCCACCATCGAATCTGGACTG 59.518 52.381 10.49 0.00 37.22 3.51
2125 4171 1.473965 CCACCATCGAATCTGGACTGG 60.474 57.143 10.49 4.88 37.22 4.00
2126 4172 1.208052 CACCATCGAATCTGGACTGGT 59.792 52.381 10.49 3.90 37.47 4.00
2127 4173 1.909302 ACCATCGAATCTGGACTGGTT 59.091 47.619 10.49 0.00 37.22 3.67
2128 4174 2.305927 ACCATCGAATCTGGACTGGTTT 59.694 45.455 10.49 0.00 37.22 3.27
2158 4211 8.664211 TTTTCCGCCACTTAAACAAATAAATT 57.336 26.923 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.645059 GATAAGCAACTATGTGATAGCAAGATA 57.355 33.333 0.00 0.00 36.30 1.98
2 3 8.373981 AGATAAGCAACTATGTGATAGCAAGAT 58.626 33.333 0.00 0.00 36.30 2.40
3 4 7.730084 AGATAAGCAACTATGTGATAGCAAGA 58.270 34.615 0.00 0.00 36.30 3.02
4 5 7.959689 AGATAAGCAACTATGTGATAGCAAG 57.040 36.000 0.00 0.00 36.30 4.01
5 6 7.254898 GCAAGATAAGCAACTATGTGATAGCAA 60.255 37.037 0.00 0.00 36.30 3.91
6 7 6.203530 GCAAGATAAGCAACTATGTGATAGCA 59.796 38.462 0.00 0.00 36.30 3.49
7 8 6.426328 AGCAAGATAAGCAACTATGTGATAGC 59.574 38.462 0.00 0.00 36.30 2.97
8 9 7.959689 AGCAAGATAAGCAACTATGTGATAG 57.040 36.000 0.00 0.00 38.81 2.08
9 10 9.481340 CTAAGCAAGATAAGCAACTATGTGATA 57.519 33.333 0.00 0.00 0.00 2.15
10 11 7.041508 GCTAAGCAAGATAAGCAACTATGTGAT 60.042 37.037 0.00 0.00 35.05 3.06
11 12 6.258727 GCTAAGCAAGATAAGCAACTATGTGA 59.741 38.462 0.00 0.00 35.05 3.58
12 13 6.037500 TGCTAAGCAAGATAAGCAACTATGTG 59.962 38.462 0.00 0.00 41.74 3.21
13 14 6.115446 TGCTAAGCAAGATAAGCAACTATGT 58.885 36.000 0.00 0.00 41.74 2.29
14 15 6.609237 TGCTAAGCAAGATAAGCAACTATG 57.391 37.500 0.00 0.00 41.74 2.23
21 22 7.020914 ACAACTTATGCTAAGCAAGATAAGC 57.979 36.000 0.00 0.00 43.62 3.09
22 23 7.912250 CCAACAACTTATGCTAAGCAAGATAAG 59.088 37.037 0.00 0.00 43.62 1.73
23 24 7.393234 ACCAACAACTTATGCTAAGCAAGATAA 59.607 33.333 0.00 0.00 43.62 1.75
24 25 6.884295 ACCAACAACTTATGCTAAGCAAGATA 59.116 34.615 0.00 0.00 43.62 1.98
25 26 5.711976 ACCAACAACTTATGCTAAGCAAGAT 59.288 36.000 0.00 0.00 43.62 2.40
26 27 5.048782 CACCAACAACTTATGCTAAGCAAGA 60.049 40.000 0.00 0.00 43.62 3.02
27 28 5.156355 CACCAACAACTTATGCTAAGCAAG 58.844 41.667 0.00 0.00 43.62 4.01
28 29 4.558496 GCACCAACAACTTATGCTAAGCAA 60.558 41.667 0.00 0.00 43.62 3.91
29 30 3.057596 GCACCAACAACTTATGCTAAGCA 60.058 43.478 0.00 0.00 44.86 3.91
30 31 3.057596 TGCACCAACAACTTATGCTAAGC 60.058 43.478 0.00 0.00 37.20 3.09
31 32 4.023279 TGTGCACCAACAACTTATGCTAAG 60.023 41.667 15.69 2.55 37.20 2.18
32 33 3.885901 TGTGCACCAACAACTTATGCTAA 59.114 39.130 15.69 0.00 37.20 3.09
33 34 3.481453 TGTGCACCAACAACTTATGCTA 58.519 40.909 15.69 0.00 37.20 3.49
34 35 2.305928 TGTGCACCAACAACTTATGCT 58.694 42.857 15.69 0.00 37.20 3.79
35 36 2.791383 TGTGCACCAACAACTTATGC 57.209 45.000 15.69 0.00 36.81 3.14
36 37 4.458989 ACCTATGTGCACCAACAACTTATG 59.541 41.667 15.69 0.00 32.81 1.90
37 38 4.458989 CACCTATGTGCACCAACAACTTAT 59.541 41.667 15.69 0.00 35.31 1.73
38 39 3.818210 CACCTATGTGCACCAACAACTTA 59.182 43.478 15.69 0.00 35.31 2.24
39 40 2.622942 CACCTATGTGCACCAACAACTT 59.377 45.455 15.69 0.00 35.31 2.66
40 41 2.158682 TCACCTATGTGCACCAACAACT 60.159 45.455 15.69 0.00 42.46 3.16
41 42 2.226330 TCACCTATGTGCACCAACAAC 58.774 47.619 15.69 0.00 42.46 3.32
42 43 2.158682 ACTCACCTATGTGCACCAACAA 60.159 45.455 15.69 0.00 42.46 2.83
43 44 1.419762 ACTCACCTATGTGCACCAACA 59.580 47.619 15.69 0.00 42.46 3.33
44 45 2.076863 GACTCACCTATGTGCACCAAC 58.923 52.381 15.69 0.00 42.46 3.77
45 46 1.977854 AGACTCACCTATGTGCACCAA 59.022 47.619 15.69 0.65 42.46 3.67
46 47 1.644509 AGACTCACCTATGTGCACCA 58.355 50.000 15.69 2.61 42.46 4.17
47 48 2.761208 ACTAGACTCACCTATGTGCACC 59.239 50.000 15.69 0.00 42.46 5.01
48 49 4.177026 CAACTAGACTCACCTATGTGCAC 58.823 47.826 10.75 10.75 42.46 4.57
49 50 3.832490 ACAACTAGACTCACCTATGTGCA 59.168 43.478 0.00 0.00 42.46 4.57
50 51 4.457834 ACAACTAGACTCACCTATGTGC 57.542 45.455 0.00 0.00 42.46 4.57
51 52 5.784177 ACAACAACTAGACTCACCTATGTG 58.216 41.667 0.00 0.00 44.18 3.21
52 53 6.153000 CCTACAACAACTAGACTCACCTATGT 59.847 42.308 0.00 0.00 0.00 2.29
53 54 6.153000 ACCTACAACAACTAGACTCACCTATG 59.847 42.308 0.00 0.00 0.00 2.23
54 55 6.254522 ACCTACAACAACTAGACTCACCTAT 58.745 40.000 0.00 0.00 0.00 2.57
55 56 5.638133 ACCTACAACAACTAGACTCACCTA 58.362 41.667 0.00 0.00 0.00 3.08
56 57 4.481072 ACCTACAACAACTAGACTCACCT 58.519 43.478 0.00 0.00 0.00 4.00
57 58 4.868314 ACCTACAACAACTAGACTCACC 57.132 45.455 0.00 0.00 0.00 4.02
58 59 6.537660 ACAAAACCTACAACAACTAGACTCAC 59.462 38.462 0.00 0.00 0.00 3.51
59 60 6.537301 CACAAAACCTACAACAACTAGACTCA 59.463 38.462 0.00 0.00 0.00 3.41
60 61 6.511282 GCACAAAACCTACAACAACTAGACTC 60.511 42.308 0.00 0.00 0.00 3.36
61 62 5.296035 GCACAAAACCTACAACAACTAGACT 59.704 40.000 0.00 0.00 0.00 3.24
62 63 5.296035 AGCACAAAACCTACAACAACTAGAC 59.704 40.000 0.00 0.00 0.00 2.59
63 64 5.433526 AGCACAAAACCTACAACAACTAGA 58.566 37.500 0.00 0.00 0.00 2.43
64 65 5.751243 AGCACAAAACCTACAACAACTAG 57.249 39.130 0.00 0.00 0.00 2.57
65 66 5.648526 TCAAGCACAAAACCTACAACAACTA 59.351 36.000 0.00 0.00 0.00 2.24
66 67 4.461081 TCAAGCACAAAACCTACAACAACT 59.539 37.500 0.00 0.00 0.00 3.16
67 68 4.561213 GTCAAGCACAAAACCTACAACAAC 59.439 41.667 0.00 0.00 0.00 3.32
68 69 4.218635 TGTCAAGCACAAAACCTACAACAA 59.781 37.500 0.00 0.00 29.30 2.83
69 70 3.759086 TGTCAAGCACAAAACCTACAACA 59.241 39.130 0.00 0.00 29.30 3.33
70 71 4.364415 TGTCAAGCACAAAACCTACAAC 57.636 40.909 0.00 0.00 29.30 3.32
80 81 4.640789 ACGGTTAATTTGTCAAGCACAA 57.359 36.364 0.00 0.00 43.68 3.33
81 82 4.640789 AACGGTTAATTTGTCAAGCACA 57.359 36.364 0.00 0.00 0.00 4.57
82 83 5.151389 CCTAACGGTTAATTTGTCAAGCAC 58.849 41.667 1.79 0.00 0.00 4.40
83 84 4.822896 ACCTAACGGTTAATTTGTCAAGCA 59.177 37.500 1.79 0.00 42.13 3.91
84 85 5.366829 ACCTAACGGTTAATTTGTCAAGC 57.633 39.130 1.79 0.00 42.13 4.01
98 99 4.142556 ACAAATGCGGAATAAACCTAACGG 60.143 41.667 0.00 0.00 0.00 4.44
99 100 4.976987 ACAAATGCGGAATAAACCTAACG 58.023 39.130 0.00 0.00 0.00 3.18
100 101 6.383415 TGAACAAATGCGGAATAAACCTAAC 58.617 36.000 0.00 0.00 0.00 2.34
101 102 6.576662 TGAACAAATGCGGAATAAACCTAA 57.423 33.333 0.00 0.00 0.00 2.69
102 103 6.576662 TTGAACAAATGCGGAATAAACCTA 57.423 33.333 0.00 0.00 0.00 3.08
103 104 5.461032 TTGAACAAATGCGGAATAAACCT 57.539 34.783 0.00 0.00 0.00 3.50
104 105 4.091365 GCTTGAACAAATGCGGAATAAACC 59.909 41.667 0.00 0.00 0.00 3.27
105 106 4.091365 GGCTTGAACAAATGCGGAATAAAC 59.909 41.667 0.00 0.00 0.00 2.01
106 107 4.021544 AGGCTTGAACAAATGCGGAATAAA 60.022 37.500 0.00 0.00 0.00 1.40
107 108 3.509575 AGGCTTGAACAAATGCGGAATAA 59.490 39.130 0.00 0.00 0.00 1.40
108 109 3.088532 AGGCTTGAACAAATGCGGAATA 58.911 40.909 0.00 0.00 0.00 1.75
109 110 1.895131 AGGCTTGAACAAATGCGGAAT 59.105 42.857 0.00 0.00 0.00 3.01
110 111 1.269448 GAGGCTTGAACAAATGCGGAA 59.731 47.619 0.00 0.00 0.00 4.30
111 112 0.881118 GAGGCTTGAACAAATGCGGA 59.119 50.000 0.00 0.00 0.00 5.54
112 113 0.883833 AGAGGCTTGAACAAATGCGG 59.116 50.000 0.00 0.00 0.00 5.69
113 114 2.159517 GGTAGAGGCTTGAACAAATGCG 60.160 50.000 0.00 0.00 0.00 4.73
114 115 2.159517 CGGTAGAGGCTTGAACAAATGC 60.160 50.000 0.00 0.00 0.00 3.56
115 116 3.074412 ACGGTAGAGGCTTGAACAAATG 58.926 45.455 0.00 0.00 0.00 2.32
116 117 3.418684 ACGGTAGAGGCTTGAACAAAT 57.581 42.857 0.00 0.00 0.00 2.32
117 118 2.922740 ACGGTAGAGGCTTGAACAAA 57.077 45.000 0.00 0.00 0.00 2.83
118 119 4.546829 ATTACGGTAGAGGCTTGAACAA 57.453 40.909 0.00 0.00 0.00 2.83
119 120 4.546829 AATTACGGTAGAGGCTTGAACA 57.453 40.909 0.00 0.00 0.00 3.18
120 121 7.549615 AAATAATTACGGTAGAGGCTTGAAC 57.450 36.000 0.00 0.00 0.00 3.18
121 122 9.669887 TTAAAATAATTACGGTAGAGGCTTGAA 57.330 29.630 0.00 0.00 0.00 2.69
122 123 9.669887 TTTAAAATAATTACGGTAGAGGCTTGA 57.330 29.630 0.00 0.00 0.00 3.02
125 126 8.606602 CGTTTTAAAATAATTACGGTAGAGGCT 58.393 33.333 3.52 0.00 0.00 4.58
126 127 7.374228 GCGTTTTAAAATAATTACGGTAGAGGC 59.626 37.037 3.52 0.00 0.00 4.70
127 128 7.852454 GGCGTTTTAAAATAATTACGGTAGAGG 59.148 37.037 3.52 0.00 0.00 3.69
128 129 8.606602 AGGCGTTTTAAAATAATTACGGTAGAG 58.393 33.333 3.52 0.00 0.00 2.43
129 130 8.491331 AGGCGTTTTAAAATAATTACGGTAGA 57.509 30.769 3.52 0.00 0.00 2.59
132 133 9.720667 GAATAGGCGTTTTAAAATAATTACGGT 57.279 29.630 3.52 0.00 0.00 4.83
133 134 9.719279 TGAATAGGCGTTTTAAAATAATTACGG 57.281 29.630 3.52 0.00 0.00 4.02
137 138 7.982919 GGGGTGAATAGGCGTTTTAAAATAATT 59.017 33.333 3.52 0.88 0.00 1.40
138 139 7.418139 GGGGGTGAATAGGCGTTTTAAAATAAT 60.418 37.037 3.52 0.00 0.00 1.28
139 140 6.127394 GGGGGTGAATAGGCGTTTTAAAATAA 60.127 38.462 3.52 0.00 0.00 1.40
140 141 5.360429 GGGGGTGAATAGGCGTTTTAAAATA 59.640 40.000 3.52 0.00 0.00 1.40
141 142 4.160814 GGGGGTGAATAGGCGTTTTAAAAT 59.839 41.667 3.52 0.00 0.00 1.82
142 143 3.510753 GGGGGTGAATAGGCGTTTTAAAA 59.489 43.478 0.00 0.00 0.00 1.52
143 144 3.090790 GGGGGTGAATAGGCGTTTTAAA 58.909 45.455 0.00 0.00 0.00 1.52
144 145 2.725637 GGGGGTGAATAGGCGTTTTAA 58.274 47.619 0.00 0.00 0.00 1.52
145 146 2.423446 GGGGGTGAATAGGCGTTTTA 57.577 50.000 0.00 0.00 0.00 1.52
146 147 3.276281 GGGGGTGAATAGGCGTTTT 57.724 52.632 0.00 0.00 0.00 2.43
163 164 1.043116 TGTGGATGACGCCTAGAGGG 61.043 60.000 0.00 0.00 35.18 4.30
164 165 0.824109 TTGTGGATGACGCCTAGAGG 59.176 55.000 0.00 0.00 38.53 3.69
165 166 2.363680 AGATTGTGGATGACGCCTAGAG 59.636 50.000 0.00 0.00 0.00 2.43
166 167 2.388735 AGATTGTGGATGACGCCTAGA 58.611 47.619 0.00 0.00 0.00 2.43
167 168 2.898729 AGATTGTGGATGACGCCTAG 57.101 50.000 0.00 0.00 0.00 3.02
168 169 3.055458 TGAAAGATTGTGGATGACGCCTA 60.055 43.478 0.00 0.00 0.00 3.93
169 170 2.290260 TGAAAGATTGTGGATGACGCCT 60.290 45.455 0.00 0.00 0.00 5.52
170 171 2.083774 TGAAAGATTGTGGATGACGCC 58.916 47.619 0.00 0.00 0.00 5.68
171 172 2.159517 GGTGAAAGATTGTGGATGACGC 60.160 50.000 0.00 0.00 0.00 5.19
172 173 3.073678 TGGTGAAAGATTGTGGATGACG 58.926 45.455 0.00 0.00 0.00 4.35
173 174 5.649782 AATGGTGAAAGATTGTGGATGAC 57.350 39.130 0.00 0.00 0.00 3.06
174 175 5.887598 CCTAATGGTGAAAGATTGTGGATGA 59.112 40.000 0.00 0.00 0.00 2.92
175 176 5.653769 ACCTAATGGTGAAAGATTGTGGATG 59.346 40.000 0.00 0.00 46.51 3.51
176 177 5.831103 ACCTAATGGTGAAAGATTGTGGAT 58.169 37.500 0.00 0.00 46.51 3.41
177 178 5.255397 ACCTAATGGTGAAAGATTGTGGA 57.745 39.130 0.00 0.00 46.51 4.02
216 217 9.991906 CTTCGGGTCTTTTTATATTGGTATAGA 57.008 33.333 0.00 0.00 0.00 1.98
217 218 9.216117 CCTTCGGGTCTTTTTATATTGGTATAG 57.784 37.037 0.00 0.00 0.00 1.31
218 219 8.158789 CCCTTCGGGTCTTTTTATATTGGTATA 58.841 37.037 0.00 0.00 38.25 1.47
219 220 7.002276 CCCTTCGGGTCTTTTTATATTGGTAT 58.998 38.462 0.00 0.00 38.25 2.73
220 221 6.358991 CCCTTCGGGTCTTTTTATATTGGTA 58.641 40.000 0.00 0.00 38.25 3.25
221 222 5.198207 CCCTTCGGGTCTTTTTATATTGGT 58.802 41.667 0.00 0.00 38.25 3.67
222 223 4.583073 CCCCTTCGGGTCTTTTTATATTGG 59.417 45.833 0.00 0.00 45.50 3.16
223 224 5.767816 CCCCTTCGGGTCTTTTTATATTG 57.232 43.478 0.00 0.00 45.50 1.90
237 238 1.123928 AGTTAGATCTGCCCCTTCGG 58.876 55.000 5.18 0.00 0.00 4.30
238 239 1.757118 TCAGTTAGATCTGCCCCTTCG 59.243 52.381 5.18 0.00 35.63 3.79
249 250 3.234353 TGATGGCCGAGATCAGTTAGAT 58.766 45.455 0.00 0.00 40.48 1.98
250 251 2.666317 TGATGGCCGAGATCAGTTAGA 58.334 47.619 0.00 0.00 0.00 2.10
251 252 3.459232 TTGATGGCCGAGATCAGTTAG 57.541 47.619 0.00 0.00 31.52 2.34
252 253 3.197766 AGTTTGATGGCCGAGATCAGTTA 59.802 43.478 0.00 0.00 31.52 2.24
253 254 2.026822 AGTTTGATGGCCGAGATCAGTT 60.027 45.455 0.00 0.00 31.52 3.16
254 255 1.556911 AGTTTGATGGCCGAGATCAGT 59.443 47.619 0.00 0.00 31.52 3.41
255 256 2.322355 AGTTTGATGGCCGAGATCAG 57.678 50.000 0.00 0.00 31.52 2.90
256 257 3.197766 ACTTAGTTTGATGGCCGAGATCA 59.802 43.478 0.00 0.00 0.00 2.92
257 258 3.798202 ACTTAGTTTGATGGCCGAGATC 58.202 45.455 0.00 0.00 0.00 2.75
258 259 3.197766 TGACTTAGTTTGATGGCCGAGAT 59.802 43.478 0.00 0.00 0.00 2.75
259 260 2.565391 TGACTTAGTTTGATGGCCGAGA 59.435 45.455 0.00 0.00 0.00 4.04
260 261 2.972625 TGACTTAGTTTGATGGCCGAG 58.027 47.619 0.00 0.00 0.00 4.63
261 262 3.410631 TTGACTTAGTTTGATGGCCGA 57.589 42.857 0.00 0.00 0.00 5.54
262 263 3.065371 GGATTGACTTAGTTTGATGGCCG 59.935 47.826 0.00 0.00 0.00 6.13
263 264 4.016444 TGGATTGACTTAGTTTGATGGCC 58.984 43.478 0.00 0.00 0.00 5.36
264 265 5.402398 GTTGGATTGACTTAGTTTGATGGC 58.598 41.667 0.00 0.00 0.00 4.40
265 266 5.411361 TCGTTGGATTGACTTAGTTTGATGG 59.589 40.000 0.00 0.00 0.00 3.51
266 267 6.307155 GTCGTTGGATTGACTTAGTTTGATG 58.693 40.000 0.00 0.00 32.37 3.07
267 268 5.411669 GGTCGTTGGATTGACTTAGTTTGAT 59.588 40.000 0.00 0.00 35.45 2.57
268 269 4.753107 GGTCGTTGGATTGACTTAGTTTGA 59.247 41.667 0.00 0.00 35.45 2.69
269 270 4.755123 AGGTCGTTGGATTGACTTAGTTTG 59.245 41.667 0.00 0.00 35.45 2.93
270 271 4.969484 AGGTCGTTGGATTGACTTAGTTT 58.031 39.130 0.00 0.00 35.45 2.66
271 272 4.618920 AGGTCGTTGGATTGACTTAGTT 57.381 40.909 0.00 0.00 35.45 2.24
272 273 5.014858 TCTAGGTCGTTGGATTGACTTAGT 58.985 41.667 10.13 0.00 42.29 2.24
273 274 5.125739 AGTCTAGGTCGTTGGATTGACTTAG 59.874 44.000 5.46 5.46 42.75 2.18
274 275 5.014858 AGTCTAGGTCGTTGGATTGACTTA 58.985 41.667 0.00 0.00 35.45 2.24
275 276 3.833070 AGTCTAGGTCGTTGGATTGACTT 59.167 43.478 0.00 0.00 35.45 3.01
276 277 3.193691 CAGTCTAGGTCGTTGGATTGACT 59.806 47.826 0.00 0.00 35.45 3.41
277 278 3.512680 CAGTCTAGGTCGTTGGATTGAC 58.487 50.000 0.00 0.00 0.00 3.18
278 279 2.094182 GCAGTCTAGGTCGTTGGATTGA 60.094 50.000 0.00 0.00 0.00 2.57
279 280 2.093973 AGCAGTCTAGGTCGTTGGATTG 60.094 50.000 0.00 0.00 0.00 2.67
280 281 2.166664 GAGCAGTCTAGGTCGTTGGATT 59.833 50.000 0.00 0.00 0.00 3.01
281 282 1.751924 GAGCAGTCTAGGTCGTTGGAT 59.248 52.381 0.00 0.00 0.00 3.41
282 283 1.174783 GAGCAGTCTAGGTCGTTGGA 58.825 55.000 0.00 0.00 0.00 3.53
283 284 0.173708 GGAGCAGTCTAGGTCGTTGG 59.826 60.000 0.00 0.00 36.90 3.77
284 285 0.888619 TGGAGCAGTCTAGGTCGTTG 59.111 55.000 0.00 0.00 36.90 4.10
285 286 1.629043 TTGGAGCAGTCTAGGTCGTT 58.371 50.000 0.00 0.00 36.90 3.85
286 287 1.478510 CATTGGAGCAGTCTAGGTCGT 59.521 52.381 0.00 0.00 36.90 4.34
287 288 1.202463 CCATTGGAGCAGTCTAGGTCG 60.202 57.143 0.00 0.00 36.90 4.79
288 289 1.474143 GCCATTGGAGCAGTCTAGGTC 60.474 57.143 6.95 0.00 35.36 3.85
289 290 0.543749 GCCATTGGAGCAGTCTAGGT 59.456 55.000 6.95 0.00 0.00 3.08
290 291 0.531532 CGCCATTGGAGCAGTCTAGG 60.532 60.000 6.95 0.00 0.00 3.02
291 292 0.461548 TCGCCATTGGAGCAGTCTAG 59.538 55.000 6.95 0.00 0.00 2.43
292 293 0.461548 CTCGCCATTGGAGCAGTCTA 59.538 55.000 6.95 0.00 0.00 2.59
293 294 1.220206 CTCGCCATTGGAGCAGTCT 59.780 57.895 6.95 0.00 0.00 3.24
294 295 3.805267 CTCGCCATTGGAGCAGTC 58.195 61.111 6.95 0.00 0.00 3.51
299 300 1.135575 GTTGAAAGCTCGCCATTGGAG 60.136 52.381 6.95 2.84 34.62 3.86
300 301 0.881118 GTTGAAAGCTCGCCATTGGA 59.119 50.000 6.95 0.00 0.00 3.53
301 302 0.597568 TGTTGAAAGCTCGCCATTGG 59.402 50.000 0.00 0.00 0.00 3.16
302 303 2.256174 CATGTTGAAAGCTCGCCATTG 58.744 47.619 0.00 0.00 0.00 2.82
303 304 1.888512 ACATGTTGAAAGCTCGCCATT 59.111 42.857 0.00 0.00 0.00 3.16
304 305 1.538047 ACATGTTGAAAGCTCGCCAT 58.462 45.000 0.00 0.00 0.00 4.40
305 306 1.317613 AACATGTTGAAAGCTCGCCA 58.682 45.000 11.07 0.00 0.00 5.69
306 307 2.422276 AAACATGTTGAAAGCTCGCC 57.578 45.000 12.82 0.00 0.00 5.54
307 308 3.357823 CGTTAAACATGTTGAAAGCTCGC 59.642 43.478 12.82 0.00 0.00 5.03
308 309 4.375698 CACGTTAAACATGTTGAAAGCTCG 59.624 41.667 18.38 15.30 0.00 5.03
309 310 4.146443 GCACGTTAAACATGTTGAAAGCTC 59.854 41.667 18.38 8.95 0.00 4.09
310 311 4.041723 GCACGTTAAACATGTTGAAAGCT 58.958 39.130 18.38 2.88 0.00 3.74
311 312 3.794028 TGCACGTTAAACATGTTGAAAGC 59.206 39.130 18.38 17.34 0.00 3.51
312 313 5.940603 TTGCACGTTAAACATGTTGAAAG 57.059 34.783 17.23 17.23 0.00 2.62
313 314 6.893958 AATTGCACGTTAAACATGTTGAAA 57.106 29.167 12.82 7.18 0.00 2.69
314 315 7.197017 ACTAATTGCACGTTAAACATGTTGAA 58.803 30.769 12.82 8.25 0.00 2.69
315 316 6.730175 ACTAATTGCACGTTAAACATGTTGA 58.270 32.000 12.82 0.38 0.00 3.18
316 317 6.984740 ACTAATTGCACGTTAAACATGTTG 57.015 33.333 12.82 1.67 0.00 3.33
317 318 8.508062 TGATACTAATTGCACGTTAAACATGTT 58.492 29.630 4.92 4.92 0.00 2.71
318 319 8.035165 TGATACTAATTGCACGTTAAACATGT 57.965 30.769 0.00 0.00 0.00 3.21
319 320 8.785101 GTTGATACTAATTGCACGTTAAACATG 58.215 33.333 0.00 0.00 0.00 3.21
320 321 7.966204 GGTTGATACTAATTGCACGTTAAACAT 59.034 33.333 0.00 0.00 0.00 2.71
321 322 7.041303 TGGTTGATACTAATTGCACGTTAAACA 60.041 33.333 0.00 0.00 0.00 2.83
322 323 7.299586 TGGTTGATACTAATTGCACGTTAAAC 58.700 34.615 0.00 0.00 0.00 2.01
323 324 7.436430 TGGTTGATACTAATTGCACGTTAAA 57.564 32.000 0.00 0.00 0.00 1.52
324 325 7.436430 TTGGTTGATACTAATTGCACGTTAA 57.564 32.000 0.00 0.00 0.00 2.01
325 326 7.436430 TTTGGTTGATACTAATTGCACGTTA 57.564 32.000 0.00 0.00 0.00 3.18
326 327 5.950758 TTGGTTGATACTAATTGCACGTT 57.049 34.783 0.00 0.00 0.00 3.99
327 328 5.950758 TTTGGTTGATACTAATTGCACGT 57.049 34.783 0.00 0.00 0.00 4.49
328 329 8.957028 CAATATTTGGTTGATACTAATTGCACG 58.043 33.333 0.00 0.00 0.00 5.34
329 330 8.755018 GCAATATTTGGTTGATACTAATTGCAC 58.245 33.333 10.40 0.00 37.78 4.57
330 331 8.473219 TGCAATATTTGGTTGATACTAATTGCA 58.527 29.630 13.18 13.18 41.63 4.08
331 332 8.755018 GTGCAATATTTGGTTGATACTAATTGC 58.245 33.333 8.77 8.77 38.07 3.56
337 338 9.407380 TGATTAGTGCAATATTTGGTTGATACT 57.593 29.630 0.00 0.00 33.33 2.12
338 339 9.450807 GTGATTAGTGCAATATTTGGTTGATAC 57.549 33.333 0.00 0.00 0.00 2.24
339 340 9.183368 TGTGATTAGTGCAATATTTGGTTGATA 57.817 29.630 0.00 0.00 0.00 2.15
340 341 8.065473 TGTGATTAGTGCAATATTTGGTTGAT 57.935 30.769 0.00 0.00 0.00 2.57
341 342 7.392953 TCTGTGATTAGTGCAATATTTGGTTGA 59.607 33.333 0.00 0.00 0.00 3.18
342 343 7.537715 TCTGTGATTAGTGCAATATTTGGTTG 58.462 34.615 0.00 0.00 0.00 3.77
343 344 7.701539 TCTGTGATTAGTGCAATATTTGGTT 57.298 32.000 0.00 0.00 0.00 3.67
344 345 7.701539 TTCTGTGATTAGTGCAATATTTGGT 57.298 32.000 0.00 0.00 0.00 3.67
350 351 9.225436 TGTGTTAATTCTGTGATTAGTGCAATA 57.775 29.630 0.00 0.00 0.00 1.90
351 352 8.109705 TGTGTTAATTCTGTGATTAGTGCAAT 57.890 30.769 0.00 0.00 0.00 3.56
352 353 7.503521 TGTGTTAATTCTGTGATTAGTGCAA 57.496 32.000 0.00 0.00 0.00 4.08
353 354 7.686438 ATGTGTTAATTCTGTGATTAGTGCA 57.314 32.000 0.00 0.00 0.00 4.57
378 379 9.944376 ACTGCACGTGGATATTAGATATTATTT 57.056 29.630 18.88 0.00 0.00 1.40
379 380 9.944376 AACTGCACGTGGATATTAGATATTATT 57.056 29.630 18.88 0.00 0.00 1.40
382 383 9.944376 ATTAACTGCACGTGGATATTAGATATT 57.056 29.630 18.88 1.11 0.00 1.28
389 390 8.450964 GCAATATATTAACTGCACGTGGATATT 58.549 33.333 18.88 14.09 34.87 1.28
390 391 7.065803 GGCAATATATTAACTGCACGTGGATAT 59.934 37.037 18.88 11.17 36.50 1.63
391 392 6.370442 GGCAATATATTAACTGCACGTGGATA 59.630 38.462 18.88 3.54 36.50 2.59
392 393 5.181245 GGCAATATATTAACTGCACGTGGAT 59.819 40.000 18.88 2.60 36.50 3.41
393 394 4.513692 GGCAATATATTAACTGCACGTGGA 59.486 41.667 18.88 14.63 36.50 4.02
394 395 4.515191 AGGCAATATATTAACTGCACGTGG 59.485 41.667 18.88 3.72 36.50 4.94
395 396 5.673337 AGGCAATATATTAACTGCACGTG 57.327 39.130 12.28 12.28 36.50 4.49
396 397 7.795482 TTTAGGCAATATATTAACTGCACGT 57.205 32.000 8.88 0.00 36.50 4.49
409 410 9.624697 CAATGCACGTTAATATTTAGGCAATAT 57.375 29.630 0.00 0.00 39.43 1.28
410 411 7.593273 GCAATGCACGTTAATATTTAGGCAATA 59.407 33.333 0.00 0.00 33.33 1.90
411 412 6.420604 GCAATGCACGTTAATATTTAGGCAAT 59.579 34.615 0.00 0.00 33.33 3.56
412 413 5.746245 GCAATGCACGTTAATATTTAGGCAA 59.254 36.000 0.00 0.00 33.33 4.52
413 414 5.163612 TGCAATGCACGTTAATATTTAGGCA 60.164 36.000 2.72 0.00 31.71 4.75
414 415 5.277825 TGCAATGCACGTTAATATTTAGGC 58.722 37.500 2.72 0.00 31.71 3.93
436 437 3.302434 CGGTACTAGTAAATGCACACGTG 59.698 47.826 15.48 15.48 0.00 4.49
437 438 3.057315 ACGGTACTAGTAAATGCACACGT 60.057 43.478 3.61 3.51 0.00 4.49
438 439 3.504863 ACGGTACTAGTAAATGCACACG 58.495 45.455 3.61 2.93 0.00 4.49
439 440 6.949578 TTTACGGTACTAGTAAATGCACAC 57.050 37.500 17.14 0.00 38.62 3.82
440 441 7.440556 TGTTTTTACGGTACTAGTAAATGCACA 59.559 33.333 19.82 18.67 41.75 4.57
441 442 7.741652 GTGTTTTTACGGTACTAGTAAATGCAC 59.258 37.037 23.72 23.72 41.75 4.57
442 443 7.095271 GGTGTTTTTACGGTACTAGTAAATGCA 60.095 37.037 19.82 18.08 41.75 3.96
443 444 7.095271 TGGTGTTTTTACGGTACTAGTAAATGC 60.095 37.037 19.82 16.64 41.75 3.56
444 445 8.309163 TGGTGTTTTTACGGTACTAGTAAATG 57.691 34.615 19.82 0.06 41.75 2.32
445 446 9.506018 AATGGTGTTTTTACGGTACTAGTAAAT 57.494 29.630 19.82 0.00 41.75 1.40
446 447 8.900983 AATGGTGTTTTTACGGTACTAGTAAA 57.099 30.769 17.14 17.14 40.86 2.01
464 465 9.236006 GGCTCATGAGAATAATAATAATGGTGT 57.764 33.333 27.04 0.00 0.00 4.16
465 466 8.680903 GGGCTCATGAGAATAATAATAATGGTG 58.319 37.037 27.04 0.00 0.00 4.17
466 467 8.393259 TGGGCTCATGAGAATAATAATAATGGT 58.607 33.333 27.04 0.00 0.00 3.55
467 468 8.812513 TGGGCTCATGAGAATAATAATAATGG 57.187 34.615 27.04 0.00 0.00 3.16
503 504 5.065218 GGTTATGCACTAGACAACTGAATGG 59.935 44.000 0.00 0.00 0.00 3.16
630 2633 7.181569 TGGTTTTCCTTCTTCTGATGTTTTT 57.818 32.000 0.00 0.00 41.38 1.94
729 2732 7.046442 CGATTCTTCGTACTTTTAATGAAACGC 60.046 37.037 0.00 0.00 40.53 4.84
771 2774 4.171005 TGGACGATCACGATTCTTTGTAC 58.829 43.478 0.00 0.00 42.66 2.90
939 2948 4.796290 GCTTGGCCTTCTTGGAAACTTAAC 60.796 45.833 3.32 0.00 38.35 2.01
1436 3480 7.624549 ACTTAGATCAATGTTGGTACTGACAT 58.375 34.615 8.28 8.28 37.39 3.06
1556 3601 8.452868 ACATATAATATAAGGGGGTTTTCTGCA 58.547 33.333 0.00 0.00 0.00 4.41
1557 3602 8.879427 ACATATAATATAAGGGGGTTTTCTGC 57.121 34.615 0.00 0.00 0.00 4.26
1577 3622 9.683870 AATTTGGGCATTTTTGTGATTACATAT 57.316 25.926 0.00 0.00 36.53 1.78
1578 3623 9.512588 AAATTTGGGCATTTTTGTGATTACATA 57.487 25.926 0.00 0.00 36.53 2.29
1579 3624 7.999450 AATTTGGGCATTTTTGTGATTACAT 57.001 28.000 0.00 0.00 36.53 2.29
1580 3625 7.814264 AAATTTGGGCATTTTTGTGATTACA 57.186 28.000 0.00 0.00 34.31 2.41
1614 3659 4.394797 AAATCCTCTCCTGGAGCTTTTT 57.605 40.909 19.08 12.06 39.78 1.94
1615 3660 4.394797 AAAATCCTCTCCTGGAGCTTTT 57.605 40.909 19.08 16.30 39.78 2.27
1616 3661 4.394797 AAAAATCCTCTCCTGGAGCTTT 57.605 40.909 19.08 11.92 39.78 3.51
1636 3681 3.861840 TGGTGGAAATTGCGAACAAAAA 58.138 36.364 0.00 0.00 39.77 1.94
1637 3682 3.526931 TGGTGGAAATTGCGAACAAAA 57.473 38.095 0.00 0.00 39.77 2.44
1638 3683 3.648009 GATGGTGGAAATTGCGAACAAA 58.352 40.909 0.00 0.00 39.77 2.83
1639 3684 2.351253 CGATGGTGGAAATTGCGAACAA 60.351 45.455 0.00 0.00 40.87 2.83
1640 3685 1.198867 CGATGGTGGAAATTGCGAACA 59.801 47.619 0.00 0.00 0.00 3.18
1641 3686 1.466950 TCGATGGTGGAAATTGCGAAC 59.533 47.619 0.00 0.00 0.00 3.95
1642 3687 1.814793 TCGATGGTGGAAATTGCGAA 58.185 45.000 0.00 0.00 0.00 4.70
1643 3688 1.814793 TTCGATGGTGGAAATTGCGA 58.185 45.000 0.00 0.00 0.00 5.10
1644 3689 2.355756 AGATTCGATGGTGGAAATTGCG 59.644 45.455 0.00 0.00 0.00 4.85
1645 3690 3.489738 CCAGATTCGATGGTGGAAATTGC 60.490 47.826 2.03 0.00 32.85 3.56
1646 3691 3.947196 TCCAGATTCGATGGTGGAAATTG 59.053 43.478 7.50 0.00 36.11 2.32
1647 3692 3.947834 GTCCAGATTCGATGGTGGAAATT 59.052 43.478 10.75 0.00 40.79 1.82
1648 3693 3.200825 AGTCCAGATTCGATGGTGGAAAT 59.799 43.478 10.75 2.44 40.79 2.17
1649 3694 2.571653 AGTCCAGATTCGATGGTGGAAA 59.428 45.455 10.75 0.00 40.79 3.13
1650 3695 2.093500 CAGTCCAGATTCGATGGTGGAA 60.093 50.000 10.75 0.00 40.79 3.53
1651 3696 1.482182 CAGTCCAGATTCGATGGTGGA 59.518 52.381 3.55 4.93 39.01 4.02
1652 3697 1.473965 CCAGTCCAGATTCGATGGTGG 60.474 57.143 3.55 1.77 39.01 4.61
1653 3698 1.208052 ACCAGTCCAGATTCGATGGTG 59.792 52.381 2.37 0.00 39.51 4.17
1654 3699 1.573108 ACCAGTCCAGATTCGATGGT 58.427 50.000 3.55 0.44 39.01 3.55
1655 3700 2.679837 CAAACCAGTCCAGATTCGATGG 59.320 50.000 0.00 0.00 39.33 3.51
1656 3701 3.599343 TCAAACCAGTCCAGATTCGATG 58.401 45.455 0.00 0.00 0.00 3.84
1657 3702 3.981071 TCAAACCAGTCCAGATTCGAT 57.019 42.857 0.00 0.00 0.00 3.59
1658 3703 3.762407 TTCAAACCAGTCCAGATTCGA 57.238 42.857 0.00 0.00 0.00 3.71
1659 3704 5.376854 AATTTCAAACCAGTCCAGATTCG 57.623 39.130 0.00 0.00 0.00 3.34
1660 3705 6.646653 GGAAAATTTCAAACCAGTCCAGATTC 59.353 38.462 8.09 0.00 0.00 2.52
1661 3706 6.524734 GGAAAATTTCAAACCAGTCCAGATT 58.475 36.000 8.09 0.00 0.00 2.40
1662 3707 5.278957 CGGAAAATTTCAAACCAGTCCAGAT 60.279 40.000 8.09 0.00 0.00 2.90
1663 3708 4.037446 CGGAAAATTTCAAACCAGTCCAGA 59.963 41.667 8.09 0.00 0.00 3.86
1664 3709 4.298332 CGGAAAATTTCAAACCAGTCCAG 58.702 43.478 8.09 0.00 0.00 3.86
1665 3710 3.491792 GCGGAAAATTTCAAACCAGTCCA 60.492 43.478 8.09 0.00 0.00 4.02
1666 3711 3.057019 GCGGAAAATTTCAAACCAGTCC 58.943 45.455 8.09 0.00 0.00 3.85
1667 3712 3.057019 GGCGGAAAATTTCAAACCAGTC 58.943 45.455 8.09 0.00 0.00 3.51
1668 3713 2.432510 TGGCGGAAAATTTCAAACCAGT 59.567 40.909 8.09 0.00 0.00 4.00
1669 3714 2.799978 GTGGCGGAAAATTTCAAACCAG 59.200 45.455 8.09 0.00 31.04 4.00
1670 3715 2.432510 AGTGGCGGAAAATTTCAAACCA 59.567 40.909 8.09 8.49 0.00 3.67
1671 3716 3.106242 AGTGGCGGAAAATTTCAAACC 57.894 42.857 8.09 6.08 0.00 3.27
1672 3717 6.036191 TGTTTAAGTGGCGGAAAATTTCAAAC 59.964 34.615 8.09 7.39 0.00 2.93
1673 3718 6.106673 TGTTTAAGTGGCGGAAAATTTCAAA 58.893 32.000 8.09 0.00 0.00 2.69
1674 3719 5.661458 TGTTTAAGTGGCGGAAAATTTCAA 58.339 33.333 8.09 0.00 0.00 2.69
1675 3720 5.263968 TGTTTAAGTGGCGGAAAATTTCA 57.736 34.783 8.09 0.00 0.00 2.69
1676 3721 6.591313 TTTGTTTAAGTGGCGGAAAATTTC 57.409 33.333 0.00 0.00 0.00 2.17
1677 3722 8.664211 TTATTTGTTTAAGTGGCGGAAAATTT 57.336 26.923 0.00 0.00 0.00 1.82
1678 3723 8.664211 TTTATTTGTTTAAGTGGCGGAAAATT 57.336 26.923 0.00 0.00 0.00 1.82
1679 3724 8.840833 ATTTATTTGTTTAAGTGGCGGAAAAT 57.159 26.923 0.00 0.00 0.00 1.82
1680 3725 9.760077 TTATTTATTTGTTTAAGTGGCGGAAAA 57.240 25.926 0.00 0.00 0.00 2.29
1681 3726 9.760077 TTTATTTATTTGTTTAAGTGGCGGAAA 57.240 25.926 0.00 0.00 0.00 3.13
1682 3727 9.760077 TTTTATTTATTTGTTTAAGTGGCGGAA 57.240 25.926 0.00 0.00 0.00 4.30
1683 3728 9.413048 CTTTTATTTATTTGTTTAAGTGGCGGA 57.587 29.630 0.00 0.00 0.00 5.54
1684 3729 9.413048 TCTTTTATTTATTTGTTTAAGTGGCGG 57.587 29.630 0.00 0.00 0.00 6.13
1725 3770 4.380841 TGGTCAGATACACCGTCAATAC 57.619 45.455 0.00 0.00 36.61 1.89
1726 3771 5.356426 CATTGGTCAGATACACCGTCAATA 58.644 41.667 0.00 0.00 36.61 1.90
1727 3772 3.973206 TTGGTCAGATACACCGTCAAT 57.027 42.857 0.00 0.00 36.61 2.57
1728 3773 3.595173 CATTGGTCAGATACACCGTCAA 58.405 45.455 0.00 0.00 36.61 3.18
1729 3774 2.093711 CCATTGGTCAGATACACCGTCA 60.094 50.000 0.00 0.00 36.61 4.35
1730 3775 2.550978 CCATTGGTCAGATACACCGTC 58.449 52.381 0.00 0.00 36.61 4.79
1731 3776 1.209504 CCCATTGGTCAGATACACCGT 59.790 52.381 1.20 0.00 36.61 4.83
1732 3777 1.475034 CCCCATTGGTCAGATACACCG 60.475 57.143 1.20 0.00 36.61 4.94
1733 3778 1.750682 GCCCCATTGGTCAGATACACC 60.751 57.143 1.20 0.00 36.04 4.16
1734 3779 1.680338 GCCCCATTGGTCAGATACAC 58.320 55.000 1.20 0.00 36.04 2.90
1735 3780 0.550914 GGCCCCATTGGTCAGATACA 59.449 55.000 1.20 0.00 39.18 2.29
1736 3781 0.178990 GGGCCCCATTGGTCAGATAC 60.179 60.000 12.23 0.00 42.20 2.24
1737 3782 1.705002 CGGGCCCCATTGGTCAGATA 61.705 60.000 18.66 0.00 42.20 1.98
1738 3783 3.018901 GGGCCCCATTGGTCAGAT 58.981 61.111 12.23 0.00 42.20 2.90
1739 3784 3.727258 CGGGCCCCATTGGTCAGA 61.727 66.667 18.66 0.00 42.20 3.27
1779 3824 4.410555 ACATAAGGGGGTTTTCTGCAAAAA 59.589 37.500 0.00 0.00 33.17 1.94
1780 3825 3.970640 ACATAAGGGGGTTTTCTGCAAAA 59.029 39.130 0.00 0.00 0.00 2.44
1781 3826 3.582164 ACATAAGGGGGTTTTCTGCAAA 58.418 40.909 0.00 0.00 0.00 3.68
1782 3827 3.252554 ACATAAGGGGGTTTTCTGCAA 57.747 42.857 0.00 0.00 0.00 4.08
1903 3949 6.591313 TTTGTTTAAGTGGCGGAAAATTTC 57.409 33.333 0.00 0.00 0.00 2.17
1904 3950 8.664211 TTATTTGTTTAAGTGGCGGAAAATTT 57.336 26.923 0.00 0.00 0.00 1.82
1905 3951 8.664211 TTTATTTGTTTAAGTGGCGGAAAATT 57.336 26.923 0.00 0.00 0.00 1.82
1906 3952 8.840833 ATTTATTTGTTTAAGTGGCGGAAAAT 57.159 26.923 0.00 0.00 0.00 1.82
1907 3953 9.760077 TTATTTATTTGTTTAAGTGGCGGAAAA 57.240 25.926 0.00 0.00 0.00 2.29
1908 3954 9.760077 TTTATTTATTTGTTTAAGTGGCGGAAA 57.240 25.926 0.00 0.00 0.00 3.13
1909 3955 9.760077 TTTTATTTATTTGTTTAAGTGGCGGAA 57.240 25.926 0.00 0.00 0.00 4.30
1910 3956 9.413048 CTTTTATTTATTTGTTTAAGTGGCGGA 57.587 29.630 0.00 0.00 0.00 5.54
1911 3957 9.413048 TCTTTTATTTATTTGTTTAAGTGGCGG 57.587 29.630 0.00 0.00 0.00 6.13
1960 4006 0.393077 CCCCATCGGTCAGATACACC 59.607 60.000 0.00 0.00 37.52 4.16
1961 4007 0.249911 GCCCCATCGGTCAGATACAC 60.250 60.000 0.00 0.00 37.52 2.90
1962 4008 1.407656 GGCCCCATCGGTCAGATACA 61.408 60.000 0.00 0.00 37.52 2.29
1963 4009 1.371558 GGCCCCATCGGTCAGATAC 59.628 63.158 0.00 0.00 37.52 2.24
1964 4010 1.841556 GGGCCCCATCGGTCAGATA 60.842 63.158 12.23 0.00 38.37 1.98
1965 4011 3.171388 GGGCCCCATCGGTCAGAT 61.171 66.667 12.23 0.00 38.37 2.90
2005 4051 4.410555 ACATAAGGGGGTTTTCTGCAAAAA 59.589 37.500 0.00 0.00 33.17 1.94
2006 4052 3.970640 ACATAAGGGGGTTTTCTGCAAAA 59.029 39.130 0.00 0.00 0.00 2.44
2007 4053 3.582164 ACATAAGGGGGTTTTCTGCAAA 58.418 40.909 0.00 0.00 0.00 3.68
2008 4054 3.252554 ACATAAGGGGGTTTTCTGCAA 57.747 42.857 0.00 0.00 0.00 4.08
2009 4055 2.990740 ACATAAGGGGGTTTTCTGCA 57.009 45.000 0.00 0.00 0.00 4.41
2010 4056 6.549736 ACATATAACATAAGGGGGTTTTCTGC 59.450 38.462 0.00 0.00 0.00 4.26
2011 4057 9.635404 TTACATATAACATAAGGGGGTTTTCTG 57.365 33.333 0.00 0.00 0.00 3.02
2015 4061 9.582648 GTGATTACATATAACATAAGGGGGTTT 57.417 33.333 0.00 0.00 0.00 3.27
2016 4062 8.729047 TGTGATTACATATAACATAAGGGGGTT 58.271 33.333 0.00 0.00 0.00 4.11
2017 4063 8.282801 TGTGATTACATATAACATAAGGGGGT 57.717 34.615 0.00 0.00 0.00 4.95
2018 4064 9.581289 TTTGTGATTACATATAACATAAGGGGG 57.419 33.333 0.00 0.00 36.53 5.40
2025 4071 9.762933 GGGCATTTTTGTGATTACATATAACAT 57.237 29.630 0.00 0.00 36.53 2.71
2026 4072 8.753133 TGGGCATTTTTGTGATTACATATAACA 58.247 29.630 0.00 0.00 36.53 2.41
2027 4073 9.593134 TTGGGCATTTTTGTGATTACATATAAC 57.407 29.630 0.00 0.00 36.53 1.89
2030 4076 9.683870 AATTTGGGCATTTTTGTGATTACATAT 57.316 25.926 0.00 0.00 36.53 1.78
2031 4077 9.512588 AAATTTGGGCATTTTTGTGATTACATA 57.487 25.926 0.00 0.00 36.53 2.29
2032 4078 7.999450 AATTTGGGCATTTTTGTGATTACAT 57.001 28.000 0.00 0.00 36.53 2.29
2033 4079 7.814264 AAATTTGGGCATTTTTGTGATTACA 57.186 28.000 0.00 0.00 34.31 2.41
2067 4113 4.394797 AAATCCTCTCCTGGAGCTTTTT 57.605 40.909 19.08 12.06 39.78 1.94
2068 4114 4.394797 AAAATCCTCTCCTGGAGCTTTT 57.605 40.909 19.08 16.30 39.78 2.27
2069 4115 4.394797 AAAAATCCTCTCCTGGAGCTTT 57.605 40.909 19.08 11.92 39.78 3.51
2089 4135 3.861840 TGGTGGAAATTGCGAACAAAAA 58.138 36.364 0.00 0.00 39.77 1.94
2090 4136 3.526931 TGGTGGAAATTGCGAACAAAA 57.473 38.095 0.00 0.00 39.77 2.44
2091 4137 3.648009 GATGGTGGAAATTGCGAACAAA 58.352 40.909 0.00 0.00 39.77 2.83
2092 4138 2.351253 CGATGGTGGAAATTGCGAACAA 60.351 45.455 0.00 0.00 40.87 2.83
2093 4139 1.198867 CGATGGTGGAAATTGCGAACA 59.801 47.619 0.00 0.00 0.00 3.18
2094 4140 1.466950 TCGATGGTGGAAATTGCGAAC 59.533 47.619 0.00 0.00 0.00 3.95
2095 4141 1.814793 TCGATGGTGGAAATTGCGAA 58.185 45.000 0.00 0.00 0.00 4.70
2096 4142 1.814793 TTCGATGGTGGAAATTGCGA 58.185 45.000 0.00 0.00 0.00 5.10
2097 4143 2.355756 AGATTCGATGGTGGAAATTGCG 59.644 45.455 0.00 0.00 0.00 4.85
2098 4144 3.489738 CCAGATTCGATGGTGGAAATTGC 60.490 47.826 2.03 0.00 32.85 3.56
2099 4145 3.947196 TCCAGATTCGATGGTGGAAATTG 59.053 43.478 7.50 0.00 36.11 2.32
2100 4146 3.947834 GTCCAGATTCGATGGTGGAAATT 59.052 43.478 10.75 0.00 40.79 1.82
2101 4147 3.200825 AGTCCAGATTCGATGGTGGAAAT 59.799 43.478 10.75 2.44 40.79 2.17
2102 4148 2.571653 AGTCCAGATTCGATGGTGGAAA 59.428 45.455 10.75 0.00 40.79 3.13
2103 4149 2.093500 CAGTCCAGATTCGATGGTGGAA 60.093 50.000 10.75 0.00 40.79 3.53
2104 4150 1.482182 CAGTCCAGATTCGATGGTGGA 59.518 52.381 3.55 4.93 39.01 4.02
2105 4151 1.473965 CCAGTCCAGATTCGATGGTGG 60.474 57.143 3.55 1.77 39.01 4.61
2106 4152 1.208052 ACCAGTCCAGATTCGATGGTG 59.792 52.381 2.37 0.00 39.51 4.17
2107 4153 1.573108 ACCAGTCCAGATTCGATGGT 58.427 50.000 3.55 0.44 39.01 3.55
2108 4154 2.679837 CAAACCAGTCCAGATTCGATGG 59.320 50.000 0.00 0.00 39.33 3.51
2109 4155 3.599343 TCAAACCAGTCCAGATTCGATG 58.401 45.455 0.00 0.00 0.00 3.84
2110 4156 3.981071 TCAAACCAGTCCAGATTCGAT 57.019 42.857 0.00 0.00 0.00 3.59
2111 4157 3.762407 TTCAAACCAGTCCAGATTCGA 57.238 42.857 0.00 0.00 0.00 3.71
2112 4158 5.376854 AATTTCAAACCAGTCCAGATTCG 57.623 39.130 0.00 0.00 0.00 3.34
2113 4159 6.646653 GGAAAATTTCAAACCAGTCCAGATTC 59.353 38.462 8.09 0.00 0.00 2.52
2114 4160 6.524734 GGAAAATTTCAAACCAGTCCAGATT 58.475 36.000 8.09 0.00 0.00 2.40
2115 4161 5.278957 CGGAAAATTTCAAACCAGTCCAGAT 60.279 40.000 8.09 0.00 0.00 2.90
2116 4162 4.037446 CGGAAAATTTCAAACCAGTCCAGA 59.963 41.667 8.09 0.00 0.00 3.86
2117 4163 4.298332 CGGAAAATTTCAAACCAGTCCAG 58.702 43.478 8.09 0.00 0.00 3.86
2118 4164 3.491792 GCGGAAAATTTCAAACCAGTCCA 60.492 43.478 8.09 0.00 0.00 4.02
2119 4165 3.057019 GCGGAAAATTTCAAACCAGTCC 58.943 45.455 8.09 0.00 0.00 3.85
2120 4166 3.057019 GGCGGAAAATTTCAAACCAGTC 58.943 45.455 8.09 0.00 0.00 3.51
2121 4167 2.432510 TGGCGGAAAATTTCAAACCAGT 59.567 40.909 8.09 0.00 0.00 4.00
2122 4168 2.799978 GTGGCGGAAAATTTCAAACCAG 59.200 45.455 8.09 0.00 31.04 4.00
2123 4169 2.432510 AGTGGCGGAAAATTTCAAACCA 59.567 40.909 8.09 8.49 0.00 3.67
2124 4170 3.106242 AGTGGCGGAAAATTTCAAACC 57.894 42.857 8.09 6.08 0.00 3.27
2125 4171 6.036191 TGTTTAAGTGGCGGAAAATTTCAAAC 59.964 34.615 8.09 7.39 0.00 2.93
2126 4172 6.106673 TGTTTAAGTGGCGGAAAATTTCAAA 58.893 32.000 8.09 0.00 0.00 2.69
2127 4173 5.661458 TGTTTAAGTGGCGGAAAATTTCAA 58.339 33.333 8.09 0.00 0.00 2.69
2128 4174 5.263968 TGTTTAAGTGGCGGAAAATTTCA 57.736 34.783 8.09 0.00 0.00 2.69
2158 4211 3.692593 GGCGCCTGATAAACTTTCCTTTA 59.307 43.478 22.15 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.